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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR216064 Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1 1 crisprs PrimPol,cas3,DinG,DEDDh 0 0 20 0

Results visualization

1. LR216064
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR216064_1 79950-80045 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 771 : 36881 42 Streptococcus_phage(56.52%) transposase,integrase,bacteriocin attL 958:1017|attR 14574:14645
DBSCAN-SWA_2 88466 : 124118 37 Streptococcus_phage(50.0%) transposase,tRNA,bacteriocin NA
DBSCAN-SWA_3 257146 : 310542 58 Pneumococcus_phage(20.0%) transposase,protease,integrase attL 268590:268610|attR 302677:302697
DBSCAN-SWA_4 322293 : 326901 6 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_5 341843 : 380154 36 Ostreococcus_lucimarinus_virus(20.0%) holin,transposase,tRNA NA
DBSCAN-SWA_6 417097 : 536705 111 Bacillus_phage(20.0%) transposase,bacteriocin,integrase,tRNA,protease attL 459523:459582|attR 463039:463150
DBSCAN-SWA_7 578102 : 615785 27 Staphylococcus_prophage(33.33%) transposase,protease NA
DBSCAN-SWA_8 704662 : 822156 111 Streptococcus_phage(15.15%) protease,transposase,integrase,tRNA attL 803104:803163|attR 806033:806144
DBSCAN-SWA_9 834315 : 878159 46 Streptococcus_phage(47.37%) protease,holin,transposase,tRNA NA
DBSCAN-SWA_10 890985 : 943785 44 Macacine_betaherpesvirus(14.29%) transposase,protease,integrase attL 890964:890979|attR 891493:891508
DBSCAN-SWA_11 983550 : 991209 10 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_12 1087567 : 1150511 58 Bacillus_phage(18.75%) protease,holin,tRNA,bacteriocin NA
DBSCAN-SWA_13 1179737 : 1199359 23 Bacillus_phage(66.67%) protease,transposase NA
DBSCAN-SWA_14 1283962 : 1325417 46 Streptococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_15 1391009 : 1397763 9 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_16 1417982 : 1422886 8 Streptococcus_phage(85.71%) NA NA
DBSCAN-SWA_17 1672701 : 1726255 54 Streptococcus_phage(25.0%) holin,transposase,integrase attL 1666988:1667012|attR 1700355:1700379
DBSCAN-SWA_18 1736693 : 1777854 48 Streptococcus_phage(44.44%) protease,transposase,tRNA,bacteriocin NA
DBSCAN-SWA_19 1896688 : 1954862 60 Bacillus_phage(33.33%) protease,holin,transposase,tRNA NA
DBSCAN-SWA_20 2001675 : 2050867 47 Streptococcus_phage(46.67%) protease,holin,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage