CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_002489	Xylella fastidiosa 9a5c plasmid pXF1.3, complete sequence	0 crisprs	NA	0
NC_002490	Xylella fastidiosa 9a5c plasmid pXF51, complete sequence	0 crisprs	NA	0
NC_002488	Xylella fastidiosa 9a5c, complete sequence	0 crisprs	csa3,DinG,Cas9_archaeal,DEDDh	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

453711 : 509918

Stenotrophomonas_phage(17.65%)

tRNA,protease,integrase,terminase,portal

attL 482917:482932|attR 501500:501515

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010892974.1\|453711_455406_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_010892975.1\|455555_455930_+	H-NS histone family protein	NA	NA	NA	NA
WP_010892976.1\|456268_456469_-	hypothetical protein	NA	NA	NA	NA
WP_004083585.1\|457037_457388_+	DMT family protein	NA	NA	NA	NA
WP_031336286.1\|457971_458358_-	twitching motility response regulator PilH	B5LWA6	Feldmannia_species_virus	9.6e-10	29.6
WP_031336287.1\|458450_459455_-	oxidoreductase	NA	NA	NA	NA
WP_010892980.1\|459601_460741_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_010892981.1\|460737_461601_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_031336290.1\|461760_461946_+	DUF2065 family protein	NA	NA	NA	NA
WP_031336291.1\|462138_463431_+	adenylosuccinate synthase	W5S5V7	Pithovirus	4.9e-74	37.7
WP_010892985.1\|463947_464952_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_010892986.1\|466481_466907_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-18	40.2
WP_042463544.1\|466932_468138_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_023906157.1\|468124_468934_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_020851188.1\|469886_470525_+	YfgM family protein	NA	NA	NA	NA
WP_031336297.1\|470525_471761_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_010892993.1\|471786_473184_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010892994.1\|473416_474556_-	molybdopterin-synthase adenylyltransferase MoeB	A0A1V0SIK8	Klosneuvirus	6.8e-11	28.0
WP_010892998.1\|475479_477048_+	EAL domain-containing protein	NA	NA	NA	NA
WP_010893000.1\|477565_478915_+	LOG family protein YgdH	NA	NA	NA	NA
WP_010893001.1\|479060_479573_+	GspH/FimT family pseudopilin	NA	NA	NA	NA
WP_031337553.1\|479569_480052_+	type IV pilus modification protein PilV	NA	NA	NA	NA
WP_023906163.1\|480048_481305_+	PilW family protein	NA	NA	NA	NA
WP_010893004.1\|481304_481799_+	fimbrial protein	NA	NA	NA	NA
WP_031337555.1\|481802_486368_+	pilus assembly protein	NA	NA	NA	NA
482917:482932	attL	NA	NA	NA	NA
WP_031337557.1\|486364_486820_+	type IV pilin protein	NA	NA	NA	NA
WP_010893008.1\|487056_488229_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	2.5e-117	53.2
WP_010893009.1\|488228_488501_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.7e-08	51.7
WP_010893010.1\|488522_488969_-	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	6.1e-32	51.0
WP_080507227.1\|488952_489378_-	DUF5131 family protein	NA	NA	NA	NA
WP_010893012.1\|489415_489622_-	hypothetical protein	NA	NA	NA	NA
WP_010893013.1\|489618_490164_-	hypothetical protein	Q5QF30	Pseudomonas_virus	7.2e-27	36.3
WP_042462740.1\|490160_490754_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_080507182.1\|490846_491383_-	pilin	NA	NA	NA	NA
WP_155114980.1\|491382_491523_-	hypothetical protein	NA	NA	NA	NA
WP_010893016.1\|491515_491782_-	hypothetical protein	NA	NA	NA	NA
WP_042462748.1\|491778_492057_-	hypothetical protein	NA	NA	NA	NA
WP_023907291.1\|492053_492275_-	hypothetical protein	NA	NA	NA	NA
WP_010893018.1\|492271_492721_-	hypothetical protein	NA	NA	NA	NA
WP_010893019.1\|492717_493182_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_010893020.1\|493178_493574_-	hypothetical protein	NA	NA	NA	NA
WP_010893021.1\|493570_493969_-	hypothetical protein	NA	NA	NA	NA
WP_010893023.1\|494468_494771_+	hypothetical protein	NA	NA	NA	NA
WP_042463557.1\|495074_496232_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_010893025.1\|496231_496699_+	DUF4411 family protein	NA	NA	NA	NA
WP_042463560.1\|497038_497491_-	hypothetical protein	C7BGF7	Burkholderia_phage	7.8e-11	47.1
WP_010893028.1\|497605_498037_-	transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	3.8e-15	57.4
WP_042462755.1\|498113_498410_+	transcriptional regulator	D0UIL8	Aggregatibacter_phage	1.9e-13	57.1
WP_042462759.1\|498396_498747_+	hypothetical protein	NA	NA	NA	NA
WP_042462762.1\|498804_499428_+	hypothetical protein	NA	NA	NA	NA
WP_042462765.1\|499529_499913_-	hypothetical protein	NA	NA	NA	NA
WP_010893033.1\|499911_500964_+	hypothetical protein	A0A1S5RF89	Helicobacter_phage	1.3e-11	40.5
WP_010893034.1\|500963_502430_+	virulence factor	A0A2D1GN57	Marinobacter_phage	1.3e-59	33.3
501500:501515	attR	NA	NA	NA	NA
WP_042462768.1\|502826_503435_+	hypothetical protein	A0A2I7S8M0	Vibrio_phage	8.6e-05	40.7
WP_010893036.1\|503431_505531_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	6.1e-74	30.6
WP_042462770.1\|505607_505820_+\|terminase	phage terminase large subunit family protein	NA	NA	NA	NA
WP_010893037.1\|505816_506053_+	hypothetical protein	NA	NA	NA	NA
WP_010893038.1\|506049_507612_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	5.9e-90	39.0
WP_042462775.1\|507608_509918_+\|protease	Clp protease ClpP	B7SYD7	Stenotrophomonas_phage	3.3e-81	37.6

DBSCAN-SWA_2

628437 : 735957

114

Xylella_phage(31.91%)

tRNA,holin,terminase,portal,capsid,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038200297.1\|628437_629745_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_010893184.1\|629776_630043_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_010893185.1\|630039_630915_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_031336341.1\|632114_632546_+	hypothetical protein	NA	NA	NA	NA
WP_010893189.1\|632770_633022_+	hypothetical protein	NA	NA	NA	NA
WP_010893190.1\|633031_633577_+	hypothetical protein	NA	NA	NA	NA
WP_010893191.1\|633734_634160_+	hypothetical protein	NA	NA	NA	NA
WP_010893193.1\|638189_640880_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_010893194.1\|641366_642320_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_010893195.1\|642420_643164_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_004083472.1\|643328_643568_+	acyl carrier protein	NA	NA	NA	NA
WP_010893197.1\|643725_644961_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_010893198.1\|645177_646536_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_010893199.1\|646649_647702_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_010893200.1\|647731_648691_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_004083467.1\|648690_649044_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_042463587.1\|650130_650454_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010893203.1\|650440_650677_-	hypothetical protein	C8CLF6	Xylella_phage	6.1e-07	60.8
WP_010893204.1\|650673_652092_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	3.3e-265	94.5
WP_042462867.1\|652155_652584_+	hypothetical protein	NA	NA	NA	NA
WP_010893206.1\|652585_652864_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-43	94.5
WP_010893207.1\|652860_655041_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.9
WP_010893208.1\|655042_656554_-	hypothetical protein	C8CLG1	Xylella_phage	7.0e-173	66.4
WP_010893209.1\|656626_657193_-	DUF2815 family protein	C8CLG2	Xylella_phage	4.1e-102	96.8
WP_010893210.1\|657192_658470_-	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	7.2e-203	83.5
WP_155114982.1\|658466_658964_-	hypothetical protein	C8CLG4	Xylella_phage	2.4e-37	76.1
WP_010893212.1\|658963_659155_-	hypothetical protein	C8CLG5	Xylella_phage	1.0e-12	69.5
WP_010893213.1\|659151_659424_-	hypothetical protein	NA	NA	NA	NA
WP_010893214.1\|659455_659650_-	hypothetical protein	C8CLG6	Xylella_phage	7.9e-21	78.1
WP_010893215.1\|659646_660048_-	hypothetical protein	C8CLG7	Xylella_phage	1.7e-41	65.4
WP_010893216.1\|660047_660437_-	hypothetical protein	C8CLG8	Xylella_phage	4.8e-17	80.4
WP_010893217.1\|660433_660991_-	hypothetical protein	C8CLG9	Xylella_phage	2.1e-10	38.0
WP_155114983.1\|661337_661541_+	hypothetical protein	NA	NA	NA	NA
WP_155114984.1\|661715_662453_-	helix-turn-helix domain-containing protein	E7C9R0	Salmonella_phage	2.1e-21	33.2
WP_010893221.1\|662445_662670_+	hypothetical protein	NA	NA	NA	NA
WP_010893222.1\|662843_663065_-	hypothetical protein	NA	NA	NA	NA
WP_042462876.1\|663046_663334_-	hypothetical protein	NA	NA	NA	NA
WP_023907741.1\|663375_663681_-	hypothetical protein	NA	NA	NA	NA
WP_042462880.1\|663808_663997_+	hypothetical protein	NA	NA	NA	NA
WP_010893226.1\|663993_664242_+	hypothetical protein	NA	NA	NA	NA
WP_042462883.1\|664302_664566_+	hypothetical protein	NA	NA	NA	NA
WP_080507192.1\|664594_664861_+	hypothetical protein	C8CLH4	Xylella_phage	1.3e-34	83.9
WP_010893228.1\|664857_665490_+	Bro-N domain-containing protein	A4PE61	Ralstonia_virus	1.9e-18	43.2
WP_042462886.1\|665626_668161_+	DNA primase	C8CLH6	Xylella_phage	0.0e+00	72.4
WP_010893230.1\|668703_668901_+	hypothetical protein	NA	NA	NA	NA
WP_042463593.1\|669093_669711_+	hypothetical protein	V5YTF6	Pseudomonas_phage	2.4e-26	50.0
WP_010893231.1\|669677_670172_+	lysozyme	I2GUG4	Acinetobacter_phage	8.5e-27	50.7
WP_010893232.1\|670182_670494_+\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	2.0e-18	43.0
WP_042462889.1\|670483_670945_+	hypothetical protein	NA	NA	NA	NA
WP_042462892.1\|670946_671171_+	hypothetical protein	NA	NA	NA	NA
WP_042462895.1\|671343_671883_+\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	1.1e-46	61.3
WP_042462898.1\|671875_673828_+\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	1.7e-251	66.6
WP_010893236.1\|673831_674380_+	hypothetical protein	V5YTG8	Pseudomonas_phage	1.4e-38	50.0
WP_010893237.1\|674376_675975_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	3.5e-130	51.3
WP_010893238.1\|675958_677839_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	2.1e-166	48.9
WP_010893239.1\|677856_678117_+	hypothetical protein	NA	NA	NA	NA
WP_042462902.1\|678116_678440_+	hypothetical protein	NA	NA	NA	NA
WP_010893241.1\|678436_678958_+	hypothetical protein	D5LGZ7	Escherichia_phage	2.8e-12	33.9
WP_042462905.1\|678933_679476_+	hypothetical protein	D5LGZ6	Escherichia_phage	5.8e-37	42.9
WP_010893243.1\|679472_680060_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_010893244.1\|680064_680340_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_042463596.1\|680350_680632_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.2e-14	46.2
WP_042462908.1\|680839_681178_+	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	2.3e-31	59.5
WP_010893248.1\|681177_682071_+\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	2.8e-68	45.8
WP_010893249.1\|682063_682621_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	3.0e-52	55.6
WP_042462912.1\|684284_685463_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	2.0e-138	56.1
WP_010893252.1\|685462_685972_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	2.0e-47	52.7
WP_010893253.1\|685974_686262_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	9.0e-13	43.4
WP_010893254.1\|686388_688608_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	7.8e-112	48.5
WP_010893255.1\|688604_689087_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	1.3e-27	46.0
WP_010893256.1\|689083_689302_+\|tail	tail protein X	NA	NA	NA	NA
WP_010893257.1\|689292_690375_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	5.7e-92	47.8
WP_010893260.1\|691466_693374_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.3e-126	37.5
WP_075584689.1\|693441_693969_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-12	32.7
WP_004090402.1\|694229_694427_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_010893263.1\|694437_694797_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_031338050.1\|695074_696070_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-29	35.5
WP_010893265.1\|696153_698532_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_010893266.1\|698555_698855_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.6e-12	40.4
WP_031337099.1\|698835_699192_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_080507228.1\|700139_700739_-	hypothetical protein	NA	NA	NA	NA
WP_010893271.1\|700886_701942_+	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
WP_010893272.1\|702727_703132_-	H-NS histone family protein	NA	NA	NA	NA
WP_010893274.1\|703410_704499_-	ribonuclease D	NA	NA	NA	NA
WP_038200859.1\|704621_706424_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	1.2e-25	34.4
WP_010893277.1\|706549_707407_+	virulence factor family protein	NA	NA	NA	NA
WP_010893278.1\|707472_708807_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	2.5e-36	34.5
WP_010893280.1\|709256_710747_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_010893281.1\|710743_711232_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_010893282.1\|711290_712910_+	N-acetylmuramoyl-L-alanine amidase	Q0H257	Geobacillus_phage	1.0e-12	27.6
WP_010893283.1\|713045_714905_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.0e-85	35.6
WP_023906990.1\|714904_715867_+	DUF1684 domain-containing protein	NA	NA	NA	NA
WP_010893285.1\|716135_716711_-	dCTP deaminase	S5VM63	Pseudomonas_phage	2.8e-69	67.7
WP_031338049.1\|717283_718069_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010893288.1\|718065_718506_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_010893289.1\|718502_718910_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_010893290.1\|718906_719251_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010893291.1\|719244_720540_-	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_042462926.1\|720965_721946_-	pteridine-dependent deoxygenase	NA	NA	NA	NA
WP_010893294.1\|722309_722579_+	acyl carrier protein	NA	NA	NA	NA
WP_010893295.1\|722553_723294_+	hypothetical protein	NA	NA	NA	NA
WP_162009301.1\|723333_723486_+	hypothetical protein	NA	NA	NA	NA
WP_010893297.1\|723535_723823_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_010893298.1\|723819_724800_+	acyltransferase	NA	NA	NA	NA
WP_080507193.1\|724723_725371_+	fatty acyl CoA synthetase	NA	NA	NA	NA
WP_010893299.1\|725349_725574_+	hypothetical protein	NA	NA	NA	NA
WP_010893300.1\|725566_727933_+	MMPL family transporter	NA	NA	NA	NA
WP_031338048.1\|727910_728345_+	phosphotransferase	NA	NA	NA	NA
WP_023906984.1\|728705_730949_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	1.8e-92	37.2
WP_023906983.1\|730955_731462_+	hypothetical protein	NA	NA	NA	NA
WP_010893304.1\|732247_734041_-	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_031338046.1\|734182_734383_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_031337090.1\|734431_735226_+	thiazole synthase	NA	NA	NA	NA
WP_010893307.1\|735222_735957_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA

DBSCAN-SWA_3

1515382 : 1520428

Xylella_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010894056.1\|1515382_1515631_-	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	8.0e-34	82.9
WP_010894057.1\|1515649_1515889_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_042463158.1\|1516262_1517150_+	YdaU family protein	A0A0P0I481	Acinetobacter_phage	4.5e-18	42.7
WP_042463161.1\|1517130_1517820_+	hypothetical protein	NA	NA	NA	NA
WP_042463672.1\|1517867_1518230_+	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	2.8e-11	43.0
WP_042463164.1\|1518249_1518948_+	hypothetical protein	C8CLH7	Xylella_phage	1.8e-102	82.6
WP_010894061.1\|1519135_1519402_+	BrnT family toxin	K4NX81	Burkholderia_phage	8.1e-08	40.7
WP_004085696.1\|1519388_1519727_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_042463169.1\|1519930_1520428_+	lysozyme	A0A2I7S753	Vibrio_phage	2.3e-27	51.7

DBSCAN-SWA_4

1523485 : 1540790

Haemophilus_phage(41.18%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080507236.1\|1523485_1524790_+	DUF1073 domain-containing protein	H9C106	Vibrio_phage	6.9e-68	37.6
WP_004090283.1\|1524838_1525120_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	45.2
WP_010894070.1\|1525116_1525455_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010894071.1\|1525527_1526373_+\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	2.7e-28	33.1
WP_042463176.1\|1526372_1527563_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.9e-40	42.2
WP_010894073.1\|1527590_1528073_+	hypothetical protein	NA	NA	NA	NA
WP_010894074.1\|1528082_1529066_+	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	9.9e-51	39.3
WP_010894075.1\|1529129_1529429_+	hypothetical protein	NA	NA	NA	NA
WP_010894076.1\|1529431_1529806_+	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.2e-12	39.1
WP_010894077.1\|1529802_1530276_+	hypothetical protein	M4SN98	Psychrobacter_phage	6.7e-05	25.3
WP_010894078.1\|1530256_1530637_+	hypothetical protein	Q776V7	Haemophilus_phage	2.3e-16	36.5
WP_010894079.1\|1530623_1531094_+	hypothetical protein	NA	NA	NA	NA
WP_010894080.1\|1531094_1532591_+	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	7.3e-122	48.0
WP_010894081.1\|1532600_1533038_+	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.3e-44	62.4
WP_010894082.1\|1533034_1533457_+	hypothetical protein	NA	NA	NA	NA
WP_010894084.1\|1533604_1535494_+	hypothetical protein	D0UII2	Aggregatibacter_phage	1.2e-23	27.7
WP_042463681.1\|1535820_1536069_+	hypothetical protein	NA	NA	NA	NA
WP_010894086.1\|1536444_1536873_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_042463183.1\|1536873_1537128_-	plasmid stabilization protein	NA	NA	NA	NA
WP_010894088.1\|1537239_1538010_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	6.4e-29	33.7
WP_010894089.1\|1538009_1538327_+	hypothetical protein	NA	NA	NA	NA
WP_010894090.1\|1538323_1539154_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	1.4e-77	52.6
WP_010894091.1\|1539150_1539792_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.6e-33	38.5
WP_010894092.1\|1539788_1540142_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	2.4e-23	47.0
WP_004085592.1\|1540197_1540491_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_010894094.1\|1540493_1540790_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.4e-23	53.7

DBSCAN-SWA_5

1585979 : 1604794

Xylella_phage(35.29%)

integrase

attL 1568477:1568491|attR 1595063:1595077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1568477:1568491	attL	NA	NA	NA	NA
WP_010894137.1\|1585979_1586999_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.1e-169	88.8
WP_010894138.1\|1586988_1587246_-	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	5.7e-35	82.4
WP_010894139.1\|1587264_1587720_-	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	2.4e-31	49.7
WP_010894140.1\|1587789_1588422_-	Bro-N domain-containing protein	B6SD63	Bacteriophage	6.2e-22	38.2
WP_162009303.1\|1588733_1589498_-	hypothetical protein	NA	NA	NA	NA
WP_010894142.1\|1589530_1591174_-	YqaJ viral recombinase family protein	U6C712	Ralstonia_phage	3.8e-95	37.6
WP_010894143.1\|1591170_1592097_-	phage recombination protein Bet	U6C6J0	Ralstonia_phage	5.1e-57	48.8
WP_010894144.1\|1592112_1592934_-	YfdQ family protein	I3PUY7	Vibrio_phage	6.3e-43	40.4
WP_010894145.1\|1592954_1593329_-	hypothetical protein	U5P4J6	Shigella_phage	5.6e-15	44.6
WP_010894146.1\|1593349_1593541_-	hypothetical protein	C8CLG6	Xylella_phage	1.3e-15	70.3
WP_010894147.1\|1593564_1593756_-	hypothetical protein	NA	NA	NA	NA
WP_010894148.1\|1593752_1594154_-	hypothetical protein	C8CLG7	Xylella_phage	3.3e-53	78.2
WP_010894149.1\|1594153_1594612_-	hypothetical protein	NA	NA	NA	NA
WP_080507209.1\|1594608_1595154_-	hypothetical protein	NA	NA	NA	NA
1595063:1595077	attR	NA	NA	NA	NA
WP_010894151.1\|1595545_1595734_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010894152.1\|1595730_1596342_+	Fic family protein	NA	NA	NA	NA
WP_042463200.1\|1596392_1597067_-	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	5.8e-18	30.1
WP_042463203.1\|1597151_1597397_+	hypothetical protein	NA	NA	NA	NA
WP_042463205.1\|1597393_1597699_-	hypothetical protein	NA	NA	NA	NA
WP_042463208.1\|1598078_1598267_+	hypothetical protein	NA	NA	NA	NA
WP_010894156.1\|1598263_1598512_+	hypothetical protein	NA	NA	NA	NA
WP_042463212.1\|1598508_1598892_+	hypothetical protein	NA	NA	NA	NA
WP_042463693.1\|1599095_1600208_+	Bro-N domain-containing protein	C8CLG1	Xylella_phage	2.1e-110	59.5
WP_023906549.1\|1600204_1600513_+	DUF1376 domain-containing protein	A0A0R6PKK6	Moraxella_phage	2.1e-15	42.2
WP_080507238.1\|1600521_1601598_+	YdaU family protein	A0A142K7R2	Mycobacterium_phage	2.7e-17	60.5
WP_042463161.1\|1601578_1602268_+	hypothetical protein	NA	NA	NA	NA
WP_042463696.1\|1602315_1602678_+	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	4.3e-12	43.9
WP_042463215.1\|1602697_1603396_+	hypothetical protein	C8CLH7	Xylella_phage	1.6e-95	78.3
WP_080507210.1\|1603448_1603703_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_004085025.1\|1603699_1604035_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_042463169.1\|1604296_1604794_+	lysozyme	A0A2I7S753	Vibrio_phage	2.3e-27	51.7

DBSCAN-SWA_6

1607851 : 1630508

Haemophilus_phage(31.82%)

tail,plate,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080507236.1\|1607851_1609156_+	DUF1073 domain-containing protein	H9C106	Vibrio_phage	6.9e-68	37.6
WP_004090283.1\|1609204_1609486_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	45.2
WP_010894070.1\|1609482_1609821_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010894071.1\|1609893_1610739_+\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	2.7e-28	33.1
WP_042463176.1\|1610738_1611929_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.9e-40	42.2
WP_010894073.1\|1611956_1612439_+	hypothetical protein	NA	NA	NA	NA
WP_010894074.1\|1612448_1613432_+	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	9.9e-51	39.3
WP_010894075.1\|1613495_1613795_+	hypothetical protein	NA	NA	NA	NA
WP_010894076.1\|1613797_1614172_+	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.2e-12	39.1
WP_010894077.1\|1614168_1614642_+	hypothetical protein	M4SN98	Psychrobacter_phage	6.7e-05	25.3
WP_010894078.1\|1614622_1615003_+	hypothetical protein	Q776V7	Haemophilus_phage	2.3e-16	36.5
WP_010894079.1\|1614989_1615460_+	hypothetical protein	NA	NA	NA	NA
WP_010894080.1\|1615460_1616957_+	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	7.3e-122	48.0
WP_010894081.1\|1616966_1617404_+	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.3e-44	62.4
WP_010894082.1\|1617400_1617823_+	hypothetical protein	NA	NA	NA	NA
WP_010894164.1\|1617970_1619860_+	hypothetical protein	D0UII2	Aggregatibacter_phage	6.8e-24	28.0
WP_088371569.1\|1620189_1620366_+	hypothetical protein	NA	NA	NA	NA
WP_010894166.1\|1620399_1620588_+	hypothetical protein	NA	NA	NA	NA
WP_010894167.1\|1620592_1620763_-	antitoxin	NA	NA	NA	NA
WP_042463219.1\|1620815_1621091_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	3.5e-14	43.9
WP_031336679.1\|1621074_1621302_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_010894169.1\|1621412_1622183_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	3.7e-29	33.3
WP_010894170.1\|1622182_1622500_+	hypothetical protein	NA	NA	NA	NA
WP_010894171.1\|1622496_1623327_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	6.8e-77	51.8
WP_010894172.1\|1623323_1623965_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.3e-32	38.1
WP_010894173.1\|1623961_1624315_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	2.8e-24	47.8
WP_004089254.1\|1624325_1624631_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.1e-11	43.6
WP_042463224.1\|1624627_1624930_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.4e-26	58.1
WP_042463227.1\|1625028_1626174_+\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	6.9e-96	48.4
WP_010894176.1\|1626170_1626731_+	DUF2612 domain-containing protein	D0UIH4	Aggregatibacter_phage	1.5e-32	41.9
WP_010894177.1\|1626734_1627898_+\|tail	tail fiber protein	A4PE46	Ralstonia_virus	1.4e-08	32.7
WP_010894178.1\|1627930_1628410_-	hypothetical protein	NA	NA	NA	NA
WP_010894179.1\|1628443_1629559_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_010894180.1\|1629574_1629865_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010894181.1\|1630175_1630508_+	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	7.0e-17	40.7

DBSCAN-SWA_7

2006147 : 2014835

Pseudomonas_phage(33.33%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031336505.1\|2006147_2006480_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	5.4e-17	39.8
WP_075584631.1\|2006802_2007045_+	hypothetical protein	NA	NA	NA	NA
WP_023906406.1\|2007057_2007309_+	glycine zipper family protein	NA	NA	NA	NA
WP_023906405.1\|2007403_2007703_+	hypothetical protein	NA	NA	NA	NA
WP_010894565.1\|2007753_2008146_+	hypothetical protein	NA	NA	NA	NA
WP_010894567.1\|2008481_2008994_-	hypothetical protein	A0A0E3FDC5	Synechococcus_phage	4.5e-07	47.5
WP_010894568.1\|2008986_2011812_-	hypothetical protein	J9RWA5	Pseudomonas_phage	1.1e-70	35.9
WP_010894569.1\|2011801_2012038_-	hypothetical protein	A0A0A1IV01	Pseudomonas_phage	1.6e-12	50.7
WP_052262867.1\|2012034_2012463_-	hypothetical protein	NA	NA	NA	NA
WP_023907545.1\|2012589_2012880_-	hypothetical protein	NA	NA	NA	NA
WP_010894572.1\|2013032_2013512_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	5.2e-13	32.8
WP_042463315.1\|2013508_2013745_-	hypothetical protein	NA	NA	NA	NA
WP_080507242.1\|2013821_2014835_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	9.6e-17	28.3

DBSCAN-SWA_8

2170953 : 2183135

Xylella_phage(45.45%)

tRNA,integrase

attL 2158490:2158503|attR 2193161:2193174

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2158490:2158503	attL	NA	NA	NA	NA
WP_010894729.1\|2170953_2171886_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	3.7e-15	36.6
WP_010894730.1\|2171885_2172680_-	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	8.0e-19	29.7
WP_010894731.1\|2172978_2173932_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010894734.1\|2174737_2176018_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.5e-95	51.2
WP_010894735.1\|2176139_2176835_+	energy transducer TonB	NA	NA	NA	NA
WP_010894736.1\|2177070_2178132_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	4.4e-97	53.5
WP_010894737.1\|2178143_2178440_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	4.5e-07	48.1
WP_080507243.1\|2178436_2178751_-	hypothetical protein	C8CLF7	Xylella_phage	8.3e-28	89.2
WP_155114997.1\|2178739_2179609_+	DNA polymerase	C8CLG0	Xylella_phage	1.6e-129	90.6
WP_081089917.1\|2179842_2180364_+	hypothetical protein	C8CLG0	Xylella_phage	1.4e-91	92.5
WP_010893206.1\|2180360_2180639_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-43	94.5
WP_010894740.1\|2180640_2180949_-	hypothetical protein	NA	NA	NA	NA
WP_052262871.1\|2181048_2181726_+	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	3.6e-12	42.9
WP_010894742.1\|2181722_2183135_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.3e-221	93.2
2193161:2193174	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2361084 : 2404268

Xylella_phage(45.95%)

integrase,terminase,holin,portal,plate,capsid,tail

attL 2371517:2371531|attR 2405206:2405220

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010894920.1\|2361084_2361492_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010894921.1\|2361811_2362894_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	6.7e-93	48.4
WP_010893256.1\|2362884_2363103_-\|tail	tail protein X	NA	NA	NA	NA
WP_010893255.1\|2363099_2363582_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	1.3e-27	46.0
WP_010894922.1\|2363578_2365798_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	1.1e-108	46.6
WP_010894923.1\|2365924_2366212_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	6.9e-13	43.4
WP_010893252.1\|2366214_2366724_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	2.0e-47	52.7
WP_042462912.1\|2366723_2367902_-\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	2.0e-138	56.1
WP_010894924.1\|2367966_2369559_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	9.9e-85	36.8
WP_010893249.1\|2369566_2370124_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	3.0e-52	55.6
WP_010893248.1\|2370116_2371010_-\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	2.8e-68	45.8
WP_042462908.1\|2371009_2371348_-	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	2.3e-31	59.5
2371517:2371531	attL	NA	NA	NA	NA
WP_010894925.1\|2371565_2371868_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_010894926.1\|2371870_2372272_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_010894927.1\|2372340_2372928_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_010894928.1\|2372924_2373467_-	hypothetical protein	D5LGZ6	Escherichia_phage	2.0e-37	42.9
WP_010893241.1\|2373442_2373964_-	hypothetical protein	D5LGZ7	Escherichia_phage	2.8e-12	33.9
WP_042462902.1\|2373960_2374284_-	hypothetical protein	NA	NA	NA	NA
WP_010893239.1\|2374283_2374544_-	hypothetical protein	NA	NA	NA	NA
WP_010893238.1\|2374561_2376442_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	2.1e-166	48.9
WP_010893237.1\|2376425_2378024_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	3.5e-130	51.3
WP_010893236.1\|2378020_2378569_-	hypothetical protein	V5YTG8	Pseudomonas_phage	1.4e-38	50.0
WP_042462898.1\|2378572_2380525_-\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	1.7e-251	66.6
WP_042462895.1\|2380517_2381057_-\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	1.1e-46	61.3
WP_042462892.1\|2381229_2381454_-	hypothetical protein	NA	NA	NA	NA
WP_042462889.1\|2381455_2381917_-	hypothetical protein	NA	NA	NA	NA
WP_010893232.1\|2381906_2382218_-\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	2.0e-18	43.0
WP_010893231.1\|2382228_2382723_-	lysozyme	I2GUG4	Acinetobacter_phage	8.5e-27	50.7
WP_042463593.1\|2382689_2383307_-	hypothetical protein	V5YTF6	Pseudomonas_phage	2.4e-26	50.0
WP_042463422.1\|2383797_2386329_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	72.0
WP_010894930.1\|2386431_2387250_-	Bro-N domain-containing protein	C8CLH5	Xylella_phage	5.7e-28	59.7
WP_155115001.1\|2387748_2387910_+	hypothetical protein	NA	NA	NA	NA
WP_023907050.1\|2388037_2388283_-	hypothetical protein	NA	NA	NA	NA
WP_010894932.1\|2388343_2388592_-	hypothetical protein	NA	NA	NA	NA
WP_010894933.1\|2388588_2388777_-	hypothetical protein	NA	NA	NA	NA
WP_051372715.1\|2388830_2389055_-	hypothetical protein	NA	NA	NA	NA
WP_023907048.1\|2389156_2389462_+	hypothetical protein	NA	NA	NA	NA
WP_031338060.1\|2389458_2389659_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_010894935.1\|2389732_2390503_+	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	6.0e-27	34.5
WP_010894936.1\|2390671_2391211_+	hypothetical protein	NA	NA	NA	NA
WP_052262873.1\|2391247_2391559_+	hypothetical protein	NA	NA	NA	NA
WP_010894938.1\|2391746_2392202_+	hypothetical protein	NA	NA	NA	NA
WP_010894939.1\|2392307_2392697_+	hypothetical protein	C8CLG9	Xylella_phage	1.0e-06	37.5
WP_010894940.1\|2392693_2393095_+	hypothetical protein	C8CLG8	Xylella_phage	3.7e-12	70.0
WP_042463427.1\|2393154_2393637_-	hypothetical protein	NA	NA	NA	NA
WP_023907733.1\|2393936_2394128_+	hypothetical protein	NA	NA	NA	NA
WP_010894942.1\|2394151_2394343_+	hypothetical protein	C8CLG6	Xylella_phage	3.1e-17	75.0
WP_010894943.1\|2394374_2394572_+	hypothetical protein	C8CLG5	Xylella_phage	2.3e-23	90.5
WP_042463433.1\|2394623_2395067_+	hypothetical protein	C8CLG4	Xylella_phage	1.6e-32	78.6
WP_010894945.1\|2395063_2396341_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	2.6e-205	84.2
WP_010894946.1\|2396340_2396907_+	DUF2815 family protein	C8CLG2	Xylella_phage	2.7e-101	96.3
WP_010894947.1\|2396975_2398490_+	hypothetical protein	C8CLG1	Xylella_phage	9.2e-181	68.0
WP_010894948.1\|2398491_2400672_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.2
WP_010893206.1\|2400668_2400947_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-43	94.5
WP_010894949.1\|2400948_2401344_-	hypothetical protein	NA	NA	NA	NA
WP_010894950.1\|2401428_2402847_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	5.4e-260	92.4
WP_010894951.1\|2402843_2403008_+	hypothetical protein	C8CLF6	Xylella_phage	5.9e-17	84.9
WP_023907056.1\|2403000_2403249_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	3.0e-33	80.5
WP_010894952.1\|2403248_2404268_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.1e-169	87.6
2405206:2405220	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage