CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_002516	Pseudomonas aeruginosa PAO1, complete genome	2 crisprs	csa3,RT,DinG,WYL,DEDDh,cas3	1	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_002516_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002516_1

343146-343259

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002516_1

>merge|NC_002516|1|343146-343259|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NC_002516|1|1|343146-343259|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_002516.2\|NP_248989.1\|335526_336885_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_002516.2\|NP_249000.1\|350088_350841_-\|hypothetical-protein	unknown	unknown	unknown
NC_002516.2\|YP_008719731.1\|347831_348335_-\|transcriptional-regulator	unknown	unknown	unknown
NC_002516.2\|NP_248996.1\|344302_346690_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225241
NC_002516.2\|NP_248991.1\|338436_339540_+\|putrescine-ABC-transporter-substrate-binding-protein-SpuD	unknown	unknown	gnl\|CDD\|270377
NC_002516.2\|NP_248984.1\|329992_330871_-\|N-carbamoylputrescine-amidohydrolase	unknown	unknown	gnl\|CDD\|274553
NC_002516.2\|NP_248987.1\|333078_334455_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_002516.2\|NP_248992.1\|339958_341056_+\|spermidine-ABC-transporter-substrate-binding-protein-SpuE	unknown	unknown	gnl\|CDD\|270377
NC_002516.2\|NP_248986.1\|331761_332823_-\|polyamine-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_002516.2\|NP_248997.1\|346800_347853_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_002516.2\|NP_249001.1\|350889_351588_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226274
NC_002516.2\|NP_249003.1\|352429_352924_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224597
NC_002516.2\|NP_249004.1\|352926_353619_-\|L-cysteine-ABC-transporter-protein-YecS	unknown	unknown	gnl\|CDD\|223836
NC_002516.2\|NP_248999.1\|349049_350069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225176
NC_002516.2\|NP_248985.1\|331033_331699_-\|transcriptional-regulator-AguR	unknown	unknown	gnl\|CDD\|224228
NC_002516.2\|NP_249002.1\|351609_352164_-\|hypothetical-protein	unknown	unknown	unknown
NC_002516.2\|NP_248993.1\|341110_342265_+\|polyamine-transporter-PotG	unknown	unknown	gnl\|CDD\|183226
NC_002516.2\|NP_248990.1\|336950_338321_+\|aminotransferase	unknown	unknown	gnl\|CDD\|180994
NC_002516.2\|NP_248988.1\|334733_335486_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|336781
NC_002516.2\|NP_248998.1\|348439_349051_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239267

Protein	Function_ID	Function_description	E-value
NC_002516.2\|NP_248989.1\|335526_336885_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NC_002516.2\|NP_248996.1\|344302_346690_-\|hypothetical-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NC_002516.2\|NP_248991.1\|338436_339540_+\|putrescine-ABC-transporter-substrate-binding-protein-SpuD	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_002516.2\|NP_248984.1\|329992_330871_-\|N-carbamoylputrescine-amidohydrolase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_002516.2\|NP_248987.1\|333078_334455_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NC_002516.2\|NP_248992.1\|339958_341056_+\|spermidine-ABC-transporter-substrate-binding-protein-SpuE	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_002516.2\|NP_248986.1\|331761_332823_-\|polyamine-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NC_002516.2\|NP_248997.1\|346800_347853_+\|transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NC_002516.2\|NP_249001.1\|350889_351588_+\|hypothetical-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NC_002516.2\|NP_249003.1\|352429_352924_+\|hypothetical-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NC_002516.2\|NP_249004.1\|352926_353619_-\|L-cysteine-ABC-transporter-protein-YecS	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NC_002516.2\|NP_248999.1\|349049_350069_+\|hypothetical-protein	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NC_002516.2\|NP_248985.1\|331033_331699_-\|transcriptional-regulator-AguR	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.70235e-09
NC_002516.2\|NP_248993.1\|341110_342265_+\|polyamine-transporter-PotG	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NC_002516.2\|NP_248990.1\|336950_338321_+\|aminotransferase	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NC_002516.2\|NP_248988.1\|334733_335486_+\|glutamine-amidotransferase	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NC_002516.2\|NP_248998.1\|348439_349051_-\|hypothetical-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.0013342

>NC_002516.2|NP_248993.1|341110_342265_+|polyamine-transporter-PotG
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NC_002516.2|NP_248992.1|339958_341056_+|spermidine-ABC-transporter-substrate-binding-protein-SpuE
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NC_002516.2|NP_248991.1|338436_339540_+|putrescine-ABC-transporter-substrate-binding-protein-SpuD
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NC_002516.2|NP_248990.1|336950_338321_+|aminotransferase
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NC_002516.2|NP_248989.1|335526_336885_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NC_002516.2|NP_248988.1|334733_335486_+|glutamine-amidotransferase
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NC_002516.2|NP_248987.1|333078_334455_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NC_002516.2|NP_248986.1|331761_332823_-|polyamine-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NC_002516.2|NP_248985.1|331033_331699_-|transcriptional-regulator-AguR
MQPTSPTRKPRASSQARIAAILDAARGLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NC_002516.2|NP_248984.1|329992_330871_-|N-carbamoylputrescine-amidohydrolase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NC_002516.2|NP_248996.1|344302_346690_-|hypothetical-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLRRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NC_002516.2|NP_248997.1|346800_347853_+|transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NC_002516.2|YP_008719731.1|347831_348335_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NC_002516.2|NP_248998.1|348439_349051_-|hypothetical-protein
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRALAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NC_002516.2|NP_248999.1|349049_350069_+|hypothetical-protein
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NC_002516.2|NP_249000.1|350088_350841_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NC_002516.2|NP_249001.1|350889_351588_+|hypothetical-protein
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NC_002516.2|NP_249002.1|351609_352164_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NC_002516.2|NP_249003.1|352429_352924_+|hypothetical-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NC_002516.2|NP_249004.1|352926_353619_-|L-cysteine-ABC-transporter-protein-YecS
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NC_002516_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002516_2

3841728-3841955

Orphan

Consensus_repeat	Method
CTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCA	PILER-CR

2 spacers

The CRISPR arrays of NC_002516_2

>merge|NC_002516|2|3841728-3841955|PILER-CR
CCCGGCGTAGGACGAATAACCGCCAGCTCGGCAGAGGCTACGGCGGATAACGCCTGGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCACCTCGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCA

>NC_002516|2|1|3841728-3841955|PILER-CR
CCCGGCGTAGGACGAATAACCGCCAGCTCGGCAGAGGCTACGGCGGATAA	CGCCTGGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAAT
AACCGCTACGCGGTTATCCGCCACCTCGGCAGGCGTTTCGGCGGATAACG	CCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAAT
AACCGCTACGCGGTTATCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_002516.2\|YP_008719767.1\|3847199_3847538_+\|type-III-effector-protein	unknown	unknown	gnl\|CDD\|378082
NC_002516.2\|NP_252125.1\|3843652_3844105_-\|flavodoxin	unknown	unknown	gnl\|CDD\|168208
NC_002516.2\|NP_252132.1\|3847973_3848798_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183055
NC_002516.2\|NP_252128.1\|3845774_3846335_+\|GTP-cyclohydrolase-I	unknown	unknown	gnl\|CDD\|237149
NC_002516.2\|NP_252114.1\|3833773_3835180_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274522
NC_002516.2\|NP_252127.1\|3845052_3845757_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|180586
NC_002516.2\|NP_252113.1\|3832939_3833683_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NC_002516.2\|NP_252117.1\|3836465_3837377_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187611
NC_002516.2\|NP_252116.1\|3835578_3836349_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236205
NC_002516.2\|NP_252121.1\|3839685_3840372_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224265
NC_002516.2\|NP_252118.1\|3837492_3837786_-\|hypothetical-protein	unknown	unknown	unknown
NC_002516.2\|NP_252126.1\|3844384_3844942_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225765
NC_002516.2\|NP_252120.1\|3838777_3839557_-\|aldolase	unknown	unknown	gnl\|CDD\|235916
NC_002516.2\|NP_252115.1\|3835214_3835559_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225981
NC_002516.2\|NP_252122.1\|3840358_3840748_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224298
NC_002516.2\|NP_252129.1\|3846336_3846708_+\|D-erythro-7,8-dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NC_002516.2\|NP_252119.1\|3837884_3838781_-\|epoxide-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_002516.2\|NP_252131.1\|3847717_3847933_-\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|226113
NC_002516.2\|NP_252130.1\|3846836_3847148_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226023
NC_002516.2\|NP_252124.1\|3842273_3843290_-\|transposase	unknown	unknown	gnl\|CDD\|226077

Protein	Function_ID	Function_description	E-value
NC_002516.2\|YP_008719767.1\|3847199_3847538_+\|type-III-effector-protein	gnl\|CDD\|378082	pfam08888, HopJ, HopJ type III effector protein. Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins in this family are called HopJ after the original member HopPmaJ.	4.35687e-54
NC_002516.2\|NP_252125.1\|3843652_3844105_-\|flavodoxin	gnl\|CDD\|168208	PRK05723, PRK05723, flavodoxin; Provisional.	5.35164e-98
NC_002516.2\|NP_252132.1\|3847973_3848798_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-subunit	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	3.88487e-166
NC_002516.2\|NP_252128.1\|3845774_3846335_+\|GTP-cyclohydrolase-I	gnl\|CDD\|237149	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.	1.62465e-124
NC_002516.2\|NP_252114.1\|3833773_3835180_+\|hypothetical-protein	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	1.89748e-57
NC_002516.2\|NP_252127.1\|3845052_3845757_+\|short-chain-dehydrogenase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	3.29755e-150
NC_002516.2\|NP_252113.1\|3832939_3833683_+\|transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	3.89695e-17
NC_002516.2\|NP_252117.1\|3836465_3837377_-\|short-chain-dehydrogenase	gnl\|CDD\|187611	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs. Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.71079e-146
NC_002516.2\|NP_252116.1\|3835578_3836349_-\|enoyl-CoA-hydratase	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	2.19023e-155
NC_002516.2\|NP_252121.1\|3839685_3840372_-\|hypothetical-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	2.0025e-93
NC_002516.2\|NP_252126.1\|3844384_3844942_+\|hypothetical-protein	gnl\|CDD\|225765	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown].	1.18537e-84
NC_002516.2\|NP_252120.1\|3838777_3839557_-\|aldolase	gnl\|CDD\|235916	PRK07044, PRK07044, aldolase II superfamily protein; Provisional.	1.76467e-159
NC_002516.2\|NP_252115.1\|3835214_3835559_+\|hypothetical-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	8.31479e-48
NC_002516.2\|NP_252122.1\|3840358_3840748_-\|hypothetical-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	3.74785e-31
NC_002516.2\|NP_252129.1\|3846336_3846708_+\|D-erythro-7,8-dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	3.45838e-76
NC_002516.2\|NP_252119.1\|3837884_3838781_-\|epoxide-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.05112e-20
NC_002516.2\|NP_252131.1\|3847717_3847933_-\|molybdopterin-binding-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	5.68345e-18
NC_002516.2\|NP_252130.1\|3846836_3847148_+\|hypothetical-protein	gnl\|CDD\|226023	COG3492, COG3492, Uncharacterized protein conserved in bacteria [Function unknown].	2.30637e-55
NC_002516.2\|NP_252124.1\|3842273_3843290_-\|transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.79496e-53

>NC_002516.2|NP_252122.1|3840358_3840748_-|hypothetical-protein
MLPPLVRRLSRLAAELAVLIAFWWAGGWLAKAIGLPLPGGVVGLAALLLLFASGLLRPAWLQAGAGLLLAEMLLFFIPALMSLLDYGALLRSEGWRILLVIMLSTLLVMLVTAVSVEWMCRWRARHESR
>NC_002516.2|NP_252121.1|3839685_3840372_-|hypothetical-protein
MSLDKQALFWLAATVGGYLLSRQLYRRVKWYWLSPIVFVPVLLYALAIPTHTRYADYARDTNWLVALLGPATVAFAIPIWQQRELLMRHWPALLAGMFAGTAVAIGSSWALAQALALDGQVTLSLLPRSITTPFAMEMSHDLGGVPELTAAFVMITGVFGAVIGGTLLRVLRLRTPLARGALFGVGAHGAGTSRAYEFGGEEGSAAGLLMVLTGLFNLLVAPLVAHCL
>NC_002516.2|NP_252120.1|3838777_3839557_-|aldolase
MTAVHSLPADVQAQVSAAEWQTRVDLAACYRLVALHGWDDLIFTHISAKVPGTEDFLINPFGLMFHEITASSLVKVDASGKKLMDSPYEINPAGYTIHSAVHEVRHDVECVLHTHTAAGIAVSCQKQGLLPLSQQSLFVLSSLSYHAYEGVALNHEEKARLQADLGASNFLILPNHGLLTCGGSIADTFLMMFTLQRACEVQVMAQSGGAELIHIPGQILAGARDMIAGVMRSKTGMGGQLAWPALLRKLDQQNPGYRQ
>NC_002516.2|NP_252119.1|3837884_3838781_-|epoxide-hydrolase
MTAALPGIPLEAWRRRGRTLDFKGFPIRYWEAGQGRPLLLIHGFPSAAWDWHYLWEPLAQRYRVLVCDLLGFGDSAKPRAHRYSLLEQADLQQALLGRLGIDEPLHVLAHDYGDSVAQELLARHHEGRLRLASCVFLNGGLFPETHRPVLSQKLLLSPLGGLFGRLFDRRALARNFAKVFGPRSQPGETELDAFWSLIESNQGQRVMHRLIRYIVDRREQRERWVAALQHGGVPLRVIDGAVDPISGAHMVERYRQLVADADCVLLDGIGHYPQIEAPAAVLEHYLAFRARLDDSEFS
>NC_002516.2|NP_252118.1|3837492_3837786_-|hypothetical-protein
MHDPVSPLRAFDEGSWLFRQMVQAQPFIRQSGMVLAELGLLLALGLGYLCWQEGSRWYAVGAGLALLGSLLLVVVRHNYDWWLFKLGPRGRLYIPFD
>NC_002516.2|NP_252117.1|3836465_3837377_-|short-chain-dehydrogenase
MSDALRFDDQVVIVTGAGGGLGRAHALLFAKHGARVVVNDLGGSTHGEGASASAADKVVAEIRAAGGTAVANHDSVTDGGRIVENALDAFGRVDVVVNNAGILRDKTFHKMEDADWDLVYQVHVEGAYKVTRAAWPHLREQAYGRVVFTSSTSGIYGNFGQSNYGMAKLGLYGLTRTLALEGRKNNILVNAIAPTGGTRMTEGLIPPQVFEQLKPELVSPLVVYLGSSACEDTSGLYEVGGGWIGKVRWERSLGFGFDPKAGFDAEDVAAHWQQICDFENAAHPADNVEALREMMANLQKHAL
>NC_002516.2|NP_252116.1|3835578_3836349_-|enoyl-CoA-hydratase
MSVIVERNGPVTTLVIARPERRNAVDRPTAQALADALREFEADDTARVAVLTGSGGNFCAGADLAAVAEDGERRNRLEAEGDGPMGPSRMQLGKPLIAAIEGYAVAGGLELALLADLRVMAEDAICGVFCRRFGVPLIDGGSVRLPRIVGQGRALDLILTGRPVKADEALQIGLANRVVPSGSARAEAEELAAELAAFPQTCMLADRASVYAQWELSFDVALANEFQGGLAVIESGETLEGAQRFKDGEGRHGRFE
>NC_002516.2|NP_252115.1|3835214_3835559_+|hypothetical-protein
MALTLLKNTAGADLGAASPVAVPLGEPVAQTRAYAVERTDQVETGIWECTPGRWRRQIVEQEFCHFLQGRCTFTPDGGETIRIEAGDALLLPENSLGVWDVQETVRKSYVIIHR
>NC_002516.2|NP_252114.1|3833773_3835180_+|hypothetical-protein
MSAWRHLSLWMNQLDDPLEARPSLEESLEVDVAIVGAGYTGLWTAYYLKRRAPQLRVAIVEAETAGFGASGRNGGWLMGNLLGEDGLLAGLPPERRRAGYDLLHGIPDEVARVLQEEGIDCDYRKGGVLYCAARYPEQERRLRAYLHDLYAEGLDESDYRWLTPQELDQQLRIPGSYGAIHSPHCATIQPARLARGLARAVERLGVRLFEKSRVLHWQRGLLRTERGELRAEWIVPAVEGYAASLPPLGHYQLPVQSLLVATEPLPSSVWAEIGLERGQAFSEFSRQVTYGQRTADDRLAFGARGGYRFGGKLRSDFSLDDEEVGLRRYLFGELFPLLKDARISHTWGGNLGMARRFRPHMLLDRASGIALSGGYGGEGVGASNLGGRTLAALILGEDSELLRQPWVLGERPLDSLARWEPEPCRWLGYNAIIRSFVHEDRVLADPHSAPWRRSLAQTLAAGMESLMR
>NC_002516.2|NP_252113.1|3832939_3833683_+|transcriptional-regulator
MRYHLSWKHRDIDAVMALYHPEVEYNDFFQNRRMRLADLREYVEATMPKGPDESLEHTDRIRFDGDTAFIQYRLRVTLSGRLASFRASEAITVRDGLIWRINEYASLVHESGGGAQAGGDGRPPASRLGLSAKQLSLLARDLEHYFQQAQPYLDPDLDLTQVANATGYTRNQISYLLNQVLGLSFYQYVNQTRLQHLLGQLSGELPGRVDELAFAAGFNSLSAFYRCFRQHTGQSPREYLKRLSSRR
>NC_002516.2|NP_252124.1|3842273_3843290_-|transposase
MNLSRIGLDLAKQVFQVHGVDRHEHVVCRRQLKRAQVRDFFRQLPPCLVAMEACGSAHYWARELRELGHTVRLIAPQFVKPYVKGDKHDAHDAEAICEAASRPSMRYVPVKSAEQQAVQSMHRVRSRLVRARTALCNEVRGLLGEFGLIATRRGRAATMALLETVMATEPAPLPAPMGELLRELKDELQTLEARIARLERQIQAHVRGDARIQRLLAVEGIGPISASAVAASAGDARQFRTGRQFAAWLGLVPRQHSTGGQQRLGNISKRGDTYLRTLLIHGARAVVRCCANKTDARSRWLQGLLQRRPANVVAVALANKNARILWALLSRETCYRPG
>NC_002516.2|NP_252125.1|3843652_3844105_-|flavodoxin
MKVAILSGSVYGTAEEVARHAQKLLSAAGLEASHLPRASLDELKAFAPEAFLVVTSTTGMGELPDNLQPLYYAIRDQLPAWHGLPGGVIGLGDSSYGDTFCGGGEQVRELFGELGVREVLPMLRLDASETVTPETDAEPWLAEFAAALKG
>NC_002516.2|NP_252126.1|3844384_3844942_+|hypothetical-protein
MSTAPVTLLVARRVAAGRYRDFLAWQREGEALAADFPGYLGSGALAPPAGGDEFQMIFRFADDATLAAWAHSASRQAWLERGQGLFDEPREHRAHGLAAWFDDNRKPPRWKQSVAIWLAFFPVSLAFNLGAGPYLGELSLAARVLLSTLVLTPLMTYWFIPLSSRLLAPWLHRRPQRAASLPEAH
>NC_002516.2|NP_252127.1|3845052_3845757_+|short-chain-dehydrogenase
MATAPILITGASQRVGLHCARRLLADGESVIVSYRSERPALDELRQAGALTLHADFASEAGIFAFIGALRQHTDSLRAIVHNASDWVAETPGHEAEAFQQLFSVHMLAPYLINLHCAELLERSQPADIVHLTDDVARKGSARRIAYCASKAGLDNLTLSFAARFAPRIKVNAISPALVMFNDGDDAEYRARTLAKSALGIEPGPEVIYQSLRYLLDNPYVTGTTLTVNGGRHVK
>NC_002516.2|NP_252128.1|3845774_3846335_+|GTP-cyclohydrolase-I
MNPALSQHYREILVGLGEDPQREGLLDTPKRAAKAMQYLCHGYGQTLEEIVNGALFASDNDEMVIVRDIELYSLCEHHLLPFIGKAHVAYIPTGKVLGLSKVARIVDMFARRLQIQENLTRQIAEAVRQVTSAAGVAVVIEAQHMCMMMRGVEKQNSQMFTSVMLGAFRDSNTTRQEFLQLIGRSK
>NC_002516.2|NP_252129.1|3846336_3846708_+|D-erythro-7,8-dihydroneopterin-triphosphate-2'-epimerase
MPRLEPGMARIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIRHVEENRFALLERMTQEILDLVMENPAVRYAEVEVDKPHALRFAESVSITLAGHR
>NC_002516.2|NP_252130.1|3846836_3847148_+|hypothetical-protein
MTAANLTEQQRLELEAAAFRTLVHHLQTRKDVQNIDLMNLAGFCRNCLSKWYKAAADDLGVEVSNDQAREEIYGMPYAEWKAKYQKEASPEQQAAFAKSQGNA
>NC_002516.2|YP_008719767.1|3847199_3847538_+|type-III-effector-protein
MTLTDFRARLRSEHHLFTDTLAFIAEHYSYTPSAFDNGSVSNPAGQNEGSCKTLGFAILEGLSLEETLLAFGEHYRAVRDNPEGDDHANIRALQQTGLAGVHFERQPLSRRG
>NC_002516.2|NP_252131.1|3847717_3847933_-|molybdopterin-binding-protein
MTIKAINVRNQFKGTVKEIIEGPVLSEIDVQTAAGIVTSVITTRSVKELELAIGSEVIAFVKSTEVSIAKL
>NC_002516.2|NP_252132.1|3847973_3848798_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-subunit
MNAHNAALGGTPQRLKRGIPLALRGVARRFGEREVLKDIDLLVPAGQFVAIVGRSGCGKSTLLRLLAGLDQPSRGELLAGSAALAEAREDTRLMFQDSRLLPWKRVIDNVGLGLRGDWRAKALQALRAVGLAERANEWPAALSGGQKQRVALARALIHEPRLLLLDEPLGALDALTRIEMQQLIEGLWREHGFTVLLVTHDVSEAVAVADRVILIEDGEIGLDLPVELPRPRSRGSARLAALEAEVLNRVLAQPELPPQPEPVSPLPTQLRWAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_002516_2	2.2\|3841882\|51\|NC_002516\|PILER-CR	3841882-3841932	51	NC_002516.2	3843429-3843479	0	1.0
NC_002516_2	2.2\|3841882\|51\|NC_002516\|PILER-CR	3841882-3841932	51	NC_002516.2	3843530-3843580	0	1.0

1. spacer 2.2|3841882|51|NC_002516|PILER-CR matches to position: 3843429-3843479, mismatch: 0, identity: 1.0

cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	CRISPR spacer
cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	Protospacer
***************************************************

2. spacer 2.2|3841882|51|NC_002516|PILER-CR matches to position: 3843530-3843580, mismatch: 0, identity: 1.0

cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	CRISPR spacer
cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	Protospacer
***************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_002516_2	2.1\|3841778\|54\|NC_002516\|PILER-CR	3841778-3841831	54	MK511017	Pseudomonas phage CF23, partial genome	32-85	4	0.926

1. spacer 2.1|3841778|54|NC_002516|PILER-CR matches to MK511017 (Pseudomonas phage CF23, partial genome) position: , mismatch: 4, identity: 0.926

cagctcggcagaggctacggcggataacgcctgggggcgttattcgccctaccg	CRISPR spacer
ccccacagcagaggctacggcggataacgcctgggggcgttattcgccctaccg	Protospacer
*  * *.***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

673190 : 705966

Pseudomonas_phage(48.48%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_249302.1\|673190_673961_-	HTH-type transcriptional regulator PrtR	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
NP_249303.1\|674418_674619_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
NP_249304.1\|674666_675026_+	hypothetical protein	NA	NA	NA	NA
NP_249305.1\|675389_675839_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
NP_249306.1\|675860_676376_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
NP_249307.1\|676372_676930_+	hypothetical protein	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
NP_249308.1\|677082_677409_+	bacteriophage protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.4e-30	60.2
NP_249309.1\|677405_678293_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
NP_249310.1\|678285_678819_+	bacteriophage protein	Q9ZXK7	Pseudomonas_virus	3.0e-62	64.6
NP_249311.1\|678820_680896_+	bacteriophage protein	Q9ZXK6	Pseudomonas_virus	5.1e-198	50.2
NP_249312.1\|680892_681351_+	hypothetical protein	NA	NA	NA	NA
NP_249313.1\|681393_682554_+	bacteriophage protein	Q38068	Phage_PS17	2.0e-188	83.2
NP_249314.1\|682566_683070_+	bacteriophage protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
NP_249315.1\|683084_683429_+	hypothetical protein	NA	NA	NA	NA
NP_249316.1\|683598_685836_+	hypothetical protein	NA	NA	NA	NA
NP_249317.1\|685845_686718_+	hypothetical protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-74	51.4
NP_249318.1\|686692_686899_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
NP_249319.1\|686956_687946_+	hypothetical protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
NP_249320.1\|687978_688608_+	hypothetical protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
NP_249321.1\|688604_688967_+	hypothetical protein	H2BDA0	Pseudomonas_phage	1.9e-15	47.9
NP_249322.1\|688963_689221_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
NP_249324.1\|689536_690031_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
NP_249325.1\|690042_690390_+	hypothetical protein	NA	NA	NA	NA
NP_249326.1\|690419_690674_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
NP_249327.1\|690720_692556_+	hypothetical protein	A0A0S2SYD9	Pseudomonas_phage	1.2e-28	36.2
NP_249328.1\|692548_692890_+	hypothetical protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
NP_249329.1\|692897_693593_+	bacteriophage protein	A0A1B0VNE0	Pseudomonas_phage	9.7e-69	49.8
NP_249330.1\|693595_694366_+	hypothetical protein	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
NP_249331.1\|694420_695023_+	bacteriophage protein	A0A1V0E8A0	Vibrio_phage	2.2e-53	57.8
NP_249332.1\|695081_698696_+	bacteriophage protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	54.7
NP_249334.1\|699743_700835_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-46	36.9
NP_249335.1\|700834_701170_+	hypothetical protein	NA	NA	NA	NA
NP_249336.1\|701150_701381_+	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	3.3e-18	62.7
NP_249337.1\|701476_702529_+	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	4.6e-62	52.2
NP_249338.1\|702528_702831_+	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
NP_249339.1\|702827_703058_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	8.2e-25	71.6
NP_249340.1\|703476_704082_+	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
NP_249341.1\|704083_705133_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
NP_249342.1\|705129_705966_+	indole-3-glycerol phosphate synthase	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

789359 : 796776

Pseudomonas_phage(100.0%)

coat,integrase

attL 785311:785337|attR 797721:797747

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
785311:785337	attL	NA	NA	NA	NA
NP_249409.1\|789359_789650_+	hypothetical protein	Q56VP7	Pseudomonas_phage	7.4e-55	96.9
NP_249410.1\|789653_790031_+	hypothetical protein	Q56VP6	Pseudomonas_phage	9.9e-60	97.6
NP_249411.1\|790165_790600_+	helix destabilizing protein of bacteriophage Pf1	Q56VP5	Pseudomonas_phage	5.1e-60	86.1
NP_249412.1\|790616_790709_+	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
NP_249413.1\|790721_790973_+	hypothetical protein	NA	NA	NA	NA
NP_249414.1\|790985_791234_+\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	92.7
NP_249415.1\|791369_792632_+\|coat	phage coat protein A	Q56VP1	Pseudomonas_phage	6.7e-52	56.0
NP_249416.1\|792636_792993_+	hypothetical protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
NP_249417.1\|792996_794271_+	hypothetical protein	Q56VN9	Pseudomonas_phage	2.1e-202	88.7
NP_249418.1\|794500_795793_+	hypothetical protein	Q56VN8	Pseudomonas_phage	2.8e-247	94.2
NP_249419.1\|795792_796776_+\|integrase	bacteriophage integrase	Q56VN7	Pseudomonas_phage	4.7e-93	52.6
797721:797747	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2947802 : 2954696

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_251294.1\|2947802_2948471_+	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
NP_251295.1\|2948581_2948977_+	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
NP_251296.1\|2948973_2949333_+	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
NP_251297.1\|2949332_2949638_+	hypothetical protein	NA	NA	NA	NA
NP_251298.1\|2949634_2949970_+	hypothetical protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
NP_251299.1\|2949966_2950950_+	hypothetical protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
NP_251300.1\|2951037_2952012_+	hypothetical protein	NA	NA	NA	NA
NP_251301.1\|2952016_2953414_-	siroheme synthase	NA	NA	NA	NA
NP_251302.1\|2953415_2954696_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4

DBSCAN-SWA_4

4051563 : 4060592

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_252307.1\|4051563_4052604_-	recombinase A	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5
NP_252308.1\|4052737_4053244_-	hypothetical protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
NP_252309.1\|4053391_4054399_+	hypothetical protein	NA	NA	NA	NA
NP_252310.1\|4054524_4057092_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
NP_252311.1\|4057158_4057482_+	ferredoxin I	NA	NA	NA	NA
NP_252312.1\|4057908_4058913_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
NP_252313.1\|4059017_4059911_-	hypothetical protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
NP_252314.1\|4059956_4060592_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_002516

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection