CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_003197	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	0	39	10	0
NC_003277	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid pSLT, complete sequence	0 crisprs	cas14j	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_003197_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003197_1

2885592-2885701

Orphan

Consensus_repeat	Method
TTAAAAAAAGGTGGTACAGGGTGGGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003197_1

>merge|NC_003197|1|2885592-2885701|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACAAGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGATTAAAAAAAAGTGGTACAGGGTGGGACA

>NC_003197|1|1|2885592-2885701|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACA	AGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGA
TTAAAAAAAAGTGGTACAGGGTGGGACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003197.2\|NP_461667.1\|2878172_2879237_+\|Fels-2-prophage-protein	unknown	unknown	gnl\|CDD\|170049
NC_003197.2\|NP_461670.1\|2881975_2882803_-\|putative-cytoplasmic-protein	unknown	unknown	unknown
NC_003197.2\|NP_461676.1\|2888827_2889112_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NC_003197.2\|NP_461665.1\|2876182_2876815_+\|Fels-2-prophage-protein	unknown	unknown	gnl\|CDD\|374550
NC_003197.2\|NP_461677.1\|2889224_2889746_+\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NC_003197.2\|NP_461674.1\|2887404_2888223_+\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|373095
NC_003197.2\|NP_461680.1\|2891104_2892118_+\|putative-dehydrogenase	unknown	unknown	gnl\|CDD\|223745
NC_003197.2\|NP_461666.1\|2876818_2877844_+\|Fels-2-prophage-protein	unknown	unknown	gnl\|CDD\|222904
NC_003197.2\|NP_461678.1\|2889742_2890117_+\|PTS-sorbitol-transporter	unknown	unknown	gnl\|CDD\|226254
NC_003197.2\|NP_461671.1\|2883253_2883469_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NC_003197.2\|NP_461681.1\|2892412_2893615_+\|hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|379021
NC_003197.2\|NP_461663.1\|2875281_2875791_-\|Fels-2-prophage-protein	unknown	unknown	gnl\|CDD\|369127
NC_003197.2\|NP_461664.1\|2875826_2876066_-\|Fels-2-prophage-protein	unknown	unknown	unknown
NC_003197.2\|NP_461669.1\|2880447_2881641_+\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|376935
NC_003197.2\|NP_461682.1\|2893688_2894324_-\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NC_003197.2\|NP_461679.1\|2890113_2891094_+\|PTS-sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NC_003197.2\|NP_461672.1\|2883504_2885574_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227806
NC_003197.2\|NP_461675.1\|2888376_2888733_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_003197.2\|NP_461673.1\|2886076_2887360_+\|putative-excinuclease-ATPase-subunit	unknown	unknown	gnl\|CDD\|226459
NC_003197.2\|NP_461668.1\|2879464_2880058_+\|putative-periplasmic-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003197.2\|NP_461666.1\|2876818_2877844_+\|Fels-2-prophage-protein	gnl\|CDD\|222904	PHA02601, int, integrase; Provisional.	0
NC_003197.2\|NP_461663.1\|2875281_2875791_-\|Fels-2-prophage-protein	gnl\|CDD\|369127	pfam06892, Phage_CP76, Phage regulatory protein CII (CP76). This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny.	4.55954e-86
NC_003197.2\|NP_461667.1\|2878172_2879237_+\|Fels-2-prophage-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.47537e-117
NC_003197.2\|NP_461676.1\|2888827_2889112_+\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
NC_003197.2\|NP_461665.1\|2876182_2876815_+\|Fels-2-prophage-protein	gnl\|CDD\|374550	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain. The C-terminal domain of the CI repressor functions in oligomer formation.	1.49283e-43
NC_003197.2\|NP_461677.1\|2889224_2889746_+\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
NC_003197.2\|NP_461674.1\|2887404_2888223_+\|putative-cytoplasmic-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
NC_003197.2\|NP_461680.1\|2891104_2892118_+\|putative-dehydrogenase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
NC_003197.2\|NP_461675.1\|2888376_2888733_-\|putative-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
NC_003197.2\|NP_461678.1\|2889742_2890117_+\|PTS-sorbitol-transporter	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
NC_003197.2\|NP_461671.1\|2883253_2883469_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
NC_003197.2\|NP_461681.1\|2892412_2893615_+\|hexulose-6-phosphate-synthase	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
NC_003197.2\|NP_461669.1\|2880447_2881641_+\|putative-cytoplasmic-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07
NC_003197.2\|NP_461682.1\|2893688_2894324_-\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
NC_003197.2\|NP_461679.1\|2890113_2891094_+\|PTS-sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
NC_003197.2\|NP_461672.1\|2883504_2885574_+\|hypothetical-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NC_003197.2\|NP_461673.1\|2886076_2887360_+\|putative-excinuclease-ATPase-subunit	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	0

>NC_003197.2|NP_461672.1|2883504_2885574_+|hypothetical-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>NC_003197.2|NP_461671.1|2883253_2883469_+|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>NC_003197.2|NP_461670.1|2881975_2882803_-|putative-cytoplasmic-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>NC_003197.2|NP_461669.1|2880447_2881641_+|putative-cytoplasmic-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>NC_003197.2|NP_461668.1|2879464_2880058_+|putative-periplasmic-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>NC_003197.2|NP_461667.1|2878172_2879237_+|Fels-2-prophage-protein
MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSRQDRRRRSFSP
>NC_003197.2|NP_461666.1|2876818_2877844_+|Fels-2-prophage-protein
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
>NC_003197.2|NP_461665.1|2876182_2876815_+|Fels-2-prophage-protein
MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIVAPSIKHVELKNGELQPSDEILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARVPGNKIVVHQDETSFECSVDDIEAIGRAVKVIKSL
>NC_003197.2|NP_461664.1|2875826_2876066_-|Fels-2-prophage-protein
MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGQLAKYMVKKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVG
>NC_003197.2|NP_461663.1|2875281_2875791_-|Fels-2-prophage-protein
MFDYKISKHPHFDEACRVFALRHNMAKLAERAGMKVQTLRNKLNPEQPHQLTPSEIWLLTDLTEDSTLVDGFLAQIHCLPCVPMNEVAKEKLPHYVMSATAEIGRIAAGAVSGDVKTTAGRRDVISSINSVTRLMALAAVSIQARLQANPAMASAVDTVTGLGASFGLI
>NC_003197.2|NP_461673.1|2886076_2887360_+|putative-excinuclease-ATPase-subunit
MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKIIDNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLNKNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDFLDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFPARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYSTVLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERISLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNEFSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ
>NC_003197.2|NP_461674.1|2887404_2888223_+|putative-cytoplasmic-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>NC_003197.2|NP_461675.1|2888376_2888733_-|putative-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>NC_003197.2|NP_461676.1|2888827_2889112_+|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NC_003197.2|NP_461677.1|2889224_2889746_+|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>NC_003197.2|NP_461678.1|2889742_2890117_+|PTS-sorbitol-transporter
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>NC_003197.2|NP_461679.1|2890113_2891094_+|PTS-sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NC_003197.2|NP_461680.1|2891104_2892118_+|putative-dehydrogenase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>NC_003197.2|NP_461681.1|2892412_2893615_+|hexulose-6-phosphate-synthase
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA
>NC_003197.2|NP_461682.1|2893688_2894324_-|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH

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Crispr_ID: NC_003197_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003197_2

3076618-3078154

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACT	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

24 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_003197_2

>merge|NC_003197|2|3076618-3078154|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCACCTCGAAACGGTTTTAAAACACTACCGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGAAAGTGCCGGTAGTGCCTGATGAACGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCCCACTTCCGTAAAATACAGATAATCCACGGTTTATCCCCGCTGGCGCGGGGAACACGGTAATTTCTCATCTAACAGCCTGTACGCCTCAGGTTTATCCCCGCTGGCGCGGGGAACACGAATCTAATGCAACAGATGAATAAACACGTAACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCGTCAATGCGAAATTTTCCGCGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCCCATTCACCAACAACAATATCGCCCTGCAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACGCGGTTTATCCCCGCTGGCGCGGGGAACACACTTCCTTCAGTCTTAACGATAATCCGCAACGCGGTTTATCCCCGCTGGCGCGGGGAACACGCAAAATAGCGATGAGCTGGCTACGCCCACTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGGGATAGGAGTTACGATCCAGCCTGGTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003197|2|2|3076618-3077013|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NC_003197|2|1|3076618-3077012|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NC_003197|2|1|3076679-3076891|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACACG	CGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACACT	AGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACACT	CTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACCCAGAAAGTGCCGGT	AGTGCCTGATGAACGACCGGTTTATCCCCGCT
GGCGCGGGGAACACCGCGCCCACTTCCGT	AAAATACAGATAATCCACGGTTTATCCCCGCT
GGCGCGGGGAACACGGTAATTTCTCATCT	AACAGCCTGTACGCCTCAGGTTTATCCCCGCT
GGCGCGGGGAACACGAATCTAATGCAACA	GATGAATAAACACGTAACGGTTTATCCCCGCT
GGCGCGGGGAACACTCTTTATCGTCAATG	CGAAATTTTCCGCGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCCCATTCACCAACA	ACAATATCGCCCTGCAACGGTTTATCCCCGCT
GGCGCGGGGAACACCGTTGCGTCAGGTTG	ATCCAGTGCGTCAGCGGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCTCGGTCTCGGTCT	CGGTCTCGGTAGTGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACACTTCCTTCAGTCTT	AACGATAATCCGCAACGCGGTTTATCCCCGCT
GGCGCGGGGAACACGCAAAATAGCGATGA	GCTGGCTACGCCCACTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGAGGGGATAGGAGTT	ACGATCCAGCCTGGTTGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCAA	TCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCAA	TCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATTA	TTTACTGTCGTTGCTCACGGTTTATCCCCGCT


>NC_003197|2|2|3076984-3078154|PILER-CR
	CGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACACT	AGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACACT	CTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACCCAGAAAGTGCCGGT	AGTGCCTGATGAACGACCGGTTTATCCCCGCT
GGCGCGGGGAACACCGCGCCCACTTCCGT	AAAATACAGATAATCCACGGTTTATCCCCGCT
GGCGCGGGGAACACGGTAATTTCTCATCT	AACAGCCTGTACGCCTCAGGTTTATCCCCGCT
GGCGCGGGGAACACGAATCTAATGCAACA	GATGAATAAACACGTAACGGTTTATCCCCGCT
GGCGCGGGGAACACTCTTTATCGTCAATG	CGAAATTTTCCGCGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCCCATTCACCAACA	ACAATATCGCCCTGCAACGGTTTATCCCCGCT
GGCGCGGGGAACACCGTTGCGTCAGGTTG	ATCCAGTGCGTCAGCGGCGGTTTATCCCCGCT
GGCGCGGGGAACACTCTCGGTCTCGGTCT	CGGTCTCGGTAGTGACGCGGTTTATCCCCGCT
GGCGCGGGGAACACACTTCCTTCAGTCTT	AACGATAATCCGCAACGCGGTTTATCCCCGCT
GGCGCGGGGAACACGCAAAATAGCGATGA	GCTGGCTACGCCCACTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGAGGGGATAGGAGTT	ACGATCCAGCCTGGTTGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCAA	TCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCAA	TCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATTA	TTTACTGTCGTTGCTCACGGTTTATCCCCGCT
GGCGCGGGGAACAC

>NC_003197|2|2|3077026-3078154|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003197|2|3|3077087-3078154|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003197.2\|NP_461867.1\|3088195_3088930_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_003197.2\|NP_461858.1\|3078250_3078547_-\|putative-inner-membrane-protein	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_003197.2\|NP_461861.1\|3080092_3080839_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_003197.2\|NP_461850.1\|3070272_3070752_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_003197.2\|NP_461860.1\|3079460_3080111_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_003197.2\|NP_461853.3\|3071982_3072339_-\|putative-inner-membrane-protein	unknown	unknown	gnl\|CDD\|371891
NC_003197.2\|NP_461865.1\|3084046_3086710_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_003197.2\|NP_461859.1\|3078543_3079464_-\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_003197.2\|NP_461864.1\|3082478_3084035_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_003197.2\|NP_461851.1\|3070751_3071462_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_003197.2\|NP_461857.1\|3075556_3076603_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_003197.2\|NP_461854.1\|3072356_3072962_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_003197.2\|NP_461866.1\|3087154_3088108_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
NC_003197.2\|NP_461863.1\|3081921_3082482_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_003197.2\|NP_461849.1\|3069226_3070276_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_003197.2\|NP_461848.1\|3068484_3069246_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_003197.2\|NP_461856.1\|3074397_3075306_-\|sulfate-adenylyltransferase-small-subunit	unknown	unknown	gnl\|CDD\|235375
NC_003197.2\|NP_461855.1\|3072948_3074388_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_003197.2\|NP_461862.1\|3080849_3081908_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_003197.2\|NP_461852.1\|3071480_3071792_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156

Protein	Function_ID	Function_description	E-value
NC_003197.2\|NP_461867.1\|3088195_3088930_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NC_003197.2\|NP_461858.1\|3078250_3078547_-\|putative-inner-membrane-protein	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.94613e-62
NC_003197.2\|NP_461861.1\|3080092_3080839_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NC_003197.2\|NP_461850.1\|3070272_3070752_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NC_003197.2\|NP_461860.1\|3079460_3080111_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NC_003197.2\|NP_461853.3\|3071982_3072339_-\|putative-inner-membrane-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NC_003197.2\|NP_461865.1\|3084046_3086710_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NC_003197.2\|NP_461859.1\|3078543_3079464_-\|subtype-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NC_003197.2\|NP_461864.1\|3082478_3084035_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_003197.2\|NP_461851.1\|3070751_3071462_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NC_003197.2\|NP_461857.1\|3075556_3076603_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_003197.2\|NP_461854.1\|3072356_3072962_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_003197.2\|NP_461866.1\|3087154_3088108_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_003197.2\|NP_461863.1\|3081921_3082482_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NC_003197.2\|NP_461849.1\|3069226_3070276_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_003197.2\|NP_461848.1\|3068484_3069246_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_003197.2\|NP_461856.1\|3074397_3075306_-\|sulfate-adenylyltransferase-small-subunit	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_003197.2\|NP_461855.1\|3072948_3074388_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_003197.2\|NP_461862.1\|3080849_3081908_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NC_003197.2\|NP_461852.1\|3071480_3071792_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64

>NC_003197.2|NP_461857.1|3075556_3076603_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_003197.2|NP_461856.1|3074397_3075306_-|sulfate-adenylyltransferase-small-subunit
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_003197.2|NP_461855.1|3072948_3074388_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_003197.2|NP_461854.1|3072356_3072962_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_003197.2|NP_461853.3|3071982_3072339_-|putative-inner-membrane-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_003197.2|NP_461852.1|3071480_3071792_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_003197.2|NP_461851.1|3070751_3071462_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_003197.2|NP_461850.1|3070272_3070752_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_003197.2|NP_461849.1|3069226_3070276_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_003197.2|NP_461848.1|3068484_3069246_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_003197.2|NP_461858.1|3078250_3078547_-|putative-inner-membrane-protein
MMSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NC_003197.2|NP_461859.1|3078543_3079464_-|subtype-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NC_003197.2|NP_461860.1|3079460_3080111_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NC_003197.2|NP_461861.1|3080092_3080839_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_003197.2|NP_461862.1|3080849_3081908_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NC_003197.2|NP_461863.1|3081921_3082482_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_003197.2|NP_461864.1|3082478_3084035_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NC_003197.2|NP_461865.1|3084046_3086710_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NC_003197.2|NP_461866.1|3087154_3088108_+|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_003197.2|NP_461867.1|3088195_3088930_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NC_003197_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003197_3

3094286-3096267

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

32 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NC_003197_3

>merge|NC_003197|3|3094286-3096267|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCGCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACTAAACAGCCTGACCGTTGAGGATCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACGTGGACGAGGAGTTACTCAACCGCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCCACATGGCCCACCGGCACCACCCGATCCGGTTTATCCCCGCTGGCGCGGGGAACACAAATGACCAAATCAGAAATCTTCACCAAAGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAAGTCAAACGGTTCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCCGGGGGTTATATAGTTATTTAATGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCAACTGTCAGTTCGTCGTTAGCCAGTAATTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGAAAACGCATGGAATCCGGTATAAACAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACGATGTAACTGATAGCGAAATATATTGGGATAACGGTTTATCCCCGCTGGCGCGGGGAACACGAAACGTAAACAGGGTAAGATACAACTCTGCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003197|3|4|3094286-3096267|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003197|3|3|3094286-3096267|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_003197|3|3|3094347-3096267|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGGCGTCGGTTTTTTCAGGTTTAGGTCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCAACTGTCAGTTCGTCGTTAGCCAGTAATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAAACGCATGGAATCCGGTATAAACAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003197.2\|NP_461867.1\|3088195_3088930_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_003197.2\|NP_461871.1\|3093390_3094188_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_003197.2\|NP_461875.1\|3100616_3101417_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_003197.2\|NP_461874.1\|3098751_3100389_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_003197.2\|NP_461869.1\|3090717_3092517_-\|sulfite-reductase-[NADPH]-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
NC_003197.2\|NP_461880.1\|3109325_3110468_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NC_003197.2\|NP_461865.1\|3084046_3086710_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_003197.2\|NP_461881.1\|3110545_3111886_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NC_003197.2\|NP_461868.1\|3089005_3090718_-\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
NC_003197.2\|NP_461879.1\|3106525_3109282_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NC_003197.2\|NP_461870.1\|3092940_3093303_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_003197.2\|NP_461864.1\|3082478_3084035_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_003197.2\|NP_461873.1\|3097370_3098669_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_003197.2\|NP_461863.1\|3081921_3082482_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_003197.2\|NP_461878.1\|3105172_3106468_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase	unknown	unknown	gnl\|CDD\|237291
NC_003197.2\|NP_461862.1\|3080849_3081908_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_003197.2\|NP_461876.3\|3102446_3102803_-\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	unknown	unknown	gnl\|CDD\|226136
NC_003197.2\|NP_461877.1\|3102886_3105121_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_003197.2\|NP_461872.1\|3096563_3097235_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_003197.2\|NP_461866.1\|3087154_3088108_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NC_003197.2\|NP_461867.1\|3088195_3088930_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NC_003197.2\|NP_461871.1\|3093390_3094188_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.10968e-101
NC_003197.2\|NP_461875.1\|3100616_3101417_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NC_003197.2\|NP_461874.1\|3098751_3100389_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_003197.2\|NP_461869.1\|3090717_3092517_-\|sulfite-reductase-[NADPH]-flavoprotein-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_003197.2\|NP_461880.1\|3109325_3110468_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NC_003197.2\|NP_461865.1\|3084046_3086710_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NC_003197.2\|NP_461881.1\|3110545_3111886_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NC_003197.2\|NP_461868.1\|3089005_3090718_-\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_003197.2\|NP_461879.1\|3106525_3109282_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NC_003197.2\|NP_461870.1\|3092940_3093303_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_003197.2\|NP_461864.1\|3082478_3084035_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_003197.2\|NP_461873.1\|3097370_3098669_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_003197.2\|NP_461863.1\|3081921_3082482_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NC_003197.2\|NP_461878.1\|3105172_3106468_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NC_003197.2\|NP_461862.1\|3080849_3081908_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NC_003197.2\|NP_461876.3\|3102446_3102803_-\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NC_003197.2\|NP_461877.1\|3102886_3105121_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_003197.2\|NP_461872.1\|3096563_3097235_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_003197.2\|NP_461866.1\|3087154_3088108_+\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NC_003197.2|NP_461871.1|3093390_3094188_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRSYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_003197.2|NP_461870.1|3092940_3093303_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_003197.2|NP_461869.1|3090717_3092517_-|sulfite-reductase-[NADPH]-flavoprotein-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_003197.2|NP_461868.1|3089005_3090718_-|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_003197.2|NP_461867.1|3088195_3088930_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_003197.2|NP_461866.1|3087154_3088108_+|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_003197.2|NP_461865.1|3084046_3086710_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NC_003197.2|NP_461864.1|3082478_3084035_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NC_003197.2|NP_461863.1|3081921_3082482_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_003197.2|NP_461862.1|3080849_3081908_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NC_003197.2|NP_461872.1|3096563_3097235_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_003197.2|NP_461873.1|3097370_3098669_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_003197.2|NP_461874.1|3098751_3100389_-|CTP-synthase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_003197.2|NP_461875.1|3100616_3101417_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_003197.2|NP_461876.3|3102446_3102803_-|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NC_003197.2|NP_461877.1|3102886_3105121_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NC_003197.2|NP_461878.1|3105172_3106468_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NC_003197.2|NP_461879.1|3106525_3109282_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NC_003197.2|NP_461880.1|3109325_3110468_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NC_003197.2|NP_461881.1|3110545_3111886_-|glucarate-dehydratase
MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003197_2	2.13\|3077193\|32\|NC_003197\|PILER-CR	3077193-3077224	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NC_003197_2	2.13\|3077193\|32\|NC_003197\|PILER-CR	3077193-3077224	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NC_003197_2	2.31\|3077178\|32\|NC_003197\|CRT,CRISPRCasFinder	3077178-3077209	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NC_003197_2	2.31\|3077178\|32\|NC_003197\|CRT,CRISPRCasFinder	3077178-3077209	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NC_003197_3	3.5\|3094559\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3094559-3094590	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NC_003197_3	3.5\|3094559\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3094559-3094590	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NC_003197_3	3.11\|3094926\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3094926-3094957	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NC_003197_2	2.13\|3077193\|32\|NC_003197\|PILER-CR	3077193-3077224	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NC_003197_2	2.31\|3077178\|32\|NC_003197\|CRT,CRISPRCasFinder	3077178-3077209	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NC_003197_2	2.10\|3077013\|28\|NC_003197\|PILER-CR	3077013-3077040	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509804-509835	5	0.844
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509804-509835	5	0.844
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1387347-1387378	5	0.844
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1461559-1461590	5	0.844
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	599340-599371	5	0.844
NC_003197_2	2.15\|3077315\|32\|NC_003197\|PILER-CR	3077315-3077346	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336397-336428	6	0.812
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	254-285	6	0.812
NC_003197_2	2.33\|3077300\|32\|NC_003197\|CRT,CRISPRCasFinder	3077300-3077331	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336397-336428	6	0.812
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	254-285	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121315-121346	6	0.812
NC_003197_2	2.6\|3076952\|32\|NC_003197\|CRISPRCasFinder,CRT	3076952-3076983	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NC_003197_2	2.6\|3076952\|32\|NC_003197\|CRISPRCasFinder,CRT	3076952-3076983	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NC_003197_2	2.6\|3076952\|32\|NC_003197\|CRISPRCasFinder,CRT	3076952-3076983	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NC_003197_2	2.7\|3076709\|31\|NC_003197\|PILER-CR	3076709-3076739	31	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10087	7	0.774
NC_003197_2	2.15\|3077315\|32\|NC_003197\|PILER-CR	3077315-3077346	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NC_003197_2	2.15\|3077315\|32\|NC_003197\|PILER-CR	3077315-3077346	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NC_003197_2	2.15\|3077315\|32\|NC_003197\|PILER-CR	3077315-3077346	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NC_003197_2	2.15\|3077315\|32\|NC_003197\|PILER-CR	3077315-3077346	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NC_003197_2	2.18\|3077498\|32\|NC_003197\|PILER-CR	3077498-3077529	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NC_003197_2	2.18\|3077498\|32\|NC_003197\|PILER-CR	3077498-3077529	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MH509446	Gordonia phage DelRio, complete genome	6223-6254	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MH509446	Gordonia phage DelRio, complete genome	6229-6260	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MT758688	Mycobacterium phage CELFI, complete genome	74684-74715	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_006363	Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence	85980-86011	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	39475-39506	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	10466-10497	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619925-619956	7	0.781
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	117019-117050	7	0.781
NC_003197_2	2.33\|3077300\|32\|NC_003197\|CRT,CRISPRCasFinder	3077300-3077331	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NC_003197_2	2.33\|3077300\|32\|NC_003197\|CRT,CRISPRCasFinder	3077300-3077331	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NC_003197_2	2.33\|3077300\|32\|NC_003197\|CRT,CRISPRCasFinder	3077300-3077331	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NC_003197_2	2.33\|3077300\|32\|NC_003197\|CRT,CRISPRCasFinder	3077300-3077331	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NC_003197_2	2.36\|3077483\|32\|NC_003197\|CRT,CRISPRCasFinder	3077483-3077514	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NC_003197_2	2.36\|3077483\|32\|NC_003197\|CRT,CRISPRCasFinder	3077483-3077514	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MH509446	Gordonia phage DelRio, complete genome	6223-6254	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MH509446	Gordonia phage DelRio, complete genome	6229-6260	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MT758688	Mycobacterium phage CELFI, complete genome	74684-74715	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_006363	Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence	85980-86011	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	39475-39506	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	10466-10497	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619925-619956	7	0.781
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	117019-117050	7	0.781
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	135155-135186	7	0.781
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	195902-195933	7	0.781
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	581076-581107	7	0.781
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	122557-122588	7	0.781
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	529537-529568	7	0.781
NC_003197_3	3.24\|3095719\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095719-3095750	32	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	327444-327475	7	0.781
NC_003197_2	2.2\|3076708\|32\|NC_003197\|CRISPRCasFinder,CRT	3076708-3076739	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NC_003197_2	2.5\|3076891\|32\|NC_003197\|CRISPRCasFinder,CRT	3076891-3076922	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NC_003197_2	2.5\|3076891\|32\|NC_003197\|CRISPRCasFinder,CRT	3076891-3076922	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NC_003197_2	2.17\|3077437\|32\|NC_003197\|PILER-CR	3077437-3077468	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NC_003197_2	2.21\|3077681\|32\|NC_003197\|PILER-CR	3077681-3077712	32	AP013976	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, * SEQUENCING IN PROGRESS *	6246-6277	8	0.75
NC_003197_2	2.21\|3077681\|32\|NC_003197\|PILER-CR	3077681-3077712	32	JX536274	Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence	3959-3990	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336385-336416	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509810-509841	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	JQ807255	Environmental Halophage eHP-36, partial genome	3413-3444	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MH509446	Gordonia phage DelRio, complete genome	6235-6266	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619931-619962	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK359319	Gordonia phage Parada, complete genome	5938-5969	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK359319	Gordonia phage Parada, complete genome	5926-5957	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK376958	Gordonia phage Brylie, complete genome	5938-5969	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK376958	Gordonia phage Brylie, complete genome	5926-5957	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MH399781	Gordonia phage Nadeem, complete genome	5938-5969	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MH399781	Gordonia phage Nadeem, complete genome	5926-5957	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK967392	Gordonia phage GrandSlam, complete genome	5971-6002	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK967392	Gordonia phage GrandSlam, complete genome	5959-5990	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK279893	Gordonia phage WheatThin, complete genome	5938-5969	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK279893	Gordonia phage WheatThin, complete genome	5926-5957	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MT701595	Streptomyces phage Shaeky, complete genome	29602-29633	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_031247	Gordonia phage BetterKatz, complete genome	6191-6222	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_031247	Gordonia phage BetterKatz, complete genome	6179-6210	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK305885	Gordonia phage Mulch, complete genome	5938-5969	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MK305885	Gordonia phage Mulch, complete genome	5926-5957	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	68312-68343	8	0.75
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MG269973	TM7 phage DolZOral124_53_65, complete genome	38250-38281	8	0.75
NC_003197_2	2.35\|3077422\|32\|NC_003197\|CRT,CRISPRCasFinder	3077422-3077453	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NC_003197_2	2.39\|3077666\|32\|NC_003197\|CRT,CRISPRCasFinder	3077666-3077697	32	AP013976	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, * SEQUENCING IN PROGRESS *	6246-6277	8	0.75
NC_003197_2	2.39\|3077666\|32\|NC_003197\|CRT,CRISPRCasFinder	3077666-3077697	32	JX536274	Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence	3959-3990	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336385-336416	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509810-509841	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	JQ807255	Environmental Halophage eHP-36, partial genome	3413-3444	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MH509446	Gordonia phage DelRio, complete genome	6235-6266	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619931-619962	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK359319	Gordonia phage Parada, complete genome	5938-5969	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK359319	Gordonia phage Parada, complete genome	5926-5957	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK376958	Gordonia phage Brylie, complete genome	5938-5969	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK376958	Gordonia phage Brylie, complete genome	5926-5957	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MH399781	Gordonia phage Nadeem, complete genome	5938-5969	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MH399781	Gordonia phage Nadeem, complete genome	5926-5957	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK967392	Gordonia phage GrandSlam, complete genome	5971-6002	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK967392	Gordonia phage GrandSlam, complete genome	5959-5990	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK279893	Gordonia phage WheatThin, complete genome	5938-5969	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK279893	Gordonia phage WheatThin, complete genome	5926-5957	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MT701595	Streptomyces phage Shaeky, complete genome	29602-29633	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_031247	Gordonia phage BetterKatz, complete genome	6191-6222	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_031247	Gordonia phage BetterKatz, complete genome	6179-6210	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK305885	Gordonia phage Mulch, complete genome	5938-5969	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MK305885	Gordonia phage Mulch, complete genome	5926-5957	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	68312-68343	8	0.75
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MG269973	TM7 phage DolZOral124_53_65, complete genome	38250-38281	8	0.75
NC_003197_3	3.8\|3094742\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3094742-3094773	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NC_003197_3	3.8\|3094742\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3094742-3094773	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NC_003197_3	3.13\|3095048\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095048-3095079	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NC_003197_3	3.14\|3095109\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095109-3095140	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NC_003197_3	3.14\|3095109\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095109-3095140	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NC_003197_3	3.14\|3095109\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095109-3095140	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NC_003197_3	3.14\|3095109\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095109-3095140	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NC_003197_3	3.16\|3095231\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095231-3095262	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NC_003197_3	3.16\|3095231\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095231-3095262	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NC_003197_3	3.17\|3095292\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095292-3095323	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NC_003197_3	3.26\|3095841\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095841-3095872	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
NC_003197_3	3.27\|3095902\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095902-3095933	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	79087-79118	8	0.75
NC_003197_2	2.15\|3077315\|32\|NC_003197\|PILER-CR	3077315-3077346	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NC_003197_2	2.20\|3077620\|32\|NC_003197\|PILER-CR	3077620-3077651	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP028537	Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence	45644-45675	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_AP023191	Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence	47035-47066	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MN539017	Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence	71637-71668	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MN539018	Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence	121312-121343	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MT077888	Escherichia coli plasmid p65, complete sequence	47129-47160	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_009838	Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence	46533-46564	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP044306	Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence	130757-130788	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP039170	Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence	69620-69651	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	CP048299	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence	195977-196008	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	CP048303	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence	41265-41296	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP037959	Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence	45076-45107	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP039861	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence	239710-239741	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	45076-45107	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_019114	Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence	43326-43357	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_AP023198	Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence	47035-47066	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	5926-5957	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	240147-240178	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP027411	Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence	73185-73216	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	JQ807227	Environmental Halophage eHP-6, partial genome	2886-2917	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619919-619950	9	0.719
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-279	9	0.719
NC_003197_2	2.33\|3077300\|32\|NC_003197\|CRT,CRISPRCasFinder	3077300-3077331	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NC_003197_2	2.38\|3077605\|32\|NC_003197\|CRT,CRISPRCasFinder	3077605-3077636	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP028537	Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence	45644-45675	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_AP023191	Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence	47035-47066	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MN539017	Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence	71637-71668	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MN539018	Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence	121312-121343	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MT077888	Escherichia coli plasmid p65, complete sequence	47129-47160	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_009838	Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence	46533-46564	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP044306	Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence	130757-130788	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP039170	Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence	69620-69651	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	CP048299	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence	195977-196008	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	CP048303	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence	41265-41296	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP037959	Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence	45076-45107	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP039861	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence	239710-239741	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	45076-45107	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_019114	Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence	43326-43357	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_AP023198	Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence	47035-47066	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	5926-5957	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	240147-240178	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP027411	Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence	73185-73216	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	JQ807227	Environmental Halophage eHP-6, partial genome	2886-2917	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619919-619950	9	0.719
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-279	9	0.719
NC_003197_3	3.10\|3094865\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3094865-3094896	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
NC_003197_3	3.14\|3095109\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095109-3095140	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NC_003197_3	3.14\|3095109\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095109-3095140	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NC_003197_3	3.14\|3095109\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095109-3095140	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NC_003197_3	3.19\|3095414\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095414-3095445	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NC_003197_3	3.21\|3095536\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095536-3095567	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NC_003197_3	3.21\|3095536\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095536-3095567	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NC_003197_3	3.23\|3095658\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095658-3095689	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
NC_003197_3	3.23\|3095658\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095658-3095689	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
NC_003197_3	3.23\|3095658\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095658-3095689	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
NC_003197_2	2.1\|3076647\|32\|NC_003197\|CRISPRCasFinder,CRT	3076647-3076678	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NC_003197_2	2.1\|3076647\|32\|NC_003197\|CRISPRCasFinder,CRT	3076647-3076678	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NC_003197_2	2.13\|3077193\|32\|NC_003197\|PILER-CR	3077193-3077224	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NC_003197_2	2.20\|3077620\|32\|NC_003197\|PILER-CR	3077620-3077651	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NC_003197_2	2.20\|3077620\|32\|NC_003197\|PILER-CR	3077620-3077651	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NC_003197_2	2.20\|3077620\|32\|NC_003197\|PILER-CR	3077620-3077651	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NC_003197_2	2.20\|3077620\|32\|NC_003197\|PILER-CR	3077620-3077651	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NC_003197_2	2.20\|3077620\|32\|NC_003197\|PILER-CR	3077620-3077651	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NC_003197_2	2.21\|3077681\|32\|NC_003197\|PILER-CR	3077681-3077712	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53286	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_KY689633	Escherichia coli strain 100R plasmid p100R, complete sequence	90192-90223	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_KY689632	Escherichia coli strain 19-M12 plasmid p19M12, complete sequence	93444-93475	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP045446	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence	47441-47472	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_KU743384	Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence	181822-181853	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_KU254578	Escherichia coli strain YD786 plasmid pYD786-1, complete sequence	164955-164986	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_KX129782	Escherichia coli strain S38 plasmid pS38, complete sequence	46429-46460	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP015833	Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence	45081-45112	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	LT221036	Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence	41890-41921	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	98508-98539	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP045449	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence	47440-47471	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP015096	Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence	24746-24777	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	MN732922	Escherichia coli strain 49K plasmid unnamed, complete sequence	70876-70907	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP020493	Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence	47996-48027	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	CP031284	Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence	60929-60960	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	CP042895	Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence	106230-106261	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP022735	Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence	61639-61670	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	CP042898	Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence	125697-125728	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP022165	Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence	45079-45110	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP012931	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence	119619-119650	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP023143	Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence	136443-136474	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP026936	Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence	46428-46459	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP025402	Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence	182643-182674	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP026933	Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence	46278-46309	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_MH924589	Escherichia coli strain RDB9 plasmid pRDB9, complete sequence	197026-197057	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_MH208235	Escherichia coli strain APECA2 plasmid pJMA2, complete sequence	166860-166891	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_MK169211	Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence	46091-46122	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	46820-46851	10	0.688
NC_003197_2	2.22\|3077742\|32\|NC_003197\|PILER-CR	3077742-3077773	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	452410-452441	10	0.688
NC_003197_2	2.31\|3077178\|32\|NC_003197\|CRT,CRISPRCasFinder	3077178-3077209	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NC_003197_2	2.38\|3077605\|32\|NC_003197\|CRT,CRISPRCasFinder	3077605-3077636	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NC_003197_2	2.38\|3077605\|32\|NC_003197\|CRT,CRISPRCasFinder	3077605-3077636	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NC_003197_2	2.38\|3077605\|32\|NC_003197\|CRT,CRISPRCasFinder	3077605-3077636	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NC_003197_2	2.38\|3077605\|32\|NC_003197\|CRT,CRISPRCasFinder	3077605-3077636	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NC_003197_2	2.38\|3077605\|32\|NC_003197\|CRT,CRISPRCasFinder	3077605-3077636	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NC_003197_2	2.39\|3077666\|32\|NC_003197\|CRT,CRISPRCasFinder	3077666-3077697	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53286	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_KY689633	Escherichia coli strain 100R plasmid p100R, complete sequence	90192-90223	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_KY689632	Escherichia coli strain 19-M12 plasmid p19M12, complete sequence	93444-93475	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP045446	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence	47441-47472	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_KU743384	Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence	181822-181853	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_KU254578	Escherichia coli strain YD786 plasmid pYD786-1, complete sequence	164955-164986	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_KX129782	Escherichia coli strain S38 plasmid pS38, complete sequence	46429-46460	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP015833	Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence	45081-45112	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	LT221036	Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence	41890-41921	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	98508-98539	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP045449	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence	47440-47471	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP015096	Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence	24746-24777	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	MN732922	Escherichia coli strain 49K plasmid unnamed, complete sequence	70876-70907	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP020493	Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence	47996-48027	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	CP031284	Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence	60929-60960	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	CP042895	Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence	106230-106261	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP022735	Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence	61639-61670	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	CP042898	Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence	125697-125728	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP022165	Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence	45079-45110	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP012931	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence	119619-119650	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP023143	Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence	136443-136474	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP026936	Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence	46428-46459	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP025402	Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence	182643-182674	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP026933	Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence	46278-46309	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_MH924589	Escherichia coli strain RDB9 plasmid pRDB9, complete sequence	197026-197057	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_MH208235	Escherichia coli strain APECA2 plasmid pJMA2, complete sequence	166860-166891	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_MK169211	Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence	46091-46122	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	46820-46851	10	0.688
NC_003197_2	2.40\|3077727\|32\|NC_003197\|CRT,CRISPRCasFinder	3077727-3077758	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	452410-452441	10	0.688
NC_003197_3	3.1\|3094315\|32\|NC_003197\|CRISPRCasFinder,CRT	3094315-3094346	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NC_003197_3	3.4\|3094498\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3094498-3094529	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NC_003197_3	3.18\|3095353\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095353-3095384	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NC_003197_3	3.22\|3095597\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095597-3095628	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NC_003197_3	3.27\|3095902\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095902-3095933	32	NZ_CP042995	Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence	68697-68728	10	0.688
NC_003197_3	3.27\|3095902\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095902-3095933	32	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	43950-43981	10	0.688
NC_003197_3	3.27\|3095902\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095902-3095933	32	NZ_CP038501	Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence	49131-49162	10	0.688
NC_003197_3	3.27\|3095902\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095902-3095933	32	NZ_CP046044	Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence	66631-66662	10	0.688
NC_003197_3	3.27\|3095902\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095902-3095933	32	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	147167-147198	10	0.688
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NC_003197_3	3.20\|3095475\|32\|NC_003197\|CRISPRCasFinder,CRT,PILER-CR	3095475-3095506	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.13|3077193|32|NC_003197|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

2. spacer 2.13|3077193|32|NC_003197|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

3. spacer 2.31|3077178|32|NC_003197|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 2.31|3077178|32|NC_003197|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 3.5|3094559|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 3.5|3094559|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 3.11|3094926|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

8. spacer 2.13|3077193|32|NC_003197|PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

9. spacer 2.31|3077178|32|NC_003197|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

10. spacer 2.10|3077013|28|NC_003197|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

11. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 5, identity: 0.844

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctgggtctcggtctcggtctcggttgtctgg	Protospacer
*** ********************* **   *

12. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 5, identity: 0.844

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctgggtctcggtctcggtctcggttgtctgg	Protospacer
*** ********************* **   *

13. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

14. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

15. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

16. spacer 2.15|3077315|32|NC_003197|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

17. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 6, identity: 0.812

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcggtctcggtc	Protospacer
*************************  .*..

18. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 6, identity: 0.812

tctcggtctcggtctcggtctcg-gtagtgacg	CRISPR spacer
tctcagtctcggtctcagtctcgcgtgggggc-	Protospacer
****.***********.****** **.* *.*

19. spacer 2.33|3077300|32|NC_003197|CRT,CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

20. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 6, identity: 0.812

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcggtctcggtc	Protospacer
*************************  .*..

21. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 6, identity: 0.812

tctcggtctcggtctcggtctcg-gtagtgacg	CRISPR spacer
tctcagtctcggtctcagtctcgcgtgggggc-	Protospacer
****.***********.****** **.* *.*

22. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

36. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

37. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

38. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

39. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

40. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

41. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

42. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

43. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

44. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

--agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
ccaacgc--catggccgacccgcaccacccgacc	Protospacer
  *.***  ******* *** ***********.*

45. spacer 2.6|3076952|32|NC_003197|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

46. spacer 2.6|3076952|32|NC_003197|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

47. spacer 2.6|3076952|32|NC_003197|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

48. spacer 2.7|3076709|31|NC_003197|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 7, identity: 0.774

cgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
ttcaatattggggaaaaacccctcgttacct	Protospacer
.  **** *************** **** *.

49. spacer 2.15|3077315|32|NC_003197|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

50. spacer 2.15|3077315|32|NC_003197|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

51. spacer 2.15|3077315|32|NC_003197|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

52. spacer 2.15|3077315|32|NC_003197|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

53. spacer 2.18|3077498|32|NC_003197|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

54. spacer 2.18|3077498|32|NC_003197|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

55. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgcggtctcggtgccctcg	Protospacer
*.************ **********. .  **

56. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtttcggtctcggtcgcggtctcggtg	Protospacer
*******.************ ****  .*..*

57. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MT758688 (Mycobacterium phage CELFI, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtcccggtcccggtctcggtcccgttg	Protospacer
********.*****.**********  .* .*

58. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_006363 (Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

59. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

60. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

61. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggcctcggcctcggtctcggcctcggcg	Protospacer
******.*****.***********.  .*.**

62. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggcctcggtctcggcggcggcg	Protospacer
.*****.*****.***********..*.*.**

63. spacer 2.33|3077300|32|NC_003197|CRT,CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

64. spacer 2.33|3077300|32|NC_003197|CRT,CRISPRCasFinder matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

65. spacer 2.33|3077300|32|NC_003197|CRT,CRISPRCasFinder matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

66. spacer 2.33|3077300|32|NC_003197|CRT,CRISPRCasFinder matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

67. spacer 2.36|3077483|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

68. spacer 2.36|3077483|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

69. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgcggtctcggtgccctcg	Protospacer
*.************ **********. .  **

70. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtttcggtctcggtcgcggtctcggtg	Protospacer
*******.************ ****  .*..*

71. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MT758688 (Mycobacterium phage CELFI, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtcccggtcccggtctcggtcccgttg	Protospacer
********.*****.**********  .* .*

72. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_006363 (Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

73. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

74. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

75. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggcctcggcctcggtctcggcctcggcg	Protospacer
******.*****.***********.  .*.**

76. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggcctcggtctcggcggcggcg	Protospacer
.*****.*****.***********..*.*.**

77. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

78. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

79. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

80. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

81. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

82. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

83. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

84. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

85. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

86. spacer 3.24|3095719|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
agccccacatggcgcaccggcacggcactagc	Protospacer
*** ********* ********* .* * * *

87. spacer 2.2|3076708|32|NC_003197|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

88. spacer 2.5|3076891|32|NC_003197|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

89. spacer 2.5|3076891|32|NC_003197|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

90. spacer 2.17|3077437|32|NC_003197|PILER-CR matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

91. spacer 2.21|3077681|32|NC_003197|PILER-CR matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

92. spacer 2.21|3077681|32|NC_003197|PILER-CR matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

93. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcgacgacgctt	Protospacer
***********************.....* .

94. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 8, identity: 0.75

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actgggtctgggtctcggtctcggtctcggtt------	Protospacer
      *** *********************

95. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to JQ807255 (Environmental Halophage eHP-36, partial genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
catcggtctcggtctcggtctcggttccagtg	Protospacer
. ***********************  ....*

96. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgcggtc	Protospacer
 *** ********.*********** *.*..

97. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcggcctcggcctcggtctcggcc	Protospacer
.***********.*****.******  .*.*

98. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

99. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

100. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

101. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

102. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

103. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

104. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

105. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

106. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

107. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

108. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MT701595 (Streptomyces phage Shaeky, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggcctcggtctcggtgtcctcg	Protospacer
.*****.*****.************. .  **

109. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

110. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccttcg	Protospacer
*.************  *********. .  **

111. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

112. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

113. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attccgtctcggtctcggtcttggtgctgtag	Protospacer
 .** ****************.***. **  *

114. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MG269973 (TM7 phage DolZOral124_53_65, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg-----	CRISPR spacer
gctcggtctcggtttcggtttcg-----gacgcttgt	Protospacer
 ************.*****.***     ****

115. spacer 2.35|3077422|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

116. spacer 2.39|3077666|32|NC_003197|CRT,CRISPRCasFinder matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

117. spacer 2.39|3077666|32|NC_003197|CRT,CRISPRCasFinder matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

118. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcgacgacgctt	Protospacer
***********************.....* .

119. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 8, identity: 0.75

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actgggtctgggtctcggtctcggtctcggtt------	Protospacer
      *** *********************

120. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to JQ807255 (Environmental Halophage eHP-36, partial genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
catcggtctcggtctcggtctcggttccagtg	Protospacer
. ***********************  ....*

121. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgcggtc	Protospacer
 *** ********.*********** *.*..

122. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcggcctcggcctcggtctcggcc	Protospacer
.***********.*****.******  .*.*

123. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

124. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

125. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

126. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

127. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

128. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

129. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

130. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

131. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

132. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

133. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MT701595 (Streptomyces phage Shaeky, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggcctcggtctcggtgtcctcg	Protospacer
.*****.*****.************. .  **

134. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

135. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccttcg	Protospacer
*.************  *********. .  **

136. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

137. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

138. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attccgtctcggtctcggtcttggtgctgtag	Protospacer
 .** ****************.***. **  *

139. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MG269973 (TM7 phage DolZOral124_53_65, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg-----	CRISPR spacer
gctcggtctcggtttcggtttcg-----gacgcttgt	Protospacer
 ************.*****.***     ****

140. spacer 3.8|3094742|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

141. spacer 3.8|3094742|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

142. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

143. spacer 3.13|3095048|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

144. spacer 3.14|3095109|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

145. spacer 3.14|3095109|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

146. spacer 3.14|3095109|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

147. spacer 3.14|3095109|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

148. spacer 3.16|3095231|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

149. spacer 3.16|3095231|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

150. spacer 3.17|3095292|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

151. spacer 3.26|3095841|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

152. spacer 3.27|3095902|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
gctctcgtgtgttatatagttatttaatgata	Protospacer
*  ..** * ********************

153. spacer 2.15|3077315|32|NC_003197|PILER-CR matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

154. spacer 2.20|3077620|32|NC_003197|PILER-CR matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

155. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

156. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

157. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

158. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

159. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

160. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

161. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

162. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

163. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

164. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

165. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

166. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

167. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

168. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

169. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

170. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

171. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

172. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

173. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to JQ807227 (Environmental Halophage eHP-6, partial genome) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
catcggtctcggtctcggtcccggttccagtg	Protospacer
. ******************.****  ....*

174. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggtctcggcctcggcgtcggtg	Protospacer
.*****.***********.*****.. .*..*

175. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcggtctcagtctcggtctcagtctcgcgt	Protospacer
 *********.***********.**  .*

176. spacer 2.33|3077300|32|NC_003197|CRT,CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

177. spacer 2.38|3077605|32|NC_003197|CRT,CRISPRCasFinder matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

178. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

179. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

180. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

181. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

182. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

183. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

184. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

185. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

186. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

187. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

188. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

189. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

190. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

191. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

192. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

193. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

194. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

195. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

196. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to JQ807227 (Environmental Halophage eHP-6, partial genome) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
catcggtctcggtctcggtcccggttccagtg	Protospacer
. ******************.****  ....*

197. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggtctcggcctcggcgtcggtg	Protospacer
.*****.***********.*****.. .*..*

198. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcggtctcagtctcggtctcagtctcgcgt	Protospacer
 *********.***********.**  .*

199. spacer 3.10|3094865|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********.

200. spacer 3.14|3095109|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

201. spacer 3.14|3095109|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

202. spacer 3.14|3095109|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

203. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

204. spacer 3.19|3095414|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

205. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

206. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

207. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

208. spacer 3.21|3095536|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

209. spacer 3.21|3095536|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

210. spacer 3.23|3095658|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

211. spacer 3.23|3095658|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

212. spacer 3.23|3095658|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

213. spacer 2.1|3076647|32|NC_003197|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

214. spacer 2.1|3076647|32|NC_003197|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

215. spacer 2.13|3077193|32|NC_003197|PILER-CR matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

216. spacer 2.20|3077620|32|NC_003197|PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

217. spacer 2.20|3077620|32|NC_003197|PILER-CR matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

218. spacer 2.20|3077620|32|NC_003197|PILER-CR matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

219. spacer 2.20|3077620|32|NC_003197|PILER-CR matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

220. spacer 2.20|3077620|32|NC_003197|PILER-CR matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

221. spacer 2.21|3077681|32|NC_003197|PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagatt	Protospacer
.   .**.********** **********

222. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_KY689633 (Escherichia coli strain 100R plasmid p100R, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

223. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_KY689632 (Escherichia coli strain 19-M12 plasmid p19M12, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

224. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP045446 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

225. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_KU743384 (Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

226. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_KU254578 (Escherichia coli strain YD786 plasmid pYD786-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

227. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_KX129782 (Escherichia coli strain S38 plasmid pS38, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

228. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP015833 (Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

229. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to LT221036 (Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

230. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

231. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP045449 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

232. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP015096 (Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcgtcctcggtctcggcctcggtc------	Protospacer
      ***** .***********.******

233. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to MN732922 (Escherichia coli strain 49K plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

234. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP020493 (Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

235. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to CP031284 (Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

236. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to CP042895 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

237. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP022735 (Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

238. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to CP042898 (Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

239. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP022165 (Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

240. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP012931 (Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

241. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP023143 (Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

242. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP026936 (Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

243. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP025402 (Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

244. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP026933 (Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

245. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

246. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_MH208235 (Escherichia coli strain APECA2 plasmid pJMA2, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

247. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_MK169211 (Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

248. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

249. spacer 2.22|3077742|32|NC_003197|PILER-CR matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cgcgcagcccggtctcggtctcggttgtggcg	Protospacer
. .  . *.**************** ***.**

250. spacer 2.31|3077178|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

251. spacer 2.38|3077605|32|NC_003197|CRT,CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

252. spacer 2.38|3077605|32|NC_003197|CRT,CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

253. spacer 2.38|3077605|32|NC_003197|CRT,CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

254. spacer 2.38|3077605|32|NC_003197|CRT,CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

255. spacer 2.38|3077605|32|NC_003197|CRT,CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

256. spacer 2.39|3077666|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagatt	Protospacer
.   .**.********** **********

257. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_KY689633 (Escherichia coli strain 100R plasmid p100R, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

258. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_KY689632 (Escherichia coli strain 19-M12 plasmid p19M12, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

259. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP045446 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

260. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_KU743384 (Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

261. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_KU254578 (Escherichia coli strain YD786 plasmid pYD786-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

262. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_KX129782 (Escherichia coli strain S38 plasmid pS38, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

263. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP015833 (Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

264. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to LT221036 (Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

265. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

266. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP045449 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

267. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP015096 (Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcgtcctcggtctcggcctcggtc------	Protospacer
      ***** .***********.******

268. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to MN732922 (Escherichia coli strain 49K plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

269. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP020493 (Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

270. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to CP031284 (Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

271. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to CP042895 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

272. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP022735 (Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

273. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to CP042898 (Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

274. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP022165 (Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

275. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP012931 (Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

276. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP023143 (Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

277. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP026936 (Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

278. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP025402 (Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

279. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP026933 (Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

280. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

281. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_MH208235 (Escherichia coli strain APECA2 plasmid pJMA2, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

282. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_MK169211 (Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

283. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

284. spacer 2.40|3077727|32|NC_003197|CRT,CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cgcgcagcccggtctcggtctcggttgtggcg	Protospacer
. .  . *.**************** ***.**

285. spacer 3.1|3094315|32|NC_003197|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

286. spacer 3.4|3094498|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

287. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

288. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

289. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

290. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

291. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

292. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

293. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

294. spacer 3.18|3095353|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

295. spacer 3.22|3095597|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

296. spacer 3.27|3095902|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

297. spacer 3.27|3095902|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

298. spacer 3.27|3095902|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

299. spacer 3.27|3095902|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

300. spacer 3.27|3095902|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

301. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

302. spacer 3.20|3095475|32|NC_003197|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

961045 : 1064824

Escherichia_phage(32.08%)

integrase,tail,transposase,protease,tRNA

attL 956786:956802|attR 1073064:1073080

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
956786:956802	attL	NA	NA	NA	NA
NP_459867.1\|961045_961774_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	5.1e-28	35.8
NP_459868.1\|962003_962519_-	putative lipoprotein	NA	NA	NA	NA
NP_459869.1\|962614_963940_-\|integrase	putative Fels-1 prophage integrase	Q20GI2	Phage_258-320	3.2e-169	65.9
NP_459870.1\|963967_964210_-	putative Fels-1 prophage excisionase	G9L654	Escherichia_phage	1.8e-22	62.8
NP_459871.1\|964575_964884_-	Fels-1 prophage protein	A0A1B5FPC7	Escherichia_phage	2.1e-15	80.8
NP_459872.1\|965343_965736_-	Fels-1 prophage protein	F1C5A3	Cronobacter_phage	5.9e-23	76.1
NP_459873.1\|966311_966728_-	Fels-1 prophage protein	A0A1B5FPB3	Escherichia_phage	1.4e-27	55.7
NP_459874.1\|967913_968609_-	predicted Fels-1 prophage transcriptional regulator	F1C5C2	Cronobacter_phage	7.4e-85	67.5
NP_459875.1\|968721_968976_+	Fels-1 prophage protein	A0A2H4JEY0	uncultured_Caudovirales_phage	7.5e-11	52.9
NP_459876.1\|969475_969844_+	Fels-1 prophage protein	A0A1B5FPB1	Escherichia_phage	4.5e-57	88.5
NP_459877.1\|970001_971585_+	putative Fels-1 prophage DNA or RNA helicases of superfamily II	A0A1B5FPA4	Escherichia_phage	9.1e-264	83.0
NP_459878.1\|971581_972550_+	Fels-1 putative prophage DNA primase	A0A1B5FPA8	Escherichia_phage	1.9e-179	95.3
NP_459879.1\|972549_973410_+	Fels-1 prophage protein	A0A1B5FPA6	Escherichia_phage	1.0e-136	84.6
NP_459880.1\|973406_974222_+	putative Fels-1 prophage chaparone	A0A1B5FPA5	Escherichia_phage	3.7e-112	72.3
NP_459881.1\|974376_974769_-	Fels-1 prophage protein	NA	NA	NA	NA
NP_459882.1\|975826_976225_+	Fels-1 prophage hypothetical protein	NA	NA	NA	NA
NP_459883.1\|976814_977159_+	Fels-1 prophage protein	Q8HA87	Salmonella_phage	5.3e-44	100.0
NP_459884.1\|977161_977776_+	putative Fels-1 prophage chitinase	Q8HA86	Salmonella_phage	1.4e-108	93.1
NP_459885.1\|977772_978258_+	Fels-1 prophage protein	Q8HA85	Salmonella_phage	5.7e-76	93.8
NP_459886.1\|979092_979584_+	Fels-1 prophage protein	Q9EYD0	Enterobacteria_phage	2.6e-44	57.5
NP_459887.1\|979570_981679_+	Fels-1 prophage protein	Q9EYD1	Enterobacteria_phage	1.5e-293	70.6
NP_459888.1\|981878_983414_+	Fels-1 prophage protein	K7PHM5	Enterobacterial_phage	3.7e-177	63.1
NP_459889.3\|983265_985452_+\|protease	Fels-1 prophage protease subunits of ATP-dependent proteases	A5LH30	Enterobacteria_phage	1.3e-276	72.1
NP_459890.1\|985465_986137_-	Fels-1 prophage protein	NA	NA	NA	NA
NP_459891.1\|986135_986720_+\|tail	putative Fels-1 phage tail component	A5LH33	Enterobacteria_phage	4.5e-75	77.1
NP_459892.1\|986716_987118_+	Fels-1 prophage protein	A0A291AWY2	Escherichia_phage	4.9e-49	66.9
NP_459893.1\|987128_987872_+\|tail	putative Fels-1 prophage major tail protein	A0A291AWU6	Escherichia_phage	6.2e-98	75.6
NP_459894.1\|988338_988656_+\|tail	putative Fels-1 prophage minor tail protein	A5LH37	Enterobacteria_phage	1.6e-31	65.1
NP_459895.1\|988627_991789_+\|tail	putative Fels-1 prophage minor tail protein	A0A291AWX1	Escherichia_phage	4.3e-257	55.7
NP_459896.1\|991788_992118_+\|tail	putative Fels-1 prophage minor tail protein	A5LH39	Enterobacteria_phage	2.2e-39	68.5
NP_459897.1\|992244_992763_+	Fels-1 prophage attachment and invasion protein	H6WZM8	Escherichia_phage	3.1e-11	30.2
NP_459898.1\|992894_993590_+\|tail	putative Fels-1 prophage minor tail protein	Q687F1	Enterobacteria_phage	3.2e-96	71.4
NP_459899.1\|993601_994336_+\|tail	putative Fels-1 prophage tail assembly protein	K7PLW1	Enterobacteria_phage	2.7e-114	77.4
NP_459900.1\|994233_994911_+\|tail	putative Fels-1 prophage tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.0e-67	67.6
NP_459901.1\|994964_995489_-	putative Fels-1 prophage Cu/Zn superoxide dismutase	Q9MC02	Salmonella_phage	1.3e-97	100.0
NP_459902.3\|995582_999029_+	putative Fels-1 prophage host specificity protein	A0A0K2FI38	Escherichia_phage	0.0e+00	69.8
NP_459903.1\|999072_1001445_+\|tail	putative Fels-1 prophage minor tail protein	A0A0K2FIZ6	Escherichia_phage	5.8e-89	64.2
NP_459904.1\|1001444_1002020_+\|tail	putative Fels-1 prophage tail assembly protein	A0A0M4RTP2	Salmonella_phage	5.2e-92	86.8
NP_459905.1\|1002090_1003329_-	sialidase	NA	NA	NA	NA
NP_447365.1\|1003902_1004274_-	putative inner membrane protein	NA	NA	NA	NA
NP_459907.1\|1005369_1005693_+	hypothetical protein	NA	NA	NA	NA
NP_459908.1\|1005689_1006520_+	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	1.8e-08	30.7
NP_459909.1\|1006516_1007530_-	hypothetical protein	NA	NA	NA	NA
NP_459910.1\|1007625_1009059_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
NP_459911.1\|1009069_1010071_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
NP_459912.1\|1010109_1011828_-	pyruvate oxidase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.7e-29	24.4
NP_459913.1\|1011985_1012957_-	NADH oxidoreductase for hcp gene product	NA	NA	NA	NA
NP_459914.1\|1012965_1014618_-	hydroxylamine reductase	NA	NA	NA	NA
NP_459915.1\|1014761_1015661_-	hypothetical protein	NA	NA	NA	NA
NP_459916.2\|1015862_1017521_+	ATP-dependent endonuclease	NA	NA	NA	NA
NP_459917.1\|1017517_1018486_-	homolog of virK	NA	NA	NA	NA
NP_459918.1\|1018613_1019732_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
NP_459919.1\|1019728_1021675_+	putative ABC superfamily (atp&memb) transport protein	G9BWD6	Planktothrix_phage	2.0e-39	43.1
NP_459920.1\|1021804_1022026_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
NP_459921.1\|1022349_1022670_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
NP_459922.1\|1022700_1024977_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
NP_459923.1\|1025168_1025627_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
NP_459926.1\|1027681_1028359_-	hydrolase	NA	NA	NA	NA
NP_459927.1\|1028378_1029239_-	quercetin 2,3-dioxygenase	NA	NA	NA	NA
NP_459928.1\|1029347_1030259_+	LysR family transcriptional regulator	NA	NA	NA	NA
NP_459929.1\|1030349_1030568_-	translation initiation factor IF-1	NA	NA	NA	NA
NP_459930.1\|1030495_1030879_-	hypothetical protein	NA	NA	NA	NA
NP_459931.1\|1030879_1031584_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
NP_459932.1\|1031628_1033350_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	8.4e-13	23.5
NP_459933.1\|1033350_1035117_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	6.0e-22	25.1
NP_459934.1\|1035230_1036199_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	45.5
NP_459935.1\|1036744_1037239_+	leucine-responsive transcriptional regulator	NA	NA	NA	NA
NP_459936.1\|1037373_1041429_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5
NP_459937.1\|1041568_1042183_+	periplasmic protein	NA	NA	NA	NA
NP_459938.1\|1042192_1043536_+	recombination factor protein RarA	G3MBE0	Bacillus_virus	1.6e-80	40.9
NP_459939.1\|1043794_1045087_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
NP_459940.1\|1045323_1047768_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.4e-223	50.5
NP_459941.1\|1047778_1048396_+	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	4.3e-76	59.6
NP_459942.1\|1048397_1049261_+	dimethyl sulfoxide reductase	NA	NA	NA	NA
NP_459943.1\|1049610_1050759_+	MFS transporter	NA	NA	NA	NA
NP_459944.1\|1050976_1052398_+	transporter	NA	NA	NA	NA
NP_459945.3\|1052690_1053515_-	pyruvate formate lyase activating enzyme 1	A0A2P0VNQ0	Tetraselmis_virus	2.8e-22	26.5
NP_459946.1\|1053606_1053933_-	putative cytoplasmic protein	NA	NA	NA	NA
NP_459947.1\|1054063_1055023_+	pathogenicity island 1 protein SopD2	NA	NA	NA	NA
NP_459948.1\|1055098_1057381_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.1e-161	42.0
NP_459949.1\|1057440_1058298_-	formate transporter FocA	NA	NA	NA	NA
NP_459950.1\|1058702_1060463_-	ribosomal protein S12 methylthiotransferase accessory factor YcaO	NA	NA	NA	NA
NP_459951.1\|1060599_1061292_+	hypothetical protein	NA	NA	NA	NA
NP_459952.1\|1061477_1062566_+	phosphoserine transaminase	M1Q1P2	Streptococcus_phage	1.2e-78	46.5
NP_459953.1\|1062636_1063920_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
NP_459954.1\|1064062_1064824_+\|protease	metalloprotease	NA	NA	NA	NA
1073064:1073080	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1077408 : 1160243

Salmonella_phage(42.86%)

integrase,tail,protease,tRNA

attL 1080317:1080336|attR 1152104:1152123

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_459966.1\|1077408_1078212_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
NP_459967.1\|1078204_1079527_+	condensin subunit MukF	NA	NA	NA	NA
NP_459968.1\|1079507_1080212_+	chromosome partitioning protein MukE	NA	NA	NA	NA
NP_459969.1\|1080211_1084678_+	cell division protein MukB	NA	NA	NA	NA
1080317:1080336	attL	NA	NA	NA	NA
NP_459970.1\|1085022_1086864_+	L,D-transpeptidase	NA	NA	NA	NA
NP_459971.1\|1087123_1087672_+	hypothetical protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
NP_459972.1\|1087699_1088347_+	hypothetical protein	NA	NA	NA	NA
NP_459973.1\|1088408_1089599_-	aromatic amino acid aminotransferase	NA	NA	NA	NA
NP_459974.1\|1089783_1090875_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
NP_459975.1\|1091481_1092882_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
NP_459976.1\|1093082_1093544_-	putative leucine response regulator	NA	NA	NA	NA
NP_459977.1\|1093860_1095075_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
NP_459978.1\|1095319_1096756_+	amino acid:proton symporter	NA	NA	NA	NA
NP_459979.1\|1096833_1098036_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
NP_459980.1\|1098230_1099523_-\|integrase	Gifsy-2 prophage integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
NP_459981.1\|1099567_1099816_-	Gifsy-2 prophage excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
NP_459982.1\|1099856_1100096_-	Gifsy-2 prophage protein	S4TR31	Salmonella_phage	2.0e-37	100.0
NP_459983.3\|1100138_1101296_-	Gifsy-2 prophage protein	S4TTE8	Salmonella_phage	1.6e-217	100.0
NP_459984.1\|1101258_1104144_-	Gifsy-2 prophage exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.4
NP_459985.1\|1104270_1104570_-	Gifsy-2 prophage protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
NP_459986.1\|1104742_1105003_-	Gifsy-2 prophage protein	NA	NA	NA	NA
NP_459987.1\|1105052_1105463_-	Gifsy-2 prophage putative regulatory protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
NP_459988.1\|1105787_1106162_+	Gifsy-2 prophage putative regulatory protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
NP_459989.1\|1106246_1107230_+	Gifsy-2 prophage putative regulatory protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
NP_459990.1\|1107232_1107982_+	Gifsy-2 prophage ATPase involved in DNA replication initiation	S4TNF5	Salmonella_phage	3.6e-138	99.6
NP_459991.1\|1107992_1108340_+	Gifsy-2 prophage protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
NP_459992.1\|1108336_1108648_+	Gifsy-2 prophage protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
NP_459993.1\|1108725_1109016_+	Gifsy-2 prophage protein	NA	NA	NA	NA
NP_459994.1\|1109307_1109541_+	Gifsy-2 prophage protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
NP_459995.1\|1109956_1110559_+	Gifsy-2 prophage protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
NP_459996.1\|1110767_1111379_+	Gifsy-2 prophage protein	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
NP_459997.1\|1111511_1112309_+	Gifsy-2 prophage putative molecular chaperone, DnaJ family	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
NP_459998.1\|1112375_1112693_+	Gifsy-2 prophage protein	NA	NA	NA	NA
NP_459999.1\|1112866_1112992_+	Gifsy-2 prophage protein	NA	NA	NA	NA
NP_460000.1\|1113127_1113577_-	Gifsy-2 prophage protein	NA	NA	NA	NA
NP_460001.1\|1113937_1114450_-	Gifsy-2 prophage protein	Q9MBM0	Phage_Gifsy-2	6.8e-96	100.0
NP_460002.1\|1114980_1115229_+	Gifsy-2 prophage protein	A0A0M3ULK9	Salmonella_phage	6.3e-39	100.0
NP_460003.1\|1115212_1115665_+	Gifsy-2 prophage lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
NP_460004.1\|1115682_1116162_+	Gifsy-2 prophage protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
NP_460005.1\|1116369_1116903_+	Gifsy-2 prophage protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
NP_460006.1\|1116859_1118998_+	Gifsy-2 prophage protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
NP_460007.1\|1119431_1120745_+	Gifsy-2 prophage protein	A0A291AWU2	Escherichia_phage	3.1e-148	64.5
NP_460008.1\|1120668_1122750_+\|protease	Gifsy-2 prophage Clp protease-like protein	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
NP_460009.1\|1122840_1123164_+	Gifsy-2 prophage putative RecA/RadA recombinase	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
NP_460010.1\|1123156_1123456_+	Gifsy-2 prophage ATP-binding sugar transporter-like protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
NP_460011.1\|1123436_1124003_+\|tail	Gifsy-2 prophage probable minor tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
NP_460012.1\|1123999_1124401_+\|tail	Gifsy-2 prophage probable minor tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
NP_460013.1\|1124412_1125162_+\|tail	Gifsy-2 prophage probable major tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
NP_460014.1\|1125207_1125606_+\|tail	Gifsy-2 prophage probable minor tail protein	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
NP_460015.1\|1125602_1125932_+\|tail	Gifsy-2 prophage probable minor tail protein	A5LH37	Enterobacteria_phage	5.0e-23	50.9
NP_460016.1\|1126011_1128999_+\|tail	Gifsy-2 prophage probable minor tail protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
NP_460017.1\|1128995_1129328_+\|tail	Gifsy-2 prophage probable minor tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
NP_460018.1\|1129426_1129924_+	Gifsy-2 prophage attachment and invasion protein homolog	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
NP_460019.1\|1130040_1130574_-	Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn)	Q9MC02	Salmonella_phage	1.8e-46	54.0
NP_460020.1\|1130663_1131359_+\|tail	Gifsy-2 prophage probable minor tail protein	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
NP_460021.1\|1131368_1132106_+\|tail	Gifsy-2 prophage probable tail assembly protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
NP_460022.1\|1132003_1132708_+\|tail	Gifsy-2 prophage probable tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
NP_460023.1\|1132779_1135227_+	Gifsy-2 prophage host specificity protein J, phage lambda	Q687E8	Enterobacteria_phage	0.0e+00	68.0
NP_460024.1\|1136463_1138902_+\|tail	Gifsy-2 prophage probable tail fiber protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
NP_460025.1\|1138901_1139483_+\|tail	Gifsy-2 prophage tail fiber assembly like-protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
NP_460026.1\|1139958_1140927_+	Gifsy-2 prophage putative type III secreted protein	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
NP_460027.1\|1141574_1142201_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
NP_460028.1\|1142269_1142569_-	Gifsy-2 prophage protein	NA	NA	NA	NA
NP_460029.1\|1142553_1143240_-	Gifsy-2 prophage protein	NA	NA	NA	NA
NP_460030.1\|1143510_1143702_-	Gifsy-2 prophage protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
NP_460031.1\|1144128_1146741_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
NP_460032.1\|1146948_1147959_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
NP_460033.1\|1148124_1148667_+	cell division protein ZapC	NA	NA	NA	NA
NP_460034.1\|1148663_1149773_-	hypothetical protein	NA	NA	NA	NA
NP_460035.1\|1149871_1151980_+	23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase	NA	NA	NA	NA
NP_460036.1\|1151992_1153900_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1152104:1152123	attR	NA	NA	NA	NA
NP_460037.1\|1153914_1155168_+	paraquat-inducible protein A	NA	NA	NA	NA
NP_460038.1\|1155172_1156813_+	paraquat-inducible protein B	NA	NA	NA	NA
NP_460039.1\|1156809_1157373_+	hypothetical protein	NA	NA	NA	NA
NP_460040.1\|1157628_1157796_+	ribosome modulation factor	NA	NA	NA	NA
NP_460041.1\|1157895_1158414_-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	NA	NA	NA	NA
NP_460042.1\|1158482_1160243_-\|protease	Lon protease	NA	NA	NA	NA

DBSCAN-SWA_3

1961659 : 1970281

Salmonella_phage(42.86%)

tail,integrase

attL 1958335:1958357|attR 1968050:1968072

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1958335:1958357	attL	NA	NA	NA	NA
NP_448280.1\|1961659_1961785_-	putative cytoplasmic protein	S4TTF2	Salmonella_phage	4.3e-12	89.5
NP_460822.1\|1963175_1963376_+	phage virulence factor	NA	NA	NA	NA
NP_460823.1\|1963472_1964354_-\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
NP_460824.1\|1965079_1965247_+	lytic enzyme	NA	NA	NA	NA
NP_460825.1\|1965503_1966037_-	hypothetical protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
NP_460826.1\|1966090_1966378_-	hypothetical protein	Q8HA86	Salmonella_phage	9.9e-28	93.7
NP_460827.1\|1966510_1967005_+	recE-like protein	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
NP_448287.1\|1967022_1967919_+\|integrase	putative phage integrase protein	A0A2H4IYC8	uncultured_Caudovirales_phage	6.6e-78	51.3
NP_460829.1\|1968115_1968235_-	putative cytoplasmic protein	NA	NA	NA	NA
1968050:1968072	attR	NA	NA	NA	NA
NP_460830.1\|1968292_1968646_-	hypothetical protein	NA	NA	NA	NA
NP_460831.1\|1968662_1969538_-	putative inner membrane protein	NA	NA	NA	NA
NP_460832.1\|1969538_1969913_-	hypothetical protein	NA	NA	NA	NA
NP_460833.1\|1970050_1970281_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_4

2074325 : 2081579

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_460943.1\|2074325_2075756_-	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
NP_460944.1\|2075829_2076525_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
NP_460945.1\|2076616_2076916_-	putative inner membrane protein	NA	NA	NA	NA
NP_460946.1\|2077565_2078762_+	putative porin	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
NP_460947.1\|2079221_2079434_-	putative cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
NP_460948.1\|2079888_2081157_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
NP_460949.1\|2081159_2081579_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_5

2170922 : 2181428

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_461035.1\|2170922_2172236_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
NP_461036.1\|2172262_2173342_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
NP_461037.1\|2173346_2174120_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
NP_461038.1\|2174116_2175109_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
NP_461039.1\|2175114_2175666_-	dTDP-4,deoxyrhamnose 3,5 epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
NP_461040.1\|2175666_2176545_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.3e-109	65.5
NP_461041.1\|2176592_2177492_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
NP_461042.1\|2177491_2178577_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
NP_461043.1\|2178953_2179847_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
NP_461044.1\|2180024_2181428_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1

DBSCAN-SWA_6

2249736 : 2258907

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_461099.1\|2249736_2251770_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
NP_461100.1\|2252010_2252469_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
NP_461101.1\|2252640_2253171_+	hypothetical protein	NA	NA	NA	NA
NP_461102.1\|2253227_2253695_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
NP_461103.1\|2253741_2254461_-	two-component system response regulator YehT	NA	NA	NA	NA
NP_461104.1\|2254457_2256143_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
NP_461105.1\|2256365_2257097_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
NP_461106.1\|2257156_2257264_+	hypothetical protein	NA	NA	NA	NA
NP_461107.1\|2257244_2257976_-	ABC transporter permease	NA	NA	NA	NA
NP_461108.1\|2257959_2258907_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_7

2278314 : 2344710

Salmonella_phage(27.27%)

tail,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_461127.1\|2278314_2279010_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
NP_461128.1\|2279163_2280048_+	cytidine deaminase	NA	NA	NA	NA
NP_461129.1\|2280224_2280944_+	vancomycin high temperature exclusion protein	NA	NA	NA	NA
NP_461130.1\|2280940_2281186_+	putative inner membrane protein	NA	NA	NA	NA
NP_461131.1\|2281390_2282632_+	dihydropyrimidine dehydrogenase subunit A	NA	NA	NA	NA
NP_461132.1\|2282625_2283861_+	dihydropyrimidine dehydrogenase subunit B	NA	NA	NA	NA
NP_461133.1\|2283935_2284946_-	galactoside ABC transporter permease MglC	NA	NA	NA	NA
NP_461134.1\|2284961_2286482_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.0e-09	31.9
NP_461135.1\|2286615_2287614_-	methyl-galactoside ABC transporter substrate-binding protein	NA	NA	NA	NA
NP_461136.1\|2288112_2289135_-	DNA-binding transcriptional regulator GalS	NA	NA	NA	NA
NP_461137.1\|2289284_2290427_-	hypothetical protein	NA	NA	NA	NA
NP_461138.1\|2290441_2291110_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	4.1e-56	56.3
NP_461139.2\|2291439_2292297_+	S-formylglutathione hydrolase	NA	NA	NA	NA
NP_461140.1\|2292285_2292675_-	putative transcriptional regulator	NA	NA	NA	NA
NP_461141.1\|2292679_2294047_-	L-serine ammonia-lyase	NA	NA	NA	NA
NP_461142.1\|2294263_2295151_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
NP_461143.1\|2295183_2296506_+	MFS transporter	NA	NA	NA	NA
NP_461144.1\|2296549_2298541_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	6.7e-14	37.9
NP_461145.1\|2298886_2300356_-	lysine transporter	NA	NA	NA	NA
NP_461146.1\|2300545_2301409_-	putative LysR family transcriptional regulator	NA	NA	NA	NA
NP_461147.1\|2301529_2302579_+	hypothetical protein	NA	NA	NA	NA
NP_461148.1\|2302657_2303515_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	2.2e-22	28.5
NP_461149.1\|2303579_2305268_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
NP_461150.1\|2305284_2306223_-	1-phosphofructokinase	NA	NA	NA	NA
NP_461151.1\|2306222_2307353_-	bifunctional PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
NP_461152.1\|2307721_2308903_+	sugar efflux transporter SetB	NA	NA	NA	NA
NP_461153.1\|2308967_2309633_-	hypothetical protein	NA	NA	NA	NA
NP_461154.1\|2309634_2309757_-	hypothetical protein	NA	NA	NA	NA
NP_461155.3\|2310491_2311295_+	putative elongation factor	NA	NA	NA	NA
NP_461156.1\|2311507_2312494_+	hypothetical protein	NA	NA	NA	NA
NP_461157.1\|2312523_2313243_+	hypothetical protein	NA	NA	NA	NA
NP_461158.1\|2313656_2314229_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	8.1e-13	38.9
NP_461159.1\|2314554_2316111_+	phage resistance protein	NA	NA	NA	NA
NP_461160.1\|2316217_2318023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
NP_461161.1\|2318032_2319127_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
NP_461162.1\|2319126_2320152_+	microcin ABC transporter permease	NA	NA	NA	NA
NP_461163.1\|2320153_2321743_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	8.5e-20	32.5
NP_461164.1\|2321746_2322091_-	hypothetical protein	NA	NA	NA	NA
NP_461165.1\|2322481_2323672_-	Bcr/CflA family drug resistance efflux transporter	S4TR35	Salmonella_phage	2.4e-19	22.2
NP_461166.1\|2323699_2324395_-	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA
NP_461167.1\|2324546_2326307_+	putative ATP-dependent helicase	M4Q3N1	Vibrio_phage	1.9e-100	41.6
NP_461168.1\|2326431_2326716_+	50S ribosomal protein L25	NA	NA	NA	NA
NP_461169.1\|2326824_2327445_-	hypothetical protein	NA	NA	NA	NA
NP_461170.1\|2327472_2328480_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	4.5e-83	48.3
NP_461171.1\|2328659_2328887_+	hypothetical protein	NA	NA	NA	NA
NP_461172.1\|2328918_2330679_+	hypothetical protein	NA	NA	NA	NA
NP_461173.3\|2330959_2331463_-	putative peptidase	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
NP_461174.1\|2331490_2331781_+	ssrB-regulated factor	S4TND2	Salmonella_phage	4.7e-25	83.3
NP_461175.1\|2332128_2333958_+	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
NP_461176.1\|2334011_2334455_-\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
NP_461177.1\|2334832_2335360_-\|tail	phage tail protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
NP_461178.1\|2335362_2336604_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
NP_461179.1\|2336664_2337183_-	peptidase	Q8SBH9	Shigella_phage	5.2e-75	88.0
NP_461180.1\|2337196_2337526_-\|holin	lambda family phage holin	Q8SBE1	Shigella_phage	3.9e-36	94.6
NP_461181.1\|2337822_2339154_+	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
NP_461182.1\|2339182_2339551_-	hypothetical protein	A5LH77	Enterobacteria_phage	7.4e-52	81.7
NP_461183.1\|2339565_2340555_-	hypothetical protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
NP_461184.1\|2340883_2343250_-	E3 ubiquitin--protein ligase	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
NP_461185.1\|2343418_2343622_-\|tail	putative tail fiber protein of phage	NA	NA	NA	NA
NP_461186.1\|2343918_2344710_-\|tail	phage tail protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6

DBSCAN-SWA_8

2733905 : 2776819

Salmonella_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_461523.1\|2733905_2734730_-	Gifsy-1 prophage protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
NP_461524.1\|2734726_2737099_-	Gifsy-1 prophage protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
NP_461525.2\|2737433_2740796_-	Gifsy-1 prophage protein	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
NP_461526.1\|2740857_2741505_-	Gifsy-1 prophage protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
NP_461527.1\|2741402_2742002_-	Gifsy-1 prophage protein	K7PLW1	Enterobacteria_phage	2.2e-106	85.7
NP_461528.1\|2742146_2742845_-	Gifsy-1 prophage protein	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
NP_461529.1\|2742854_2743184_-	Gifsy-1 prophage protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
NP_461530.1\|2743186_2746282_-	Gifsy-1 prophage protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
NP_461531.1\|2746253_2746592_-	Gifsy-1 prophage protein	A5LH37	Enterobacteria_phage	1.3e-31	62.4
NP_461532.1\|2746588_2746984_-	Gifsy-1 prophage protein	A5LH36	Enterobacteria_phage	2.3e-30	56.5
NP_461533.1\|2747034_2747781_-	Gifsy-1 prophage protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
NP_461534.1\|2747788_2748190_-	Gifsy-1 prophage protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
NP_461535.1\|2748178_2749429_+	Gifsy-1 prophage protein	Q9G0F2	Phage_Gifsy-1	7.8e-218	100.0
NP_461536.1\|2749477_2750056_-	hypothetical protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
NP_461537.1\|2750083_2750467_-	Gifsy-1 prophage protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
NP_461538.1\|2750477_2750837_-	Gifsy-1 prophage protein	NA	NA	NA	NA
NP_461539.1\|2750894_2751923_-	Gifsy-1 prophage protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
NP_461540.1\|2751977_2752325_-	Gifsy-1 prophage protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
NP_461541.1\|2752337_2753834_-	Gifsy-1 prophage protein	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
NP_461542.1\|2753823_2755404_-	Gifsy-1 prophage protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
NP_461543.1\|2755400_2755604_-	Gifsy-1 prophage protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
NP_461544.1\|2755587_2757519_-	Gifsy-1 prophage protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
NP_461545.2\|2757490_2758036_-	Gifsy-1 prophage protein	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
NP_461546.1\|2758322_2758724_+	Gifsy-1 prophage protein	NA	NA	NA	NA
NP_461547.3\|2758959_2759412_-	Gifsy-1 prophage protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
NP_461548.1\|2759429_2759882_-	Gifsy-1 prophage protein	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
NP_461549.1\|2759865_2760195_-	Gifsy-1 prophage protein	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
NP_461550.1\|2760470_2761157_+	Gifsy-1 prophage protein	Q9MBM2	Phage_Gifsy-1	7.9e-132	99.6
NP_461551.1\|2762066_2762630_-	hypothetical protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
NP_461552.1\|2762902_2763580_-	Gifsy-1 prophage protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
NP_461553.1\|2763576_2763717_-	Gifsy-1 prophage protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
NP_461554.1\|2763713_2764325_-	Gifsy-1 prophage protein	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
NP_461555.1\|2764533_2765136_-	Gifsy-1 prophage protein	S4TTI0	Salmonella_phage	1.1e-108	98.5
NP_461556.1\|2765551_2765785_-	Gifsy-1 prophage protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
NP_461557.1\|2766076_2766370_-	Gifsy-1 prophage protein	NA	NA	NA	NA
NP_461558.1\|2766444_2766756_-	Gifsy-1 prophage protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
NP_461559.1\|2766752_2767100_-	Gifsy-1 prophage protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
NP_461560.1\|2767110_2767860_-	Gifsy-1 prophage protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
NP_461561.1\|2767862_2768846_-	Gifsy-1 prophage protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
NP_461562.1\|2768930_2769305_-	Gifsy-1 prophage protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
NP_461563.1\|2769629_2770040_+	Gifsy-1 prophage protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
NP_461564.1\|2770089_2770350_+	Gifsy-1 prophage protein	NA	NA	NA	NA
NP_461565.1\|2770342_2770501_+	Gifsy-1 prophage protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
NP_461566.1\|2770522_2770873_+	Gifsy-1 prophage protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
NP_461567.1\|2770999_2773885_+	Gifsy-1 prophage protein	S4TNL0	Salmonella_phage	0.0e+00	97.4
NP_461568.3\|2773847_2775005_+	Gifsy-1 prophage protein	S4TTE8	Salmonella_phage	7.9e-217	99.7
NP_461569.1\|2775047_2775287_+	hypothetical protein	S4TR31	Salmonella_phage	2.0e-37	100.0
NP_461570.1\|2775327_2775612_+	Gifsy-1 prophage protein	H6WRW8	Salmonella_phage	3.1e-42	86.2
NP_461571.1\|2775589_2776819_-	Gifsy-1 prophage protein	H6WRW7	Salmonella_phage	2.9e-233	94.4

DBSCAN-SWA_9

2844430 : 2879237

Salmonella_phage(95.35%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_461622.1\|2844430_2844649_-	Fels-2 prophage protein	Q53ZE7	Salmonella_virus	2.1e-38	100.0
NP_461623.1\|2844717_2845818_-	Fels-2 prophage protein	A0A1S6KZZ5	Salmonella_phage	3.4e-193	98.1
NP_461624.1\|2845814_2846300_-	Fels-2 prophage protein	E5G6Q2	Salmonella_phage	2.4e-66	98.5
NP_461625.1\|2846296_2849104_-	Fels-2 prophage protein	A0A1S6L010	Salmonella_phage	0.0e+00	99.7
NP_461626.1\|2849096_2849216_-	Fels-2 prophage protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
NP_461627.1\|2849230_2849533_-	Fels-2 prophage protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
NP_461628.1\|2849587_2850103_-	Fels-2 prophage protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
NP_461629.1\|2850112_2851285_-	Fels-2 prophage protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.7
NP_461630.1\|2851387_2851945_-	Fels-2 prophage protein	A0A1S6L009	Salmonella_phage	8.0e-98	97.8
NP_461631.1\|2851914_2852994_+	Fels-2 prophage protein	A0A1B0V7G4	Salmonella_phage	5.4e-183	92.1
NP_461632.1\|2853000_2853408_+	Fels-2 prophage protein	A0A1B0V844	Salmonella_phage	2.2e-60	84.4
NP_461633.1\|2853411_2854029_-	Fels-2 prophage protein	A0A1B0VCD0	Salmonella_phage	4.1e-95	84.6
NP_461634.1\|2853998_2855573_-	Fels-2 prophage protein	A0A1S6KZZ8	Salmonella_phage	2.1e-156	60.7
NP_461635.1\|2855569_2856175_-	Fels-2 prophage protein	A0A1S6L000	Salmonella_phage	4.1e-116	98.0
NP_461636.1\|2856167_2857076_-	Fels-2 prophage protein	E5G6N8	Salmonella_phage	7.7e-159	99.0
NP_461637.1\|2857062_2857422_-	Fels-2 prophage protein	E5G6N7	Salmonella_phage	8.0e-59	98.3
NP_461638.1\|2857418_2857997_-	Fels-2 prophage protein	E5G6N6	Salmonella_phage	3.3e-107	98.4
NP_461639.1\|2858065_2858512_-	Fels-2 prophage protein	A0A1S6L001	Salmonella_phage	1.9e-65	89.0
NP_461640.1\|2858504_2858936_-	Fels-2 prophage protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
NP_461641.1\|2858898_2859183_-	Fels-2 prophage protein	A0A1S6KZX6	Salmonella_phage	8.8e-45	97.8
NP_461642.1\|2859031_2859460_-	Fels-2 prophage protein	A0A1S6KZX8	Salmonella_phage	2.6e-64	95.0
NP_461643.3\|2859836_2860346_-	Fels-2 prophage protein	A0A1S6KZY9	Salmonella_phage	3.5e-92	97.6
NP_461644.1\|2860326_2860542_-	Fels-2 prophage protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
NP_461645.1\|2860545_2860749_-	Fels-2 prophage protein	E5G6M9	Salmonella_phage	1.1e-33	98.5
NP_461646.1\|2860748_2861213_-	Fels-2 prophage protein	A0A1S6KZW8	Salmonella_phage	1.9e-84	98.1
NP_461647.1\|2861306_2861960_-	Fels-2 prophage protein	A0A1S6KZX1	Salmonella_phage	4.6e-113	98.6
NP_461648.1\|2861963_2863046_-	Fels-2 prophage protein	A0A1S6KZZ3	Salmonella_phage	1.6e-190	97.7
NP_461649.1\|2863062_2863896_-	Fels-2 prophage protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
NP_461650.1\|2864038_2865805_+	Fels-2 prophage protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.3
NP_461651.1\|2865804_2866845_+	Fels-2 prophage protein	A0A1S6KZW5	Salmonella_phage	2.4e-188	93.0
NP_461652.3\|2866930_2868682_-	Fels-2 prophage protein	NA	NA	NA	NA
NP_461653.1\|2868895_2869627_-	Fels-2 prophage protein	NA	NA	NA	NA
NP_461654.1\|2869686_2869992_-	Fels-2 prophage protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
NP_461655.1\|2869930_2870119_-	Fels-2 prophage protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
NP_461656.1\|2870271_2872701_-	Fels-2 prophage protein	A0A1S6L028	Salmonella_phage	0.0e+00	91.8
NP_461657.1\|2872691_2873549_-	Fels-2 prophage protein	A0A1S6L011	Salmonella_phage	2.7e-129	80.4
NP_461658.1\|2873545_2873773_-	Fels-2 prophage protein	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
NP_461659.1\|2873772_2874006_-	Fels-2 prophage protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
NP_461660.1\|2874073_2874415_-	Fels-2 prophage protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
NP_461661.1\|2874634_2875093_+	Fels-2 prophage protein	NA	NA	NA	NA
NP_461662.1\|2875040_2875274_-	Fels-2 prophage protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
NP_461663.1\|2875281_2875791_-	Fels-2 prophage protein	A0A1S6L008	Salmonella_phage	5.1e-83	92.9
NP_461664.1\|2875826_2876066_-	Fels-2 prophage protein	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
NP_461665.1\|2876182_2876815_+	Fels-2 prophage protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
NP_461666.1\|2876818_2877844_+	Fels-2 prophage protein	A0A1S6L016	Salmonella_phage	9.9e-203	100.0
NP_461667.1\|2878172_2879237_+	Fels-2 prophage protein	A0A1B5FPC6	Escherichia_phage	1.6e-118	62.5

DBSCAN-SWA_10

4417930 : 4438350

Burkholderia_phage(45.0%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_463061.1\|4417930_4418659_-	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
NP_463062.1\|4418855_4419146_-	putative inner membrane protein	NA	NA	NA	NA
NP_463063.1\|4419394_4419850_-	hypothetical protein	NA	NA	NA	NA
NP_463064.1\|4419846_4420452_-	hypothetical protein	NA	NA	NA	NA
NP_463065.1\|4420456_4422202_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
NP_463066.1\|4422204_4422837_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
NP_463067.1\|4422829_4423945_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
NP_463068.1\|4423935_4424295_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
NP_463069.1\|4424458_4426006_-	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
NP_463070.1\|4426005_4426935_-	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
NP_463071.1\|4426931_4427294_-	translocase	I1TED9	Salmonella_phage	1.2e-43	70.8
NP_463072.1\|4427621_4428344_-\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
NP_463073.1\|4428353_4429397_-	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
NP_463074.1\|4429384_4429594_-	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
NP_463075.1\|4429593_4430547_-	putative methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
NP_463076.1\|4430546_4432901_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
NP_463077.1\|4433454_4433979_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
NP_463078.1\|4433978_4435406_-\|tail	phage tail protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
NP_463079.1\|4435395_4435593_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
NP_463080.1\|4435589_4436045_-	hypothetical protein	NA	NA	NA	NA
NP_463081.1\|4436204_4436519_-	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
NP_463082.1\|4436531_4437137_-	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	4.2e-60	59.9
NP_463083.1\|4437139_4437427_-	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
NP_463084.3\|4438146_4438350_+	putative cytoplasmic protein	Q6QIE8	Burkholderia_phage	2.9e-13	58.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_003277

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40864 : 50160

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_490539.1\|40864_41281_+	putative DNA polymerase III epsilon subunit (3'-5' exonuclease)	O64348	Escherichia_phage	8.2e-07	42.9
NP_490540.1\|40974_41301_-	putative cytoplasmic protein	NA	NA	NA	NA
NP_490541.1\|42454_43396_-	putative cytoplasmic protein	Q2A0A7	Sodalis_phage	2.0e-72	54.3
NP_490542.1\|43810_45016_+	plasmid partition protein A	A0A077SL49	Escherichia_phage	1.5e-162	69.3
NP_490543.1\|45012_45990_+	plasmid partition protein B	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
NP_490544.1\|46071_47346_-	mutagenesis by UV and mutagens; related to umuDC operon	F1C5A5	Cronobacter_phage	3.0e-156	64.5
NP_490545.1\|47345_47768_-	mutagenesis by UV and mutagens; related to umuDC operon	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
NP_490546.1\|48278_48749_+	putative cytoplasmic protein	NA	NA	NA	NA
NP_490547.1\|48741_49098_+	putative cytoplasmic protein	NA	NA	NA	NA
NP_490548.1\|49479_50160_+	putative adenine-specific DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003197

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_003277

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection