CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_003047	Sinorhizobium meliloti 1021, complete genome	3 crisprs	WYL,cas3,csa3	0	4
NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	3 crisprs	RT,csa3	3	1
NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	0 crisprs	DEDDh,csa3,RT	0	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_003047_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003047_1

174959-175105

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_003047_1

>merge|NC_003047|1|174959-175105|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NC_003047|1|1|174959-175105|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003047.1\|WP_010968388.1\|172212_173604_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NC_003047.1\|WP_010968390.1\|175135_176095_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NC_003047.1\|WP_003531958.1\|178875_179958_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NC_003047.1\|WP_010968392.1\|182289_183357_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NC_003047.1\|WP_003531959.1\|177742_178876_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NC_003047.1\|WP_010968391.1\|176105_177734_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NC_003047.1\|WP_013844977.1\|166093_167563_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297
NC_003047.1\|WP_003531955.1\|183477_183858_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NC_003047.1\|WP_003537933.1\|169851_171015_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_003047.1\|WP_010968394.1\|185047_186853_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_003047.1\|WP_010968393.1\|183919_184939_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_003047.1\|WP_010968386.1\|168639_169623_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_003047.1\|WP_010968385.1\|167621_168632_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_003047.1\|WP_003531957.1\|180138_181998_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NC_003047.1\|WP_003537743.1\|173691_174036_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_003047.1\|WP_010968389.1\|174044_174899_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NC_003047.1\|WP_010968395.1\|186870_187689_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NC_003047.1\|WP_010968383.1\|164745_166032_+\|CpaE-family-protein	unknown	unknown	gnl\|CDD\|227298
NC_003047.1\|WP_010968382.1\|164042_164723_+\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NC_003047.1\|WP_010968387.1\|171272_172082_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343

Protein	Function_ID	Function_description	E-value
NC_003047.1\|WP_010968388.1\|172212_173604_+\|aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NC_003047.1\|WP_010968390.1\|175135_176095_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NC_003047.1\|WP_003531958.1\|178875_179958_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_003047.1\|WP_010968392.1\|182289_183357_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NC_003047.1\|WP_003531959.1\|177742_178876_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_003047.1\|WP_010968391.1\|176105_177734_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NC_003047.1\|WP_013844977.1\|166093_167563_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NC_003047.1\|WP_003531955.1\|183477_183858_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NC_003047.1\|WP_003537933.1\|169851_171015_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NC_003047.1\|WP_010968394.1\|185047_186853_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_003047.1\|WP_010968393.1\|183919_184939_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	7.38484e-165
NC_003047.1\|WP_010968386.1\|168639_169623_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.10359e-56
NC_003047.1\|WP_010968385.1\|167621_168632_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NC_003047.1\|WP_003531957.1\|180138_181998_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_003047.1\|WP_003537743.1\|173691_174036_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NC_003047.1\|WP_010968389.1\|174044_174899_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NC_003047.1\|WP_010968395.1\|186870_187689_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NC_003047.1\|WP_010968383.1\|164745_166032_+\|CpaE-family-protein	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120
NC_003047.1\|WP_010968382.1\|164042_164723_+\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	1.36517e-112
NC_003047.1\|WP_010968387.1\|171272_172082_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80

>NC_003047.1|WP_010968389.1|174044_174899_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NC_003047.1|WP_003537743.1|173691_174036_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NC_003047.1|WP_010968388.1|172212_173604_+|aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDEPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NC_003047.1|WP_010968387.1|171272_172082_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NC_003047.1|WP_003537933.1|169851_171015_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NC_003047.1|WP_010968386.1|168639_169623_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NC_003047.1|WP_010968385.1|167621_168632_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NC_003047.1|WP_013844977.1|166093_167563_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MFGKRGNEGPGKGGARGFSPAPPMPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NC_003047.1|WP_010968383.1|164745_166032_+|CpaE-family-protein
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NC_003047.1|WP_010968382.1|164042_164723_+|pilus-assembly-protein-CpaD
MALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN
>NC_003047.1|WP_010968390.1|175135_176095_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NC_003047.1|WP_010968391.1|176105_177734_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NC_003047.1|WP_003531959.1|177742_178876_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NC_003047.1|WP_003531958.1|178875_179958_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NC_003047.1|WP_003531957.1|180138_181998_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NC_003047.1|WP_010968392.1|182289_183357_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NC_003047.1|WP_003531955.1|183477_183858_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NC_003047.1|WP_010968393.1|183919_184939_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLAGLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NC_003047.1|WP_010968394.1|185047_186853_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NC_003047.1|WP_010968395.1|186870_187689_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Crispr_ID: NC_003047_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003047_2

1131916-1132026

Orphan

Consensus_repeat	Method
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003047_2

>merge|NC_003047|2|1131916-1132026|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAACGGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

>NC_003047|2|2|1131916-1132026|CRISPRCasFinder
GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	CCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAAAC
GGGCGAAGGGCCGGTTTATCCGAACATGTGAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003047.1\|WP_003527345.1\|1127281_1127437_-\|hypothetical-protein	unknown	unknown	unknown
NC_003047.1\|WP_010968995.1\|1121699_1124354_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NC_003047.1\|WP_003527334.1\|1133653_1134541_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NC_003047.1\|WP_003527344.1\|1127474_1127651_-\|hypothetical-protein	unknown	unknown	unknown
NC_003047.1\|WP_010969001.1\|1134630_1135644_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NC_003047.1\|WP_010969002.1\|1135744_1136146_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_003047.1\|WP_010969003.1\|1136284_1137211_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NC_003047.1\|WP_010969000.1\|1132434_1133433_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NC_003047.1\|WP_003527320.1\|1142388_1142709_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NC_003047.1\|WP_003527322.1\|1139821_1140778_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_003047.1\|WP_003527321.1\|1140806_1142309_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NC_003047.1\|WP_010969004.1\|1137226_1138714_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_003047.1\|WP_010968996.1\|1124779_1125718_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_003047.1\|WP_010968992.1\|1114615_1116013_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_003047.1\|WP_010968998.1\|1128722_1130012_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_003047.1\|WP_010969005.1\|1138706_1139726_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_003047.1\|WP_003527346.1\|1125727_1127017_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NC_003047.1\|WP_010968997.1\|1127789_1128650_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NC_003047.1\|WP_010968993.1\|1116047_1119008_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NC_003047.1\|WP_013844143.1\|1119018_1121346_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NC_003047.1\|WP_010969001.1\|1134630_1135644_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NC_003047.1\|WP_010968995.1\|1121699_1124354_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NC_003047.1\|WP_003527334.1\|1133653_1134541_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NC_003047.1\|WP_010969002.1\|1135744_1136146_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.33936e-42
NC_003047.1\|WP_010969003.1\|1136284_1137211_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NC_003047.1\|WP_010969000.1\|1132434_1133433_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NC_003047.1\|WP_003527320.1\|1142388_1142709_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NC_003047.1\|WP_003527322.1\|1139821_1140778_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NC_003047.1\|WP_003527321.1\|1140806_1142309_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NC_003047.1\|WP_010969004.1\|1137226_1138714_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.60612e-52
NC_003047.1\|WP_010968996.1\|1124779_1125718_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16
NC_003047.1\|WP_010968992.1\|1114615_1116013_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.58696e-52
NC_003047.1\|WP_010968998.1\|1128722_1130012_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NC_003047.1\|WP_010969005.1\|1138706_1139726_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NC_003047.1\|WP_003527346.1\|1125727_1127017_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81
NC_003047.1\|WP_010968997.1\|1127789_1128650_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63
NC_003047.1\|WP_010968993.1\|1116047_1119008_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NC_003047.1\|WP_013844143.1\|1119018_1121346_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.74445e-54

>NC_003047.1|WP_010968998.1|1128722_1130012_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NC_003047.1|WP_010968997.1|1127789_1128650_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NC_003047.1|WP_003527344.1|1127474_1127651_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NC_003047.1|WP_003527345.1|1127281_1127437_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NC_003047.1|WP_003527346.1|1125727_1127017_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NC_003047.1|WP_010968996.1|1124779_1125718_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NC_003047.1|WP_010968995.1|1121699_1124354_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTATGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NC_003047.1|WP_013844143.1|1119018_1121346_-|PAS-domain-containing-protein
MDKMADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NC_003047.1|WP_010968993.1|1116047_1119008_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NC_003047.1|WP_010968992.1|1114615_1116013_+|HAMP-domain-containing-histidine-kinase
MSRISVLFRTTAVRLSALYLVLFSLCAAFLVFYVTGMSERLLQQQTRDSIAAEVTQIADVYDRAGINGLLRSLERRARQPGANLYVIAGPNGEILAGNVAALQPGLLDDEGWKSEPFRYRRFTDESRAERHVALAQVLVLDNGLRILVGRDLQEPEKFRVLVRQALMVALGIMGLGALVIWFGIGRNALRRIDRMSEASTKIMAGDLSQRLPTSGSGDEFDRLSESLNAMLERIEKLNEGLKQVSDNIAHDLKTPLTRLRNKAEAALADTEGSNQSGALEQIIAESDQLIRTFNALLMISRVEAGSAVAEMSEVDLARIVADCVELYEPLAEDKEMRIEAEAAPGVAISGNRELISQALGNLIDNAIKYAEGAENPLIRVEMMRSDRHVVLTVADHGPGIPENMRGEVVKRFVRLDESRSKPGTGLGLSLVDAVMEMHRGSLELSATEEDGRGLAVRMVFPAVAT
>NC_003047.1|WP_010969000.1|1132434_1133433_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NC_003047.1|WP_003527334.1|1133653_1134541_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NC_003047.1|WP_010969001.1|1134630_1135644_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSIAIQLLRALTNVTVIATASRAETREWALKLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NC_003047.1|WP_010969002.1|1135744_1136146_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKGA
>NC_003047.1|WP_010969003.1|1136284_1137211_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NC_003047.1|WP_010969004.1|1137226_1138714_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NC_003047.1|WP_010969005.1|1138706_1139726_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NC_003047.1|WP_003527322.1|1139821_1140778_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NC_003047.1|WP_003527321.1|1140806_1142309_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NC_003047.1|WP_003527320.1|1142388_1142709_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Crispr_ID: NC_003047_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003047_3

2008150-2008262

Orphan

Consensus_repeat	Method
CCCTCATTCCTGTGCTTGTCACAGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003047_3

>merge|NC_003047|3|2008150-2008262|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAATGAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCTCCCTCATTCCTGTGCTCGTCACAGGAAT

>NC_003047|3|3|2008150-2008262|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAAT	GAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCT
CCCTCATTCCTGTGCTCGTCACAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003047.1\|WP_010969510.1\|2000999_2002193_-\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|227609
NC_003047.1\|WP_010969508.1\|1998825_1999509_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NC_003047.1\|WP_010969519.1\|2014010_2015402_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NC_003047.1\|WP_010969521.1\|2017891_2019787_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NC_003047.1\|WP_010969515.1\|2008650_2009073_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NC_003047.1\|WP_010969518.1\|2011873_2012269_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_003047.1\|WP_003535074.1\|2015606_2016149_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NC_003047.1\|WP_010969509.1\|1999806_2000628_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NC_003047.1\|WP_003534108.1\|1995968_1996706_+\|autoinducer-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|99777
NC_003047.1\|WP_010969516.1\|2009074_2010808_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NC_003047.1\|WP_010969512.1\|2003323_2004151_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NC_003047.1\|WP_003535076.1\|2016260_2016956_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_003047.1\|WP_010969520.1\|2017175_2017859_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NC_003047.1\|WP_010969513.1\|2004153_2005836_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_003047.1\|WP_010969507.1\|1997674_1998802_+\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NC_003047.1\|WP_013844511.1\|2010913_2011852_+\|hypothetical-protein	unknown	unknown	unknown
NC_003047.1\|WP_010969511.1\|2002290_2003313_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NC_003047.1\|WP_003534093.1\|2006104_2008024_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NC_003047.1\|WP_003535070.1\|2012404_2013778_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NC_003047.1\|WP_003534106.1\|1996862_1997507_+\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430

Protein	Function_ID	Function_description	E-value
NC_003047.1\|WP_010969510.1\|2000999_2002193_-\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NC_003047.1\|WP_010969508.1\|1998825_1999509_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NC_003047.1\|WP_010969521.1\|2017891_2019787_-\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_003047.1\|WP_010969515.1\|2008650_2009073_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23
NC_003047.1\|WP_010969518.1\|2011873_2012269_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44
NC_003047.1\|WP_003535074.1\|2015606_2016149_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NC_003047.1\|WP_010969509.1\|1999806_2000628_-\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	7.66456e-165
NC_003047.1\|WP_003534108.1\|1995968_1996706_+\|autoinducer-binding-domain-containing-protein	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NC_003047.1\|WP_010969516.1\|2009074_2010808_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NC_003047.1\|WP_010969512.1\|2003323_2004151_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NC_003047.1\|WP_003535076.1\|2016260_2016956_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NC_003047.1\|WP_010969520.1\|2017175_2017859_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NC_003047.1\|WP_010969513.1\|2004153_2005836_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_003047.1\|WP_010969507.1\|1997674_1998802_+\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.36883e-30
NC_003047.1\|WP_010969519.1\|2014010_2015402_-\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NC_003047.1\|WP_010969511.1\|2002290_2003313_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	8.02712e-88
NC_003047.1\|WP_003534093.1\|2006104_2008024_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NC_003047.1\|WP_003535070.1\|2012404_2013778_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NC_003047.1\|WP_003534106.1\|1996862_1997507_+\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97

>NC_003047.1|WP_003534093.1|2006104_2008024_+|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NC_003047.1|WP_010969513.1|2004153_2005836_-|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NC_003047.1|WP_010969512.1|2003323_2004151_-|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NC_003047.1|WP_010969511.1|2002290_2003313_+|LacI-family-DNA-binding-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVLMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NC_003047.1|WP_010969510.1|2000999_2002193_-|phytanoyl-CoA-dioxygenase-family-protein
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NC_003047.1|WP_010969509.1|1999806_2000628_-|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NC_003047.1|WP_010969508.1|1998825_1999509_-|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NC_003047.1|WP_010969507.1|1997674_1998802_+|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEASLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NC_003047.1|WP_003534106.1|1996862_1997507_+|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NC_003047.1|WP_003534108.1|1995968_1996706_+|autoinducer-binding-domain-containing-protein
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI
>NC_003047.1|WP_010969515.1|2008650_2009073_+|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NC_003047.1|WP_010969516.1|2009074_2010808_+|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRRALPADAVQVTLEKKGDIYLAALFREPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NC_003047.1|WP_013844511.1|2010913_2011852_+|hypothetical-protein
MPPAQEWGHAQQMQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NC_003047.1|WP_010969518.1|2011873_2012269_-|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NC_003047.1|WP_003535070.1|2012404_2013778_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NC_003047.1|WP_010969519.1|2014010_2015402_-|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NC_003047.1|WP_003535074.1|2015606_2016149_-|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NC_003047.1|WP_003535076.1|2016260_2016956_-|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NC_003047.1|WP_010969520.1|2017175_2017859_+|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NC_003047.1|WP_010969521.1|2017891_2019787_-|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1647299 : 1658548

uncultured_Mediterranean_phage(80.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969277.1\|1647299_1648334_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_014526708.1\|1648406_1649246_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.8e-32	34.7
WP_010969279.1\|1649238_1649958_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_010969280.1\|1650022_1651132_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_010969281.1\|1651226_1651433_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.1e-07	65.9
WP_010969282.1\|1651506_1652154_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|1652150_1652993_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_003534571.1\|1653129_1654413_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_010969283.1\|1654440_1655211_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	30.9
WP_014526709.1\|1655207_1655861_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969285.1\|1656032_1656686_+	biotin transport regulator	NA	NA	NA	NA
WP_010969286.1\|1657009_1658548_+	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8

DBSCAN-SWA_2

2501868 : 2511503

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|2501868_2503923_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_010969852.1\|2504355_2505390_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|2505413_2506601_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|2506860_2508771_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|2508816_2510820_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|2511053_2511503_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_3

2543264 : 2593101

Klosneuvirus(16.67%)

transposase,tRNA,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969874.1\|2543264_2543984_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010969875.1\|2544039_2544345_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|2544575_2545679_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_013844745.1\|2545885_2546056_-	hypothetical protein	NA	NA	NA	NA
WP_003534506.1\|2546151_2546607_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|2546603_2547074_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|2547119_2547662_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|2547836_2548022_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_010969879.1\|2548040_2549300_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-51	42.1
WP_010969880.1\|2549296_2549929_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003534495.1\|2549925_2550549_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_010969882.1\|2550907_2551921_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|2551924_2552845_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|2552841_2555655_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|2555665_2557735_+	membrane protein	NA	NA	NA	NA
WP_010969886.1\|2557749_2558301_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|2558558_2559551_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|2559716_2559923_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010969889.1\|2559985_2560894_+	cell filamentation protein	NA	NA	NA	NA
WP_010969890.1\|2561018_2561510_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|2561592_2562495_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|2562688_2563204_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|2563207_2564035_+	anti-sigma factor	NA	NA	NA	NA
WP_010969892.1\|2564157_2564586_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010969893.1\|2564582_2564834_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_010969894.1\|2564971_2566681_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_010969895.1\|2567152_2568304_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_003534438.1\|2568476_2569064_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_017263274.1\|2571103_2572027_-	phosphotransferase	Q75ZG1	Hepacivirus	8.8e-17	30.2
WP_010969898.1\|2572046_2572511_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969899.1\|2572507_2573428_-	cation transporter	NA	NA	NA	NA
WP_010969900.1\|2573596_2575786_-	anthranilate synthase	NA	NA	NA	NA
WP_178385068.1\|2575900_2575945_-	trpE operon leader peptide TrpLE	NA	NA	NA	NA
WP_010969901.1\|2576059_2578291_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_190311202.1\|2578567_2579401_+	extensin family protein	NA	NA	NA	NA
WP_013844754.1\|2579561_2581268_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|2581331_2582555_-	DUF2333 family protein	NA	NA	NA	NA
WP_010969905.1\|2582558_2583848_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|2584031_2585195_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|2585372_2585777_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|2585889_2587806_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|2587809_2588958_-	hypothetical protein	NA	NA	NA	NA
WP_010969909.1\|2589019_2590108_-	hypothetical protein	NA	NA	NA	NA
WP_010969910.1\|2590268_2590856_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	4.1e-52	54.7
WP_010969911.1\|2591142_2592099_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010969912.1\|2592255_2593101_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA

DBSCAN-SWA_4

3338256 : 3399230

Leptospira_phage(25.0%)

integrase,transposase,tRNA

attL 3345771:3345786|attR 3393130:3393145

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013844905.1\|3338256_3339354_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.6e-72	46.1
WP_010970392.1\|3339525_3340455_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_010970393.1\|3340459_3341167_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_010970394.1\|3341386_3342703_+	COG4223 family protein	NA	NA	NA	NA
WP_010970395.1\|3342721_3344359_+	heme biosynthesis protein HemY	NA	NA	NA	NA
WP_010970396.1\|3344394_3344874_+	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_010970397.1\|3344876_3345635_+	glutamine amidotransferase	NA	NA	NA	NA
3345771:3345786	attL	NA	NA	NA	NA
WP_010970398.1\|3345812_3347060_-	MFS transporter	NA	NA	NA	NA
WP_003531184.1\|3347295_3347589_+	YggT family protein	NA	NA	NA	NA
WP_003531185.1\|3347733_3348267_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	8.8e-46	52.7
WP_003531186.1\|3348424_3349027_+	hypothetical protein	NA	NA	NA	NA
WP_003531187.1\|3349073_3349580_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010970399.1\|3349923_3351750_-	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	2.3e-24	47.7
WP_010970400.1\|3351885_3353448_-	alkaline phosphatase	NA	NA	NA	NA
WP_003531190.1\|3353604_3353826_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_010970401.1\|3353950_3355258_+	amidase	NA	NA	NA	NA
WP_003531192.1\|3355319_3355481_-	hypothetical protein	NA	NA	NA	NA
WP_010970402.1\|3355757_3356261_+	hypothetical protein	NA	NA	NA	NA
WP_010970403.1\|3356402_3357227_-	DUF429 domain-containing protein	NA	NA	NA	NA
WP_086024532.1\|3357223_3358224_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.1e-12	24.7
WP_010970405.1\|3358558_3359788_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	1.5e-77	43.5
WP_010970406.1\|3359851_3360028_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_080606063.1\|3361625_3361826_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010970410.1\|3363059_3363509_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	6.1e-16	46.4
WP_010970411.1\|3363489_3363951_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010970412.1\|3364891_3365899_-	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_010970413.1\|3366185_3367034_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-32	33.2
WP_010970414.1\|3367411_3368254_-	L-proline cis-4-hydroxylase	NA	NA	NA	NA
WP_010970417.1\|3371641_3373165_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_010970418.1\|3373375_3374068_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010970419.1\|3374236_3375145_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_010970069.1\|3375746_3377081_-\|transposase	ISNCY-like element ISRm17 family transposase	NA	NA	NA	NA
WP_010970420.1\|3377605_3377863_-	hypothetical protein	NA	NA	NA	NA
WP_010970422.1\|3379283_3380294_-	membrane dipeptidase	NA	NA	NA	NA
WP_010970423.1\|3380521_3381811_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_080606065.1\|3382487_3382697_+	AAA family ATPase	NA	NA	NA	NA
WP_010970424.1\|3383403_3384420_+	membrane dipeptidase	NA	NA	NA	NA
WP_010970425.1\|3384419_3386297_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-19	32.2
WP_010970426.1\|3386366_3387965_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010970427.1\|3387987_3388932_+	ABC transporter permease	NA	NA	NA	NA
WP_010970428.1\|3388944_3389787_+	ABC transporter permease	NA	NA	NA	NA
WP_010970433.1\|3391945_3393589_+	MFS transporter	NA	NA	NA	NA
3393130:3393145	attR	NA	NA	NA	NA
WP_010970434.1\|3393735_3394194_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010970435.1\|3394190_3394547_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_080606068.1\|3395945_3397430_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_010970417.1\|3397706_3399230_+\|transposase	ISNCY family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_003078

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_003078_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003078_1

1085052-1085154

Orphan

Consensus_repeat	Method
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003078_1

>merge|NC_003078|1|1085052-1085154|CRISPRCasFinder
TCGGCGGCGGCGGCGGTGCGGGCGGCACCTCCACCGCGTCCGGCAGCCAGGCGACGGCCAACATCACCGTCGGTGTCGGCGGCAGCGGCGGTGCGGGCGGCAA

>NC_003078|1|1|1085052-1085154|CRISPRCasFinder
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CCTCCACCGCGTCCGGCAGCCAGGCGACGGCCAACATCACCGTCGGTG
TCGGCGGCAGCGGCGGTGCGGGCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003078.1\|WP_010975829.1\|1078419_1078818_+\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975831.1\|1079676_1080828_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_003078.1\|WP_010975825.1\|1070449_1071472_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_003078.1\|WP_010975837.1\|1091492_1091996_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_003078.1\|WP_010975823.1\|1068274_1069732_+\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_003078.1\|WP_028005617.1\|1089158_1090373_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_003078.1\|WP_010975841.1\|1097324_1098302_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_003078.1\|WP_041170101.1\|1090736_1091324_+\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975828.1\|1074956_1078295_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225483
NC_003078.1\|WP_010975830.1\|1078906_1079689_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_003078.1\|WP_010975840.1\|1095102_1097328_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_003078.1\|WP_010975827.1\|1072729_1074772_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_003078.1\|WP_017266908.1\|1092150_1092744_-\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975826.1\|1071536_1072724_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_003078.1\|WP_013850619.1\|1088139_1089051_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_003078.1\|WP_010975843.1\|1099120_1100011_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_003078.1\|WP_015456681.1\|1065779_1066976_+\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_003078.1\|WP_010975822.1\|1067003_1068278_+\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_003078.1\|WP_010975842.1\|1098298_1098922_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_003078.1\|WP_010975839.1\|1093240_1095022_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|179625

Protein	Function_ID	Function_description	E-value
NC_003078.1\|WP_010975831.1\|1079676_1080828_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.75634e-171
NC_003078.1\|WP_010975825.1\|1070449_1071472_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_010975837.1\|1091492_1091996_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	5.89068e-13
NC_003078.1\|WP_010975823.1\|1068274_1069732_+\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_003078.1\|WP_028005617.1\|1089158_1090373_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.93825e-65
NC_003078.1\|WP_010975841.1\|1097324_1098302_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NC_003078.1\|WP_010975828.1\|1074956_1078295_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	2.10379e-24
NC_003078.1\|WP_010975830.1\|1078906_1079689_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.55297e-66
NC_003078.1\|WP_010975840.1\|1095102_1097328_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_003078.1\|WP_010975827.1\|1072729_1074772_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_010975826.1\|1071536_1072724_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_013850619.1\|1088139_1089051_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.12689e-90
NC_003078.1\|WP_010975843.1\|1099120_1100011_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_003078.1\|WP_015456681.1\|1065779_1066976_+\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_003078.1\|WP_010975822.1\|1067003_1068278_+\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_003078.1\|WP_010975842.1\|1098298_1098922_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_003078.1\|WP_010975839.1\|1093240_1095022_+\|cation:proton-antiporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170

>NC_003078.1|WP_010975831.1|1079676_1080828_-|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NC_003078.1|WP_010975830.1|1078906_1079689_-|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFIRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_003078.1|WP_010975829.1|1078419_1078818_+|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_003078.1|WP_010975828.1|1074956_1078295_+|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPSAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGEGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_003078.1|WP_010975827.1|1072729_1074772_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALSVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_003078.1|WP_010975826.1|1071536_1072724_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MHIAQELADETCNSPRGAGHARLRYPSDRRTAIPRNRRPLEGLWRFRRVRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_003078.1|WP_010975825.1|1070449_1071472_+|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_003078.1|WP_010975823.1|1068274_1069732_+|phosphonoacetaldehyde-dehydrogenase
MTNAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_003078.1|WP_010975822.1|1067003_1068278_+|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NC_003078.1|WP_015456681.1|1065779_1066976_+|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKDAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA
>NC_003078.1|WP_013850619.1|1088139_1089051_+|sulfurtransferase
MRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_003078.1|WP_028005617.1|1089158_1090373_+|YeeE/YedE-family-protein
MTDISFDRSRYLPSAVVDRGPALVAGGALLIGFLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_003078.1|WP_041170101.1|1090736_1091324_+|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETVRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESFEARQDRALEVTSEFKLSGR
>NC_003078.1|WP_010975837.1|1091492_1091996_+|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGETFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKDFGKAMLRSYVLNVVPSIFPQECFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NC_003078.1|WP_017266908.1|1092150_1092744_-|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIDHADGRRFSLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLGRVNHAEASARARAKNGAAI
>NC_003078.1|WP_010975839.1|1093240_1095022_+|cation:proton-antiporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_003078.1|WP_010975840.1|1095102_1097328_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGCPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NC_003078.1|WP_010975841.1|1097324_1098302_-|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_003078.1|WP_010975842.1|1098298_1098922_-|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_003078.1|WP_010975843.1|1099120_1100011_-|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL

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Crispr_ID: NC_003078_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003078_2

1085247-1085328

Orphan

Consensus_repeat	Method
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003078_2

>merge|NC_003078|2|1085247-1085328|CRISPRCasFinder
TCGGCGGCGGTGGCGGGCAGGGCGGCGACGGTTCCGACGAGGCGGCGGGCAGGATCACCGTCGGCGGCGGCTTCGGCGGCAG

>NC_003078|2|2|1085247-1085328|CRISPRCasFinder
TCGGCGGCGGTGGCGGGCAGGGCGGCG	ACGGTTCCGACGAGGCGGCGGGCAGGA
TCACCGTCGGCGGCGGCTTCGGCGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_003078.1\|WP_010975829.1\|1078419_1078818_+\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975831.1\|1079676_1080828_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_003078.1\|WP_010975825.1\|1070449_1071472_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_003078.1\|WP_010975837.1\|1091492_1091996_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_003078.1\|WP_010975823.1\|1068274_1069732_+\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_003078.1\|WP_028005617.1\|1089158_1090373_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_003078.1\|WP_010975841.1\|1097324_1098302_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_003078.1\|WP_041170101.1\|1090736_1091324_+\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975828.1\|1074956_1078295_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225483
NC_003078.1\|WP_010975830.1\|1078906_1079689_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_003078.1\|WP_010975840.1\|1095102_1097328_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_003078.1\|WP_010975827.1\|1072729_1074772_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_003078.1\|WP_017266908.1\|1092150_1092744_-\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975826.1\|1071536_1072724_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_003078.1\|WP_013850619.1\|1088139_1089051_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_003078.1\|WP_010975843.1\|1099120_1100011_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_003078.1\|WP_015456681.1\|1065779_1066976_+\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_003078.1\|WP_010975822.1\|1067003_1068278_+\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_003078.1\|WP_010975842.1\|1098298_1098922_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_003078.1\|WP_010975839.1\|1093240_1095022_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|179625

Protein	Function_ID	Function_description	E-value
NC_003078.1\|WP_010975831.1\|1079676_1080828_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.75634e-171
NC_003078.1\|WP_010975825.1\|1070449_1071472_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_010975837.1\|1091492_1091996_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	5.89068e-13
NC_003078.1\|WP_010975823.1\|1068274_1069732_+\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_003078.1\|WP_028005617.1\|1089158_1090373_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.93825e-65
NC_003078.1\|WP_010975841.1\|1097324_1098302_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NC_003078.1\|WP_010975828.1\|1074956_1078295_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	2.10379e-24
NC_003078.1\|WP_010975830.1\|1078906_1079689_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.55297e-66
NC_003078.1\|WP_010975840.1\|1095102_1097328_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_003078.1\|WP_010975827.1\|1072729_1074772_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_010975826.1\|1071536_1072724_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_013850619.1\|1088139_1089051_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.12689e-90
NC_003078.1\|WP_010975843.1\|1099120_1100011_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_003078.1\|WP_015456681.1\|1065779_1066976_+\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_003078.1\|WP_010975822.1\|1067003_1068278_+\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_003078.1\|WP_010975842.1\|1098298_1098922_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_003078.1\|WP_010975839.1\|1093240_1095022_+\|cation:proton-antiporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170

>NC_003078.1|WP_010975831.1|1079676_1080828_-|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NC_003078.1|WP_010975830.1|1078906_1079689_-|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFIRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_003078.1|WP_010975829.1|1078419_1078818_+|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_003078.1|WP_010975828.1|1074956_1078295_+|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPSAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGEGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_003078.1|WP_010975827.1|1072729_1074772_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALSVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_003078.1|WP_010975826.1|1071536_1072724_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MHIAQELADETCNSPRGAGHARLRYPSDRRTAIPRNRRPLEGLWRFRRVRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_003078.1|WP_010975825.1|1070449_1071472_+|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_003078.1|WP_010975823.1|1068274_1069732_+|phosphonoacetaldehyde-dehydrogenase
MTNAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_003078.1|WP_010975822.1|1067003_1068278_+|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NC_003078.1|WP_015456681.1|1065779_1066976_+|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKDAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA
>NC_003078.1|WP_013850619.1|1088139_1089051_+|sulfurtransferase
MRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_003078.1|WP_028005617.1|1089158_1090373_+|YeeE/YedE-family-protein
MTDISFDRSRYLPSAVVDRGPALVAGGALLIGFLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_003078.1|WP_041170101.1|1090736_1091324_+|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETVRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESFEARQDRALEVTSEFKLSGR
>NC_003078.1|WP_010975837.1|1091492_1091996_+|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGETFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKDFGKAMLRSYVLNVVPSIFPQECFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NC_003078.1|WP_017266908.1|1092150_1092744_-|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIDHADGRRFSLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLGRVNHAEASARARAKNGAAI
>NC_003078.1|WP_010975839.1|1093240_1095022_+|cation:proton-antiporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_003078.1|WP_010975840.1|1095102_1097328_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGCPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NC_003078.1|WP_010975841.1|1097324_1098302_-|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_003078.1|WP_010975842.1|1098298_1098922_-|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_003078.1|WP_010975843.1|1099120_1100011_-|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL

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Crispr_ID: NC_003078_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003078_3

1085427-1085531

Orphan

Consensus_repeat	Method
TCGGCGGCGGCGGCGGTGCGGGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003078_3

>merge|NC_003078|3|1085427-1085531|CRISPRCasFinder
TCGGCGGCGGCGGCGGCGTCGGCGGCGCCGGAAGCAGCACGGCCGCCGAAAAAGAGCACAGCCACACGATCGATCTCGTCGTCGGCGGCAGCGGCGGTGTCGGCG

>NC_003078|3|3|1085427-1085531|CRISPRCasFinder
TCGGCGGCGGCGGCGGCGTCGGCGGCG	CCGGAAGCAGCACGGCCGCCGAAAAAGAGCACAGCCACACGATCGATCTCG
TCGTCGGCGGCAGCGGCGGTGTCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_003078.1\|WP_010975829.1\|1078419_1078818_+\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975831.1\|1079676_1080828_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_003078.1\|WP_010975825.1\|1070449_1071472_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_003078.1\|WP_010975837.1\|1091492_1091996_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_003078.1\|WP_010975823.1\|1068274_1069732_+\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_003078.1\|WP_028005617.1\|1089158_1090373_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_003078.1\|WP_010975841.1\|1097324_1098302_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_003078.1\|WP_041170101.1\|1090736_1091324_+\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975828.1\|1074956_1078295_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225483
NC_003078.1\|WP_010975830.1\|1078906_1079689_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_003078.1\|WP_010975840.1\|1095102_1097328_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_003078.1\|WP_010975827.1\|1072729_1074772_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_003078.1\|WP_017266908.1\|1092150_1092744_-\|hypothetical-protein	unknown	unknown	unknown
NC_003078.1\|WP_010975826.1\|1071536_1072724_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_003078.1\|WP_013850619.1\|1088139_1089051_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_003078.1\|WP_010975843.1\|1099120_1100011_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_003078.1\|WP_015456681.1\|1065779_1066976_+\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NC_003078.1\|WP_010975822.1\|1067003_1068278_+\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_003078.1\|WP_010975842.1\|1098298_1098922_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_003078.1\|WP_010975839.1\|1093240_1095022_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|179625

Protein	Function_ID	Function_description	E-value
NC_003078.1\|WP_010975831.1\|1079676_1080828_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.75634e-171
NC_003078.1\|WP_010975825.1\|1070449_1071472_+\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_010975837.1\|1091492_1091996_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	5.89068e-13
NC_003078.1\|WP_010975823.1\|1068274_1069732_+\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_003078.1\|WP_028005617.1\|1089158_1090373_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.93825e-65
NC_003078.1\|WP_010975841.1\|1097324_1098302_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NC_003078.1\|WP_010975828.1\|1074956_1078295_+\|M10-family-metallopeptidase-C-terminal-domain-containing-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	2.10379e-24
NC_003078.1\|WP_010975830.1\|1078906_1079689_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.55297e-66
NC_003078.1\|WP_010975840.1\|1095102_1097328_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_003078.1\|WP_010975827.1\|1072729_1074772_+\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_010975826.1\|1071536_1072724_+\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_003078.1\|WP_013850619.1\|1088139_1089051_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	8.12689e-90
NC_003078.1\|WP_010975843.1\|1099120_1100011_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_003078.1\|WP_015456681.1\|1065779_1066976_+\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NC_003078.1\|WP_010975822.1\|1067003_1068278_+\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_003078.1\|WP_010975842.1\|1098298_1098922_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_003078.1\|WP_010975839.1\|1093240_1095022_+\|cation:proton-antiporter	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	5.59837e-170

>NC_003078.1|WP_010975831.1|1079676_1080828_-|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACFA
>NC_003078.1|WP_010975830.1|1078906_1079689_-|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFIRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_003078.1|WP_010975829.1|1078419_1078818_+|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_003078.1|WP_010975828.1|1074956_1078295_+|M10-family-metallopeptidase-C-terminal-domain-containing-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPSAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGEGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_003078.1|WP_010975827.1|1072729_1074772_+|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALSVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_003078.1|WP_010975826.1|1071536_1072724_+|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MHIAQELADETCNSPRGAGHARLRYPSDRRTAIPRNRRPLEGLWRFRRVRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGTICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRPRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_003078.1|WP_010975825.1|1070449_1071472_+|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFEKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_003078.1|WP_010975823.1|1068274_1069732_+|phosphonoacetaldehyde-dehydrogenase
MTNAEVTIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_003078.1|WP_010975822.1|1067003_1068278_+|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL
>NC_003078.1|WP_015456681.1|1065779_1066976_+|2-aminoethylphosphonate--pyruvate-transaminase
MPADAKTNDVLEAPRLGEPYLLTPGPLTTAFSVKDAMLRDWGSWDGDFRGMTAELRRELLAIAGDESGQYDCVPMQGSGSFSVEAMLGSFIPRDGKVLVLMNGAYGQRIAQTLKYLGRAHVSIDKGDYMPPRGSEVAAALDADPAITHVVVVHCETSSGILNPLKEISEAVYSRGRKLLVDSMSAFGAVPAGVGDFRYEAIVSSANKCIEGVPGFGFVIARKSELEAAKDRSHSLSLDVHAQWAYMNKTGQWRFTPPTHVVAAFLEALRLHRKEGGVAGRGARYANNRDVMVAGMRQLGFETLLGDEWLSPIIVTFFSPAHPNFKFERFYELMKARGFIIYPGKLTVVDSFRIGCIGQMDSHVMQKVVAAAAESLAKMRVDTATPPALALAERARLAA
>NC_003078.1|WP_013850619.1|1088139_1089051_+|sulfurtransferase
MRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_003078.1|WP_028005617.1|1089158_1090373_+|YeeE/YedE-family-protein
MTDISFDRSRYLPSAVVDRGPALVAGGALLIGFLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLPSFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPEPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_003078.1|WP_041170101.1|1090736_1091324_+|hypothetical-protein
MAEEAVELARREIAYCETLLAKGGLNVLSETVRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESFEARQDRALEVTSEFKLSGR
>NC_003078.1|WP_010975837.1|1091492_1091996_+|GNAT-family-N-acetyltransferase
MIEFRSLTEADFLMLCEWLNSPHMRAHYQKTPITIEEVQGKYSERLSPSHPTHCHIARYNGETFGMLQCYSLRNYPDFASEIGEQDGVAVDLFIGEERFIGKDFGKAMLRSYVLNVVPSIFPQECFICHAKENKIAIRGSLSAGFLPYRDVIERGVESLLLSFDRPI
>NC_003078.1|WP_017266908.1|1092150_1092744_-|hypothetical-protein
MLWNIQAVLFLSTAFDHLIDATMIIDHADGRRFSLDGAPTLYTLKPGIKKDPVRRWALPDRVFFGNGACAILAGVFLSEAPLPGFYAERIIPGEGFAGNHIFVTDGVIAFDHHGYSLRSRLLTYHTNGWAGRSPEGWNCRLERVTFDLLDRRDLNDNQMLGPEQYLHDPIVRAKTYLGRVNHAEASARARAKNGAAI
>NC_003078.1|WP_010975839.1|1093240_1095022_+|cation:proton-antiporter
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFRASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_003078.1|WP_010975840.1|1095102_1097328_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALKVTYSARPPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWDGDRLTLWSKSQFVVNEQAEIAAVFGLPPENVQVICPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGCPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAIHHATGRRVHELPIMIESLL
>NC_003078.1|WP_010975841.1|1097324_1098302_-|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_003078.1|WP_010975842.1|1098298_1098922_-|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_003078.1|WP_010975843.1|1099120_1100011_-|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651661-651708	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085126	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053952	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636655-636702	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151348	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233702-233749	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644720-644767	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634529-634576	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655865	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302457-1302504	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895953-896000	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772746	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558706-558753	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292203	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423320-1423367	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373118	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795261-795308	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658334-658381	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225705	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998388	0	1.0
NC_003078_1	1.1\|1085079\|48\|NC_003078\|CRISPRCasFinder	1085079-1085126	48	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085131	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085300	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054126	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151522	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656039	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772920	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292377	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373292	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225879	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998562	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085305	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651487-651513	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636481-636507	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233528-233554	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644546-644572	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634355-634381	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302283-1302309	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895779-895805	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558532-558558	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423146-1423172	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795087-795113	0	1.0
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658160-658186	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651283-651333	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636277-636327	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233324-233374	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644342-644392	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634151-634201	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302079-1302129	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895575-895625	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558328-558378	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422942-1422992	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794883-794933	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657956-658006	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085454-1085504	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151676-1151726	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773074-773124	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292531-292581	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373446-373496	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226033-1226083	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998716-998766	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085459-1085509	0	1.0
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054280-1054330	1	0.98
NC_003078_3	3.1\|1085454\|51\|NC_003078\|CRISPRCasFinder	1085454-1085504	51	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656190-656240	1	0.98
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	778651-778677	5	0.815
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	405901-405927	5	0.815
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP049043	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_6, complete sequence	43383-43409	5	0.815
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	MN585980	Microbacterium phage Gina, complete genome	24050-24076	5	0.815
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	MN586059	Microbacterium phage Teamocil, complete genome	24149-24175	5	0.815
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	341978-342004	6	0.778
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	339070-339096	6	0.778
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	345316-345342	6	0.778
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	353491-353517	6	0.778
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	339070-339096	6	0.778
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	562461-562487	6	0.778
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	MK279840	Mycobacterium phage JacoRen57, complete genome	26434-26460	7	0.741
NC_003078_2	2.1\|1085274\|27\|NC_003078\|CRISPRCasFinder	1085274-1085300	27	NZ_CP015090	Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence	75369-75395	7	0.741

1. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

2. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

3. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

4. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

5. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

6. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

7. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

8. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

9. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

10. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

11. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

12. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

13. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

14. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

15. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

16. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

17. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

18. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

19. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

20. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

21. spacer 1.1|1085079|48|NC_003078|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	CRISPR spacer
cctccaccgcgtccggcagccaggcgacggccaacatcaccgtcggtg	Protospacer
************************************************

22. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

23. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

24. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

25. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

26. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

27. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

28. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

29. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

30. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

31. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

32. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

33. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

34. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

35. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

36. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

37. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

38. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

39. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

40. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

41. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

42. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

acggttccgacgaggcggcgggcagga	CRISPR spacer
acggttccgacgaggcggcgggcagga	Protospacer
***************************

43. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

44. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

45. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

46. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

47. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

48. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

49. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

50. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

51. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

52. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

53. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

54. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

55. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

56. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

57. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

58. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

59. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

60. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

61. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	Protospacer
***************************************************

62. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	Protospacer
*****************************.*********************

63. spacer 3.1|1085454|51|NC_003078|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.98

ccggaagcagcacggccgccgaaaaagagcacagccacacgatcgatctcg	CRISPR spacer
ccggaagcagcacggccgccgaaaaagagtacagccacacgatcgatctcg	Protospacer
*****************************.*********************

64. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
tggaatccgacgaggcggcgggcacga	Protospacer
  *. ******************* **

65. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
cggcttccggcgtggcggcgggcagga	Protospacer
  * *****.** **************

66. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP049043 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_6, complete sequence) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
gccgttccgagaaggcggcgggcaggt	Protospacer
.* ******* .**************

67. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to MN585980 (Microbacterium phage Gina, complete genome) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
gcggctccgtcgaggcggcgggcacca	Protospacer
.***.**** **************  *

68. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to MN586059 (Microbacterium phage Teamocil, complete genome) position: , mismatch: 5, identity: 0.815

acggttccgacgaggcggcgggcagga	CRISPR spacer
gcggctccgtcgaggcggcgggcacca	Protospacer
.***.**** **************  *

69. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

70. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

71. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

72. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

73. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

74. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 6, identity: 0.778

acggttccgacgaggcggcgggcagga	CRISPR spacer
tcggtttcgccgaggcggcgggcaaat	Protospacer
 *****.** **************..

75. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to MK279840 (Mycobacterium phage JacoRen57, complete genome) position: , mismatch: 7, identity: 0.741

acggttccgacgaggcggcgggcagga	CRISPR spacer
gtacgcccgacgaggcggcggtcagga	Protospacer
...  .*************** *****

76. spacer 2.1|1085274|27|NC_003078|CRISPRCasFinder matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 7, identity: 0.741

acggttccgacgaggcggcgggcagga	CRISPR spacer
ttggttccggcgaggcggcgggcgtag	Protospacer
 .*******.*************. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1321480 : 1329780

Sinorhizobium_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010976037.1\|1321480_1321666_+	hypothetical protein	A0A291AUP5	Sinorhizobium_phage	6.2e-15	65.3
WP_010976038.1\|1321683_1322694_-	transporter	NA	NA	NA	NA
WP_010976039.1\|1322895_1324509_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	3.1e-142	51.7
WP_164822026.1\|1324614_1324767_-	hypothetical protein	A0A291AUN9	Sinorhizobium_phage	5.4e-17	84.0
WP_086024526.1\|1325889_1327108_+\|transposase	IS3-like element ISRm1 family transposase	A0A1B0Z042	Pseudomonas_phage	4.2e-75	53.8
WP_010976041.1\|1327058_1327481_-	hypothetical protein	A0A076GD39	Sinorhizobium_phage	6.8e-41	72.6
WP_010976042.1\|1327535_1327778_-	hypothetical protein	J7F8X5	Agrobacterium_phage	1.1e-16	61.8
WP_127658806.1\|1327662_1327899_-	hypothetical protein	A0A291AUV7	Sinorhizobium_phage	2.9e-25	73.1
WP_015456701.1\|1329056_1329278_+	hypothetical protein	NA	NA	NA	NA
WP_010976045.1\|1329333_1329780_+	hypothetical protein	A0A291AUP2	Sinorhizobium_phage	2.1e-24	52.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_003037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

395729 : 404056

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107592306.1\|395729_396098_+	DUF4055 domain-containing protein	A0A0A0RTF5	Escherichia_phage	5.0e-08	33.9
WP_003535606.1\|396649_396853_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_010967381.1\|396953_397382_-	hypothetical protein	NA	NA	NA	NA
WP_010967384.1\|399042_400680_-	chaperonin GroEL	A0A219YK78	uncultured_virus	2.5e-176	63.1
WP_010967385.1\|400755_401052_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.4e-21	57.6
WP_010967386.1\|401606_401768_+	hypothetical protein	NA	NA	NA	NA
WP_010967387.1\|402137_402587_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	8.6e-18	47.5
WP_010967389.1\|403177_404056_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.9e-21	27.6

DBSCAN-SWA_2

879858 : 904767

Sinorhizobium_phage(20.0%)

transposase,integrase

attL 901067:901081|attR 904246:904260

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010967829.1\|879858_880314_-\|transposase	transposase	NA	NA	NA	NA
WP_010967830.1\|880619_882017_+	endo-1,3-1,4-beta-glycanase EglC	A0A0F6SIL6	Sinorhizobium_phage	1.9e-18	30.0
WP_162198851.1\|883251_883728_-	ester cyclase	NA	NA	NA	NA
WP_015445472.1\|884132_887522_-	AAA family ATPase	NA	NA	NA	NA
WP_013845572.1\|890926_891643_-	molecular chaperone	NA	NA	NA	NA
WP_010967838.1\|891837_893592_+	Kef family K(+) transporter	NA	NA	NA	NA
WP_010967839.1\|893871_894747_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014528734.1\|894842_895922_+	alkene reductase	NA	NA	NA	NA
WP_010967841.1\|895918_896896_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010967842.1\|897346_897643_-	hypothetical protein	NA	NA	NA	NA
WP_010967845.1\|899329_899647_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.9e-22	55.9
WP_164920394.1\|899768_900988_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.2e-75	53.8
901067:901081	attL	NA	NA	NA	NA
WP_010967847.1\|901119_902349_+\|integrase	tyrosine-type recombinase/integrase	A7XX23	Thermus_virus	3.3e-11	28.5
WP_010967848.1\|902342_903257_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010967849.1\|903253_904243_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	7.2e-09	29.9
WP_010967850.1\|904392_904767_-\|transposase	transposase	NA	NA	NA	NA
904246:904260	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1157276 : 1228765

Synechococcus_phage(17.65%)

transposase,integrase

attL 1193730:1193745|attR 1234329:1234344

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010967509.1\|1157276_1158278_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.9e-43	34.9
WP_041170005.1\|1158609_1159611_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010968074.1\|1159790_1160825_+	sterol desaturase family protein	NA	NA	NA	NA
WP_010968075.1\|1160821_1161133_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_010968077.1\|1161473_1161689_-	KUP/HAK/KT family potassium transporter	NA	NA	NA	NA
WP_014528318.1\|1162601_1164041_+	AAA family ATPase	NA	NA	NA	NA
WP_010968080.1\|1164047_1165091_+	sensor histidine kinase	NA	NA	NA	NA
WP_010968081.1\|1165102_1165492_+	response regulator	NA	NA	NA	NA
WP_010968082.1\|1165851_1166895_-	sulfate/molybdate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-30	37.4
WP_010968083.1\|1166976_1168002_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010968084.1\|1168554_1168746_-	CsbD family protein	NA	NA	NA	NA
WP_010968085.1\|1169452_1170676_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_010968086.1\|1170763_1172395_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010968087.1\|1173081_1174143_-	aldo/keto reductase	NA	NA	NA	NA
WP_010968088.1\|1174157_1175102_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	5.1e-20	31.1
WP_010968089.1\|1175079_1176078_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.9e-10	24.9
WP_010968090.1\|1176080_1177079_-	ABC transporter permease	NA	NA	NA	NA
WP_010968091.1\|1177078_1178065_-	ABC transporter permease	NA	NA	NA	NA
WP_010968092.1\|1178361_1179402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010968095.1\|1180656_1181691_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010968096.1\|1181687_1182566_+	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_010968097.1\|1182562_1183813_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_010968098.1\|1183831_1184482_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_010968099.1\|1184497_1185799_+	NtaA/DmoA family FMN-dependent monooxygenase	NA	NA	NA	NA
WP_041170006.1\|1185924_1187319_-	sulfite oxidase	NA	NA	NA	NA
WP_015445510.1\|1187745_1188924_+	Fic family protein	D7RWK9	Brochothrix_phage	3.3e-37	29.6
WP_015445511.1\|1189052_1189946_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041170007.1\|1190028_1190955_+	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_013851125.1\|1190957_1191221_+	DUF2798 domain-containing protein	NA	NA	NA	NA
WP_010968104.1\|1191762_1193313_+	calcium-binding protein	NA	NA	NA	NA
1193730:1193745	attL	NA	NA	NA	NA
WP_010968105.1\|1193877_1195005_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	6.7e-35	29.8
WP_010968106.1\|1195053_1195701_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010968107.1\|1195712_1197479_-	Rieske 2Fe-2S domain-containing protein	I3ULH6	Synechococcus_phage	3.5e-06	39.2
WP_041170008.1\|1197521_1198427_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_010968109.1\|1198463_1199327_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_010968110.1\|1199734_1200667_-	ABC transporter permease	NA	NA	NA	NA
WP_010968111.1\|1200659_1201739_-	ABC transporter permease	NA	NA	NA	NA
WP_010968112.1\|1201707_1203258_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-12	25.8
WP_010968113.1\|1203290_1204310_-	BMP family protein	NA	NA	NA	NA
WP_010968114.1\|1204555_1205452_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_010968115.1\|1205621_1206413_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010968116.1\|1206554_1207823_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.7e-98	51.8
WP_010968117.1\|1207894_1208869_-	D-glycerate dehydrogenase	A0A285PXZ1	Cedratvirus	5.0e-31	35.2
WP_010968118.1\|1208865_1210071_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_010968119.1\|1210164_1211025_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	3.0e-11	36.0
WP_010968120.1\|1211021_1211975_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_010968121.1\|1212030_1213287_-	aminomethyl transferase family protein	NA	NA	NA	NA
WP_003526806.1\|1215300_1215624_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_041170012.1\|1216881_1217778_+	aldo/keto reductase	NA	NA	NA	NA
WP_010968125.1\|1217747_1218461_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	2.7e-05	32.9
WP_010968126.1\|1218607_1219489_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010968127.1\|1219614_1220355_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.0e-13	28.5
WP_051076796.1\|1221524_1221947_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014531779.1\|1222669_1222966_-	hypothetical protein	NA	NA	NA	NA
WP_162471705.1\|1222965_1224588_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.5e-104	40.2
WP_010967845.1\|1224651_1224969_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.9e-22	55.9
WP_010967849.1\|1225060_1226050_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	7.2e-09	29.9
WP_010967848.1\|1226046_1226961_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010967847.1\|1226954_1228184_-\|integrase	tyrosine-type recombinase/integrase	A7XX23	Thermus_virus	3.3e-11	28.5
WP_010967850.1\|1228390_1228765_-\|transposase	transposase	NA	NA	NA	NA
1234329:1234344	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003047

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_003078

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_003037

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection