CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	2 crisprs	DEDDh,csa3,cas3,WYL,DinG,RT	4	15	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_003902_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003902_1

610977-612007

Orphan

Consensus_repeat	Method
CTCACTGCCGGCTATGGCAGCAC	CRISPRCasFinder

21 spacers

The CRISPR arrays of NC_003902_1

>merge|NC_003902|1|610977-612007|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCACGCTCACTGGCGCCGATCAGAGTCAGCTGATCGCAGGCTATGGAAGTACCGAGACCGCGGGGAACGGCAGCGAGTTGATCGCCGGCTACGGCAGCACCGGCGTGGCCGGATCCGACAGCACCATCGTTGCCGGCTATGGCAGCTCTCAAACGGCCGGAGGCGGAAGCACGCTGACTGCCGGGTATGGCAGCACACAGACCGCCCGCAATGGCAGCGAGCTGACGGCCGGTTACGGCAGTACGGAAACCGCCGGTGCAGACAGCTCGCTGATCGCAGGCTACGGCAGCACGCAAACCTCCGGCGGCGACAGCTCGTTGACTGCCGGCTATGGCAGTACCCAAACCGCGCAGAACGGCAGCGACCTCACCGCCGGCTACGGCAGCACCAGCACGGCGGGCACCGATAGCTCGCTGATCGCCGGCTACGGCAGCACCCAGACCTCGGGCGGAGAGAGCTCGCTCACTGCCGGCTATGGCAGCACGCAGACGGCGCAGGACGGCAGCGACCTCACCGCCGGCTATGGCAGCACAGGCACCGCAGGTGCAGATAGCTCCCTGATTGCTGGTTATGGCAGTACGCAGACATCCGGCAACGACAGCTCGCTGACGGCGGGCTACGGCAGCACCCAAACCGCCCGTACCGGCAGCGACCTCACTGCGGGTTACGGCAGCACCTCCACCGCTGGTGCGGACAGCACGCTGATCGCCGGTTATGGCAGCACCCAGACTTCCGGCGGGGACAGTTCGCTCACCGCCGGCTACGGCAGCACCCAAACCGCGCGCAAGGGTAGCGACCTCACGACGGGGTACGGCAGCACCTCGACCGCCGGCGCGGACAGCACCTTGATCGCCGGCTACGGCAGCACGCAGACCTCGGGTAGCGAGAGTTCGCTCACGGCTGGCTATGGCAGTACGCAGACCGCACGCAAGGGCAGTGACCTCACCGCCGGCTACGGCAGCACCTCGACCGCCGGTGCGGACAGCACCTTGATCGCCGGCTACGGCAGCAC

>NC_003902|1|1|610977-612007|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCAC	GCTCACTGGCGCCGATCAGAGTCAG
CTGATCGCAGGCTATGGAAGTAC	CGAGACCGCGGGGAACGGCAGCGAG
TTGATCGCCGGCTACGGCAGCAC	CGGCGTGGCCGGATCCGACAGCACC
ATCGTTGCCGGCTATGGCAGCTC	TCAAACGGCCGGAGGCGGAAGCACG
CTGACTGCCGGGTATGGCAGCAC	ACAGACCGCCCGCAATGGCAGCGAG
CTGACGGCCGGTTACGGCAGTAC	GGAAACCGCCGGTGCAGACAGCTCG
CTGATCGCAGGCTACGGCAGCAC	GCAAACCTCCGGCGGCGACAGCTCG
TTGACTGCCGGCTATGGCAGTAC	CCAAACCGCGCAGAACGGCAGCGAC
CTCACCGCCGGCTACGGCAGCAC	CAGCACGGCGGGCACCGATAGCTCG
CTGATCGCCGGCTACGGCAGCAC	CCAGACCTCGGGCGGAGAGAGCTCG
CTCACTGCCGGCTATGGCAGCAC	GCAGACGGCGCAGGACGGCAGCGAC
CTCACCGCCGGCTATGGCAGCAC	AGGCACCGCAGGTGCAGATAGCTCC
CTGATTGCTGGTTATGGCAGTAC	GCAGACATCCGGCAACGACAGCTCG
CTGACGGCGGGCTACGGCAGCAC	CCAAACCGCCCGTACCGGCAGCGAC
CTCACTGCGGGTTACGGCAGCAC	CTCCACCGCTGGTGCGGACAGCACG
CTGATCGCCGGTTATGGCAGCAC	CCAGACTTCCGGCGGGGACAGTTCG
CTCACCGCCGGCTACGGCAGCAC	CCAAACCGCGCGCAAGGGTAGCGAC
CTCACGACGGGGTACGGCAGCAC	CTCGACCGCCGGCGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC	GCAGACCTCGGGTAGCGAGAGTTCG
CTCACGGCTGGCTATGGCAGTAC	GCAGACCGCACGCAAGGGCAGTGAC
CTCACCGCCGGCTACGGCAGCAC	CTCGACCGCCGGTGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003902.1\|WP_011035749.1\|602143_603907_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NC_003902.1\|WP_165442006.1\|607182_607830_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_003902.1\|WP_012437216.1\|608455_609430_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NC_003902.1\|WP_011035750.1\|603903_605238_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NC_003902.1\|WP_138922023.1\|599108_599807_-\|hypothetical-protein	unknown	unknown	unknown
NC_003902.1\|WP_011035757.1\|614867_615140_-\|DNA-binding-transcriptional-regulator-Fis	unknown	unknown	gnl\|CDD\|179020
NC_003902.1\|WP_011035761.1\|617852_618773_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NC_003902.1\|WP_011035747.1\|599815_601399_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_003902.1\|WP_011035748.1\|601474_602089_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_003902.1\|WP_011035758.1\|615255_616545_-\|DUF3426-domain-containing-protein	unknown	unknown	gnl\|CDD\|378759
NC_003902.1\|WP_011035762.1\|619259_620180_+\|hypothetical-protein	unknown	unknown	unknown
NC_003902.1\|WP_011035764.1\|621175_622543_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NC_003902.1\|WP_011035759.1\|616830_617208_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_003902.1\|WP_012437220.1\|617356_617851_+\|hypothetical-protein	unknown	unknown	unknown
NC_003902.1\|WP_011035766.1\|622989_623472_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NC_003902.1\|WP_011035765.1\|622585_622972_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_003902.1\|WP_011035751.1\|605234_605678_+\|hypothetical-protein	unknown	unknown	unknown
NC_003902.1\|WP_011035754.1\|607826_608459_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_003902.1\|WP_011035763.1\|620176_620542_+\|hypothetical-protein	unknown	unknown	unknown
NC_003902.1\|WP_019237208.1\|605674_607183_+\|TIGR04222-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|275063

Protein	Function_ID	Function_description	E-value
NC_003902.1\|WP_011035749.1\|602143_603907_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0
NC_003902.1\|WP_165442006.1\|607182_607830_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	5.55436e-08
NC_003902.1\|WP_012437216.1\|608455_609430_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	3.29452e-127
NC_003902.1\|WP_011035750.1\|603903_605238_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	4.11721e-45
NC_003902.1\|WP_011035757.1\|614867_615140_-\|DNA-binding-transcriptional-regulator-Fis	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	3.72538e-51
NC_003902.1\|WP_011035761.1\|617852_618773_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.9931e-137
NC_003902.1\|WP_011035747.1\|599815_601399_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_003902.1\|WP_011035748.1\|601474_602089_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	5.8325e-19
NC_003902.1\|WP_011035758.1\|615255_616545_-\|DUF3426-domain-containing-protein	gnl\|CDD\|378759	pfam11906, DUF3426, Protein of unknown function (DUF3426). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.	1.29994e-34
NC_003902.1\|WP_011035764.1\|621175_622543_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NC_003902.1\|WP_011035759.1\|616830_617208_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.88605e-09
NC_003902.1\|WP_011035766.1\|622989_623472_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	7.59427e-76
NC_003902.1\|WP_011035765.1\|622585_622972_-\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	4.16224e-50
NC_003902.1\|WP_011035754.1\|607826_608459_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.79069e-34
NC_003902.1\|WP_019237208.1\|605674_607183_+\|TIGR04222-domain-containing-membrane-protein	gnl\|CDD\|275063	TIGR04222, integral_membrane_protein, TIGR04222 domain. The majority of the proteins with a domain as described by this model have an extreme C-terminal sequence that is consists of extremely low-complexity sequence, rich in Ser or in Gly interspersed with Cys. That C-terminal region resembles ribosomal natural product precursors, although there is no evidence that C-terminal regions of these proteins undergo any modification or have any such function.	8.57037e-42

>NC_003902.1|WP_012437216.1|608455_609430_+|phosphatidate-cytidylyltransferase
MNPYAFSGQLQQSSMHQQTLWLFSGIALVLVVATLISETLRWRARAQPSAVLDNLVARIRAWWVMAGVVGIAFVFGRAGVIGLFALVSLFALREFITLTPTRRGDYYALLAAFYIVLPWQYGLVWTGWYGMYTLLIPVYAFLVLPILATIGGDTTRYLERTAKVQWGLMICVFCISHVPALLNLEIPGYAGRNLLLIAFLVIVVQSSDVLQYVWGKLAGRHLIAPKLSPSKTVEGFIGGVLSASLLGMALWWITPFAPWHAFGLALVANLMGFFGGLVMSAIKRDRGIKDWGHMIEGHGGVLDRLDSVCFAAPVFFHLIRYGWA
>NC_003902.1|WP_011035754.1|607826_608459_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MIARLIARACSGAIRTLTGARALWRGCAPSNERRVYYGNHASHGDFVLIWSSLPASLRHEVRPVAAADYWQRTALRRYLIHAVFNGVLIERDAARRTRDPVECLCDAVDAGDSLILFPEGTRNPDEGVLPFKSGLYHLARQRPELEFVPVWIDNLKRVMPKGKWLPLPLLCTTTFGAPLRLEADEDKQAFLARAREALLALSPDQLEARA
>NC_003902.1|WP_165442006.1|607182_607830_+|CDP-alcohol-phosphatidyltransferase-family-protein
MAHETTGLRARQRQLARALRGRGATPNGVSWVGIAFAALAGLMFYIALSAPAREGAAPLLLALLGLQGRLWCNRLDGVLARQARXVSRAGEVPQQPPDRLSNVLVCIGLGYGLQASVQWAAQLGWAAALCCVATAYVRMLGLACGTAEPRQGPMSRVQRMHWLSLMTVLALPLQWMGQPRAAAWVLIGALAVLIAGAVLTVVLRLRMIVRALEWT
>NC_003902.1|WP_019237208.1|605674_607183_+|TIGR04222-domain-containing-membrane-protein
MTTSPAVPLQATPEQRALWLRLQAYAFGPDADALPAFERRVAQQAHCSVAVAQQLVEEYRRFCFLACTSTAQATPSPLVDQVWHTHLTDTREYWDSFCPQVLQATLHHQPGRGSTAEDARFQQQYRATLERYELQFGAPPALLWPAPRPAPTAVPAAHDDASDDASSDALRALRGEPAPPSVRRLPRAVIGWAFAAAVAAWLAYSANGGVPQPLQWRGVHFLPFFITLIALGWSTSAWLRRALRGGRARAVDAVDASEFAYLSGGADRVADLLFTELLVRNAVYLDRDEDAQARRWVRWQPRIAVPPALEPALQALRSAEDPTVAWQALRGLAGPVRQQLIDKGLWLAPGAARWVRAVSTVPVAVVWVLGACKLVIGVQGGSPVGYLLGCMVLTSVLVLGFLLVPVRRTLSGDARLQARRQAVRRDAARTGADPGEAVALYGTVALVGTPWASYHEIRAPNTHHHDSTGSSCGGGGDGGDGGGGDSGGDGGGGCGGCGGGGD
>NC_003902.1|WP_011035751.1|605234_605678_+|hypothetical-protein
MTAVMTLASMRALLRQGAAIDRCAVLLLAAAVLLLGITDAPTVAQVAYALSALAGLAQRYWAFRVGLDADLLDAVLGQLERGHADDTQAAQQLDQALQDIGLLRHAPPVRDWTARWRGMRGLLRRQLLCAALQVLVLAIGLLAKGML
>NC_003902.1|WP_011035750.1|603903_605238_+|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MNAGARPFARAALWLAVLGPFFFLSYGLANTLAGRAASVPSVVFGWEHGMPFWPWTIVPYWSIDVFYAVSFFTCRTRRQLDTHALRLFTAQLLCVSCFLLWPLRYSFVRPDTEGVFGWLFAVLLGFDKPYNQAPSLHIVLLVVLWVRYGAQLQGMWRWLLHGWFALIGISVLTTYQHHFIDVPTGLAAGWLCVWLLPERIAAPWTDARLARDPRRWRLAALYLGGAGVTAGMALWLGGAALWLLWMSGALLLVALNYALLGPGGFQKRSDGQLSLAARWLYAPYLLAAWCNSRLWTRRAPLPRAVCDDVWLGRIPLPAQRAAFAVVDVSAELSLRHAHANDRIIPMLDLVAPAPASLRAAAQAIEAARAHGPVLVCCALGYSRSAASVVTWLVLSQRAASISEAMACVRAARPSIVLGPHHQAAIAAACANDAAADALIAQVPA
>NC_003902.1|WP_011035749.1|602143_603907_+|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MRTVVEREFASFDGAPLFYRHWPVQAAADAATPPKAVVLLHRGHEHSGRVMHLAEELQLPDAQFFAWDARGNGRSPGARGDAPGFDALVRDLDSFIAHIGATHGIAVQDIVVIAQSVGAVVASTWVHDYAPPLRALVLASPAFKVKLYVPFARAGLALMQALRGNFFVNSYVKPQWLTHDPARVDSYRTDPLITRPISVRVLLGLYAAGDRVVADAQAITVPTQLLVSGADFVVHRGPQDRFYENLRSPIKQRHFLPGFFHDTLGERDRAIAIAQIRQFVSERFAQPPVRADLRDAHRAGPSFEEAERLAWPSQRNSLQDLRWRGVRAGLRLGGTLSEGIALGLQTGFDSGSTLDYIYRNQARGRGPLGRMIDRNYLNAIGWRGIRIRGAHLGELLRATATRLRQAGQPVRVLDIAAGHGRYVLEALGSGAQRADAIVLRDFSPLNVTQGAALIQALGAGDIARFEQGDAFDPVSVGAVDPAPTLAVVSGLYELFADNDQVARSLAGVAAAVPPGGYLLYTGQPWHPQLEFIARALTSHRDGVAWVMRRRSQQEMDGLVEAAGFRKVDQRIDAFGIFTVSLAQRINA
>NC_003902.1|WP_011035748.1|601474_602089_+|CDP-alcohol-phosphatidyltransferase-family-protein
MASIYALKGRFQDLLRPMVGALYRGGITANQVTLIAAAISVLVAAVVYRAGTSWPLLYLLLPVWMLLRMALNAIDGMLAREFGQQSRLGAYLNELCDVFADATLYLSLLGVPGVNASALWSFALLAALTEYAGVLGLMVGAGRRYDGPMGKSDRAFVIGALGLALAFGLLGGHGVTGVALLLCLACAATVWRRVRAGLADAAAR
>NC_003902.1|WP_011035747.1|599815_601399_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MASDFLPVRRALLSVSDKTGLIDLARALVARNVELLSTGGTAKAIRDAGLPVKDVAELTGFPEMMDGRVKTLHPLVHGGLLGRAGVDEAVMAEHGIAPIDLLVLNLYPFESVTAKADCTLADAVENIDIGGPAMLRSAAKNFARVAVATDPAQYADLLAELEANNGQLSAAQRFALSVAAFNRVAQYDAAISNYLSAVADSAESVPTRSPFPAQINSNFIKVMDLRYGENPHQSGAFYRDLYPVPGTLATFQQLQGKELSYNNLADADAAWECVRQFDAPACVIVKHANPCGVAVGVACGDAYELAYATDPTSAFGGILAFNRTLDAATAKAILDRQFVEVLIAPDYEPGALDYATKKANVRVLKIPHGAGLNNYDTKRIGSGLLMQSADNRGMSLGELSVVTKRAPSDAELADLLFAWRVAKYVKSNAIVYAKDSRTIGVGAGQMSRVVSAKIAALKAEEAKLTVAGSVMASDAFFPFRDGIDAAAAAGIQAVIQPGGSMRDGEVIAAADEHGLAMVFTGVRHFRH
>NC_003902.1|WP_138922023.1|599108_599807_-|hypothetical-protein
MNNSATNHLLKIVIAARDLRLHASFIDGWKRIFGEAESLEIHRKIGLFYKLIDTAAQEVLAADPEQADAVNHWRSQLYTGLSAAAARNWTDFHAHIDSHTINYLKMQSRVVHLTNGDKAIDYEELMRAKSLLLEAIEEIKNSDLSGNAKVAVIRRIRTLLAAIDDYSLTGNEDVLDQFKSGIYDFAANPEIREKGLGEKFAQAAEVLANIVTSVTGFQQLAAPTLKLLGLGK
>NC_003902.1|WP_011035757.1|614867_615140_-|DNA-binding-transcriptional-regulator-Fis
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATLRKKLKEYGLT
>NC_003902.1|WP_011035758.1|615255_616545_-|DUF3426-domain-containing-protein
MSETPPPRRPLATFLRAAPAAPPLVPTPPAPSTAPADTVVPAPEPAPVAAPLATPVPAPVRPLPAPPRSTEAAPPDATARAPDTLIAPTRRDAPLPASPLPLPATPPAPVPAHSSAQTADPAMRRSADDRPTAAAAIAPAVVATSTAPLAPAAAAHATNAPDQPAIAAQSAASAPGATVTQTPQASPPANQDGQPAPAAPQAAPEAEAGASTEAELEADPDDTATTPAPTSTSASASASASTSTSTPASPSSSPTPAPTLEPAFARRGLVRPRLRASGWQWAVLVGLVLLLGLQIVIADRARLAGDARWRPLVSAACAVARCALPPWRDPATLTLLTRDVRPLPAYPGVLQIQASFRNDARWAQAWPWLQLSLSDADGRVIGTRVCSPQDYLGQAPAAQDTLAPGQAVQVAFRVREPAASTAAFSFDFR
>NC_003902.1|WP_011035759.1|616830_617208_-|helix-turn-helix-transcriptional-regulator
MSKLYERVREARSLTKLTQEALAGELGVTRSAVAQWEMAEGTAPSVDNLIGLAKRSGMTFEYLATGRGERVFGPPVSSIAEEPAQYRHLDEQQRVLLSRFDALAPRQRTGLLDLLLAEGKPRRRR
>NC_003902.1|WP_012437220.1|617356_617851_+|hypothetical-protein
MCKRLWGWRAAPRPKPVPPTPWPAYSPLDPAVARFAGAARYLVWRRDQDWTAVIDGLHWGPALAPRWWAWRHRHWRLLAAGMGVLGSAGGLWLASASAGGWLLAWAALGLVELGMRASAVRQASRWRCAALQRAGWQPVTQLRAISVEDAVTTARIRSGELRPE
>NC_003902.1|WP_011035761.1|617852_618773_-|50S-ribosomal-protein-L11-methyltransferase
MPFLELTLPCTRATQPRFENALEDVGALAVTMLDAHAGTINERAILEPGVGEVRLWEETELTALFDGDSDPLMLLAALEAFDPSLDTRHATFRSVEDSAWERAWIDQFKPMRFGARTFIVPWNQDLPEEANTPDAAVVRLDPGLAFGSGTHQTTALCLRWLDALAGEGQLQGCSVLDFGCGSGILALAALKLGAANAVGVDYDPQALLATAENAERNAMEAQMQVYLPQDEPVQTYPVVLANILATALDALAETLAARVAPGGRIALSGIMQGQEQDLVQRYTPWFEHLHCEYDAEWVRIDGVRRH
>NC_003902.1|WP_011035762.1|619259_620180_+|hypothetical-protein
MPLVRARHLWLLLAPAALAAAWWQARPQTAGVAPAAVVETAAAHVAPTAGQPHAVPERSAALQLARGTAGEPPQDLYRYAQQLQQQVRAGDAQAGWRLSRVYDYCAPYAVSPAGYAADSAWIASQPAPGVAAMHAARERVAQRCAGFAPSDGLSPRVVAQQRQAAARAGSLAAEAAMLALGEPLQTTPGYKRALVQRVLASRDPEAYLALAPAMGARASGDDSLDGYVAGDQFAELAWQVAACRLGLDCSAQSTLVTSYCANAGICSRDSAQDFVSFVFDAAVPRQGADKVDEMVDTLVTRSETQS
>NC_003902.1|WP_011035763.1|620176_620542_+|hypothetical-protein
MNYRRLAHGAKFWFWVALFVAYSAAAVGIVMIDTADHRYQPLSVKRITVGADAQLRQHGASQVAAVYRASSGMPFASLPAGATFQVVWPDGSTETMTVVDPSSPSGAVPVPGSQQPAAKRR
>NC_003902.1|WP_011035764.1|621175_622543_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGPAASSDSYLNIPALIAAAEVTDAQAIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGGPLGDDIVANTKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISEELRAEIGKVCVDACIRIGYRGAGTFEFLFEGGRFYFIEMNTRIQVEHPVTERITGIDLVCEQLRIAAGHKLSIKQSDIVLRGHAIECRINAEDPETFMPNPGLITAFHPPGGPGVRVDTHIYAGYKVPPNYDSMIGKLIVHGPDRETAIARMRVALSEMVVDGIKTNIPLQQRIMRDKGFQAGGQNIHYLEKRLAERKNKSIALV
>NC_003902.1|WP_011035765.1|622585_622972_-|four-helix-bundle-protein
MENRESAQRPHERLDAWRDSMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMNALRRRGAA
>NC_003902.1|WP_011035766.1|622989_623472_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRKIKKLIDLLEESNLAEIEIKEGEESVRLARVPKGTQVMSAPMQQYAPAPAAPAPAATMPMQSPTEASTGGAKQGAALPEGHVLRAPMVGTFYTSPSPDKPAFVTVGQQVKAGETLAIIEAMKMFNPIEADISGTIVAVLSDTGQPVEFDQPLFVIG

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Crispr_ID: NC_003902_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003902_2

4969859-4970005

Orphan

Consensus_repeat	Method
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003902_2

>merge|NC_003902|2|4969859-4970005|CRISPRCasFinder
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGCCCCCCCCCCTGATACCGCACCCTCATCCGCCCTTCGGGCACCTTCTCCCGGAGGGAGAGGGAAGATGCAGGCCCAGGCGCAGAACAAATCCGCACAGCACGGC

>NC_003902|2|2|4969859-4970005|CRISPRCasFinder
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGC	CCCCCCCCCTGATACCGCACCCTCATCCGCCCTTCGGGCACCTTCTCCCGGAGGGAGAG
GGAAGATGCAGGCCCAGGCGCAGAACAAATCCGCACAGCACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003902.1\|WP_011039223.1\|4960202_4960592_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|235261
NC_003902.1\|WP_011039220.1\|4955586_4956849_-\|tetracycline-resistance-MFS-efflux-pump	unknown	unknown	gnl\|CDD\|340946
NC_003902.1\|WP_011039237.1\|4980317_4980863_-\|DUF1905-domain-containing-protein	unknown	unknown	gnl\|CDD\|378097
NC_003902.1\|WP_011039236.1\|4978763_4980125_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925
NC_003902.1\|WP_019238148.1\|4969380_4969527_-\|hypothetical-protein	unknown	unknown	unknown
NC_003902.1\|WP_011039235.1\|4976109_4978410_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NC_003902.1\|WP_012439682.1\|4954897_4955491_-\|biliverdin-producing-heme-oxygenase	unknown	unknown	gnl\|CDD\|350857
NC_003902.1\|WP_011039222.1\|4959750_4959960_-\|hypothetical-protein	unknown	unknown	unknown
NC_003902.1\|WP_040942423.1\|4973535_4973745_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NC_003902.1\|WP_011039227.1\|4964958_4968975_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|227250
NC_003902.1\|WP_011039221.1\|4957403_4959563_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|274067
NC_003902.1\|WP_011039225.1\|4961597_4962413_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NC_003902.1\|WP_011270106.1\|4962456_4964517_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NC_003902.1\|WP_011039229.1\|4970784_4972254_-\|DUF3375-domain-containing-protein	unknown	unknown	gnl\|CDD\|371764
NC_003902.1\|WP_011039231.1\|4973009_4973453_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
NC_003902.1\|WP_016945065.1\|4972273_4972876_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_003902.1\|WP_016945064.1\|4973741_4974665_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|182548
NC_003902.1\|WP_011039218.1\|4952996_4954901_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NC_003902.1\|WP_011039234.1\|4974661_4976113_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NC_003902.1\|WP_011039228.1\|4970090_4970798_-\|DUF4194-domain-containing-protein	unknown	unknown	gnl\|CDD\|372745

Protein	Function_ID	Function_description	E-value
NC_003902.1\|WP_011039223.1\|4960202_4960592_-\|YchJ-family-protein	gnl\|CDD\|235261	PRK04233, PRK04233, hypothetical protein; Provisional.	3.39194e-82
NC_003902.1\|WP_011039220.1\|4955586_4956849_-\|tetracycline-resistance-MFS-efflux-pump	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.33602e-135
NC_003902.1\|WP_011039237.1\|4980317_4980863_-\|DUF1905-domain-containing-protein	gnl\|CDD\|378097	pfam08922, DUF1905, Domain of unknown function (DUF1905). This domain is found in a set of hypothetical bacterial proteins.	1.50632e-22
NC_003902.1\|WP_011039229.1\|4970784_4972254_-\|DUF3375-domain-containing-protein	gnl\|CDD\|371764	pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.	1.98096e-147
NC_003902.1\|WP_011039235.1\|4976109_4978410_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	3.73506e-75
NC_003902.1\|WP_012439682.1\|4954897_4955491_-\|biliverdin-producing-heme-oxygenase	gnl\|CDD\|350857	cd19166, HemeO-bac, heme oxygenase found in pathogenic bacteria. This subfamily contains bacterial heme oxygenase (HO, EC 1.14.14.18), where HO is part of a pathway for iron acquisition from host heme and heme products. Most of these proteins have yet to be characterized. HO catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes heme oxygenase (pa-HO) from Pseudomonas aeruginosa, an opportunistic pathogen that causes a variety of systemic infections, particularly in those afflicted with cystic fibrosis, as well as cancer and AIDS patients who are immunosuppressed. Pa-HO, expressed by the PigA gene, is critical for the acquisition of host iron since there is essentially no free iron in mammals, and is unusual since it hydroxylates heme predominantly at the delta-meso heme carbon, while all other well-studied HOs hydroxylate the alpha-meso carbon. Also included in this family is Neisseria meningitidis HO which is substantially different from the human HO, with the reaction product being ferric biliverdin IXalpha rather than reduced iron and free biliverdin IXalpha. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.	8.04641e-46
NC_003902.1\|WP_040942423.1\|4973535_4973745_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	4.13546e-12
NC_003902.1\|WP_011039227.1\|4964958_4968975_-\|ATP-binding-protein	gnl\|CDD\|227250	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown].	3.04333e-176
NC_003902.1\|WP_011039221.1\|4957403_4959563_-\|lytic-murein-transglycosylase	gnl\|CDD\|274067	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.55777e-140
NC_003902.1\|WP_011039225.1\|4961597_4962413_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	3.89647e-34
NC_003902.1\|WP_011270106.1\|4962456_4964517_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.58598e-93
NC_003902.1\|WP_011039236.1\|4978763_4980125_-\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0
NC_003902.1\|WP_011039231.1\|4973009_4973453_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	2.23838e-14
NC_003902.1\|WP_016945065.1\|4972273_4972876_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	7.10518e-110
NC_003902.1\|WP_016945064.1\|4973741_4974665_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	6.15277e-73
NC_003902.1\|WP_011039218.1\|4952996_4954901_-\|GAF-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.24122e-124
NC_003902.1\|WP_011039234.1\|4974661_4976113_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	5.92538e-66
NC_003902.1\|WP_011039228.1\|4970090_4970798_-\|DUF4194-domain-containing-protein	gnl\|CDD\|372745	pfam13835, DUF4194, Domain of unknown function (DUF4194).	3.08309e-44

>NC_003902.1|WP_019238148.1|4969380_4969527_-|hypothetical-protein
MGARKANCVSNGNGNGNGNGNGKNSSNGSSSSSGNNANNSNSGEKKNT
>NC_003902.1|WP_011039227.1|4964958_4968975_-|ATP-binding-protein
MNSQSNLSPASPGASLFAETLAEQRAQQFRMRRLQVHNWGTFNGLTEVPIAEKGFLFVGRSGSGKSTLLDAMSALLTPPSIVDFNAAAREAERSGRDRSLVSYVRGAWADQQDSASGEIATQYLRKGATWTALVLEYRNAQGEAVSLVRLFWIAGSGNAAADVRRHYMVVPRAFDVASELEGFDLDLRKLKARLGEDVAHFDGFAGYAERFRHALGIGNDMALRLLHKTQSAKNLGDLNAFLRGFMLDEPRTFEAADRLVEDFAELDGAHHAVVTARRQVETLSPAREHHAALMALRRSVGELRELQLGVDSYREQQRLALLEARLQEVDSQDRGLAGEEGQRRESLDNHEQKLAGLEREQRAAGGEQIEELERERVRVERERDERLRRRAQIEQACRQLGTALAAGASGFAAQVAHAQGVLDGGKQHASTLDEAIAERMGERRDDERRFAEIRAELDALKKAPSSMPAPMQALRARLCDDTGIAESALPFVGELLQVREDQVAWRGAIERVLHGFAQSLLVDERHYAQVSEWVNRTHIGTRLVYFRVRRNDELHSRRVDPNALPGKLQLREHAFTEWLRNELTRRFDYACVDNAAALRNADRAITREGQVKHPGDRYEKDDRHAVNDRKRWLLGHDNRDKLKVFEREAQALAQRIASCDADVAALRKQREQDQEKRLAAHTLVERDWDEIDVGPKLQRLSDIDEQLQQLREGDSGLRALGQAIDTARTLRDQAKRTYEDVRLERAQLARERVRLEQQQAACAGRAGTAALTPTQLQGLQERLAALAPLSLDTLEAHFRVVERGLAEQLAESQGRDSRLSAQLLECFRRYCQQWPEDSGDFTVSLASADDFLARLDRLESDGLPRHEHRFFDLLQTQSKNNLLALQRHTAEAHKGIKQRMDEVNASLEQVPFNRDTILTIEVSDRRLAEVQEFQQQLRAVLSHQQTEDRALAEAQFATLRTLVARLGAQEPEARRWREQVLDVRLHVEFIGVELDAQTRAQVEIYRSGAGKSGGQRQKLATTCLAAALRYQLGGEDGELPRYCAVVLDEAFDKADNEFTALAMNIFENFGFQMVVATPLKSVMTLEPFIGGACFVEISGRHNSGVLLIEYDEQAQRLKLPERSRGEEAAAPPAEQGGAVAPGERAERAPVIAVESGHAASVHLAETTAVLVQGDAVTDGQSRGHKRTRAAATASTAAPVPAPAGKRSTSAAATSATAAPATGTADASNARRKQAATPDTPPKPTKPASTRSGSSGTPAAKRTTTAKAAAVLKASNATPAVAAKRTGKAPKRVSKPASAQQVAKPVSKSKPTAKPATAASAKSRVASTRGSAPKARSKR
>NC_003902.1|WP_011270106.1|4962456_4964517_-|TonB-dependent-siderophore-receptor
MTPLPTRRHLLFVSLFAAMPAAAQEASLLDAIVVSEKRALYRPEKAAGATRTQTPVERIPQAIQVVPRSVIDEQQLTRLVDVVANVSNVQPGGTQGNRSETFVIRGFEASSYAVDGILLNPTQNFTETVRDLANVAQVEVLKGPAAVLYGRGEPGGVINLVTLRPDAVFGGNASVQVAEHGLRRVQSSVTGPLSPTLSARLSAAVQQTGSFRDAQADGDRVFVSPSLAWRPNERLRADLDIEYTRQTSPGDRGLVAIDGVVRGPAQRSFGEPWSRNRGISRTARGRIEVDATDWLTLRQIVNHQDGDSGRGVADFTGFSADRAFLQRRAVRQDQQVRATTSQTEALARFDTGPLRHQVLAGAEYVDAHRHTDEARAPLARISVRTPVQGALPGTYVPAREIAVDARYAALYVQDQISLGERWDVLAGVRWDDVQQTTLDNGSRTREDGRRASPRLGVVWKAAPQLSLYANTSTSFRPRSASVFAGGSAPPETGRQYELGMKSALLDNRVLATVAAFQITKDNVATADPNNDGFVLVTGQQRVRGLELDVTGELTPNWRLILGAGYLDAQVTRDTVIASGNRLRGVPRVSASLWSTYHVASGPLYGLTLGAGAVHVGEREGDLANSYRIPGYTRFDASAAYRFGGRYQLALLLRNLGNRFYIEQPVTQTTNYPGAPRTLSATLSMEF
>NC_003902.1|WP_011039225.1|4961597_4962413_+|TSUP-family-transporter
MRRYAVAPVVRSTALLELIPTELPWLLCIAFVAGLVDAAVGGGGLIQLPGLFATLPQQAPSLILGTNKFSAMFGTGASAWRYARNVRFPWRPVLYATAAAFTFSFLGATAVSLLPKQAVRPLILVLLIAMLGYTLIKKDFGALHRPRAIGRRELVTALAMGAAIGFYDGFFGPGTGSFLIFLFIRFFGLDFLRASAAAKVVNLATNLAALSFFLPTGQVMLAVGVPMAAANVAGAVAGTRLALRGGTPLIRQLFLVLVVVLIGKMGWDLLH
>NC_003902.1|WP_011039223.1|4960202_4960592_-|YchJ-family-protein
MSPSTPTDPCPCGRAAGYAQCCGQYHAGAAAPDAETLMRARYSAYVRRNVDYLLASWHPSTRPAELALDEGGRTTWLGLNVQRAIATGADTAEVVFLARYRIGGGSAVRMTEHSRFVREDGHWYYLDAR
>NC_003902.1|WP_011039222.1|4959750_4959960_-|hypothetical-protein
MATFNLWQWLLLALVVFAIVLPTLVAAAMIWFGPRHDTPRLPRSVRRSGDATGATPALSLLSGITGDGS
>NC_003902.1|WP_011039221.1|4957403_4959563_-|lytic-murein-transglycosylase
MTPLWRALPLLLGLAPFAAWADPAFDRCLAGLQTQAAAKGVDAASFQRFTAGLAADPSVLPLLDAQPEFTTPIWDYLASLVDSQRVSDGQAMLVTHRELLTRLSEQTGVDPATIVAVWGVESDYGRITGKRPLLVSLATLSCAGRRQPFFRGEFLALLGLLQQGDLAPEGLTGSWAGAFGQTQFMPSTYARIAIDGDGDGRRDLVASIPDALASTANYLVKAGWERARPWGMEVRLPAGFDANKAGRTRRQPLQAWQAAGLLGTDGKPLAPTGLPAETAAALLLPAGPTGPAFLVFRNYDAIYAYNAAESYALSIALLADRLRGGAGLVASWPTDDPGLGRPERRQLQQLLLARGHQIGEADGMVGTATRRAIQVEQTRLGLQPADGRAGQRILTALRTAPPVTGAAVRGTAFTLPAAYPAFVQSPIVQKASPMSDVTGLRTGDFHGFPSLLIDTPYSTAAISLFGGQLLSFVPKGGQDVMWLSPTAKQPPTPIRGGAPVCWPYFGRQDQTGDVPAHGFVRTVPWQLTESRREDDGTLVLTLTPPTFDDLALRLHMTLRIGRTLEQRLVTENVSKAPVRFTQALHNYFRVGDALKVSVQGLDGLDYLDKYENYAIAHRQQGDWSLRDPRDPGRSDRIYTNAGGHYTLTDPVLGRRIDIRTEGSRSLVAWNPGEDAASKMADVGTGWRDYVCLEAANAGPDVIELAPGASHTLGQTISVE
>NC_003902.1|WP_011039220.1|4955586_4956849_-|tetracycline-resistance-MFS-efflux-pump
MSISPDSASAPAPGRRRAALIFIFITVLIDVLSFGVIIPVLPDLVRQFTGGDYAAAAGWIGWFGFLFAAIQFVCSPLQGTLSDRYGRRPVILLSCLGLGLDFILMALAHTLPMLLLARVISGVCSASFSTANAYIADVTPADKRAGAFGMLGAAFGIGFVAGPLIGGWLGSIGLRWPFWFAAGLALLNVLYGWFVLPESLPPERRTARLDWSHANPFGALKLLRRYPQVFGLASVVFLANLAHYVYPSIFVLFASYQYHWGPREVSWVLAGVGVCSIIVNAVLVGRIVRWLGERRALLLGLGCGVIGFVIYGLAGSGRTFLLGVPISAFWAVAAPAAQALITREVGADAQGRVQGALTSLVSLGGIAGPLLFANVFAWFIGSGAPLHLPGAPWLLAGLLLAAGWFMAWKRAGRSPALAQG
>NC_003902.1|WP_012439682.1|4954897_4955491_-|biliverdin-producing-heme-oxygenase
MRSDTPVAPLSAALALRHATQEAHTRVEAVPLMQALGQGHIDAETYAQVLRRHHRLLAGFEEQLSDWLVTLVGSGWQYRRRVPALREDLRVLGQPVDAAVPPPPASSEAVRWGMLYVIEGSQLGGRVIARMLRKRQPGLAHALHYFELADEDPAGWRRFQAVLEQRLQSAAARADAIAGAQAMFAHFHTCLAAEARP
>NC_003902.1|WP_011039218.1|4952996_4954901_-|GAF-domain-containing-protein
MSTATNPLDLDVCAREPIHIPGLIQPYGVLLVIDPADGRIVQASTTAADLLGVPMAALLGMPYTQVLTLPEAQPFAVDDQPQHLMHAEVRFPQRATPPDSAWVAAWHLYPQQWLVEMEPRDARLLDVTLREAMPLLRSVERDPGIAEAAVRVAKGLRSLIGFDRVMIYRFDEEWNGDIIAEARKPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVGYQPSPIQPTVHPQLGTPVDLSDVSLRSVSPVHLEYLANMGVTATLVASIVVNDALWGLISCHHYSPHFTNHAMRDVTDAVARTLAGRIGALQAVARARLESVLLTVREKLITDFNDAEHMTVELLDDMAPDLMDVVDADGVAIFHGNDISRHGTTPDVAALRRIRDHIESEHHDALREDAVGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQIQQIKWAGNPQLAKLEDIPNSRLSPRKSFDLWQQTVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGTANAAHRLLFVNTAFADVCGSDVAELIGRELQTLYASDAPRANVELLQDALRNGRAAYVTLPLQVSDGAPVYRQFHLEPLPSPSGVTAHWLLQLRDPE
>NC_003902.1|WP_011039228.1|4970090_4970798_-|DUF4194-domain-containing-protein
MNWSEQAALDAHDDDDADAHASALRLPASDAASAAQGGALFLGDTGTLPFDARRALCQLLAGPSIDAQRHGGLWPALLRNEVAVRQVLCELFLELVLDREGGVAFTRQADTAELESPTLLRSAPLTFIESVLLLFLRQQLAEADTRGERAVVDEAQLVEALSVYEKNVSTDRAGFTRRVMTAIGKMRENQLLSRLRGSEERYEVSPVLKLLFSAEDVQALVVAYRELREGEVAAD
>NC_003902.1|WP_011039229.1|4970784_4972254_-|DUF3375-domain-containing-protein
MKHQARIAGYRHLRDQPAWKLLAADHAPELIGLLQTLLMDGERRLPSAVLHARLQRQLDALRGDELSRELPRTAQAYLAHWLAQGWLERRLPEGAAEEEYELSRAATQAIRFIAGLRESGSSATESRLSLVIQQLVQLAGQTEADPDARLAALRAERERIDAEIERVAAGRVGALDGKRALERTRDLIHLSDELAEDFHRVRDDFEQLNRQFRERIIDDEGARGDVLEQLFNGVDVIADSEAGRTFEAFWSLLNDTQQSSQLDQALDALLARGFARKLDRRERAFLRGLTGTLLERGGEVHTVMQHFARSLRGFVQSRGYLEQRRLNQLLKQAQGEALHLRESLHATTATGYTQALSGSRLRSLSQWRLHDPRLTQVDGRVYAADAAEISLDSVGDLVAQSEIDVRSLRRDLHALLGERPRLTIGDALQQRPAVQGLGSVIGYLSLGTRHGLVIDGHMETVQWEGGDGTLRRARIPLVWFTREKRNELV
>NC_003902.1|WP_016945065.1|4972273_4972876_-|GTP-cyclohydrolase-I-FolE
MSQSDQPDSSVTQAQAEEAVRTLLRWAGEDPAREGLLDTPRRVAEAYGDWFSGYREEPRAYLERTFEEVAGYDELIVLRDISYESHCEHHMAPIIGKVHVGYLPRGKVVGISKLARVVESYARRFQVQEKMTAQIAQCIQDVLQPRGVGVVVEGAHECMTTRGIHKRGVSMVTSKMLGSFREDARTRAEFLQFIEVGGKR
>NC_003902.1|WP_011039231.1|4973009_4973453_+|MarR-family-transcriptional-regulator
MTTYLPPRAQLSAGLLVASRQWQRLADQAFGEFGLSSACTGPLLMIGRSGGGIRQVALAQQLGMEGPSLVRLLDKLCAQALVRREADSSDRRANQLWLTEAGQALVGQIEARLVALRAEVFGALSDAEVEVVLKLWGLIAEANARLP
>NC_003902.1|WP_040942423.1|4973535_4973745_+|DUF1656-domain-containing-protein
MYGEFSLYGVFVPTLLALMTLAYLLNSAVGALLTRAGAYRHIWHPALFNLALYIALLGGLFSLMRWMQS
>NC_003902.1|WP_016945064.1|4973741_4974665_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKLIKTAGPALLTLAMVVVAAVVLQHLWRYYMDAPWTRDAHVGADVVQVAPDVSGLVEQVAVADNQAVTRGQLLFVVDRARYAIALEQARAALAERQATLTQLRREIARDRSLQDLVAAEDAEVRRSNVQKAQAAVATAQSAVDLAQLNLDRTEVRSPADGHISDRTVRVGDYVSAGRPVVAVLDTGSFRVDGYFEETRLQGVHPGQRVDVHLMGEPVTLHGHVQSIAAGIEDRYRTGSAGALPNVTPAFDWVRLAQRIPVRIALDAVPAQVQLIAGRTATVTILPDAARPAAATAPARVQAKAAP
>NC_003902.1|WP_011039234.1|4974661_4976113_+|efflux-transporter-outer-membrane-subunit
MSRAALRHLGLAAALTALSACSTVGPDYALPREAVYNRPAANAPFLDTGNAQVQPGAPLPARWWALYQDPMLDGLVEQALRDNVELKVASANLRRAAAVYEQALDAGGFDYEVEAGVSRAQISAEAFLQEEKLPVFNLADGKFGVSYQFDLFGKLQHGAEAAHADTQAAQAAIDLARVSVAAQVAGSYVEICNANHELHVAEHSLQLQQRSRTVTQRLISAGRGTPPDLARATAQVAMLEAALPPLRARRQAAGYALAALLGKTPGELPAGVDSCAHAPALQQPIPIGDGRTLLARRPDVRQAERRLAAATARIGVATAELYPDIRLGGSIGATGLLADIGEPATHAWSIGPLISWTLPSSGAHARVRATEAGADAAVAQFDHTVLQALREVQTTLSRYAQDLDRLRLLEQAQQQAELASSQNRRLYQGGRTPYLSSLDAERTLATADMTLADAQAQVSKDQIQLFLALGGGWEPATDATAAR
>NC_003902.1|WP_011039235.1|4976109_4978410_+|FUSC-family-protein
MNALLRDRQAWLFSAKTFAAAIAALYVGLAGNLSRPYWAMATVYIVSQPLLGPTRAKGVYRVLGTLLAGAATLVMLPNLVETPLLLSAAMALWLSACLFLALLNRGPRGYAFLLAGYTTAFIGFPAVTAPEGIFDTVVARSEEIILGTVMAVLFAALVFPASVRPMLTARIGNWMQDAAQWCRQVLQRGPAQAPRNRLAADLVQFEALIAFVRHDDPRHAGAAPALEHLRARMLLLLPVLSSIADRLDALHAASRALPGELIALLEDIGAWVERAGPDAAQTAAEQPEMISAGDADADAAVASLRARIAALRPAVDDDLQHLLLASLLLRLEELLDLWQDCRALESALLQGTALPALPAAARDRAVPETDAGAGAEVRLRSTVPQHVGKSGGETSPGAPAHADTAPSAASSQPASLLQRLTRSSSRLSTDAPATAGDARHIDYGMAAFSALSAGFALMAYCVLWIGIDWEGGGNGAMMAAVTAAFFAAQDDPAPSMVSFLTWAVVASVVAGIYLFGIFPAIHDFPMLVLVLAAVFLPLGALLHRPKTMLIALPLVVNLTALLSLQNTYNANIQSFVNAAVAMVLGIGFAVVLTRLFRSVGAEWSARRLVRQGWRTLAAAADGRGAQDRHQFAARMLDLLGLLAPRLAVAPPGSDLASVDMLTEIRVGLNILQLRRARHGLPPASIAAVDAILADVATHYRQQVAHKRPLPGPDTLRTRLDASLARVGQVPAGTHRDEALLGLIGLRSSLFVDATVPDNATGHPQLA
>NC_003902.1|WP_011039236.1|4978763_4980125_-|MFS-transporter
MSAPPSSPIAAGSGAAPGSLRRSVSNTLKGSAGNLVEWYDVYVYSVFATYFESQFFSKEDKNATMFVWAIFAMTFLMRPIGAWYFGRFADRYGRRLALTISVSMMALCSFVIAITPTVSTIGIAAPIILLLARLLQGFATGGEYGTSATYMSEAAIPGRRGFLSSFHYVTLVGGHVLAQTTLLVMLHFFDAPQVSEWGWRVAFGLGGIGALVVFWLRQTMDESLSSESIADSRTGKAKASGSMRELFVNQWRPLLLCFLITAGGTIAFYTYSVTGPKMIQTAFAGGDVMAGTIINLVALTVLMLMQPVGGWLSDIVGRKSLLVFFGIGGVLYTWFLVMELPKQTDWLTAFAILTVGFVILTGYTSINAVVKAELFPTHVRALGVGLGYALANSAFGGTAPLLYQASLKTGHVSEFVIYATAVIAVSLVVYIFFLTNKGSNWLDHEDVMHTRKR
>NC_003902.1|WP_011039237.1|4980317_4980863_-|DUF1905-domain-containing-protein
MGTAAIRFTTTLLQPATPADATWVFLVLPANASGALPTRSMVSVRGSLAGHPLQATLQPDGQGGHWLKLDAALQRAAGVAAGDTVTLEIAPVEVEPEPVVPDDLHAALAAHPAAQATWNDITAVARRDWIFWVTSGKKAETRSKRIATACDMLGSGKRRACCFDRSGMYSKSLSAPTPKAS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_003902_1	1.20\|611912\|25\|NC_003902\|CRISPRCasFinder	611912-611936	25	NC_003902.1	612056-612080	1	0.96
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	NC_003902.1	612152-612176	2	0.92
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	NC_003902.1	612440-612464	2	0.92
NC_003902_1	1.19\|611864\|25\|NC_003902\|CRISPRCasFinder	611864-611888	25	NC_003902.1	612008-612032	2	0.92
NC_003902_1	1.20\|611912\|25\|NC_003902\|CRISPRCasFinder	611912-611936	25	NC_003902.1	612632-612656	2	0.92
NC_003902_1	1.21\|611960\|25\|NC_003902\|CRISPRCasFinder	611960-611984	25	NC_003902.1	612536-612560	2	0.92

1. spacer 1.20|611912|25|NC_003902|CRISPRCasFinder matches to position: 612056-612080, mismatch: 1, identity: 0.96

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcacgcaagggcagcgac	Protospacer
*********************.***

2. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to position: 612152-612176, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggcgacagttcg	Protospacer
******.******** *********

3. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to position: 612440-612464, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggggaaagttcg	Protospacer
******.*********** ******

4. spacer 1.19|611864|25|NC_003902|CRISPRCasFinder matches to position: 612008-612032, mismatch: 2, identity: 0.92

gcagacctcgggtagcgagagttcg	CRISPR spacer
gcagacctccggtggcgagagttcg	Protospacer
********* ***.***********

5. spacer 1.20|611912|25|NC_003902|CRISPRCasFinder matches to position: 612632-612656, mismatch: 2, identity: 0.92

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcgcgtaagggcagtgac	Protospacer
*********.**.************

6. spacer 1.21|611960|25|NC_003902|CRISPRCasFinder matches to position: 612536-612560, mismatch: 2, identity: 0.92

ctcgaccgccggtgcggacagcacc	CRISPR spacer
ctccaccgccggtgccgacagcacc	Protospacer
*** *********** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003902_1	1.1\|611000\|25\|NC_003902\|CRISPRCasFinder	611000-611024	25	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	51121-51145	3	0.88
NC_003902_1	1.2\|611048\|25\|NC_003902\|CRISPRCasFinder	611048-611072	25	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	250941-250965	3	0.88
NC_003902_1	1.2\|611048\|25\|NC_003902\|CRISPRCasFinder	611048-611072	25	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	460308-460332	3	0.88
NC_003902_1	1.2\|611048\|25\|NC_003902\|CRISPRCasFinder	611048-611072	25	NZ_CP023450	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence	132960-132984	3	0.88
NC_003902_1	1.2\|611048\|25\|NC_003902\|CRISPRCasFinder	611048-611072	25	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	175194-175218	3	0.88
NC_003902_1	1.2\|611048\|25\|NC_003902\|CRISPRCasFinder	611048-611072	25	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	41928-41952	3	0.88
NC_003902_1	1.2\|611048\|25\|NC_003902\|CRISPRCasFinder	611048-611072	25	NZ_CP041018	Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence	158454-158478	3	0.88
NC_003902_1	1.3\|611096\|25\|NC_003902\|CRISPRCasFinder	611096-611120	25	NZ_CP010990	Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence	69855-69879	3	0.88
NC_003902_1	1.3\|611096\|25\|NC_003902\|CRISPRCasFinder	611096-611120	25	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	16607-16631	3	0.88
NC_003902_1	1.8\|611336\|25\|NC_003902\|CRISPRCasFinder	611336-611360	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	378085-378109	3	0.88
NC_003902_1	1.8\|611336\|25\|NC_003902\|CRISPRCasFinder	611336-611360	25	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	143684-143708	3	0.88
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	243232-243256	3	0.88
NC_003902_1	1.14\|611624\|25\|NC_003902\|CRISPRCasFinder	611624-611648	25	NC_015851	Acidithiobacillus caldus SM-1 megaplasmid, complete sequence	152062-152086	3	0.88
NC_003902_1	1.14\|611624\|25\|NC_003902\|CRISPRCasFinder	611624-611648	25	NZ_CP026329	Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence	107106-107130	3	0.88
NC_003902_1	1.14\|611624\|25\|NC_003902\|CRISPRCasFinder	611624-611648	25	NZ_CP005987	Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence	163970-163994	3	0.88
NC_003902_1	1.15\|611672\|25\|NC_003902\|CRISPRCasFinder	611672-611696	25	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	69011-69035	3	0.88
NC_003902_1	1.15\|611672\|25\|NC_003902\|CRISPRCasFinder	611672-611696	25	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	911990-912014	3	0.88
NC_003902_1	1.18\|611816\|25\|NC_003902\|CRISPRCasFinder	611816-611840	25	NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	27409-27433	3	0.88
NC_003902_1	1.18\|611816\|25\|NC_003902\|CRISPRCasFinder	611816-611840	25	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	209397-209421	3	0.88
NC_003902_1	1.18\|611816\|25\|NC_003902\|CRISPRCasFinder	611816-611840	25	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	11418-11442	3	0.88
NC_003902_1	1.18\|611816\|25\|NC_003902\|CRISPRCasFinder	611816-611840	25	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	65195-65219	3	0.88
NC_003902_1	1.21\|611960\|25\|NC_003902\|CRISPRCasFinder	611960-611984	25	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	50549-50573	3	0.88
NC_003902_1	1.1\|611000\|25\|NC_003902\|CRISPRCasFinder	611000-611024	25	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	859763-859787	4	0.84
NC_003902_1	1.1\|611000\|25\|NC_003902\|CRISPRCasFinder	611000-611024	25	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	461680-461704	4	0.84
NC_003902_1	1.3\|611096\|25\|NC_003902\|CRISPRCasFinder	611096-611120	25	NZ_CP046256	Sphingobium sp. CAP-1 plasmid p3, complete sequence	125194-125218	4	0.84
NC_003902_1	1.3\|611096\|25\|NC_003902\|CRISPRCasFinder	611096-611120	25	NZ_CP022748	Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence	107885-107909	4	0.84
NC_003902_1	1.3\|611096\|25\|NC_003902\|CRISPRCasFinder	611096-611120	25	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	59811-59835	4	0.84
NC_003902_1	1.3\|611096\|25\|NC_003902\|CRISPRCasFinder	611096-611120	25	MN204501	Gordonia phage Chikenjars, complete genome	29380-29404	4	0.84
NC_003902_1	1.3\|611096\|25\|NC_003902\|CRISPRCasFinder	611096-611120	25	NC_048793	Gordonia phage Kenosha, complete genome	29930-29954	4	0.84
NC_003902_1	1.5\|611192\|25\|NC_003902\|CRISPRCasFinder	611192-611216	25	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	351573-351597	4	0.84
NC_003902_1	1.5\|611192\|25\|NC_003902\|CRISPRCasFinder	611192-611216	25	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	52264-52288	4	0.84
NC_003902_1	1.6\|611240\|25\|NC_003902\|CRISPRCasFinder	611240-611264	25	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	395981-396005	4	0.84
NC_003902_1	1.9\|611384\|25\|NC_003902\|CRISPRCasFinder	611384-611408	25	NC_008537	Arthrobacter sp. FB24 plasmid 1, complete sequence	94006-94030	4	0.84
NC_003902_1	1.9\|611384\|25\|NC_003902\|CRISPRCasFinder	611384-611408	25	NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	37310-37334	4	0.84
NC_003902_1	1.9\|611384\|25\|NC_003902\|CRISPRCasFinder	611384-611408	25	NC_008539	Arthrobacter sp. FB24 plasmid 3, complete sequence	33091-33115	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	68382-68406	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	186792-186816	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	315946-315970	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP029234	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence	73358-73382	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP035035	Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence	41925-41949	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1577504-1577528	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	68399-68423	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP045095	Streptomyces sp. GY16 plasmid unnamed1, complete sequence	1473-1497	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	135413-135437	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1505773-1505797	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	70068-70092	4	0.84
NC_003902_1	1.13\|611576\|25\|NC_003902\|CRISPRCasFinder	611576-611600	25	MN062720	Microbacterium phage FuzzBuster, complete genome	23698-23722	4	0.84
NC_003902_1	1.17\|611768\|25\|NC_003902\|CRISPRCasFinder	611768-611792	25	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	156372-156396	4	0.84
NC_003902_1	1.18\|611816\|25\|NC_003902\|CRISPRCasFinder	611816-611840	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5969600-5969624	4	0.84
NC_003902_1	1.18\|611816\|25\|NC_003902\|CRISPRCasFinder	611816-611840	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1420670-1420694	4	0.84
NC_003902_1	1.18\|611816\|25\|NC_003902\|CRISPRCasFinder	611816-611840	25	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	152689-152713	4	0.84
NC_003902_1	1.21\|611960\|25\|NC_003902\|CRISPRCasFinder	611960-611984	25	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	118257-118281	4	0.84
NC_003902_1	1.21\|611960\|25\|NC_003902\|CRISPRCasFinder	611960-611984	25	NZ_CP021815	Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence	49071-49095	4	0.84
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	694675-694699	5	0.8
NC_003902_1	1.11\|611480\|25\|NC_003902\|CRISPRCasFinder	611480-611504	25	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	123372-123396	5	0.8
NC_003902_1	1.14\|611624\|25\|NC_003902\|CRISPRCasFinder	611624-611648	25	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	281685-281709	5	0.8
NC_003902_1	1.14\|611624\|25\|NC_003902\|CRISPRCasFinder	611624-611648	25	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	426616-426640	5	0.8
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	40969-40993	5	0.8
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	MK882885	Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence	38468-38492	5	0.8
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	16093-16117	5	0.8
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	37490-37514	5	0.8
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	21314-21338	5	0.8
NC_003902_1	1.16\|611720\|25\|NC_003902\|CRISPRCasFinder	611720-611744	25	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	54715-54739	5	0.8
NC_003902_1	1.21\|611960\|25\|NC_003902\|CRISPRCasFinder	611960-611984	25	NZ_CP025015	Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence	297223-297247	5	0.8

1. spacer 1.1|611000|25|NC_003902|CRISPRCasFinder matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 3, identity: 0.88

gctcactggcgccgatcagagtcag	CRISPR spacer
acacacgggcgccgatcagagtcag	Protospacer
.* *** ******************

2. spacer 1.2|611048|25|NC_003902|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

3. spacer 1.2|611048|25|NC_003902|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

4. spacer 1.2|611048|25|NC_003902|CRISPRCasFinder matches to NZ_CP023450 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

5. spacer 1.2|611048|25|NC_003902|CRISPRCasFinder matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

6. spacer 1.2|611048|25|NC_003902|CRISPRCasFinder matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

7. spacer 1.2|611048|25|NC_003902|CRISPRCasFinder matches to NZ_CP041018 (Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

8. spacer 1.3|611096|25|NC_003902|CRISPRCasFinder matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatccaacggcatc	Protospacer
****************.**.***.*

9. spacer 1.3|611096|25|NC_003902|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcttggccggatccgccagcagc	Protospacer
**** ************ ***** *

10. spacer 1.8|611336|25|NC_003902|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

11. spacer 1.8|611336|25|NC_003902|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

12. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 3, identity: 0.88

gcagacggcgcaggacggcagcgac	CRISPR spacer
ggagacggtgcaggacggcagctac	Protospacer
* ******.************* **

13. spacer 1.14|611624|25|NC_003902|CRISPRCasFinder matches to NC_015851 (Acidithiobacillus caldus SM-1 megaplasmid, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

14. spacer 1.14|611624|25|NC_003902|CRISPRCasFinder matches to NZ_CP026329 (Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

15. spacer 1.14|611624|25|NC_003902|CRISPRCasFinder matches to NZ_CP005987 (Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

16. spacer 1.15|611672|25|NC_003902|CRISPRCasFinder matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 3, identity: 0.88

ctccaccgctggtgcggacagcacg	CRISPR spacer
ccccgccgctggtgcggacatcacg	Protospacer
*.**.*************** ****

17. spacer 1.15|611672|25|NC_003902|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 3, identity: 0.88

ctccaccgctggtgcggacagcacg	CRISPR spacer
cgccaccgctggggcggacagcccg	Protospacer
* ********** ********* **

18. spacer 1.18|611816|25|NC_003902|CRISPRCasFinder matches to NZ_CP047174 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggctcggacagcact	Protospacer
******** **** **********.

19. spacer 1.18|611816|25|NC_003902|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagcgac	Protospacer
******** *************. *

20. spacer 1.18|611816|25|NC_003902|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

21. spacer 1.18|611816|25|NC_003902|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

22. spacer 1.21|611960|25|NC_003902|CRISPRCasFinder matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cccgaccgccggtgcggacagccgc	Protospacer
*.********************  *

23. spacer 1.1|611000|25|NC_003902|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

24. spacer 1.1|611000|25|NC_003902|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

25. spacer 1.3|611096|25|NC_003902|CRISPRCasFinder matches to NZ_CP046256 (Sphingobium sp. CAP-1 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

26. spacer 1.3|611096|25|NC_003902|CRISPRCasFinder matches to NZ_CP022748 (Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

27. spacer 1.3|611096|25|NC_003902|CRISPRCasFinder matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

28. spacer 1.3|611096|25|NC_003902|CRISPRCasFinder matches to MN204501 (Gordonia phage Chikenjars, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcaggatccaacagcacc	Protospacer
  ******* ******.********

29. spacer 1.3|611096|25|NC_003902|CRISPRCasFinder matches to NC_048793 (Gordonia phage Kenosha, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcgggatccaacagcacc	Protospacer
  ******* ******.********

30. spacer 1.5|611192|25|NC_003902|CRISPRCasFinder matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

31. spacer 1.5|611192|25|NC_003902|CRISPRCasFinder matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

32. spacer 1.6|611240|25|NC_003902|CRISPRCasFinder matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.84

ggaaaccgccggtgcagacagctcg	CRISPR spacer
cagaaccgccggtgcagacaggtcg	Protospacer
 ..****************** ***

33. spacer 1.9|611384|25|NC_003902|CRISPRCasFinder matches to NC_008537 (Arthrobacter sp. FB24 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

34. spacer 1.9|611384|25|NC_003902|CRISPRCasFinder matches to NC_008538 (Arthrobacter sp. FB24 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

35. spacer 1.9|611384|25|NC_003902|CRISPRCasFinder matches to NC_008539 (Arthrobacter sp. FB24 plasmid 3, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

36. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

37. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgccggacggcagcgcc	Protospacer
  ********* *********** *

38. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

39. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP029234 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcaggcggcgcaggacggcaggatc	Protospacer
****.**************** . *

40. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP035035 (Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcagacggcccagcacggcagcgga	Protospacer
********* *** *********.

41. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

42. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagccggcgcaggacggcatcgac	Protospacer
  ** *************** ****

43. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP045095 (Streptomyces sp. GY16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gaggacggcgcaggacgccagcgag	Protospacer
* .************** ******

44. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

45. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

46. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

47. spacer 1.13|611576|25|NC_003902|CRISPRCasFinder matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 4, identity: 0.84

gcagacatccggcaacgacagctcg	CRISPR spacer
cgagacatccggcatcgacaggtcg	Protospacer
  ************ ****** ***

48. spacer 1.17|611768|25|NC_003902|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

ccaaaccgcgcgcaagggtagcgac	CRISPR spacer
tgaaaacgcgcgcaagggtagcgtc	Protospacer
. *** ***************** *

49. spacer 1.18|611816|25|NC_003902|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
cagcaccgccgacgcggacagcacc	Protospacer
*   *******.*************

50. spacer 1.18|611816|25|NC_003902|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagggac	Protospacer
******** ************ . *

51. spacer 1.18|611816|25|NC_003902|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctccatcgccggcgcggacagcaaa	Protospacer
*** *.*****************

52. spacer 1.21|611960|25|NC_003902|CRISPRCasFinder matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
ggcgaccgcctgtgcggccagcacc	Protospacer
  ******** ****** *******

53. spacer 1.21|611960|25|NC_003902|CRISPRCasFinder matches to NZ_CP021815 (Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cacgaccgccggtgcggacagacct	Protospacer
* *******************  *.

54. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgcgacggcgcaggacggcagcaag	Protospacer
   *******************.*

55. spacer 1.11|611480|25|NC_003902|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgct	Protospacer
  ************** ****** .

56. spacer 1.14|611624|25|NC_003902|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
aggaaccgcccgtaccggcagcccc	Protospacer
  .*******************  *

57. spacer 1.14|611624|25|NC_003902|CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ggaatccgcccgtaccggcagcgtt	Protospacer
  ** ****************** .

58. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

59. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to MK882885 (Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

60. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

61. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

62. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

63. spacer 1.16|611720|25|NC_003902|CRISPRCasFinder matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

64. spacer 1.21|611960|25|NC_003902|CRISPRCasFinder matches to NZ_CP025015 (Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence) position: , mismatch: 5, identity: 0.8

ctcgaccgccggtgcggacagcacc	CRISPR spacer
aaagaccgccggtgcggacagaact	Protospacer
   ****************** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

743624 : 750007

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011035864.1\|743624_744680_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.5e-81	47.3
WP_012439277.1\|744743_745631_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.2e-95	57.8
WP_011035866.1\|745627_746185_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-43	49.4
WP_011035867.1\|746181_747090_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.6e-29	33.6
WP_011035868.1\|747211_748615_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-47	29.9
WP_014506571.1\|748660_750007_-	phosphohexose mutase	A0A127AWJ1	Bacillus_phage	1.2e-30	26.4

DBSCAN-SWA_2

1862424 : 1898894

Leptospira_phage(50.0%)

tRNA,integrase,transposase

attL 1876501:1876524|attR 1897890:1897913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011036776.1\|1862424_1863705_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-97	55.1
WP_011036777.1\|1863982_1865002_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019237801.1\|1865347_1866814_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011036779.1\|1866900_1868187_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_138922051.1\|1868248_1868692_+	hypothetical protein	NA	NA	NA	NA
WP_011036780.1\|1868949_1870929_-	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_138922050.1\|1870910_1871441_-	hypothetical protein	NA	NA	NA	NA
WP_011036781.1\|1871437_1872652_-	hypothetical protein	NA	NA	NA	NA
WP_011036782.1\|1872891_1873251_-	hypothetical protein	NA	NA	NA	NA
WP_011036783.1\|1873268_1873583_-	hypothetical protein	NA	NA	NA	NA
WP_011036784.1\|1873628_1874426_-	hypothetical protein	NA	NA	NA	NA
WP_011036785.1\|1874501_1874843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019237766.1\|1875003_1876077_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_087942065.1\|1876373_1877481_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.9
1876501:1876524	attL	NA	NA	NA	NA
WP_019237763.1\|1877499_1878429_+	hypothetical protein	NA	NA	NA	NA
WP_011035385.1\|1878688_1879669_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.3e-98	61.0
WP_138922049.1\|1879721_1880456_-	hypothetical protein	NA	NA	NA	NA
WP_043877799.1\|1880862_1881132_+	EexN family lipoprotein	NA	NA	NA	NA
WP_011036791.1\|1881306_1882302_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_019237759.1\|1882327_1883719_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011036793.1\|1884099_1884369_+	hypothetical protein	NA	NA	NA	NA
WP_019237757.1\|1884533_1885001_+	hypothetical protein	NA	NA	NA	NA
WP_016945337.1\|1885740_1886247_+	hypothetical protein	NA	NA	NA	NA
WP_016945339.1\|1886971_1887304_+	hypothetical protein	NA	NA	NA	NA
WP_011036798.1\|1887702_1888182_+	DNA repair protein RadC	NA	NA	NA	NA
WP_011036799.1\|1888197_1888926_+	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_011036800.1\|1888977_1889457_+	hypothetical protein	NA	NA	NA	NA
WP_011036801.1\|1889519_1889879_-	hypothetical protein	NA	NA	NA	NA
WP_011036802.1\|1890007_1890607_-	hypothetical protein	NA	NA	NA	NA
WP_040942343.1\|1890634_1890916_-	hypothetical protein	NA	NA	NA	NA
WP_040941461.1\|1891428_1892088_+	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_011036804.1\|1892124_1896141_+	hypothetical protein	NA	NA	NA	NA
WP_011036805.1\|1896180_1896828_+	hypothetical protein	NA	NA	NA	NA
WP_138922048.1\|1896886_1897702_+	hypothetical protein	NA	NA	NA	NA
WP_087942919.1\|1897762_1898894_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.2e-49	41.9
1897890:1897913	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1997519 : 2007995

Micromonas_pusilla_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011036897.1\|1997519_1999196_+	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	9.3e-41	27.7
WP_011036898.1\|1999262_1999904_+	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_011036899.1\|2000076_2001108_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.6e-112	61.3
WP_011036900.1\|2001223_2001712_+	recombination regulator RecX	NA	NA	NA	NA
WP_011036901.1\|2001813_2004462_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.4e-83	39.8
WP_011036902.1\|2004603_2004816_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	1.5e-12	65.5
WP_011036903.1\|2006030_2007995_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-12	43.6

DBSCAN-SWA_4

2419069 : 2489455

Xanthomonas_phage(66.67%)

transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942925.1\|2419069_2419868_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_043877759.1\|2420098_2421490_-	alginate export family protein	NA	NA	NA	NA
WP_011037214.1\|2421496_2422387_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_011037215.1\|2422685_2422994_-	XapX domain-containing protein	NA	NA	NA	NA
WP_011037216.1\|2423659_2424028_-	response regulator	NA	NA	NA	NA
WP_011037217.1\|2424111_2425428_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_011037218.1\|2425758_2434416_+	cyclic beta 1-2 glucan synthetase	NA	NA	NA	NA
WP_011037219.1\|2434412_2434697_+	hypothetical protein	NA	NA	NA	NA
WP_014507805.1\|2434863_2435172_-	hypothetical protein	NA	NA	NA	NA
WP_165442008.1\|2436207_2436375_+	hypothetical protein	A0A077JGB8	Xanthomonas_phage	5.1e-08	62.7
WP_029628957.1\|2436466_2437408_+	replication initiation protein	A0A077JDC0	Xanthomonas_phage	1.9e-176	96.5
WP_011037222.1\|2437404_2437701_+	G5P family DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	2.1e-44	90.7
WP_019237633.1\|2437704_2437956_+	hypothetical protein	NA	NA	NA	NA
WP_005918131.1\|2437983_2438112_+\|coat	Phi-Lf prophage-derived major coat protein	NA	NA	NA	NA
WP_164923334.1\|2438719_2439067_+	hypothetical protein	NA	NA	NA	NA
WP_019237631.1\|2439060_2439300_+	hypothetical protein	Q9XJ91	Xanthomonas_phage	9.1e-35	92.4
WP_011037230.1\|2439310_2439631_+\|coat	minor coat protein	Q4LAU3	Stenotrophomonas_phage	5.0e-20	44.2
WP_011037227.1\|2439632_2440955_+	zonular occludens toxin domain-containing protein	Q4LAU4	Stenotrophomonas_phage	5.3e-132	56.0
WP_075272161.1\|2440974_2441283_-	chloride channel protein	A0A1W6DXV7	Xanthomonas_phage	1.0e-46	90.3
WP_011037228.1\|2441349_2441676_-	hypothetical protein	Q38057	Xanthomonas_phage	3.9e-20	60.8
WP_011037229.1\|2441849_2442188_+	hypothetical protein	Q38057	Xanthomonas_phage	4.7e-61	100.0
WP_075272161.1\|2442254_2442563_+	chloride channel protein	A0A1W6DXV7	Xanthomonas_phage	1.0e-46	90.3
WP_011037227.1\|2442582_2443905_-	zonular occludens toxin domain-containing protein	Q4LAU4	Stenotrophomonas_phage	5.3e-132	56.0
WP_011037230.1\|2443906_2444227_-\|coat	minor coat protein	Q4LAU3	Stenotrophomonas_phage	5.0e-20	44.2
WP_019237631.1\|2444237_2444477_-	hypothetical protein	Q9XJ91	Xanthomonas_phage	9.1e-35	92.4
WP_164923334.1\|2444470_2444818_-	hypothetical protein	NA	NA	NA	NA
WP_005918131.1\|2445425_2445554_-\|coat	Phi-Lf prophage-derived major coat protein	NA	NA	NA	NA
WP_019237633.1\|2445581_2445833_-	hypothetical protein	NA	NA	NA	NA
WP_011037222.1\|2445836_2446133_-	G5P family DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	2.1e-44	90.7
WP_043877755.1\|2446129_2447071_-	replication initiation protein	A0A077JDC0	Xanthomonas_phage	8.5e-177	96.8
WP_011037232.1\|2447455_2447920_+	DUF3693 domain-containing protein	NA	NA	NA	NA
WP_011037233.1\|2447868_2448519_-	conjugal transfer protein TrbP	A0A077JBM8	Xanthomonas_phage	8.8e-48	48.1
WP_164923335.1\|2448647_2450441_-	transmembrane repetitive protein	NA	NA	NA	NA
WP_011037235.1\|2450454_2451054_-	NfuA family Fe-S biogenesis protein	NA	NA	NA	NA
WP_011037236.1\|2451146_2451503_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_011037237.1\|2451499_2451922_+	energy transducer TonB	NA	NA	NA	NA
WP_011037238.1\|2452049_2452868_+	zinc transporter ZupT	NA	NA	NA	NA
WP_011037239.1\|2453254_2454238_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_011037240.1\|2454641_2458205_+	ribonuclease E	NA	NA	NA	NA
WP_011269749.1\|2458286_2458496_-	hypothetical protein	NA	NA	NA	NA
WP_011037241.1\|2458772_2459420_-	response regulator	NA	NA	NA	NA
WP_011037242.1\|2459635_2460397_-	sulfurtransferase	NA	NA	NA	NA
WP_011037243.1\|2460430_2460796_-	hypothetical protein	NA	NA	NA	NA
WP_014507823.1\|2460856_2461288_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_011037245.1\|2461299_2462553_+	TIGR03862 family flavoprotein	NA	NA	NA	NA
WP_011037246.1\|2462536_2463829_-	nucleotide sugar dehydrogenase	M1HEP0	Acanthocystis_turfacea_Chlorella_virus	1.4e-23	29.9
WP_011037247.1\|2464067_2465480_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_011037248.1\|2466219_2466495_-	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_011269748.1\|2467157_2467604_+	avidin/streptavidin family protein	NA	NA	NA	NA
WP_011037249.1\|2467750_2469457_+	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA
WP_019237643.1\|2469897_2476536_+	DUF3320 domain-containing protein	NA	NA	NA	NA
WP_164517437.1\|2476571_2478239_+	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
WP_074038421.1\|2480489_2481137_+	hypothetical protein	NA	NA	NA	NA
WP_011037255.1\|2481227_2482565_+	avirulence protein	NA	NA	NA	NA
WP_011037256.1\|2482803_2483769_-	hypothetical protein	NA	NA	NA	NA
WP_011037257.1\|2483855_2485037_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_011037258.1\|2485029_2487129_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_011035783.1\|2488087_2489455_-\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6

DBSCAN-SWA_5

3479550 : 3577811

106

Stenotrophomonas_phage(45.45%)

terminase,integrase,plate,holin,capsid,head,tail,tRNA,portal

attL 3530234:3530254|attR 3577732:3577752

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011038052.1\|3479550_3480270_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_011038053.1\|3480745_3482752_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	5.6e-93	33.2
WP_011038054.1\|3483256_3483781_-	hypothetical protein	NA	NA	NA	NA
WP_011038055.1\|3483793_3486238_-	penicillin-binding protein 1B	NA	NA	NA	NA
WP_019237395.1\|3486333_3488436_+	glycosyltransferase	NA	NA	NA	NA
WP_016945254.1\|3490113_3492273_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA
WP_002812057.1\|3492578_3492659_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA
WP_011038060.1\|3492725_3493625_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA
WP_011038061.1\|3493621_3494374_+	pyrroloquinoline-quinone synthase PqqC	NA	NA	NA	NA
WP_011038062.1\|3494370_3494649_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA
WP_011038063.1\|3494645_3495776_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA
WP_011038064.1\|3495836_3496349_+	hypothetical protein	NA	NA	NA	NA
WP_011038065.1\|3496611_3498099_+	hypothetical protein	NA	NA	NA	NA
WP_011038066.1\|3498441_3499476_+	glucokinase	NA	NA	NA	NA
WP_011038067.1\|3499582_3502219_+	TonB-dependent receptor	NA	NA	NA	NA
WP_011038068.1\|3502470_3506586_-	ATP-dependent RNA helicase HrpA	A0A1V0SDF7	Indivirus	1.2e-49	28.8
WP_011038069.1\|3506673_3507225_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	8.9e-17	32.4
WP_011038070.1\|3507579_3509382_+	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	4.4e-81	35.3
WP_011038071.1\|3509521_3510004_+	hypothetical protein	NA	NA	NA	NA
WP_011038072.1\|3510082_3510487_+	response regulator	NA	NA	NA	NA
WP_011038074.1\|3511934_3512645_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_016945258.1\|3512829_3513036_+	hypothetical protein	NA	NA	NA	NA
WP_011269572.1\|3513623_3513971_+	hypothetical protein	NA	NA	NA	NA
WP_011038076.1\|3514133_3514559_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011038077.1\|3514724_3515351_-	amino acid transporter	NA	NA	NA	NA
WP_011038078.1\|3515458_3516376_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_165442012.1\|3516448_3518188_-	chloride channel protein	NA	NA	NA	NA
WP_011269569.1\|3518817_3520071_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011038081.1\|3520206_3520557_-	response regulator	NA	NA	NA	NA
WP_029628883.1\|3520553_3521561_-	PAS domain-containing protein	NA	NA	NA	NA
WP_011269567.1\|3521967_3522207_+	hypothetical protein	NA	NA	NA	NA
WP_158011231.1\|3522396_3522714_+	hypothetical protein	NA	NA	NA	NA
WP_011038084.1\|3522602_3523028_+	hypothetical protein	NA	NA	NA	NA
WP_011038085.1\|3523233_3523569_-	hypothetical protein	NA	NA	NA	NA
WP_011038086.1\|3523919_3524399_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	1.0e-13	38.7
WP_011038087.1\|3524398_3525685_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.0e-84	42.7
WP_011038088.1\|3526403_3527630_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_011038089.1\|3527629_3528097_+	DUF4411 family protein	NA	NA	NA	NA
WP_011038090.1\|3528128_3528833_-	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	2.1e-111	78.6
WP_010364016.1\|3528750_3528996_-	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	1.8e-14	52.5
WP_011038091.1\|3529021_3530053_-\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	5.4e-140	73.0
WP_011038092.1\|3530052_3531837_-\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	4.3e-270	76.1
3530234:3530254	attL	NA	NA	NA	NA
WP_011038093.1\|3531958_3532801_+\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.2e-68	54.0
WP_011038094.1\|3532849_3533866_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	8.4e-138	71.1
WP_011038095.1\|3533869_3534589_+\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	7.7e-69	62.8
WP_011038096.1\|3534687_3535155_+\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	2.7e-30	49.0
WP_005917735.1\|3535154_3535364_+\|tail	tail protein X	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_005929454.1\|3535368_3535725_+	membrane protein	V9IQG9	Stenotrophomonas_phage	3.5e-22	56.1
WP_005922189.1\|3535717_3535993_+\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
WP_164923337.1\|3535992_3536631_+	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	1.6e-49	61.5
WP_011038098.1\|3536630_3537119_+	hypothetical protein	A0A077K9R7	Ralstonia_phage	9.9e-28	51.0
WP_011038099.1\|3537115_3537535_+\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.7e-39	65.2
WP_011038100.1\|3537522_3537981_+	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	4.9e-37	56.1
WP_164923338.1\|3538020_3538233_+	hypothetical protein	NA	NA	NA	NA
WP_164923339.1\|3538267_3538954_+	hypothetical protein	NA	NA	NA	NA
WP_011038101.1\|3539111_3540002_+\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	6.8e-83	53.0
WP_011038102.1\|3539994_3540543_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	2.7e-50	53.1
WP_011038103.1\|3540546_3541752_+\|tail	tail protein	E5FFH1	Burkholderia_phage	2.1e-31	41.6
WP_164923340.1\|3541753_3541981_+	hypothetical protein	NA	NA	NA	NA
WP_011038105.1\|3542059_3542623_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	1.1e-25	45.9
WP_011038106.1\|3542619_3542979_+	GPW/gp25 family protein	V9IQW0	Stenotrophomonas_phage	1.9e-36	64.4
WP_011038107.1\|3542990_3544157_+\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	6.5e-134	63.9
WP_011038108.1\|3544187_3544697_+\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	4.9e-70	76.9
WP_011038109.1\|3544742_3545045_+\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	3.7e-25	67.4
WP_005922203.1\|3545053_3545167_+\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_011038110.1\|3545196_3548067_+\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	3.3e-203	53.5
WP_011038111.1\|3548079_3548481_+\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	5.1e-38	59.8
WP_011038112.1\|3548477_3549464_+	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	3.0e-92	54.8
WP_164923341.1\|3549549_3550698_+	hypothetical protein	NA	NA	NA	NA
WP_157382238.1\|3550678_3551002_+	DUF4325 domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	1.7e-07	32.0
WP_164923342.1\|3551081_3551471_+	hypothetical protein	NA	NA	NA	NA
WP_011038115.1\|3551777_3552206_-	helix-turn-helix transcriptional regulator	A4JWR8	Burkholderia_virus	1.4e-17	42.8
WP_011038116.1\|3552272_3552527_+	DNA-binding protein	A0A1B0VRL1	Pseudomonas_phage	1.7e-07	46.7
WP_074056808.1\|3552533_3552845_+	ogr/Delta-like zinc finger family protein	V9IQW3	Stenotrophomonas_phage	8.5e-25	56.0
WP_164923343.1\|3552867_3553149_+	hypothetical protein	NA	NA	NA	NA
WP_011038118.1\|3553145_3553385_+	hypothetical protein	NA	NA	NA	NA
WP_164923344.1\|3553388_3556076_+	toprim domain-containing protein	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.9
WP_104533278.1\|3556387_3556606_+	hypothetical protein	NA	NA	NA	NA
WP_164923345.1\|3556602_3556881_+	hypothetical protein	NA	NA	NA	NA
WP_011038121.1\|3556877_3557141_+	hypothetical protein	NA	NA	NA	NA
WP_011038122.1\|3557219_3557630_+	hypothetical protein	NA	NA	NA	NA
WP_165442010.1\|3557622_3557799_+	hypothetical protein	NA	NA	NA	NA
WP_164923360.1\|3557821_3558067_+	hypothetical protein	NA	NA	NA	NA
WP_104600173.1\|3558063_3558309_+	hypothetical protein	NA	NA	NA	NA
WP_164923346.1\|3558305_3558578_+	hypothetical protein	NA	NA	NA	NA
WP_011038127.1\|3558574_3558781_+	hypothetical protein	NA	NA	NA	NA
WP_016851175.1\|3558777_3558999_+	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.4e-18	58.3
WP_011038129.1\|3558998_3560198_+\|integrase	tyrosine-type recombinase/integrase	V9IQN0	Stenotrophomonas_phage	2.3e-118	53.5
WP_011038130.1\|3560465_3561140_-	7-cyano-7-deazaguanine synthase QueC	A0A088F6S9	Vibrio_phage	1.9e-24	34.2
WP_011038131.1\|3561336_3562020_-	7-carboxy-7-deazaguanine synthase QueE	J9PV61	Bacillus_phage	6.4e-41	42.4
WP_011038132.1\|3562064_3562883_-	tol-pal system protein YbgF	NA	NA	NA	NA
WP_011038133.1\|3562889_3563408_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_011038134.1\|3563465_3564785_-	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA
WP_011038135.1\|3565049_3566087_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_011038136.1\|3566076_3566526_-	protein TolR	NA	NA	NA	NA
WP_011038137.1\|3566617_3567397_-	protein TolQ	NA	NA	NA	NA
WP_011038138.1\|3567408_3567867_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_011038139.1\|3567919_3568960_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.1e-06	28.2
WP_057671711.1\|3568999_3570121_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_011038140.1\|3570123_3572031_-	potassium transporter Kup	A7J6G4	Paramecium_bursaria_Chlorella_virus	2.8e-78	31.8
WP_006450983.1\|3572230_3572815_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_011038141.1\|3572927_3573452_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_011038142.1\|3573581_3574310_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012437666.1\|3574385_3575045_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011038144.1\|3575169_3575697_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011038145.1\|3576044_3577811_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
3577732:3577752	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3687911 : 3728341

Leptospira_phage(42.86%)

integrase,transposase

attL 3705738:3705753|attR 3731586:3731601

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942071.1\|3687911_3689055_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.8e-88	58.8
WP_011038228.1\|3689148_3690087_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_029628874.1\|3690097_3691498_+	integrating conjugative element protein	NA	NA	NA	NA
WP_011269554.1\|3691494_3691842_+	hypothetical protein	NA	NA	NA	NA
WP_029628873.1\|3691857_3693381_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_029628872.1\|3693392_3693752_-	DUF3742 family protein	NA	NA	NA	NA
WP_011038231.1\|3693976_3694735_+	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA
WP_011038232.1\|3694727_3695654_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_019237341.1\|3695809_3696100_-	hypothetical protein	NA	NA	NA	NA
WP_011038233.1\|3696203_3697229_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	5.3e-23	34.8
WP_011035783.1\|3698991_3700359_-\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6
WP_087942070.1\|3700519_3701627_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-43	38.3
WP_011038238.1\|3702797_3703457_-	hypothetical protein	NA	NA	NA	NA
WP_011038239.1\|3703453_3703984_-	hypothetical protein	NA	NA	NA	NA
WP_011038240.1\|3704381_3704930_-	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_011038241.1\|3704998_3706138_-	type IV secretion system protein	NA	NA	NA	NA
3705738:3705753	attL	NA	NA	NA	NA
WP_016848927.1\|3706169_3706817_-	hypothetical protein	NA	NA	NA	NA
WP_011038243.1\|3707838_3709377_-	MASE1 domain-containing protein	NA	NA	NA	NA
WP_011038245.1\|3710566_3713830_+	DNA helicase	NA	NA	NA	NA
WP_087942070.1\|3714645_3715754_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-43	38.3
WP_100101058.1\|3716230_3717332_+\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	4.5e-44	41.9
WP_075287146.1\|3718015_3722041_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011038250.1\|3722793_3723678_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019237334.1\|3723705_3723966_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011038252.1\|3724101_3724752_+	hypothetical protein	NA	NA	NA	NA
WP_011038253.1\|3724822_3725824_-	hypothetical protein	NA	NA	NA	NA
WP_019237332.1\|3725856_3726276_-	hypothetical protein	NA	NA	NA	NA
WP_019237331.1\|3726460_3728341_-\|integrase	tyrosine-type recombinase/integrase	A0A0U1UNT3	Pseudomonas_phage	7.3e-103	51.1
3731586:3731601	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4124552 : 4163743

Shigella_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138922025.1\|4124552_4125655_-\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	1.3e-43	41.4
WP_011038563.1\|4126813_4127932_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_011038564.1\|4127928_4129989_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_011038565.1\|4129992_4130478_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_011038566.1\|4130474_4131824_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003482734.1\|4132156_4133203_-	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	2.7e-06	21.2
WP_011038567.1\|4133479_4134412_+	carbohydrate kinase family protein	NA	NA	NA	NA
WP_019237253.1\|4135091_4137065_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_087942922.1\|4137458_4138256_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_011038570.1\|4138558_4140943_-	TonB-dependent receptor	NA	NA	NA	NA
WP_011038571.1\|4140953_4142060_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	9.2e-29	28.5
WP_011038572.1\|4142094_4143141_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_029628851.1\|4143137_4143779_-	c-type cytochrome	NA	NA	NA	NA
WP_011038574.1\|4143804_4145559_-	quinoprotein dehydrogenase-associated putative ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_087942063.1\|4145885_4147030_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-88	58.8
WP_014509025.1\|4149649_4150273_-	HAD family hydrolase	NA	NA	NA	NA
WP_011038578.1\|4150276_4150996_-	hypothetical protein	NA	NA	NA	NA
WP_019237247.1\|4151621_4153601_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_012437339.1\|4153645_4154536_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_014509029.1\|4154726_4155488_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_011038582.1\|4155575_4157225_+	MFS transporter	NA	NA	NA	NA
WP_011038583.1\|4157221_4158313_+	HlyD family secretion protein	NA	NA	NA	NA
WP_011038584.1\|4158338_4158839_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011038585.1\|4158835_4159291_+	nucleoside deaminase	NA	NA	NA	NA
WP_011038586.1\|4159509_4159809_+	hypothetical protein	NA	NA	NA	NA
WP_011038587.1\|4160066_4161434_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	3.6e-43	29.8
WP_011038588.1\|4161552_4162104_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_087942080.1\|4162599_4163743_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-88	58.8

DBSCAN-SWA_8

4245224 : 4267707

Leptospira_phage(60.0%)

transposase,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011038650.1\|4245224_4246166_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_019237241.1\|4246446_4246908_+	DUF4126 family protein	NA	NA	NA	NA
WP_012437278.1\|4247073_4247466_-	VOC family protein	NA	NA	NA	NA
WP_011038653.1\|4247559_4248531_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_011038654.1\|4248684_4249956_-	hypothetical protein	NA	NA	NA	NA
WP_011038655.1\|4250239_4251826_+	SDR family oxidoreductase	A0A167RQ01	Powai_lake_megavirus	3.6e-34	28.6
WP_011269492.1\|4251967_4252381_-	hypothetical protein	NA	NA	NA	NA
WP_011038656.1\|4252545_4253100_-	hypothetical protein	NA	NA	NA	NA
WP_019237244.1\|4253362_4254136_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_011038658.1\|4254329_4254743_+	GFA family protein	NA	NA	NA	NA
WP_129588839.1\|4254932_4255169_-	hypothetical protein	NA	NA	NA	NA
WP_011038659.1\|4255395_4256487_-	hypothetical protein	NA	NA	NA	NA
WP_011038660.1\|4256584_4257184_-	hypothetical protein	NA	NA	NA	NA
WP_012437268.1\|4257349_4257748_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_012437267.1\|4257744_4258017_-	hypothetical protein	NA	NA	NA	NA
WP_011035386.1\|4258231_4259446_-\|transposase	IS4-like element IS1481A family transposase	A0A0F7LAS3	uncultured_marine_virus	2.7e-50	31.5
WP_087942065.1\|4259720_4260828_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.9
WP_011038664.1\|4260785_4261196_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_154727182.1\|4261360_4262242_-	hypothetical protein	NA	NA	NA	NA
WP_100101058.1\|4262586_4263688_+\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	4.5e-44	41.9
WP_011038665.1\|4263774_4265055_+	restriction endonuclease	NA	NA	NA	NA
WP_087942920.1\|4266574_4267707_-\|transposase	IS3-like element ISXca1 family transposase	S5WIU1	Leptospira_phage	3.7e-49	42.8

DBSCAN-SWA_9

4934943 : 5024085

Bacillus_phage(11.76%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942071.1\|4934943_4936087_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.8e-88	58.8
WP_138922064.1\|4936043_4938116_-	N-6 DNA methylase	A0A142K7G3	Mycobacterium_phage	3.8e-36	28.3
WP_011039212.1\|4938512_4939142_+	thymidine kinase	A0A023W530	Serratia_phage	4.0e-53	54.5
WP_011039213.1\|4939478_4940726_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_011039214.1\|4940753_4942355_-	glucan biosynthesis protein D	NA	NA	NA	NA
WP_011039215.1\|4942427_4943546_-	DUF4380 domain-containing protein	NA	NA	NA	NA
WP_011039216.1\|4944182_4944998_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	2.8e-19	26.5
WP_011039217.1\|4951500_4952685_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_011039218.1\|4952996_4954901_-	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	1.1e-18	31.6
WP_012439682.1\|4954897_4955491_-	biliverdin-producing heme oxygenase	NA	NA	NA	NA
WP_011039220.1\|4955586_4956849_-	tetracycline resistance MFS efflux pump	NA	NA	NA	NA
WP_011039221.1\|4957403_4959563_-	lytic murein transglycosylase	NA	NA	NA	NA
WP_011039222.1\|4959750_4959960_-	hypothetical protein	NA	NA	NA	NA
WP_011039223.1\|4960202_4960592_-	YchJ family protein	NA	NA	NA	NA
WP_011039225.1\|4961597_4962413_+	TSUP family transporter	NA	NA	NA	NA
WP_011270106.1\|4962456_4964517_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_011039227.1\|4964958_4968975_-	ATP-binding protein	NA	NA	NA	NA
WP_019238148.1\|4969380_4969527_-	hypothetical protein	NA	NA	NA	NA
WP_011039228.1\|4970090_4970798_-	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_011039229.1\|4970784_4972254_-	DUF3375 domain-containing protein	NA	NA	NA	NA
WP_016945065.1\|4972273_4972876_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	6.2e-48	49.5
WP_011039231.1\|4973009_4973453_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_040942423.1\|4973535_4973745_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_016945064.1\|4973741_4974665_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011039234.1\|4974661_4976113_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_011039235.1\|4976109_4978410_+	FUSC family protein	NA	NA	NA	NA
WP_011039236.1\|4978763_4980125_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.9e-31	26.7
WP_011039237.1\|4980317_4980863_-	DUF1905 domain-containing protein	NA	NA	NA	NA
WP_019238146.1\|4980973_4981876_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014509612.1\|4981976_4982816_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_043877851.1\|4982959_4984225_+	cardiolipin synthase B	NA	NA	NA	NA
WP_011039241.1\|4984256_4984772_-	hypothetical protein	NA	NA	NA	NA
WP_014509615.1\|4985030_4985237_+	hypothetical protein	NA	NA	NA	NA
WP_012439694.1\|4985223_4986339_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_019238144.1\|4986967_4988587_+	enterochelin esterase	NA	NA	NA	NA
WP_016945062.1\|4989152_4989554_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_164923354.1\|4989869_4990325_+	hypothetical protein	NA	NA	NA	NA
WP_011039247.1\|4990437_4991313_+	hypothetical protein	NA	NA	NA	NA
WP_011039250.1\|4992295_4993810_-	hypothetical protein	NA	NA	NA	NA
WP_011270109.1\|4994899_4995112_-	hypothetical protein	NA	NA	NA	NA
WP_012439699.1\|4995134_4995464_-	hypothetical protein	NA	NA	NA	NA
WP_016945057.1\|4995575_4995821_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011039253.1\|4995845_4996742_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_019238140.1\|4997102_4997939_+	restriction endonuclease	NA	NA	NA	NA
WP_011035386.1\|4998068_4999283_+\|transposase	IS4-like element IS1481A family transposase	A0A0F7LAS3	uncultured_marine_virus	2.7e-50	31.5
WP_011039254.1\|4999654_5000674_+	ParA family protein	Q7M293	Enterobacteria_phage	1.2e-19	27.5
WP_011035783.1\|5001344_5002712_-\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6
WP_011039255.1\|5003302_5004652_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_011039256.1\|5004666_5005224_-	hypothetical protein	NA	NA	NA	NA
WP_011039257.1\|5005488_5005821_+	hypothetical protein	NA	NA	NA	NA
WP_011039258.1\|5006353_5006644_-	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	3.1e-05	37.5
WP_011039259.1\|5006812_5009050_-	exodeoxyribonuclease V subunit alpha	A0A0K2FLP8	Brevibacillus_phage	1.9e-09	21.5
WP_011039260.1\|5009046_5013165_-	exodeoxyribonuclease V subunit beta	S5MMD7	Bacillus_phage	3.9e-08	21.6
WP_011039261.1\|5013161_5016566_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_019237025.1\|5016861_5022081_-	putative Ig domain-containing protein	A0A160DDD4	Gordonia_phage	2.8e-11	50.0
WP_011039263.1\|5022337_5022883_+\|tail	phage tail protein	A0A222ZFV4	Arthrobacter_phage	2.5e-11	32.8
WP_011039264.1\|5022957_5023485_+\|tail	phage tail protein	C4MYW8	Escherichia_phage	2.6e-05	48.1
WP_011039265.1\|5023545_5024085_+\|tail	phage tail protein	A0A0U4K7C7	Arthrobacter_phage	9.0e-14	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003902

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection