CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_004116	Streptococcus agalactiae 2603V/R, complete sequence	1 crisprs	cas3,DinG,RT,cas9,cas1,cas2,csn2,csm6,csa3,DEDDh	1	16	8	1

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CRISPR-Cas detection and classification

Crispr_ID: NC_004116_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004116_1

908164-909849

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT

25 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_004116_1

>merge|NC_004116|1|908164-909849|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAATTGCCAATGCTTACAATATCTTCGTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGTTCTGAATTACCTTTCTCGACACTCCGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACCATCAAGGCTCTTATCTGCAGATTGTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATGGTTGCCAATGACTTTCTAGAGTGATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAAAATCTTTTGTTGCTCCTGGACGTATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGTAAGGTATTGTAAAACTTCTTCTTGCGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACTGTTCCTATAATTAAAATAAAAGAGGTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGTTCCAGTAAAAAGTAATTTTAAAGCATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGCTCGATTGATGCTATCAACTATATTGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTCTTCAAGAGAACTTGTAGAACAGCTTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGGTACTTTTAGCTTGTTCTTGTGGTGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACACAGCTACTGTAAATTCTGCTTTTACGGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAGTGCAGTTGTCAAGGAGATTGTGAGCGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTAACCTTTGAAAATGTGAAAGGCTCGTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGCGATGATGGTAAGTCATCATGGACAGCGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTACACACGATGTCAGATATAATGTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGTACTGCACTAGGAATTGTAGAGATCAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGTACCATCTATCAATTTACCGCAAGCTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAAAAGATTTAAACTATCAAGCGTCAATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTCTAAATGCTGGTGACTGCTTTGCATAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTGCTGCTAGACCCAAACAGTTTATTTTTAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCTTTTTTAGATAATGTGCGATCACGGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTTACCAATGCTTCCATATCGCTTATATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTTATACATTTACTAATCCATCAGCATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

>NC_004116|1|1|908164-909717|PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAATTGCCAATGCTTACAATATCTTCGTCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATGTTCTGAATTACCTTTCTCGACACTCCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACCATCAAGGCTCTTATCTGCAGATTGTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATGGTTGCCAATGACTTTCTAGAGTGAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAAAATCTTTTGTTGCTCCTGGACGTATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATGTAAGGTATTGTAAAACTTCTTCTTGCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACTGTTCCTATAATTAAAATAAAAGAGGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGTTCCAGTAAAAAGTAATTTTAAAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGCTCGATTGATGCTATCAACTATATTGAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTTCAAGAGAACTTGTAGAACAGCTTCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGGTACTTTTAGCTTGTTCTTGTGGTGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAGCTACTGTAAATTCTGCTTTTACGGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAGTGCAGTTGTCAAGGAGATTGTGAGCGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTAACCTTTGAAAATGTGAAAGGCTCGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GCGATGATGGTAAGTCATCATGGACAGCGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACACACGATGTCAGATATAATGTCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGTACTGCACTAGGAATTGTAGAGATCAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGTACCATCTATCAATTTACCGCAAGCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTAAATGCTGGTGACTGCTTTGCATAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTGCTGCTAGACCCAAACAGTTTATTTTTAG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCCTTTTTTAGATAATGTGCGATCACGGAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACCAATGCTTCCATATCGCTTATAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NC_004116|1|1|908164-909783|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAATTGCCAATGCTTACAATATCTTCGTCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATGTTCTGAATTACCTTTCTCGACACTCCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACCATCAAGGCTCTTATCTGCAGATTGTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATGGTTGCCAATGACTTTCTAGAGTGAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAAAATCTTTTGTTGCTCCTGGACGTATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATGTAAGGTATTGTAAAACTTCTTCTTGCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACTGTTCCTATAATTAAAATAAAAGAGGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGTTCCAGTAAAAAGTAATTTTAAAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGCTCGATTGATGCTATCAACTATATTGAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTTCAAGAGAACTTGTAGAACAGCTTCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGGTACTTTTAGCTTGTTCTTGTGGTGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAGCTACTGTAAATTCTGCTTTTACGGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAGTGCAGTTGTCAAGGAGATTGTGAGCGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTAACCTTTGAAAATGTGAAAGGCTCGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GCGATGATGGTAAGTCATCATGGACAGCGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACACACGATGTCAGATATAATGTCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGTACTGCACTAGGAATTGTAGAGATCAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGTACCATCTATCAATTTACCGCAAGCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTAAATGCTGGTGACTGCTTTGCATAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTGCTGCTAGACCCAAACAGTTTATTTTTAG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCCTTTTTTAGATAATGTGCGATCACGGAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACCAATGCTTCCATATCGCTTATAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NC_004116|1|1|908164-909849|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAATTGCCAATGCTTACAATATCTTCGTCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATGTTCTGAATTACCTTTCTCGACACTCCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACCATCAAGGCTCTTATCTGCAGATTGTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATGGTTGCCAATGACTTTCTAGAGTGAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAAAATCTTTTGTTGCTCCTGGACGTATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATGTAAGGTATTGTAAAACTTCTTCTTGCG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACTGTTCCTATAATTAAAATAAAAGAGGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGTTCCAGTAAAAAGTAATTTTAAAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGCTCGATTGATGCTATCAACTATATTGAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTTCAAGAGAACTTGTAGAACAGCTTCA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGGTACTTTTAGCTTGTTCTTGTGGTGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ACAGCTACTGTAAATTCTGCTTTTACGGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAGTGCAGTTGTCAAGGAGATTGTGAGCGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTAACCTTTGAAAATGTGAAAGGCTCGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	GCGATGATGGTAAGTCATCATGGACAGCGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACACACGATGTCAGATATAATGTCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGTACTGCACTAGGAATTGTAGAGATCAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGTACCATCTATCAATTTACCGCAAGCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTAAAAGATTTAAACTATCAAGCGTCAATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTCTAAATGCTGGTGACTGCTTTGCATAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTGCTGCTAGACCCAAACAGTTTATTTTTAG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TCCTTTTTTAGATAATGTGCGATCACGGAC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTTACCAATGCTTCCATATCGCTTATAT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGCTAATTCTCATCTCACCGAGATGGATA
GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_004116.1\|WP_000929489.1\|906203_907073_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_004116.1\|WP_000438314.1\|910406_910823_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NC_004116.1\|WP_000914664.1\|898413_899544_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NC_004116.1\|WP_000180005.1\|915770_916430_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NC_004116.1\|WP_001019133.1\|910958_912791_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_004116.1\|WP_000146565.1\|921504_922143_-\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NC_004116.1\|WP_000678300.1\|913037_915671_+\|pneumococcal-type-histidine-triad-protein	unknown	unknown	gnl\|CDD\|380193
NC_004116.1\|WP_000168898.1\|917488_920281_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NC_004116.1\|WP_000323544.1\|900285_901056_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NC_004116.1\|WP_000523795.1\|899547_900285_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NC_004116.1\|WP_001056394.1\|922853_923465_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_004116.1\|WP_000159234.1\|897545_897917_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NC_004116.1\|WP_000590705.1\|907397_908063_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NC_004116.1\|WP_000665410.1\|916902_917337_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NC_004116.1\|WP_000653357.1\|901045_901702_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NC_004116.1\|WP_001241816.1\|897941_898322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NC_004116.1\|WP_000122194.1\|907069_907411_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_004116.1\|WP_000065321.1\|920280_921384_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NC_004116.1\|WP_000621142.1\|916438_916903_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_004116.1\|WP_001040087.1\|902089_906202_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840

Protein	Function_ID	Function_description	E-value
NC_004116.1\|WP_000929489.1\|906203_907073_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NC_004116.1\|WP_000438314.1\|910406_910823_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NC_004116.1\|WP_000914664.1\|898413_899544_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NC_004116.1\|WP_000180005.1\|915770_916430_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	5.44358e-33
NC_004116.1\|WP_001019133.1\|910958_912791_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_004116.1\|WP_000146565.1\|921504_922143_-\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	6.8383e-72
NC_004116.1\|WP_000678300.1\|913037_915671_+\|pneumococcal-type-histidine-triad-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	1.69351e-21
NC_004116.1\|WP_000168898.1\|917488_920281_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_004116.1\|WP_000323544.1\|900285_901056_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NC_004116.1\|WP_000523795.1\|899547_900285_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NC_004116.1\|WP_001056394.1\|922853_923465_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
NC_004116.1\|WP_000159234.1\|897545_897917_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NC_004116.1\|WP_000590705.1\|907397_908063_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	4.28312e-121
NC_004116.1\|WP_000665410.1\|916902_917337_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NC_004116.1\|WP_000653357.1\|901045_901702_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NC_004116.1\|WP_001241816.1\|897941_898322_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NC_004116.1\|WP_000122194.1\|907069_907411_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NC_004116.1\|WP_000065321.1\|920280_921384_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
NC_004116.1\|WP_000621142.1\|916438_916903_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
NC_004116.1\|WP_001040087.1\|902089_906202_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0

>NC_004116.1|WP_000590705.1|907397_908063_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEIKILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NC_004116.1|WP_000122194.1|907069_907411_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NC_004116.1|WP_000929489.1|906203_907073_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NC_004116.1|WP_001040087.1|902089_906202_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NC_004116.1|WP_000653357.1|901045_901702_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NC_004116.1|WP_000323544.1|900285_901056_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NC_004116.1|WP_000523795.1|899547_900285_+|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NC_004116.1|WP_000914664.1|898413_899544_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NC_004116.1|WP_001241816.1|897941_898322_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NC_004116.1|WP_000159234.1|897545_897917_+|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>NC_004116.1|WP_000438314.1|910406_910823_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NC_004116.1|WP_001019133.1|910958_912791_+|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NC_004116.1|WP_000678300.1|913037_915671_+|pneumococcal-type-histidine-triad-protein
MKGQKIIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANTKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELYLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NC_004116.1|WP_000180005.1|915770_916430_+|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIIHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NC_004116.1|WP_000621142.1|916438_916903_+|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NC_004116.1|WP_000665410.1|916902_917337_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NC_004116.1|WP_000168898.1|917488_920281_+|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKGSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>NC_004116.1|WP_000065321.1|920280_921384_+|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>NC_004116.1|WP_000146565.1|921504_922143_-|CatB-related-O-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NC_004116.1|WP_001056394.1|922853_923465_+|TVP38/TMEM64-family-protein
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_004116_1	1.17\|909256\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909256-909285	30	NC_004116.1	1146152-1146181	0	1.0

1. spacer 1.17|909256|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to position: 1146152-1146181, mismatch: 0, identity: 1.0

agtactgcactaggaattgtagagatcaaa	CRISPR spacer
agtactgcactaggaattgtagagatcaaa	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_004116_1	1.6\|908530\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908530-908559	30	MK448729	Streptococcus phage Javan31, complete genome	15971-16000	0	1.0
NC_004116_1	1.6\|908530\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908530-908559	30	MK448691	Streptococcus phage Javan17, complete genome	15971-16000	0	1.0
NC_004116_1	1.6\|908530\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908530-908559	30	MK448948	Streptococcus phage Javan46, complete genome	15915-15944	0	1.0
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	MH853356	Streptococcus phage LF2, partial genome	1327-1356	0	1.0
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	MK448796	Streptococcus phage Javan53, complete genome	19438-19467	0	1.0
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	MK448851	Streptococcus phage Javan14, complete genome	16958-16987	0	1.0
NC_004116_1	1.15\|909124\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909124-909153	30	MK448956	Streptococcus phage Javan48, complete genome	33709-33738	0	1.0
NC_004116_1	1.15\|909124\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909124-909153	30	MK448742	Streptococcus phage Javan37, complete genome	30403-30432	0	1.0
NC_004116_1	1.15\|909124\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909124-909153	30	JX409894	Streptococcus phage LYGO9, complete genome	13405-13434	0	1.0
NC_004116_1	1.15\|909124\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909124-909153	30	JX409895	Streptococcus phage JX01, complete genome	25252-25281	0	1.0
NC_004116_1	1.16\|909190\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909190-909219	30	MK448837	Streptococcus phage Javan10, complete genome	30521-30550	0	1.0
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MK448971	Streptococcus phage Javan52, complete genome	15906-15935	0	1.0
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MK448829	Streptococcus phage Javan7, complete genome	12452-12481	0	1.0
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MH853355	Streptococcus phage LF1, complete genome	3309-3338	0	1.0
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MH853356	Streptococcus phage LF2, partial genome	3481-3510	0	1.0
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MK448837	Streptococcus phage Javan10, complete genome	10978-11007	0	1.0
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MH853358	Streptococcus phage LF4, complete genome	3309-3338	0	1.0
NC_004116_1	1.20\|909454\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909454-909483	30	MH853356	Streptococcus phage LF2, partial genome	1240-1269	0	1.0
NC_004116_1	1.20\|909454\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909454-909483	30	MK448796	Streptococcus phage Javan53, complete genome	19525-19554	0	1.0
NC_004116_1	1.20\|909454\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909454-909483	30	MK448851	Streptococcus phage Javan14, complete genome	17045-17074	0	1.0
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	NZ_CP046625	Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence	21288-21317	1	0.967
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	KY065475	Streptococcus phage IPP35, complete genome	4596-4625	1	0.967
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	KY065474	Streptococcus phage IPP34, complete genome	4734-4763	1	0.967
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MK448956	Streptococcus phage Javan48, complete genome	14516-14545	1	0.967
NC_004116_1	1.18\|909322\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909322-909351	30	MK448749	Streptococcus phage Javan39, complete genome	14516-14545	1	0.967
NC_004116_1	1.10\|908794\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908794-908823	30	NZ_CP046625	Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence	38972-39001	2	0.933
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MK448707	Streptococcus phage Javan227, complete genome	9158-9187	2	0.933
NC_004116_1	1.16\|909190\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909190-909219	30	MK448971	Streptococcus phage Javan52, complete genome	37293-37322	2	0.933
NC_004116_1	1.16\|909190\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909190-909219	30	MK448829	Streptococcus phage Javan7, complete genome	31986-32015	2	0.933
NC_004116_1	1.16\|909190\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909190-909219	30	MH853355	Streptococcus phage LF1, complete genome	22843-22872	2	0.933
NC_004116_1	1.16\|909190\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909190-909219	30	MH853358	Streptococcus phage LF4, complete genome	22843-22872	2	0.933
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	AP013551	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, * SEQUENCING IN PROGRESS *, 2 ordered pieces	11544-11573	4	0.867
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	AP013583	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S25-C129, * SEQUENCING IN PROGRESS *	3832-3861	4	0.867
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MK448775	Streptococcus phage Javan489, complete genome	5974-6003	4	0.867
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MK448969	Streptococcus phage Javan514, complete genome	4602-4631	4	0.867
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MK448794	Streptococcus phage Javan525, complete genome	4165-4194	4	0.867
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MK448773	Streptococcus phage Javan485, complete genome	4602-4631	4	0.867
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MK448765	Streptococcus phage Javan459, complete genome	4165-4194	4	0.867
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MK448673	Streptococcus phage Javan119, complete genome	5158-5187	4	0.867
NC_004116_1	1.6\|908530\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908530-908559	30	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	896995-897024	6	0.8
NC_004116_1	1.8\|908662\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908662-908691	30	CP016196	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence	65238-65267	6	0.8
NC_004116_1	1.9\|908728\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908728-908757	30	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	378745-378774	6	0.8
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	KY653126	Staphylococcus phage IME1354_01, complete genome	19044-19073	6	0.8
NC_004116_1	1.19\|909388\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909388-909417	30	KX507046	Vibrio phage S4-7, complete genome	116913-116942	6	0.8
NC_004116_1	1.24\|909718\|30\|NC_004116\|CRISPRCasFinder,CRT	909718-909747	30	NC_047897	Lactobacillus phage Lenus, complete genome	65427-65456	6	0.8
NC_004116_1	1.24\|909718\|30\|NC_004116\|CRISPRCasFinder,CRT	909718-909747	30	AP013698	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C55A-MedDCM-OCT-S36-C68, * SEQUENCING IN PROGRESS *	17874-17903	6	0.8
NC_004116_1	1.6\|908530\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908530-908559	30	MH598807	Pelagibacter phage HTVC120P, complete genome	23282-23311	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP019166	Listeria monocytogenes strain HPB5415 plasmid pLM5578, complete sequence	38995-39024	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_KU513859	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 plasmid pLmA144, complete sequence	62440-62469	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_022045	Listeria monocytogenes strain N1-011A plasmid, complete sequence	50244-50273	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	MK134858	Listeria monocytogenes plasmid pLM1686, complete sequence	64668-64697	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_019009	Staphylococcus aureus plasmid SAP078A, complete sequence	28628-28657	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP035102	Staphylococcus aureus subsp. aureus strain ATCC 12600 plasmid unnamed, complete sequence	18977-19006	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	LT699705	Staphylococcus aureus strain NZ15MR0322 genome assembly, plasmid: 2	21410-21439	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP025561	Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence	14148-14177	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	25203-25232	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP026065	Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed	8973-9002	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP025569	Listeria monocytogenes strain PIR00540 plasmid pPIR00540, complete sequence	10686-10715	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP015985	Listeria monocytogenes strain 2015TE24968 plasmid pl2015TE24968, complete sequence	50212-50241	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_HG813248	Listeria monocytogenes R479a plasmid pLMR479a, complete sequence	62440-62469	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP020021	Staphylococcus aureus subsp. aureus strain ATCC 6538 plasmid unnamed1, complete sequence	5697-5726	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP035004	Staphylococcus aureus strain PCFA-221 plasmid pP541, complete sequence	13286-13315	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_021828	Listeria monocytogenes strain R2-502 plasmid, complete sequence	41532-41561	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP041214	Listeria monocytogenes strain LMP18-H8393 plasmid pCFSAN074382, complete sequence	10334-10363	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	MN693417	Marine virus AFVG_25M193, complete genome	17726-17755	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP023753	Listeria monocytogenes strain AT3E plasmid pLM58, complete sequence	39348-39377	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP011527	Staphylococcus aureus subsp. aureus DSM 20231 plasmid unnamed, complete sequence	17014-17043	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_018965	Staphylococcus aureus plasmid SAP077A, complete sequence	20283-20312	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_013767	Listeria monocytogenes 08-5578 plasmid pLM5578, complete sequence	1996-2025	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_018889	Listeria monocytogenes SLCC2372 plasmid pLM1-2cUG1, complete sequence	22482-22511	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_014495	Listeria monocytogenes serotype 1-2b str. SLCC2755 plasmid pLM1-2bUG1 complete sequence	30162-30191	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_013322	Staphylococcus aureus plasmid SAP019A, complete sequence	24906-24935	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_013340	Staphylococcus aureus plasmid SAP076A, complete sequence	15177-15206	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP009362	Staphylococcus aureus subsp. aureus strain ATCC 25923 plasmid pS1945, complete sequence	24962-24991	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP013725	Listeria monocytogenes strain Lm N1546 plasmid pLmN1546, complete sequence	41912-41941	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_LT992457	Staphylococcus aureus isolate 1_1439 plasmid II	21823-21852	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP029750	Staphylococcus aureus strain Smith plasmid pSS41, complete sequence	18037-18066	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP035006	Staphylococcus aureus strain PCFH-226 plasmid pP541, complete sequence	9920-9949	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP025083	Listeria monocytogenes strain MF4626 plasmid pMF4626, complete sequence	39349-39378	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_AP014943	Staphylococcus aureus strain FDA209P plasmid pFDA209P, complete sequence	8520-8549	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP040999	Staphylococcus aureus strain FDAARGOS_773 plasmid unnamed1, complete sequence	17046-17075	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP021906	Staphylococcus aureus strain Seattle 1945 isolate G477 plasmid pG477, complete sequence	24961-24990	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP045973	Listeria monocytogenes strain AUSMDU00000224 plasmid pAUSMDU00000224_01, complete sequence	29834-29863	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP028469	Staphylococcus aureus strain IT1-S plasmid pIT1-S, complete sequence	14169-14198	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	84516-84545	7	0.767
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	188785-188814	7	0.767
NC_004116_1	1.8\|908662\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908662-908691	30	EU874396	Bacillus phage IEBH, complete genome	47576-47605	7	0.767
NC_004116_1	1.8\|908662\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908662-908691	30	NC_029024	Bacillus phage 250, complete genome	34946-34975	7	0.767
NC_004116_1	1.9\|908728\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908728-908757	30	NZ_CP017198	Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-1, complete genome	4689-4718	7	0.767
NC_004116_1	1.9\|908728\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908728-908757	30	NZ_CP019729	Jeotgalibaca dankookensis strain EX-07 plasmid unnamed, complete sequence	16416-16445	7	0.767
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	127760-127789	7	0.767
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	167716-167745	7	0.767
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	MK448885	Streptococcus phage Javan252, complete genome	21853-21882	7	0.767
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	59350-59379	7	0.767
NC_004116_1	1.12\|908926\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908926-908955	30	MN693067	Marine virus AFVG_25M523, complete genome	9634-9663	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	NC_011038	Yersinia phage Yepe2, complete genome	3558-3587	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	JQ965702	Yersinia phage YpP-G, complete sequence	3710-3739	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	KP313531	Citrobacter phage phiCFP-1, complete genome	4562-4591	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	KP791807	Enterobacter phage E-4, complete genome	17634-17663	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	KP791805	Enterobacter phage E-2, complete genome	17634-17663	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	MN013074	Klebsiella phage vB_KpnP_Emp27, complete genome	20801-20830	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	KU687348	Citrobacter phage SH2, complete genome	4257-4286	7	0.767
NC_004116_1	1.13\|908992\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908992-909021	30	NC_047766	Escherichia phage ECA2, complete genome	20896-20925	7	0.767
NC_004116_1	1.16\|909190\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909190-909219	30	MT430910	Streptococcus phage smHBZ8, complete genome	14594-14623	7	0.767
NC_004116_1	1.24\|909718\|30\|NC_004116\|CRISPRCasFinder,CRT	909718-909747	30	NC_047925	Lactobacillus phage Nyseid, complete genome	67879-67908	7	0.767
NC_004116_1	1.24\|909718\|30\|NC_004116\|CRISPRCasFinder,CRT	909718-909747	30	KU052488	Lactobacillus phage SA-C12, complete genome	24549-24578	7	0.767
NC_004116_1	1.24\|909718\|30\|NC_004116\|CRISPRCasFinder,CRT	909718-909747	30	MN693473	Marine virus AFVG_25M504, complete genome	22237-22266	7	0.767
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	NZ_CP040831	Paenibacillus polymyxa strain ZF129 plasmid pAP2, complete sequence	31420-31449	8	0.733
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	NZ_CP013280	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-5-100K, complete sequence	93863-93892	8	0.733
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	NZ_CP039726	Bacillus thuringiensis strain BT-59 plasmid p5, complete sequence	102909-102938	8	0.733
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	NZ_CP009350	Bacillus thuringiensis HD1002 plasmid 4, complete sequence	15250-15279	8	0.733
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	AP014171	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61B-MedDCM-OCT-S44-C38, * SEQUENCING IN PROGRESS *	17590-17619	8	0.733
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	AP014170	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61B-MedDCM-OCT-S25-C16, * SEQUENCING IN PROGRESS *	21317-21346	8	0.733
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	AP014169	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61B-MedDCM-OCT-S24-C48, * SEQUENCING IN PROGRESS *	15382-15411	8	0.733
NC_004116_1	1.5\|908464\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908464-908493	30	NC_018510	Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence	173102-173131	8	0.733
NC_004116_1	1.6\|908530\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908530-908559	30	MN562221	Photobacterium phage PDCC-1, complete genome	214503-214532	8	0.733
NC_004116_1	1.6\|908530\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908530-908559	30	MK368614	Vibrio phage 2 TSL-2019, complete genome	22977-23006	8	0.733
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	504904-504933	8	0.733
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	46856-46885	8	0.733
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP017464	Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence	94991-95020	8	0.733
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	109771-109800	8	0.733
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NC_015427	Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence	13649-13678	8	0.733
NC_004116_1	1.7\|908596\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908596-908625	30	NZ_LR134433	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24	63316-63345	8	0.733
NC_004116_1	1.8\|908662\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908662-908691	30	NZ_CP018932	Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence	95490-95519	8	0.733
NC_004116_1	1.9\|908728\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908728-908757	30	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	108604-108633	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	203346-203375	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	172845-172874	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	MT080590	UNVERIFIED: Staphylococcus phage vB_SauM_EW27, complete genome	121000-121029	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	KX532239	Staphylococcus phage StAP1, complete genome	28709-28738	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	LC492751	Staphylococcus phage KSAP7 genomic DNA, compelete genome	16598-16627	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	JX194239	Staphylococcus phage SA11, complete genome	107543-107572	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	LC492752	Staphylococcus phage KSAP11 genomic DNA, compelete genome	16418-16447	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	MT080584	UNVERIFIED: Staphylococcus phage vB_SauM_EW15, complete genome	14872-14901	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	MT080587	UNVERIFIED: Staphylococcus phage vB_SauM_EW20, complete genome	48944-48973	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	NC_022090	Staphylococcus phage vB_SauM_Remus, complete genome	16399-16428	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	KP881332	Staphylococcus phage Stau2, complete genome	20959-20988	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	MT080588	UNVERIFIED: Staphylococcus phage vB_SauM_EW22, complete genome	25167-25196	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	MT080595	UNVERIFIED: Staphylococcus phage vB_SauM_EW41, partial genome	9076-9105	8	0.733
NC_004116_1	1.14\|909058\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	909058-909087	30	NC_020877	Staphylococcus phage vB_SauM_Romulus, complete genome	16399-16428	8	0.733
NC_004116_1	1.24\|909718\|30\|NC_004116\|CRISPRCasFinder,CRT	909718-909747	30	AP018932	Escherichia phage KIT03 DNA, complete sequence	154828-154857	8	0.733
NC_004116_1	1.8\|908662\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908662-908691	30	MN694003	Marine virus AFVG_250M677, complete genome	27091-27120	9	0.7
NC_004116_1	1.11\|908860\|30\|NC_004116\|PILER-CR,CRISPRCasFinder,CRT	908860-908889	30	MN694485	Marine virus AFVG_250M19, complete genome	31257-31286	9	0.7

1. spacer 1.6|908530|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 0, identity: 1.0

atgtaaggtattgtaaaacttcttcttgcg	CRISPR spacer
atgtaaggtattgtaaaacttcttcttgcg	Protospacer
******************************

2. spacer 1.6|908530|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 0, identity: 1.0

atgtaaggtattgtaaaacttcttcttgcg	CRISPR spacer
atgtaaggtattgtaaaacttcttcttgcg	Protospacer
******************************

3. spacer 1.6|908530|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 0, identity: 1.0

atgtaaggtattgtaaaacttcttcttgcg	CRISPR spacer
atgtaaggtattgtaaaacttcttcttgcg	Protospacer
******************************

4. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

actgttcctataattaaaataaaagaggta	CRISPR spacer
actgttcctataattaaaataaaagaggta	Protospacer
******************************

5. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

actgttcctataattaaaataaaagaggta	CRISPR spacer
actgttcctataattaaaataaaagaggta	Protospacer
******************************

6. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 0, identity: 1.0

actgttcctataattaaaataaaagaggta	CRISPR spacer
actgttcctataattaaaataaaagaggta	Protospacer
******************************

7. spacer 1.15|909124|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

gcgatgatggtaagtcatcatggacagcgt	CRISPR spacer
gcgatgatggtaagtcatcatggacagcgt	Protospacer
******************************

8. spacer 1.15|909124|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

gcgatgatggtaagtcatcatggacagcgt	CRISPR spacer
gcgatgatggtaagtcatcatggacagcgt	Protospacer
******************************

9. spacer 1.15|909124|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

gcgatgatggtaagtcatcatggacagcgt	CRISPR spacer
gcgatgatggtaagtcatcatggacagcgt	Protospacer
******************************

10. spacer 1.15|909124|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 0, identity: 1.0

gcgatgatggtaagtcatcatggacagcgt	CRISPR spacer
gcgatgatggtaagtcatcatggacagcgt	Protospacer
******************************

11. spacer 1.16|909190|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

ttttacacacgatgtcagatataatgtcaa	CRISPR spacer
ttttacacacgatgtcagatataatgtcaa	Protospacer
******************************

12. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 0, identity: 1.0

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
cgtaccatctatcaatttaccgcaagctgt	Protospacer
******************************

13. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
cgtaccatctatcaatttaccgcaagctgt	Protospacer
******************************

14. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
cgtaccatctatcaatttaccgcaagctgt	Protospacer
******************************

15. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
cgtaccatctatcaatttaccgcaagctgt	Protospacer
******************************

16. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
cgtaccatctatcaatttaccgcaagctgt	Protospacer
******************************

17. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
cgtaccatctatcaatttaccgcaagctgt	Protospacer
******************************

18. spacer 1.20|909454|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

ttctaaatgctggtgactgctttgcataaa	CRISPR spacer
ttctaaatgctggtgactgctttgcataaa	Protospacer
******************************

19. spacer 1.20|909454|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

ttctaaatgctggtgactgctttgcataaa	CRISPR spacer
ttctaaatgctggtgactgctttgcataaa	Protospacer
******************************

20. spacer 1.20|909454|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 0, identity: 1.0

ttctaaatgctggtgactgctttgcataaa	CRISPR spacer
ttctaaatgctggtgactgctttgcataaa	Protospacer
******************************

21. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046625 (Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence) position: , mismatch: 1, identity: 0.967

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
acaaaatcttttgttgcccctggacgtatt	Protospacer
*****************.************

22. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KY065475 (Streptococcus phage IPP35, complete genome) position: , mismatch: 1, identity: 0.967

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tagtacagttgtcaaggagattgtgagcga	Protospacer
****.*************************

23. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KY065474 (Streptococcus phage IPP34, complete genome) position: , mismatch: 1, identity: 0.967

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tagtacagttgtcaaggagattgtgagcga	Protospacer
****.*************************

24. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 1, identity: 0.967

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
tgtaccatctatcaatttaccgcaagctgt	Protospacer
.*****************************

25. spacer 1.18|909322|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 1, identity: 0.967

cgtaccatctatcaatttaccgcaagctgt	CRISPR spacer
tgtaccatctatcaatttaccgcaagctgt	Protospacer
.*****************************

26. spacer 1.10|908794|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046625 (Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence) position: , mismatch: 2, identity: 0.933

ttcttcaagagaacttgtagaacagcttca	CRISPR spacer
ttcttcaagagaacttgtaaaacaacttca	Protospacer
*******************.****.*****

27. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448707 (Streptococcus phage Javan227, complete genome) position: , mismatch: 2, identity: 0.933

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tggagcagttgtcaaggagattgtgagcga	Protospacer
*.* **************************

28. spacer 1.16|909190|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 2, identity: 0.933

ttttacacacgatgtcagatataatgtcaa	CRISPR spacer
ttttacacacgatgtcagatacaatgtgaa	Protospacer
*********************.***** **

29. spacer 1.16|909190|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 2, identity: 0.933

ttttacacacgatgtcagatataatgtcaa	CRISPR spacer
ttttacacacgatgtcagatacaatgtgaa	Protospacer
*********************.***** **

30. spacer 1.16|909190|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 2, identity: 0.933

ttttacacacgatgtcagatataatgtcaa	CRISPR spacer
ttttacacacgatgtcagatacaatgtgaa	Protospacer
*********************.***** **

31. spacer 1.16|909190|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 2, identity: 0.933

ttttacacacgatgtcagatataatgtcaa	CRISPR spacer
ttttacacacgatgtcagatacaatgtgaa	Protospacer
*********************.***** **

32. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to AP013551 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 4, identity: 0.867

-aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
caatgt-cttttagcttgttcttctggtgct	Protospacer
 ** ** **************** *****.*

33. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to AP013583 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S25-C129, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 4, identity: 0.867

-aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
caatgt-cttttagcttgttcttctggtgct	Protospacer
 ** ** **************** *****.*

34. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 4, identity: 0.867

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tggagcaactgtcaaggagattgtgagcga	Protospacer
*.* ***..*********************

35. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448969 (Streptococcus phage Javan514, complete genome) position: , mismatch: 4, identity: 0.867

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tggagcaactgtcaaggagattgtgagcga	Protospacer
*.* ***..*********************

36. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 4, identity: 0.867

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tggagcaactgtcaaggagattgtgagcga	Protospacer
*.* ***..*********************

37. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448773 (Streptococcus phage Javan485, complete genome) position: , mismatch: 4, identity: 0.867

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tggagcaactgtcaaggagattgtgagcga	Protospacer
*.* ***..*********************

38. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 4, identity: 0.867

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tggagcaactgtcaaggagattgtgagcga	Protospacer
*.* ***..*********************

39. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 4, identity: 0.867

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tggagcaactgtcaaggagattgtgagcga	Protospacer
*.* ***..*********************

40. spacer 1.6|908530|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 6, identity: 0.8

atgtaaggtattgtaaaacttcttcttgcg	CRISPR spacer
ttgaaataaattgtaaaacttcttctggcg	Protospacer
 ** ** . ***************** ***

41. spacer 1.8|908662|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to CP016196 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence) position: , mismatch: 6, identity: 0.8

tgttccagtaaaaagtaattttaaagcatt	CRISPR spacer
ttatgaactaaaaagtaattctaaagcatt	Protospacer
*  *  * ************.*********

42. spacer 1.9|908728|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 6, identity: 0.8

cgctcgattgatgctatcaactatattgaa	CRISPR spacer
catgcgatcgatgctatcagctatattgag	Protospacer
*.. ****.**********.*********.

43. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KY653126 (Staphylococcus phage IME1354_01, complete genome) position: , mismatch: 6, identity: 0.8

aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
aatgatgttttagcttgttcttctgatgtt	Protospacer
** *   *************** **.****

44. spacer 1.19|909388|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KX507046 (Vibrio phage S4-7, complete genome) position: , mismatch: 6, identity: 0.8

ttaaaagatttaaactatcaagcgtcaatt	CRISPR spacer
ttgaaagatttaaacaatcaagcgataaaa	Protospacer
**.************ ******** .**

45. spacer 1.24|909718|30|NC_004116|CRISPRCasFinder,CRT matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 6, identity: 0.8

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggatggtactgttactaatccatcagcatt	Protospacer
 *.* .***  *******************

46. spacer 1.24|909718|30|NC_004116|CRISPRCasFinder,CRT matches to AP013698 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C55A-MedDCM-OCT-S36-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

-tggttatacatttactaatccatcagcatt	CRISPR spacer
ctcagta-acagttactaatacatcagcatt	Protospacer
 * . ** *** ******** **********

47. spacer 1.6|908530|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MH598807 (Pelagibacter phage HTVC120P, complete genome) position: , mismatch: 7, identity: 0.767

atgtaaggtattgtaaaacttctt---cttgcg	CRISPR spacer
ctataaggtattgtaaaacttgttaaattt---	Protospacer
 *.****************** **   .**

48. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019166 (Listeria monocytogenes strain HPB5415 plasmid pLM5578, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

49. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU513859 (Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 plasmid pLmA144, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

50. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

51. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK134858 (Listeria monocytogenes plasmid pLM1686, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

52. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_019009 (Staphylococcus aureus plasmid SAP078A, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

53. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035102 (Staphylococcus aureus subsp. aureus strain ATCC 12600 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

54. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to LT699705 (Staphylococcus aureus strain NZ15MR0322 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

55. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025561 (Listeria monocytogenes strain PIR00545 plasmid pPIR00545, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

56. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045744 (Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

57. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026065 (Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

58. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025569 (Listeria monocytogenes strain PIR00540 plasmid pPIR00540, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

59. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015985 (Listeria monocytogenes strain 2015TE24968 plasmid pl2015TE24968, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

60. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG813248 (Listeria monocytogenes R479a plasmid pLMR479a, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

61. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020021 (Staphylococcus aureus subsp. aureus strain ATCC 6538 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

62. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035004 (Staphylococcus aureus strain PCFA-221 plasmid pP541, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

63. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_021828 (Listeria monocytogenes strain R2-502 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

64. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041214 (Listeria monocytogenes strain LMP18-H8393 plasmid pCFSAN074382, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

65. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MN693417 (Marine virus AFVG_25M193, complete genome) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
gctgttcctgtaattaaattaaaaggacca	Protospacer
.********.******** ******.. .*

66. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023753 (Listeria monocytogenes strain AT3E plasmid pLM58, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

67. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011527 (Staphylococcus aureus subsp. aureus DSM 20231 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

68. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_018965 (Staphylococcus aureus plasmid SAP077A, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

69. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_013767 (Listeria monocytogenes 08-5578 plasmid pLM5578, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

70. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_018889 (Listeria monocytogenes SLCC2372 plasmid pLM1-2cUG1, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

71. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_014495 (Listeria monocytogenes serotype 1-2b str. SLCC2755 plasmid pLM1-2bUG1 complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

72. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_013322 (Staphylococcus aureus plasmid SAP019A, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

73. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_013340 (Staphylococcus aureus plasmid SAP076A, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

74. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009362 (Staphylococcus aureus subsp. aureus strain ATCC 25923 plasmid pS1945, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

75. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013725 (Listeria monocytogenes strain Lm N1546 plasmid pLmN1546, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

76. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT992457 (Staphylococcus aureus isolate 1_1439 plasmid II) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

77. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029750 (Staphylococcus aureus strain Smith plasmid pSS41, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

78. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035006 (Staphylococcus aureus strain PCFH-226 plasmid pP541, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

79. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025083 (Listeria monocytogenes strain MF4626 plasmid pMF4626, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

80. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014943 (Staphylococcus aureus strain FDA209P plasmid pFDA209P, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

81. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040999 (Staphylococcus aureus strain FDAARGOS_773 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

82. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021906 (Staphylococcus aureus strain Seattle 1945 isolate G477 plasmid pG477, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

83. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045973 (Listeria monocytogenes strain AUSMDU00000224 plasmid pAUSMDU00000224_01, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

84. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028469 (Staphylococcus aureus strain IT1-S plasmid pIT1-S, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
atttacattaaaattaaaataaaagaggta	Protospacer
*.*  . .** *******************

85. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 7, identity: 0.767

actgttcctataattaaaataaaagaggta	CRISPR spacer
attaatcctttaattaaaataaaagaagct	Protospacer
*.*. **** ****************.*.

86. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 7, identity: 0.767

actgttc----ctataattaaaataaaagaggta	CRISPR spacer
----ctctaaactataattaaaataaaacatgta	Protospacer
    .**    ***************** * ***

87. spacer 1.8|908662|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to EU874396 (Bacillus phage IEBH, complete genome) position: , mismatch: 7, identity: 0.767

tgttccagtaaaaagtaattttaaagcatt	CRISPR spacer
attttgagtcaaaattaattttaaagcatc	Protospacer
  **. *** **** **************.

88. spacer 1.8|908662|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_029024 (Bacillus phage 250, complete genome) position: , mismatch: 7, identity: 0.767

tgttccagtaaaaagtaattttaaagcatt	CRISPR spacer
attttgagtcaaaattaattttaaagcatc	Protospacer
  **. *** **** **************.

89. spacer 1.9|908728|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017198 (Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-1, complete genome) position: , mismatch: 7, identity: 0.767

cgctcgattgatgctatcaactatattgaa	CRISPR spacer
acagtgattaatgctatcaattatattgaa	Protospacer
    .****.**********.*********

90. spacer 1.9|908728|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019729 (Jeotgalibaca dankookensis strain EX-07 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cgctcgattgatgctatcaactatattgaa	CRISPR spacer
agggaaatgggtgctatcaactatattgaa	Protospacer
 *   .** *.*******************

91. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
caaatatttttagcttgttcttgtcgtaat	Protospacer
 *..**.***************** **. *

92. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
cagttatttttagcttgttcttgtcgcaat	Protospacer
 ** **.***************** *.. *

93. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 7, identity: 0.767

aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
ttagtgatttgagcttgttcttttggtgtt	Protospacer
  .**. *** *********** *******

94. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 7, identity: 0.767

aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
caaatatttttagcttgttcttgtcgtaat	Protospacer
 *..**.***************** **. *

95. spacer 1.12|908926|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MN693067 (Marine virus AFVG_25M523, complete genome) position: , mismatch: 7, identity: 0.767

acagctactgtaaattctgcttttacggtt	CRISPR spacer
caagctactggaaatactgcttttaagagt	Protospacer
  ******** **** ********* *. *

96. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_011038 (Yersinia phage Yepe2, complete genome) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tctggcagtagtcaacgagattgtgagctg	Protospacer
*   ***** ***** ************ .

97. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to JQ965702 (Yersinia phage YpP-G, complete sequence) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tctggcagtagtcaacgagattgtgagctg	Protospacer
*   ***** ***** ************ .

98. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KP313531 (Citrobacter phage phiCFP-1, complete genome) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tcttgcggttgtcaacgagattgtgaactg	Protospacer
*  ***.******** **********.* .

99. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KP791807 (Enterobacter phage E-4, complete genome) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tcttgcggttgtcaatgagattgtgaactg	Protospacer
*  ***.******** **********.* .

100. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KP791805 (Enterobacter phage E-2, complete genome) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tcttgcggttgtcaatgagattgtgaactg	Protospacer
*  ***.******** **********.* .

101. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MN013074 (Klebsiella phage vB_KpnP_Emp27, complete genome) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tcttgcggttgtcaatgagattgtgaactg	Protospacer
*  ***.******** **********.* .

102. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KU687348 (Citrobacter phage SH2, complete genome) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tcttgcggttgtcaatgagattgtgaactg	Protospacer
*  ***.******** **********.* .

103. spacer 1.13|908992|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_047766 (Escherichia phage ECA2, complete genome) position: , mismatch: 7, identity: 0.767

tagtgcagttgtcaaggagattgtgagcga	CRISPR spacer
tcttgcggttgtcaatgagattgtgaactg	Protospacer
*  ***.******** **********.* .

104. spacer 1.16|909190|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 7, identity: 0.767

ttttacacacgatgtcagatataatgtcaa	CRISPR spacer
ctttacacacgatatcagatatagttatga	Protospacer
.************.*********.*  ..*

105. spacer 1.24|909718|30|NC_004116|CRISPRCasFinder,CRT matches to NC_047925 (Lactobacillus phage Nyseid, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggacggtactgttactaatccatcagcatt	Protospacer
 *.. .***  *******************

106. spacer 1.24|909718|30|NC_004116|CRISPRCasFinder,CRT matches to KU052488 (Lactobacillus phage SA-C12, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggacggtactgttactaatccatcagcatt	Protospacer
 *.. .***  *******************

107. spacer 1.24|909718|30|NC_004116|CRISPRCasFinder,CRT matches to MN693473 (Marine virus AFVG_25M504, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
tggtgatacatttactaatcctatgccatc	Protospacer
**** ****************  .. ***.

108. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040831 (Paenibacillus polymyxa strain ZF129 plasmid pAP2, complete sequence) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
ggaaaatcttttgttgccccttgaccgcct	Protospacer
. ***************.*** ***   .*

109. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013280 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-5-100K, complete sequence) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
cttaaatcttttgttcctcctggatgggta	Protospacer
 . ************ ********.* .*

110. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039726 (Bacillus thuringiensis strain BT-59 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
cttaaatcttttgttcctcctggatgggta	Protospacer
 . ************ ********.* .*

111. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009350 (Bacillus thuringiensis HD1002 plasmid 4, complete sequence) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
cttaaatcttttgttcctcctggatgggta	Protospacer
 . ************ ********.* .*

112. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to AP014171 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61B-MedDCM-OCT-S44-C38, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
acagaatcttttgttactcctggtgatgac	Protospacer
***.***********.*******  .*. .

113. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to AP014170 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61B-MedDCM-OCT-S25-C16, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
acagaatcttttgttactcctggtgatgac	Protospacer
***.***********.*******  .*. .

114. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to AP014169 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61B-MedDCM-OCT-S24-C48, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
acagaatcttttgttactcctggtgatgac	Protospacer
***.***********.*******  .*. .

115. spacer 1.5|908464|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_018510 (Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence) position: , mismatch: 8, identity: 0.733

acaaaatcttttgttgctcctggacgtatt	CRISPR spacer
cttaaatcttttgttcctcctggatgggta	Protospacer
 . ************ ********.* .*

116. spacer 1.6|908530|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MN562221 (Photobacterium phage PDCC-1, complete genome) position: , mismatch: 8, identity: 0.733

atgtaaggtattgtaaaacttcttcttgcg	CRISPR spacer
tgcttaggtattttaaaacttgttcttgtt	Protospacer
   * ******* ******** ******.

117. spacer 1.6|908530|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MK368614 (Vibrio phage 2 TSL-2019, complete genome) position: , mismatch: 8, identity: 0.733

atgtaaggtattgtaaaacttcttcttgcg	CRISPR spacer
tacttaggtattttaaaacttgttcttgtt	Protospacer
   * ******* ******** ******.

118. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 8, identity: 0.733

actgttcctataattaaaataaaagaggta	CRISPR spacer
ccaacaaatatagttaaaataaaagaggta	Protospacer
 * ..   ****.*****************

119. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 8, identity: 0.733

actgttcctataattaaaataaaagaggta	CRISPR spacer
ttttacattaaaattaaaataaaagaggta	Protospacer
 .*  . .** *******************

120. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017464 (Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence) position: , mismatch: 8, identity: 0.733

actgttcctataattaaaataaaagaggta	CRISPR spacer
ttttacattaaaattaaaataaaagaggta	Protospacer
 .*  . .** *******************

121. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

actgttcctataattaaaataaaagaggta	CRISPR spacer
ttttacattaaaattaaaataaaagaggta	Protospacer
 .*  . .** *******************

122. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 8, identity: 0.733

actgttcctataattaaaataaaagaggta	CRISPR spacer
actcttactataattaaaataaatgctagg	Protospacer
*** ** **************** *  . .

123. spacer 1.7|908596|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134433 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24) position: , mismatch: 8, identity: 0.733

actgttcctataattaaaataaaagaggta	CRISPR spacer
aaaacactaataataaaaataaaagaggta	Protospacer
*  .. *. ***** ***************

124. spacer 1.8|908662|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018932 (Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tgttccagtaaaaagtaattttaaagcatt	CRISPR spacer
catgtttgtaaaaattaatttaaaagcatt	Protospacer
..* .. ******* ****** ********

125. spacer 1.9|908728|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 8, identity: 0.733

cgctcgattgatgctatcaactatattgaa	CRISPR spacer
agaatcagtgaagctatcaactatattgag	Protospacer
 *  . * *** *****************.

126. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
cttaacctttgaaattgtgaaagaattagt	Protospacer
.************* ********. *..

127. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
tttaacctttgaaattgtaaaagaattagt	Protospacer
************** ***.****. *..

128. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MT080590 (UNVERIFIED: Staphylococcus phage vB_SauM_EW27, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

129. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KX532239 (Staphylococcus phage StAP1, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

130. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to LC492751 (Staphylococcus phage KSAP7 genomic DNA, compelete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

131. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to JX194239 (Staphylococcus phage SA11, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

132. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to LC492752 (Staphylococcus phage KSAP11 genomic DNA, compelete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

133. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MT080584 (UNVERIFIED: Staphylococcus phage vB_SauM_EW15, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

134. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MT080587 (UNVERIFIED: Staphylococcus phage vB_SauM_EW20, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

135. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_022090 (Staphylococcus phage vB_SauM_Remus, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

136. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to KP881332 (Staphylococcus phage Stau2, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

137. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MT080588 (UNVERIFIED: Staphylococcus phage vB_SauM_EW22, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

138. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MT080595 (UNVERIFIED: Staphylococcus phage vB_SauM_EW41, partial genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

139. spacer 1.14|909058|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to NC_020877 (Staphylococcus phage vB_SauM_Romulus, complete genome) position: , mismatch: 8, identity: 0.733

tttaacctttgaaaatgtgaaaggctcgta	CRISPR spacer
gttaacctttgaaaatgtgcaacttacgct	Protospacer
 ****************** **  . **.

140. spacer 1.24|909718|30|NC_004116|CRISPRCasFinder,CRT matches to AP018932 (Escherichia phage KIT03 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

tggttatacatttactaatccatcagcatt	CRISPR spacer
gggtaatacatttactaatccaagcgaagg	Protospacer
 *** *****************   * *

141. spacer 1.8|908662|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 9, identity: 0.7

tgttccagtaaaaagtaattttaaagcatt	CRISPR spacer
aaaactcgtaaaaagtaatttcaaagcaaa	Protospacer
 .  *. **************.******

142. spacer 1.11|908860|30|NC_004116|PILER-CR,CRISPRCasFinder,CRT matches to MN694485 (Marine virus AFVG_250M19, complete genome) position: , mismatch: 9, identity: 0.7

aaggtacttttagcttgttcttgtggtgtt	CRISPR spacer
gtttgttttttagcttcttcttgcggtgtt	Protospacer
.     .********* ******.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40719 : 48825

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000220683.1\|40719_42174_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-53	32.5
WP_001291337.1\|42201_43224_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.2e-62	42.4
WP_000686114.1\|43391_43940_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-25	35.6
WP_000780022.1\|43962_44715_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000166549.1\|44734_46282_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.9e-78	49.2
WP_001045908.1\|46474_47374_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000783419.1\|47520_48825_+	LysM peptidoglycan-binding domain-containing protein	A0A2D1GNZ3	Streptomyces_phage	3.7e-05	40.5

DBSCAN-SWA_2

555616 : 629163

Streptococcus_phage(69.57%)

holin,tail,terminase,transposase,integrase,portal,capsid

attL 586672:586688|attR 626562:626578

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000595708.1\|555616_556813_+	voltage-gated chloride channel family protein	A0A1X9I5Z9	Streptococcus_phage	4.6e-103	54.5
WP_088181596.1\|557265_558070_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_001068667.1\|558253_558601_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264736.1\|558825_559905_-\|integrase	site-specific integrase	A0A1X9IGD8	Lactococcus_phage	7.2e-63	40.1
WP_000505363.1\|560027_560231_-	hypothetical protein	O34033	Streptococcus_phage	1.7e-10	48.4
WP_000891067.1\|560333_560891_-	GTP pyrophosphokinase	Q0H269	Geobacillus_phage	1.6e-18	30.2
WP_000550055.1\|560892_561690_-	XRE family transcriptional regulator	A0A1S5S8S8	Streptococcus_phage	2.6e-65	74.7
WP_000392846.1\|562050_562194_+	hypothetical protein	NA	NA	NA	NA
WP_001107539.1\|562190_562415_-	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	2.2e-22	67.6
WP_001104154.1\|562473_562632_+	hypothetical protein	J7KH24	Streptococcus_phage	9.9e-22	92.3
WP_000394501.1\|562661_562850_+	hypothetical protein	NA	NA	NA	NA
WP_000573030.1\|562832_563639_-	DUF4393 domain-containing protein	A0A1S5SD60	Streptococcus_phage	1.9e-28	36.5
WP_001183891.1\|563690_563882_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001072518.1\|563949_564699_+	phage antirepressor Ant	F8HGQ0	Streptococcus_phage	1.9e-78	59.6
WP_000879943.1\|565003_565234_+	hypothetical protein	NA	NA	NA	NA
WP_000431178.1\|565371_565596_+	hypothetical protein	J7KBY5	Streptococcus_phage	1.7e-35	95.9
WP_000774716.1\|565606_566467_+	phage replisome organizer N-terminal domain-containing protein	J7KBV5	Streptococcus_phage	5.6e-58	85.5
WP_000371783.1\|566447_566681_+	hypothetical protein	Q938N1	Temperate_phage	8.0e-36	94.8
WP_000166038.1\|566677_566818_+	hypothetical protein	NA	NA	NA	NA
WP_000229417.1\|566828_567083_+	hypothetical protein	J7KK18	Streptococcus_phage	1.1e-30	79.8
WP_001001351.1\|567085_567247_+	hypothetical protein	J7KDI4	Streptococcus_phage	5.2e-18	84.9
WP_000323859.1\|567248_567731_+	siphovirus Gp157 family protein	Q938M9	Temperate_phage	1.2e-44	92.5
WP_001231960.1\|567731_568406_+	ERF family protein	Q938M8	Temperate_phage	7.6e-95	82.6
WP_000609377.1\|568398_568815_+	single-stranded DNA-binding protein	Q938M7	Temperate_phage	1.5e-56	80.6
WP_000561483.1\|569395_570715_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.3e-57	39.5
WP_000165747.1\|570840_571044_+	hypothetical protein	J7KIX6	Streptococcus_phage	1.7e-26	96.8
WP_000143298.1\|571033_571510_+	RusA family crossover junction endodeoxyribonuclease	J7KBT1	Streptococcus_phage	1.3e-59	98.2
WP_000129030.1\|571499_571847_+	hypothetical protein	J7KK12	Streptococcus_phage	2.2e-53	87.0
WP_000763909.1\|571858_572161_+	DUF1599 domain-containing protein	J7KDH9	Streptococcus_phage	1.0e-30	74.7
WP_000612734.1\|572295_572712_+	hypothetical protein	Q938M1	Temperate_phage	1.1e-32	58.5
WP_000159369.1\|572708_572873_+	hypothetical protein	NA	NA	NA	NA
WP_000139629.1\|572869_573139_+	hypothetical protein	A7J287	Streptococcus_phage	1.3e-24	70.8
WP_000052302.1\|573141_573474_+	hypothetical protein	J7KDM7	Streptococcus_phage	2.6e-27	55.8
WP_001019148.1\|573780_574314_+	DUF1642 domain-containing protein	A0A097PAV5	Streptococcus_pyogenes_phage	1.6e-23	41.4
WP_000660741.1\|574310_574577_+	hypothetical protein	NA	NA	NA	NA
WP_000533373.1\|574967_575393_+	DUF1492 domain-containing protein	A0A0B5A564	Streptococcus_phage	6.4e-31	49.3
WP_017646473.1\|575975_576353_+	HNH endonuclease	Q7Y4J1	Streptococcus_phage	2.1e-41	71.3
WP_000725957.1\|576504_576861_+	hypothetical protein	A0A0B5A7G9	Streptococcus_phage	5.9e-22	49.6
WP_001108668.1\|576857_578126_+\|portal	phage portal protein	A0A1X9I693	Streptococcus_phage	2.4e-190	76.0
WP_000227333.1\|578118_579339_+	hypothetical protein	Q7Y4I9	Streptococcus_phage	6.6e-113	66.0
WP_000421991.1\|579338_579527_+	hypothetical protein	NA	NA	NA	NA
WP_000256853.1\|579634_581050_+\|terminase	terminase	A0A0B5A091	Streptococcus_phage	6.3e-216	74.8
WP_001288694.1\|581130_581595_+	DUF4355 domain-containing protein	A0A0B5A7G6	Streptococcus_phage	9.7e-41	51.3
WP_000841023.1\|581597_582500_+\|capsid	phage major capsid protein	A0A0B5A5W3	Streptococcus_phage	9.7e-146	86.0
WP_000640307.1\|582496_582712_+	hypothetical protein	M1PRX2	Streptococcus_phage	6.5e-08	52.9
WP_000180800.1\|582725_583157_+	phage Gp19/Gp15/Gp42 family protein	A0A0B5A2F6	Streptococcus_phage	3.8e-47	70.1
WP_000517229.1\|583107_583446_+	hypothetical protein	A0A0B5A086	Streptococcus_phage	1.4e-41	67.9
WP_000032787.1\|583438_583675_+	hypothetical protein	A0A1P8BMT2	Lactococcus_phage	2.5e-21	66.7
WP_000573598.1\|583675_584011_+	hypothetical protein	A0A1P8BMR5	Lactococcus_phage	9.8e-35	64.9
WP_000226354.1\|584020_584578_+\|tail	tail protein	M1PKG8	Streptococcus_phage	3.4e-64	65.8
WP_000858406.1\|584577_584823_+	hypothetical protein	A0A0B5A2F3	Streptococcus_phage	9.7e-16	55.3
WP_000916438.1\|584837_585209_+	DUF5361 domain-containing protein	A0A1P8BMT6	Lactococcus_phage	7.3e-31	54.0
WP_000224695.1\|585208_587221_+	hypothetical protein	Q9F4J3	Streptococcus_phage	9.8e-13	58.9
586672:586688	attL	NA	NA	NA	NA
WP_172581606.1\|587259_588735_+\|tail	phage tail family protein	J7KH53	Streptococcus_phage	2.9e-203	74.6
WP_000955548.1\|588735_592860_+\|tail	phage tail protein	J7KBT9	Streptococcus_phage	0.0e+00	75.5
WP_000536253.1\|592870_594877_+	hypothetical protein	J7KK23	Streptococcus_phage	3.6e-140	43.3
WP_000494205.1\|594902_595232_+	DUF1366 domain-containing protein	J7KDI9	Streptococcus_phage	7.2e-22	54.3
WP_000698337.1\|595206_595419_+	hypothetical protein	J7KDP6	Streptococcus_phage	2.1e-14	60.0
WP_000215499.1\|595431_595734_+	hypothetical protein	X2KT07	Streptococcus_phage	2.2e-25	59.6
WP_001001742.1\|595735_596071_+\|holin	phage holin	A0A1P8VVK6	Streptococcus_phage	6.8e-36	71.2
WP_000236381.1\|596072_596792_+	CHAP domain-containing protein	A0A1U9WRD0	Streptococcus_virus	1.6e-58	72.1
WP_000812952.1\|597124_598096_+	Abi family protein	A0A059NT88	Lactococcus_phage	1.3e-74	42.6
WP_000076715.1\|598199_598400_+	CsbD family protein	J7KJ36	Streptococcus_phage	9.6e-22	87.9
WP_000356856.1\|598440_598611_-	hypothetical protein	A0A286QNA2	Streptococcus_phage	1.1e-07	63.8
WP_000965642.1\|599027_599207_+	hypothetical protein	J7KIW4	Streptococcus_phage	2.1e-20	86.2
WP_079218646.1\|599306_599921_-\|integrase	site-specific integrase	F8HGP4	Streptococcus_phage	9.2e-55	60.7
WP_001872365.1\|599923_600190_-	hypothetical protein	Q77YW7	Streptococcus_phage	9.2e-20	65.2
WP_000640620.1\|600189_600594_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001122304.1\|600755_600956_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_001872364.1\|600980_601238_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	5.8e-11	43.5
WP_001867107.1\|601363_601573_+\|transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	1.4e-15	55.4
WP_000508795.1\|601745_601907_-	NINE protein	NA	NA	NA	NA
WP_000594360.1\|602648_603926_+	ABC transporter permease	NA	NA	NA	NA
WP_000353149.1\|603935_604592_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-22	31.8
WP_000594351.1\|604591_605968_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_000699093.1\|606064_606718_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.1e-25	33.6
WP_000734169.1\|606714_608034_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.2e-05	25.9
WP_000076708.1\|608910_609111_+	CsbD family protein	J7KJ36	Streptococcus_phage	8.4e-26	97.0
WP_000027835.1\|609152_609341_+	hypothetical protein	J7KIW4	Streptococcus_phage	3.3e-16	78.2
WP_000078931.1\|609765_610971_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_001106189.1\|611089_611650_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_000134196.1\|611650_613603_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.5e-143	44.8
WP_000094341.1\|613696_615421_+	septation ring formation regulator EzrA	NA	NA	NA	NA
WP_000589685.1\|615514_616156_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_000409124.1\|616176_616662_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_000137373.1\|616674_617130_-	YueI family protein	W6LLD2	Streptococcus_phage	7.8e-27	48.9
WP_000022832.1\|617327_618635_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-235	95.4
WP_000823931.1\|618742_619807_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_000772014.1\|620035_621319_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_001127193.1\|621311_621824_+	shikimate kinase	NA	NA	NA	NA
WP_000089337.1\|621880_623254_+	LCP family protein	NA	NA	NA	NA
WP_000902654.1\|623354_624710_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	D0R096	Streptococcus_phage	1.8e-191	73.6
WP_001142755.1\|624817_625039_+	hypothetical protein	NA	NA	NA	NA
WP_000757296.1\|625156_625894_+	acid phosphatase AphA	NA	NA	NA	NA
WP_001267084.1\|626214_626733_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
626562:626578	attR	NA	NA	NA	NA
WP_000944931.1\|627569_627899_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_123957763.1\|628018_629163_-\|transposase	IS3-like element ISSag5 family transposase	Q8W6R2	Burkholderia_virus	1.9e-16	26.1

DBSCAN-SWA_3

917488 : 946651

Streptococcus_phage(81.82%)

integrase

attL 916370:916385|attR 946464:946479

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
916370:916385	attL	NA	NA	NA	NA
WP_000168898.1\|917488_920281_+	cation-transporting P-type ATPase	M1HK51	Paramecium_bursaria_Chlorella_virus	7.1e-78	29.9
WP_000065321.1\|920280_921384_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_000146565.1\|921504_922143_-	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.9e-19	43.4
WP_001056394.1\|922853_923465_+	TVP38/TMEM64 family protein	M1Q152	Streptococcus_phage	2.7e-54	54.9
WP_001291561.1\|923638_924856_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_000814511.1\|924937_925141_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_000857133.1\|925601_925832_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000804885.1\|925828_926251_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_001227347.1\|926755_927109_+	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|927168_927336_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_000691727.1\|927454_929374_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	100.0
WP_001791010.1\|929389_929506_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224319.1\|929750_930683_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-171	100.0
WP_000769868.1\|930679_931681_-	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_000804748.1\|931677_933855_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|936287_936794_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|936768_937266_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|937382_937604_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000398284.1\|937646_938852_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_000879507.1\|938874_939027_-	hypothetical protein	NA	NA	NA	NA
WP_000813488.1\|939029_940415_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000985015.1\|940443_940830_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|940845_941160_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000467138.1\|941540_942323_-	hypothetical protein	NA	NA	NA	NA
WP_000192686.1\|942334_943033_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-19	26.6
WP_000312256.1\|943033_943402_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000457960.1\|943546_946651_+	DNA polymerase III subunit alpha	A0A0K1Y8J9	Streptomyces_phage	1.1e-114	28.8
946464:946479	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1187011 : 1263127

Bacillus_phage(23.08%)

integrase,transposase,tRNA,protease

attL 1226024:1226039|attR 1259013:1259028

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001259486.1\|1187011_1187722_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_000863794.1\|1187811_1188600_-	esterase family protein	NA	NA	NA	NA
WP_001280077.1\|1188656_1190318_-	ribonuclease J	NA	NA	NA	NA
WP_000245086.1\|1190613_1191375_-	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	7.0e-12	29.9
WP_000587303.1\|1191374_1192238_-	ABC transporter permease	NA	NA	NA	NA
WP_000790865.1\|1192250_1193255_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000006730.1\|1193613_1195269_+	fibronectin/fibrinogen-binding protein	A0A1J0F9J4	Only_Syngen_Nebraska_virus	2.3e-07	41.0
WP_000005476.1\|1195322_1196042_-	acetolactate decarboxylase	NA	NA	NA	NA
WP_000140344.1\|1196055_1197738_-	acetolactate synthase AlsS	NA	NA	NA	NA
WP_000934874.1\|1197847_1199074_-	hypothetical protein	NA	NA	NA	NA
WP_001081533.1\|1199063_1200254_-	AI-2E family transporter	NA	NA	NA	NA
WP_000796049.1\|1200345_1200807_-	NUDIX hydrolase	NA	NA	NA	NA
WP_000163512.1\|1200796_1201279_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_000403417.1\|1201496_1204715_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA
WP_000134279.1\|1204766_1205813_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.7e-69	43.6
WP_000139158.1\|1206019_1206613_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	NA	NA	NA
WP_000676112.1\|1206612_1207482_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-100	62.2
WP_000716832.1\|1207540_1208644_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_000647413.1\|1208652_1209441_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_000365679.1\|1209430_1210114_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000221657.1\|1210217_1210898_-	DnaD domain-containing protein	Q938N2	Temperate_phage	1.9e-08	31.8
WP_000365343.1\|1211015_1211534_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.6e-31	44.1
WP_001247520.1\|1211656_1214221_-	GBS Bsp-like repeat-containing protein	NA	NA	NA	NA
WP_000622237.1\|1214372_1216571_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.5e-72	28.9
WP_000124583.1\|1216567_1217329_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000405386.1\|1217330_1218260_-	ribonuclease Z	NA	NA	NA	NA
WP_000568323.1\|1218301_1218949_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_000573348.1\|1218941_1220180_-	GTPase HflX	NA	NA	NA	NA
WP_001226482.1\|1220270_1221161_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_000239229.1\|1221271_1221448_+	DUF3042 family protein	NA	NA	NA	NA
WP_000800370.1\|1221489_1222407_-	TDT family transporter	NA	NA	NA	NA
WP_000823016.1\|1222541_1226300_-	pullulanase	NA	NA	NA	NA
1226024:1226039	attL	NA	NA	NA	NA
WP_000130597.1\|1227216_1227801_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_000150956.1\|1227897_1229304_-	dipeptidase PepV	NA	NA	NA	NA
WP_000670189.1\|1229350_1229953_-	nitroreductase family protein	NA	NA	NA	NA
WP_001003952.1\|1231945_1233727_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_000567585.1\|1233885_1234653_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000285045.1\|1234711_1236052_-	MATE family efflux transporter	NA	NA	NA	NA
WP_000245056.1\|1236151_1236568_-	VOC family protein	NA	NA	NA	NA
WP_000582587.1\|1236571_1237069_-	hypothetical protein	NA	NA	NA	NA
WP_000162275.1\|1237290_1237887_+	Ltp family lipoprotein	NA	NA	NA	NA
WP_141453361.1\|1238075_1239180_+\|transposase	IS3-like element ISSag2 family transposase	A0A2I7SC85	Paenibacillus_phage	6.3e-70	48.9
WP_000754587.1\|1241014_1243483_-	pneumococcal-type histidine triad protein	NA	NA	NA	NA
WP_000755138.1\|1243495_1244416_-	metal ABC transporter substrate-binding lipoprotein/laminin-binding adhesin Lmb	NA	NA	NA	NA
WP_001292559.1\|1244649_1245927_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_001876742.1\|1246687_1249960_-	S8 family serine peptidase	A0A218KC60	Bacillus_phage	7.2e-05	39.4
WP_000453221.1\|1250614_1251949_-\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_011058349.1\|1252056_1252665_-	hypothetical protein	NA	NA	NA	NA
WP_000863581.1\|1252714_1252945_-	hypothetical protein	NA	NA	NA	NA
WP_000102864.1\|1253013_1253355_-	hypothetical protein	NA	NA	NA	NA
WP_164920426.1\|1254002_1255107_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	5.3e-69	48.5
WP_000201988.1\|1256679_1257879_-\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	2.1e-26	28.0
WP_001258319.1\|1257901_1258129_-	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_000286254.1\|1258407_1258632_-	helix-turn-helix transcriptional regulator	X5JA02	Clostridium_phage	4.4e-07	45.9
WP_000237149.1\|1258812_1260678_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
1259013:1259028	attR	NA	NA	NA	NA
WP_000431642.1\|1260664_1261030_-	MobC family plasmid mobilization relaxosome protein	NA	NA	NA	NA
WP_000527641.1\|1261036_1261399_-	hypothetical protein	NA	NA	NA	NA
WP_001281642.1\|1261819_1263127_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	7.5e-131	54.5

DBSCAN-SWA_5

1573137 : 1584656

Streptococcus_phage(90.91%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000767484.1\|1573137_1573965_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	4.3e-124	78.0
WP_000287944.1\|1574004_1574361_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.5e-41	71.8
WP_000966773.1\|1574362_1574839_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.0e-37	50.3
WP_000232156.1\|1574893_1576075_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.0e-168	75.6
WP_001167085.1\|1576137_1576686_-	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000603277.1\|1577978_1578614_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_000425856.1\|1578883_1579753_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	4.9e-110	70.4
WP_000358198.1\|1579752_1580079_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000364565.1\|1580108_1580972_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.3e-74	49.7
WP_000715592.1\|1580991_1581627_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.8e-67	61.1
WP_001144248.1\|1583267_1583927_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	5.2e-64	55.6
WP_000178146.1\|1583945_1584656_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-18	28.5

DBSCAN-SWA_6

1787516 : 1899330

114

Streptococcus_phage(82.26%)

holin,protease,tail,terminase,transposase,tRNA,integrase,portal,head,capsid

attL 1833085:1833105|attR 1867169:1867189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000160532.1\|1787516_1788683_+\|transposase	IS30-like element ISSag9 family transposase	NA	NA	NA	NA
WP_000429363.1\|1789081_1790809_-	ABC transporter permease/substrate binding protein	NA	NA	NA	NA
WP_000181803.1\|1790827_1792051_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-29	37.0
WP_001288399.1\|1792427_1794806_-	phosphoketolase family protein	NA	NA	NA	NA
WP_001134214.1\|1794895_1795987_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_000584681.1\|1796303_1797983_-	transcription antiterminator	NA	NA	NA	NA
WP_000806822.1\|1798048_1798810_-	hypothetical protein	NA	NA	NA	NA
WP_000222918.1\|1798829_1800347_-	carbohydrate kinase	NA	NA	NA	NA
WP_000717730.1\|1800412_1801402_-	amidohydrolase	NA	NA	NA	NA
WP_000888344.1\|1801423_1802875_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_000358398.1\|1802972_1803929_-	dihydrofolate reductase	A0A1J0F959	Only_Syngen_Nebraska_virus	2.3e-28	29.8
WP_000700534.1\|1803947_1804967_-	hypothetical protein	NA	NA	NA	NA
WP_000462134.1\|1805201_1806185_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000873297.1\|1806348_1806996_-	fructose-6-phosphate aldolase	M4SIN4	Cyanophage	4.5e-44	43.5
WP_001129982.1\|1807006_1807723_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_000197821.1\|1807724_1808588_-	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA
WP_000166859.1\|1808591_1809257_-	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_001049921.1\|1809369_1809855_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000241475.1\|1809921_1810200_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000427087.1\|1810227_1811667_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_001224528.1\|1811834_1812452_-	hypothetical protein	NA	NA	NA	NA
WP_000600819.1\|1812790_1813084_+	hypothetical protein	NA	NA	NA	NA
WP_000205037.1\|1813106_1814399_-	adenylosuccinate synthase	G5CQQ4	Megavirus	5.1e-71	36.7
WP_001021300.1\|1814768_1815791_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_000356661.1\|1816152_1816827_+	PAS domain-containing protein	NA	NA	NA	NA
WP_000582678.1\|1816996_1819249_+	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA
WP_000239573.1\|1819372_1820191_+	hypothetical protein	M1PFV6	Streptococcus_phage	2.0e-28	36.0
WP_001285393.1\|1820187_1821444_+	toxic anion resistance protein	M1PLC8	Streptococcus_phage	2.5e-123	63.3
WP_000357824.1\|1821583_1822459_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_000192730.1\|1822442_1823420_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000909526.1\|1823540_1824182_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	4.9e-51	49.5
WP_000586895.1\|1824195_1824687_+	N-acetyltransferase	NA	NA	NA	NA
WP_000020289.1\|1824906_1827354_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.5e-124	38.4
WP_000985641.1\|1827350_1827815_-	CtsR family transcriptional regulator	NA	NA	NA	NA
WP_001106578.1\|1827987_1828449_+	small multi-drug export protein	NA	NA	NA	NA
WP_000808080.1\|1828607_1829648_-	elongation factor Ts	NA	NA	NA	NA
WP_000268454.1\|1829741_1830512_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_000060540.1\|1830788_1831349_+	peroxiredoxin	NA	NA	NA	NA
WP_000242129.1\|1831366_1832899_+	alkyl hydroperoxide reductase subunit F	A0A1W6JNB4	Lactococcus_phage	9.1e-19	28.7
1833085:1833105	attL	NA	NA	NA	NA
WP_000878124.1\|1833317_1833722_-	type II toxin-antitoxin system HicB family antitoxin	A0A1P8VVW2	Streptococcus_phage	2.0e-66	99.3
WP_000139836.1\|1833782_1833968_-	type II toxin-antitoxin system HicA family toxin	A0A1P8VVU8	Streptococcus_phage	2.6e-29	100.0
WP_000405191.1\|1834174_1835581_-	glucosaminidase domain-containing protein	A0A1P8VVS3	Streptococcus_phage	4.9e-229	99.1
WP_000192161.1\|1835584_1835914_-\|holin	phage holin	A0A1P8VVR0	Streptococcus_phage	4.8e-50	100.0
WP_001135353.1\|1835916_1836327_-	hypothetical protein	A0A1P8VVS2	Streptococcus_phage	2.0e-69	100.0
WP_000213864.1\|1836361_1836700_-	hypothetical protein	A0A1P8VVU3	Streptococcus_phage	1.4e-60	97.3
WP_001071123.1\|1836702_1836933_-	hypothetical protein	A0A1P8VVV7	Streptococcus_phage	4.2e-29	98.7
WP_001880132.1\|1836949_1840624_-\|tail	phage tail protein	A0A1P8VVT1	Streptococcus_phage	0.0e+00	98.9
WP_000161556.1\|1840624_1841347_-	hypothetical protein	A0A1P8VVR4	Streptococcus_phage	1.1e-134	99.2
WP_000140777.1\|1841343_1844079_-\|tail	phage tail tape measure protein	A0A1P8VVW8	Streptococcus_phage	2.8e-268	99.2
WP_000591556.1\|1844264_1844741_-	hypothetical protein	A0A1P8VVU0	Streptococcus_phage	6.6e-85	98.7
WP_000222195.1\|1844740_1845424_-	hypothetical protein	A0A1P8VVR1	Streptococcus_phage	9.1e-128	100.0
WP_000508737.1\|1845438_1845783_-	hypothetical protein	A0A1P8VVU6	Streptococcus_phage	1.3e-58	98.2
WP_001074485.1\|1845769_1846117_-	hypothetical protein	A0A1P8VVS6	Streptococcus_phage	2.4e-60	99.1
WP_000842788.1\|1846116_1846422_-\|head,tail	head-tail adaptor protein	A0A1P8VVX4	Streptococcus_phage	1.4e-40	86.1
WP_000153862.1\|1846418_1846754_-	hypothetical protein	A0A1P8VVS7	Streptococcus_phage	7.0e-57	100.0
WP_000749069.1\|1846774_1848037_-\|capsid	phage major capsid protein	A0A1P8VVT0	Streptococcus_phage	9.9e-229	99.8
WP_000413200.1\|1848047_1848590_-\|head,protease	HK97 family phage prohead protease	A0A1P8VVX2	Streptococcus_phage	2.7e-98	100.0
WP_001067328.1\|1848639_1849782_-\|portal	phage portal protein	A0A1P8VVT4	Streptococcus_phage	6.6e-216	100.0
WP_000230004.1\|1849790_1851503_-\|terminase	terminase large subunit	A0A1P8VVW5	Streptococcus_phage	0.0e+00	100.0
WP_000601033.1\|1851495_1851981_-	hypothetical protein	A0A1S5SCZ6	Streptococcus_phage	1.6e-78	97.5
WP_000542279.1\|1852068_1852428_-	HNH endonuclease	A0A1P8VVU5	Streptococcus_phage	6.3e-64	100.0
WP_000651008.1\|1852427_1852715_-	hypothetical protein	A0A1P8VVZ1	Streptococcus_phage	8.1e-46	98.9
WP_001028147.1\|1853004_1853547_-\|integrase	site-specific integrase	A0A1S5SCL7	Streptococcus_phage	9.8e-101	100.0
WP_000163169.1\|1853656_1854121_-	hypothetical protein	A0A1P8VVT5	Streptococcus_phage	1.8e-82	100.0
WP_000776714.1\|1854117_1854465_-	helix-turn-helix transcriptional regulator	A0A1P8VVV5	Streptococcus_phage	4.0e-63	100.0
WP_001008140.1\|1854461_1854722_-	hypothetical protein	A0A1P8VVV2	Streptococcus_phage	9.9e-43	100.0
WP_000609565.1\|1854731_1855148_-	single-stranded DNA-binding protein	A0A1P8VVS8	Streptococcus_phage	8.6e-73	100.0
WP_000748199.1\|1855137_1855344_-	hypothetical protein	A0A1P8VVV0	Streptococcus_phage	6.2e-32	100.0
WP_070467532.1\|1855340_1855568_-	DUF3310 domain-containing protein	M1NRN1	Streptococcus_phage	4.4e-31	87.7
WP_000793494.1\|1855696_1856026_-	DUF1372 family protein	A0A1P8VVQ5	Streptococcus_phage	1.1e-54	94.5
WP_000169322.1\|1856025_1856517_-	MazG-like family protein	A0A1P8VVP1	Streptococcus_phage	4.9e-83	95.7
WP_000220553.1\|1856509_1856914_-	hypothetical protein	A0A1P8VVT9	Streptococcus_phage	2.3e-30	82.5
WP_000670039.1\|1856910_1858224_-	DNA (cytosine-5-)-methyltransferase	A0A1S5SDI9	Streptococcus_phage	1.0e-167	74.8
WP_001067868.1\|1858223_1859045_-	ATP-binding protein	A0A1P8VVV9	Streptococcus_phage	1.2e-150	96.7
WP_000079055.1\|1859045_1859792_-	conserved phage C-terminal domain-containing protein	A0A1P8VVR3	Streptococcus_phage	1.1e-139	100.0
WP_000712924.1\|1859769_1860372_-	hypothetical protein	A0A1P8VVT8	Streptococcus_phage	3.8e-114	100.0
WP_000343910.1\|1860373_1861705_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	7.4e-243	99.8
WP_001061695.1\|1861713_1861932_-	hypothetical protein	A0A1P8VVV1	Streptococcus_phage	3.3e-31	100.0
WP_000998974.1\|1861955_1862240_-	hypothetical protein	A0A1P8VVZ3	Streptococcus_phage	1.4e-50	100.0
WP_001006993.1\|1862239_1862770_-	HNH endonuclease	A0A1P8VVT6	Streptococcus_phage	1.3e-94	100.0
WP_001002368.1\|1862832_1863543_-	ORF6C domain-containing protein	A0A1S5SF52	Streptococcus_phage	3.5e-114	82.1
WP_000082755.1\|1863545_1863755_-	helix-turn-helix transcriptional regulator	A0A1P8VVQ4	Streptococcus_phage	3.2e-28	91.3
WP_001052630.1\|1863815_1864286_+	hypothetical protein	A0A1P8VVS1	Streptococcus_phage	8.8e-82	98.7
WP_000511144.1\|1864268_1864433_-	hypothetical protein	A0A1P8VVU2	Streptococcus_phage	1.8e-21	100.0
WP_000114553.1\|1864718_1865081_+	helix-turn-helix transcriptional regulator	A0A1P8VVY1	Streptococcus_phage	3.0e-61	100.0
WP_000762727.1\|1865087_1865468_+	ImmA/IrrE family metallo-endopeptidase	A0A1P8VVS0	Streptococcus_phage	4.5e-68	100.0
WP_001173134.1\|1865520_1865925_+	DUF4429 domain-containing protein	A0A1P8VVY3	Streptococcus_phage	8.1e-68	100.0
WP_000179397.1\|1866046_1867117_+\|integrase	site-specific integrase	A0A1P8VVR7	Streptococcus_phage	2.1e-200	100.0
WP_000393084.1\|1867259_1869329_-	sodium:proton antiporter	NA	NA	NA	NA
1867169:1867189	attR	NA	NA	NA	NA
WP_000080854.1\|1869330_1869567_-	hypothetical protein	NA	NA	NA	NA
WP_000737091.1\|1869733_1870687_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_000599038.1\|1870736_1872632_-	endopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	7.9e-73	30.7
WP_000570859.1\|1872779_1873763_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000689139.1\|1873808_1874972_-	MFS transporter	NA	NA	NA	NA
WP_000350703.1\|1875083_1875728_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_001272875.1\|1875793_1876408_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.8e-13	38.2
WP_000038817.1\|1876478_1877480_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000654954.1\|1877559_1879464_-	alginate lyase family protein	NA	NA	NA	NA
WP_000147945.1\|1879543_1880359_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_000355267.1\|1880345_1881212_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA
WP_000718802.1\|1881247_1881742_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA
WP_000975716.1\|1881796_1882993_-	unsaturated chondroitin disaccharide hydrolase	NA	NA	NA	NA
WP_000590444.1\|1882995_1883430_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000139169.1\|1883707_1884520_+	monomeric 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase DhuD	NA	NA	NA	NA
WP_000684791.1\|1884536_1885175_+	5-dehydro-4-deoxy-D-glucuronate isomerase DhuI	NA	NA	NA	NA
WP_000034943.1\|1885200_1886208_+	sugar kinase	NA	NA	NA	NA
WP_000597408.1\|1886219_1886858_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_000440334.1\|1888056_1889418_+	hypothetical protein	NA	NA	NA	NA
WP_000008878.1\|1889588_1890203_-	nitroreductase family protein	NA	NA	NA	NA
WP_000526288.1\|1890335_1890761_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_001292137.1\|1890887_1895294_-	DNA polymerase III subunit alpha	A0A0A7RWA3	Clostridium_phage	6.9e-19	33.0
WP_000842268.1\|1895416_1896001_-	glycoside hydrolase family 73 protein	S5M9Y4	Brevibacillus_phage	3.8e-10	34.7
WP_000814045.1\|1896125_1897979_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000900647.1\|1898070_1899330_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_7

1966824 : 2015841

Streptococcus_phage(21.43%)

integrase,holin,transposase,protease

attL 1961116:1961131|attR 1988421:1988436

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1961116:1961131	attL	NA	NA	NA	NA
WP_001262283.1\|1966824_1967952_-\|integrase	site-specific integrase	Q9AZR0	Lactococcus_phage	3.3e-42	30.3
WP_000184042.1\|1967955_1968141_-	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_000483441.1\|1968201_1969230_-	replication initiation factor domain-containing protein	NA	NA	NA	NA
WP_000201152.1\|1969232_1969652_-	hypothetical protein	NA	NA	NA	NA
WP_164920427.1\|1969977_1970262_-	hypothetical protein	NA	NA	NA	NA
WP_000221046.1\|1970584_1971199_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001009229.1\|1971371_1972928_-	SIR2 family protein	Q38324	Lactococcus_phage	4.2e-128	46.6
WP_000257255.1\|1973268_1974390_-\|integrase	site-specific integrase	A0A0M5M609	Bacillus_phage	3.9e-27	29.4
WP_001188031.1\|1974439_1974766_-	DUF771 domain-containing protein	A0A1W6JPI1	Staphylococcus_phage	3.2e-06	30.5
WP_000578743.1\|1974958_1975591_-	hypothetical protein	NA	NA	NA	NA
WP_000048867.1\|1975671_1976463_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_000829082.1\|1976479_1977028_-	hypothetical protein	NA	NA	NA	NA
WP_000511832.1\|1977027_1978401_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_000528441.1\|1978563_1978707_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_000357668.1\|1978896_1980897_-	hypothetical protein	NA	NA	NA	NA
WP_001279020.1\|1980912_1983183_-	ATP-binding protein	NA	NA	NA	NA
WP_088181596.1\|1983229_1984035_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_000390747.1\|1984295_1984706_-	conjugal transfer protein	NA	NA	NA	NA
WP_001055037.1\|1984716_1984983_-	hypothetical protein	NA	NA	NA	NA
WP_000565539.1\|1985003_1985957_-	conjugal transfer protein	NA	NA	NA	NA
WP_000481712.1\|1986009_1986264_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_000387490.1\|1986256_1986523_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_000560386.1\|1986667_1987141_-	hypothetical protein	NA	NA	NA	NA
WP_000383283.1\|1987148_1987631_-	antirestriction protein ArdA	NA	NA	NA	NA
WP_000017154.1\|1987683_1987956_-	hypothetical protein	NA	NA	NA	NA
WP_000010056.1\|1988090_1988660_-	hypothetical protein	NA	NA	NA	NA
1988421:1988436	attR	NA	NA	NA	NA
WP_000491711.1\|1988662_1990012_-	AAA family ATPase	V9QJ85	Oenococcus_phage	4.5e-70	34.1
WP_000737133.1\|1990208_1990508_-	helix-turn-helix transcriptional regulator	G3MBD2	Bacillus_virus	3.6e-12	50.0
WP_000287183.1\|1990491_1990869_-	hypothetical protein	NA	NA	NA	NA
WP_000338839.1\|1990884_1992117_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	1.3e-28	28.6
WP_000113194.1\|1992404_1994123_-	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	1.9e-41	31.6
WP_001062569.1\|1994142_1994604_-	hypothetical protein	NA	NA	NA	NA
WP_000808311.1\|1994625_1994922_-	hypothetical protein	NA	NA	NA	NA
WP_001281641.1\|1997466_1998720_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.4e-126	55.5
WP_001031939.1\|1998879_2000520_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	3.7e-50	29.8
WP_000640387.1\|2000548_2000941_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001053209.1\|2001646_2003215_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_000901036.1\|2003782_2004505_-	ABC transporter permease	NA	NA	NA	NA
WP_000470461.1\|2004508_2005126_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_001867162.1\|2005183_2005294_-	epipeptide YydF family RiPP	NA	NA	NA	NA
WP_001204133.1\|2005812_2006667_-	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	2.2e-30	37.2
WP_001191784.1\|2006845_2007238_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_000589231.1\|2007672_2008281_-	DUF2812 domain-containing protein	NA	NA	NA	NA
WP_000827865.1\|2008267_2008603_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000403109.1\|2009124_2009613_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000838139.1\|2009781_2010543_-	ABC transporter permease	NA	NA	NA	NA
WP_000644459.1\|2010539_2011442_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.3e-29	33.8
WP_001090962.1\|2011438_2011645_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA
WP_000900244.1\|2011646_2012723_-	helix-turn-helix transcriptional regulator	A0A0A7AQV8	Bacillus_phage	6.9e-05	40.4
WP_001036317.1\|2012971_2013586_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_000355473.1\|2013799_2014096_+	MazG-like family protein	NA	NA	NA	NA
WP_001223119.1\|2014112_2014673_+	TIGR00730 family Rossman fold protein	A0A1G5S9X4	Enterococcus_phage	2.5e-19	35.1
WP_001071071.1\|2014977_2015841_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_8

2129637 : 2136841

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042655.1\|2129637_2130342_-	transglycosylase SLT domain-containing protein	A0A2H4J6C5	uncultured_Caudovirales_phage	4.2e-27	56.6
WP_000029068.1\|2130447_2130987_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	6.7e-17	45.8
WP_000359358.1\|2131202_2131997_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_000510606.1\|2131989_2132832_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	2.0e-15	28.5
WP_000181757.1\|2132807_2133647_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	3.5e-20	30.0
WP_000976003.1\|2133646_2134189_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000217754.1\|2134311_2135595_-	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	2.2e-05	23.6
WP_000706188.1\|2135596_2136841_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	3.7e-87	41.3

Anti-CRISPR protein detection

Acr_ID: NC_004116.1|WP_000384270.1|234618_234945_+|replication-initiator-protein-A

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_004116.1|WP_000384270.1|234618_234945_+|replication-initiator-protein-A

234618_234945_+

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	0.9444444444444444	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_004116

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information