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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_003454 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 chromosome, complete genome 7 crisprs WYL,RT,csa3,DEDDh,cas4,DinG,cas2,cas1,cas3,cas5,cas7,cas8b2,cas6,PD-DExK 0 10 2 0

Results visualization

1. NC_003454
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_003454_1 3935-4204 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_003454_2 461346-461537 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_003454_3 625343-625440 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_003454_4 625621-626041 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_003454_5 812206-812300 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_003454_6 1396321-1396570 Orphan NA
3 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_003454_7 1836310-1837401 Unclear NA
16 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_003454_1 1.1|3953|24|NC_003454|CRT 3953-3976 24 MN582102 Siphoviridae sp. cttb18, complete genome 25841-25864 3 0.875
NC_003454_1 1.3|4037|24|NC_003454|CRT 4037-4060 24 NZ_CP011119 Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence 90238-90261 3 0.875
NC_003454_1 1.3|4037|24|NC_003454|CRT 4037-4060 24 MH617083 Microviridae sp. isolate ctca675, complete genome 4027-4050 3 0.875
NC_003454_1 1.3|4037|24|NC_003454|CRT 4037-4060 24 NC_010377 Yersinia enterocolitica plasmid pYE854, complete sequence 5531-5554 3 0.875
NC_003454_1 1.5|4121|24|NC_003454|CRT 4121-4144 24 NZ_CP044456 Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence 16104-16127 3 0.875
NC_003454_1 1.5|4121|24|NC_003454|CRT 4121-4144 24 NZ_CP010107 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-1, complete sequence 5562-5585 3 0.875
NC_003454_1 1.5|4121|24|NC_003454|CRT 4121-4144 24 NZ_CP039144 Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence 233788-233811 3 0.875
NC_003454_1 1.1|3953|24|NC_003454|CRT 3953-3976 24 NZ_AP022840 Legionella sp. TUM19329 plasmid pTUM19329-1 117512-117535 4 0.833
NC_003454_1 1.1|3953|24|NC_003454|CRT 3953-3976 24 MW067003 CrAssphage sp. C0531BW4, complete genome 18695-18718 4 0.833
NC_003454_1 1.4|4079|24|NC_003454|CRT 4079-4102 24 NZ_CP033095 Escherichia coli strain CP53 plasmid pCP53-92k, complete sequence 67120-67143 4 0.833
NC_003454_1 1.5|4121|24|NC_003454|CRT 4121-4144 24 NZ_CP045610 Bacillus cereus strain SB1 plasmid p4, complete sequence 3150-3173 4 0.833
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NC_015910 Borreliella bissettii DN127 plasmid cp32-7, complete sequence 27130-27165 7 0.806
NC_003454_7 7.5|1836603|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836603-1836637 35 MN856077 Bacteriophage sp. isolate 40, complete genome 17008-17042 8 0.771
NC_003454_7 7.1|1836340|37|NC_003454|CRT 1836340-1836376 37 MN693910 Marine virus AFVG_250M312, complete genome 27629-27665 9 0.757
NC_003454_7 7.5|1836603|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836603-1836637 35 MT375521 Pelagibacter phage Eistla EXVC0, complete genome 35335-35369 9 0.743
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NZ_CP028373 Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence 81515-81550 9 0.75
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NZ_CP014745 Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence 5944-5979 9 0.75
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NZ_CP014345 Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence 64575-64610 9 0.75
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NZ_CP014743 Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence 5944-5979 9 0.75
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NZ_CP017417 Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence 37373-37408 9 0.75
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NZ_CP044174 Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence 19519-19554 9 0.75
NC_003454_7 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836733-1836768 36 NZ_CP044176 Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence 76297-76332 9 0.75
NC_003454_7 7.15|1837270|34|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1837270-1837303 34 NC_019529 Vibrio phage pVp-1, complete genome 35918-35951 9 0.735
NC_003454_7 7.4|1836538|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836538-1836572 35 NZ_CP047445 Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8 11397-11431 10 0.714
NC_003454_7 7.4|1836538|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder 1836538-1836572 35 NZ_CP047429 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence 90085-90119 10 0.714
NC_003454_2 2.2|461452|59|NC_003454|PILER-CR 461452-461510 59 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 245267-245325 13 0.78
NC_003454_2 2.2|461452|59|NC_003454|PILER-CR 461452-461510 59 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 245800-245858 15 0.746
NC_003454_2 2.2|461452|59|NC_003454|PILER-CR 461452-461510 59 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 919928-919986 15 0.746

1. spacer 1.1|3953|24|NC_003454|CRT matches to MN582102 (Siphoviridae sp. cttb18, complete genome) position: , mismatch: 3, identity: 0.875

atgataataaagccattgaaaagg	CRISPR spacer
ttgataataaagccattgatacgg	Protospacer
 ****************** * **

2. spacer 1.3|4037|24|NC_003454|CRT matches to NZ_CP011119 (Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence) position: , mismatch: 3, identity: 0.875

ttcataatatagccagtaaaatac	CRISPR spacer
ttcaaaataaagccagtaaaataa	Protospacer
**** **** ************* 

3. spacer 1.3|4037|24|NC_003454|CRT matches to MH617083 (Microviridae sp. isolate ctca675, complete genome) position: , mismatch: 3, identity: 0.875

ttcataatatagccagtaaaatac	CRISPR spacer
ttcataatatagccagaaacataa	Protospacer
**************** ** *** 

4. spacer 1.3|4037|24|NC_003454|CRT matches to NC_010377 (Yersinia enterocolitica plasmid pYE854, complete sequence) position: , mismatch: 3, identity: 0.875

ttcataatatagccagtaaaatac	CRISPR spacer
ttcaaaataaagccagtaaaataa	Protospacer
**** **** ************* 

5. spacer 1.5|4121|24|NC_003454|CRT matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 3, identity: 0.875

ttaaaaatacagttagtggattta	CRISPR spacer
tgaaaaatacagttagtgtatttt	Protospacer
* **************** **** 

6. spacer 1.5|4121|24|NC_003454|CRT matches to NZ_CP010107 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-1, complete sequence) position: , mismatch: 3, identity: 0.875

ttaaaaatacagttagtggattta	CRISPR spacer
gtaaaaatacagttagtagattaa	Protospacer
 ****************.**** *

7. spacer 1.5|4121|24|NC_003454|CRT matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 3, identity: 0.875

ttaaaaatacagttagtggattta	CRISPR spacer
tgaaaaatacagttagtgtatttt	Protospacer
* **************** **** 

8. spacer 1.1|3953|24|NC_003454|CRT matches to NZ_AP022840 (Legionella sp. TUM19329 plasmid pTUM19329-1) position: , mismatch: 4, identity: 0.833

atgataataaagccattgaaaagg	CRISPR spacer
ttgataataatgccattgaaaaca	Protospacer
 ********* *********** .

9. spacer 1.1|3953|24|NC_003454|CRT matches to MW067003 (CrAssphage sp. C0531BW4, complete genome) position: , mismatch: 4, identity: 0.833

atgataataaagccattgaaaagg	CRISPR spacer
atgataataaagctattgaaacta	Protospacer
*************.*******  .

10. spacer 1.4|4079|24|NC_003454|CRT matches to NZ_CP033095 (Escherichia coli strain CP53 plasmid pCP53-92k, complete sequence) position: , mismatch: 4, identity: 0.833

gcaataatgcagctgatggggtaa	CRISPR spacer
atgataatgcagctgatggggaaa	Protospacer
...****************** **

11. spacer 1.5|4121|24|NC_003454|CRT matches to NZ_CP045610 (Bacillus cereus strain SB1 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.833

ttaaaaatacagttagtggattta	CRISPR spacer
gtaaaaatacagttagtagattag	Protospacer
 ****************.**** .

12. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NC_015910 (Borreliella bissettii DN127 plasmid cp32-7, complete sequence) position: , mismatch: 7, identity: 0.806

--aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
aagaattaa--aggaaaaattaaaagataaagaaaaat	Protospacer
  .****.*  ******* ******.*********** 

13. spacer 7.5|1836603|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to MN856077 (Bacteriophage sp. isolate 40, complete genome) position: , mismatch: 8, identity: 0.771

cttagaacaaagagcagaattattaaaaaattctc	CRISPR spacer
tatgaaacaaagagaagaattattaaaaaagcatc	Protospacer
. *..********* *************** . **

14. spacer 7.1|1836340|37|NC_003454|CRT matches to MN693910 (Marine virus AFVG_250M312, complete genome) position: , mismatch: 9, identity: 0.757

ttattctttccctgcaatcatttatatcttgttcgat	CRISPR spacer
catatttttccctgaaatcatttatatcttcttctct	Protospacer
.   *.******** *************** ***  *

15. spacer 7.5|1836603|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to MT375521 (Pelagibacter phage Eistla EXVC0, complete genome) position: , mismatch: 9, identity: 0.743

cttagaacaaagagcagaattattaaaaaattctc	CRISPR spacer
cattaaacaaagagctaaattattaaaaaataaag	Protospacer
* * .********** .**************    

16. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

17. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

18. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

19. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

20. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017417 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

21. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

22. spacer 7.7|1836733|36|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 9, identity: 0.75

aaattgaacaggaaaatttaaaaaataaagaaaaaa	CRISPR spacer
ggtttttaagggcaaatttaaaaaatcaagaaaaaa	Protospacer
.. **  * .** ************* *********

23. spacer 7.15|1837270|34|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NC_019529 (Vibrio phage pVp-1, complete genome) position: , mismatch: 9, identity: 0.735

ctgttgattcaaataataaattagttggaagtag	CRISPR spacer
ctcacgtttcaaataataaagtagttggcaggct	Protospacer
**  .* ************* ******* **   

24. spacer 7.4|1836538|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047445 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8) position: , mismatch: 10, identity: 0.714

gaagtgcttttgtagaatatttaaagtattgaaaa	CRISPR spacer
atcttgctcttgtaaaatatttaaagtattaactt	Protospacer
.   ****.*****.***************.*   

25. spacer 7.4|1836538|35|NC_003454|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 10, identity: 0.714

gaagtgcttttgtagaatatttaaagtattgaaaa	CRISPR spacer
atcttgctcttgtaaaatatttaaagtattaactt	Protospacer
.   ****.*****.***************.*   

26. spacer 2.2|461452|59|NC_003454|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 13, identity: 0.78

-----cggtcaccatattattctggagcgggaaacgaggttcgaactcgcgacattcagc	CRISPR spacer
aactacgctcaccacat-----tggagcgggaaaccaggttcgaactggcgacattcagc	Protospacer
     ** ******.**     ************* *********** ************

27. spacer 2.2|461452|59|NC_003454|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 15, identity: 0.746

cggtcaccatattattctggagcgggaaacgaggttcgaactcgcgacattcagcttgg	CRISPR spacer
ggacgaacggggcttattggagcgggaaaccaggttcgaactggcgacattcagcttgg	Protospacer
 *.. * *. . . * .************* *********** ****************

28. spacer 2.2|461452|59|NC_003454|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 15, identity: 0.746

cggtcaccatattattctggagcgggaaacgaggttcgaactcgcgacattcagcttgg	CRISPR spacer
ggacgaacggggcttattggagcgggaaaccaggttcgaactggcgacattcagcttgg	Protospacer
 *.. * *. . . * .************* *********** ****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 153277 : 174314 20 Escherichia_phage(50.0%) tRNA,transposase,holin NA
DBSCAN-SWA_2 1634226 : 1641757 8 Prochlorococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage