CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_004307	Bifidobacterium longum NCC2705, complete sequence	3 crisprs	WYL,c2c9_V-U4,cas3,casR	0	1	1	0
NC_004943	Bifidobacterium longum NCC2705 plasmid pBLO1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_004307_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004307_1

745545-745628

Orphan

Consensus_repeat	Method
TCGTGAAGAACGTACGGTGAGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004307_1

>merge|NC_004307|1|745545-745628|CRISPRCasFinder
TCGTGAAGAACGTACGGTGAGTGACACTGAGCGTACGTTTTCCGCGAAATAAGGCCTCATCTCGTGAAGAACGTACGGTGAGCG

>NC_004307|1|1|745545-745628|CRISPRCasFinder
TCGTGAAGAACGTACGGTGAGTG	ACACTGAGCGTACGTTTTCCGCGAAATAAGGCCTCATC
TCGTGAAGAACGTACGGTGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004307.2\|WP_007053429.1\|736934_737438_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237787
NC_004307.2\|WP_021975717.1\|747589_749008_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NC_004307.2\|WP_011068217.1\|756143_757025_-\|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl\|CDD\|131546
NC_004307.2\|WP_014485734.1\|750564_750945_-\|hypothetical-protein	unknown	unknown	unknown
NC_004307.2\|WP_011068216.1\|755442_756081_-\|DUF3000-family-protein	unknown	unknown	gnl\|CDD\|378665
NC_004307.2\|WP_011068215.1\|754144_755446_-\|HRDC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176650
NC_004307.2\|WP_011068211.1\|745689_747108_-\|Na+/H+-antiporter-NhaA	unknown	unknown	gnl\|CDD\|377746
NC_004307.2\|WP_011068210.1\|744515_745457_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NC_004307.2\|WP_007052059.1\|749129_749831_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NC_004307.2\|WP_007052069.1\|735825_736698_+\|pyridoxamine-kinase	unknown	unknown	gnl\|CDD\|180840
NC_004307.2\|WP_007052063.1\|743804_744470_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NC_004307.2\|WP_011068214.1\|752710_754090_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NC_004307.2\|WP_007053431.1\|740784_742650_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|236185
NC_004307.2\|WP_011068208.1\|732816_733608_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_004307.2\|WP_007052064.1\|742745_743711_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|235652
NC_004307.2\|WP_007052070.1\|733956_735273_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NC_004307.2\|WP_011068209.1\|739027_740728_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|376794
NC_004307.2\|WP_007052067.1\|737495_739031_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NC_004307.2\|WP_011068213.1\|751060_752527_-\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238505
NC_004307.2\|WP_007052058.1\|749836_750460_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955

Protein	Function_ID	Function_description	E-value
NC_004307.2\|WP_007053429.1\|736934_737438_+\|YraN-family-protein	gnl\|CDD\|237787	PRK14681, PRK14681, hypothetical protein; Provisional.	6.04973e-104
NC_004307.2\|WP_021975717.1\|747589_749008_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NC_004307.2\|WP_011068217.1\|756143_757025_-\|pyruvate-formate-lyase-activating-protein	gnl\|CDD\|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	4.34227e-141
NC_004307.2\|WP_011068216.1\|755442_756081_-\|DUF3000-family-protein	gnl\|CDD\|378665	pfam11452, DUF3000, Protein of unknown function (DUF3000). This is a bacterial family of uncharacterized proteins.	1.16368e-14
NC_004307.2\|WP_011068215.1\|754144_755446_-\|HRDC-domain-containing-protein	gnl\|CDD\|176650	cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins. The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Egl is a component of an mRNA-binding complex which is required for oocyte specification. The Egl subfamily does not possess a completely conserved YX(3)D pattern at the ExoIII motif.	3.71065e-58
NC_004307.2\|WP_011068211.1\|745689_747108_-\|Na+/H+-antiporter-NhaA	gnl\|CDD\|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	4.26819e-125
NC_004307.2\|WP_011068210.1\|744515_745457_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	5.28356e-57
NC_004307.2\|WP_007052059.1\|749129_749831_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.07713e-117
NC_004307.2\|WP_007052069.1\|735825_736698_+\|pyridoxamine-kinase	gnl\|CDD\|180840	PRK07105, PRK07105, pyridoxamine kinase; Validated.	2.74587e-74
NC_004307.2\|WP_007052063.1\|743804_744470_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	8.2991e-17
NC_004307.2\|WP_011068214.1\|752710_754090_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.09277e-126
NC_004307.2\|WP_007053431.1\|740784_742650_+\|FAD-binding-protein	gnl\|CDD\|236185	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NC_004307.2\|WP_011068208.1\|732816_733608_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	6.16546e-110
NC_004307.2\|WP_007052064.1\|742745_743711_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	4.90715e-67
NC_004307.2\|WP_007052070.1\|733956_735273_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NC_004307.2\|WP_011068209.1\|739027_740728_+\|DNA-protecting-protein-DprA	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	9.36032e-83
NC_004307.2\|WP_007052067.1\|737495_739031_+\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	2.03935e-178
NC_004307.2\|WP_011068213.1\|751060_752527_-\|chloride-channel-protein	gnl\|CDD\|238505	cd01033, ClC_like, Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.	3.39025e-122
NC_004307.2\|WP_007052058.1\|749836_750460_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	3.09252e-105

>NC_004307.2|WP_011068210.1|744515_745457_-|TIGR00730-family-Rossman-fold-protein
MAKKQKKSKKNDGKKAAEAKNLAEVASKSAVVDDMEPLEATAANDAAALAAETATEAVATPVNSVDLEDASPLGDTYHRGPVILRGQMIPSDNTTANLLKSDQDTDWLHMDPWRVLRIQSEFVDGFGALAELGPAVSIFGSARTQRTESIYKAARRMGSQIAKRNIAVITGGGPGIMEAANRGAALAGGKSVGLGIELPHEQGLNQWVNLGMSFRYFFVRKTMFIKYSSGVIVCPGGFGTLDEMFELLTLVQTHKVANIPVVLYGKEYWQGLFDWLNGPVAEHGMISTIDPKLVTVTDDADEAVDVAVSAIVR
>NC_004307.2|WP_007052063.1|743804_744470_+|class-I-SAM-dependent-methyltransferase
MDRTQYTNLAKAWEFTEEHARERESDALTDTRTAADESGQLQGSAAQARLLGMLVRITGAASVIAVGTGSLVETLQLAHALDNKGLLTAVDSTAQGIALIRKAFAELQDETDTTLRAVNAPASVFLPRLNANDYDLIVVAGDAENYAATFAQASRLLRVHGVIVFTDVLALEDGQGGVINPADRSDKAIAMRELLTTVEDDEGFESTLTPDGTGLLIAYKK
>NC_004307.2|WP_007052064.1|742745_743711_+|4Fe-4S-dicluster-domain-containing-protein
MAEASNTTVTLQVHRFTPRPERAERARGGSPFAKKGSPFGGGSDSAARRRPRGKQWVQEYTIPARPSDTVLDCLLTIKRTVDPTLAFRYSCGHGMCGSDAVAINGTPTLLCTATIRDWAKQPGAMPEVDDEGFRHTGTEAEESDDSAENVANAAAAQNSAANGSLGVIELASLPGFPPQRDLIADIDPMLNQIRKLTPYLQADGVLATTAEGKVDVFEYLQNPEQLAKYELLSNCIACGVCEGACPVYAGGDAFIGPAALIWASRFVNDSRDTKAMERMDAIDTADGVAACQSVRACSRHCPRGIDVGEEMWQIVAKVRER
>NC_004307.2|WP_007053431.1|740784_742650_+|FAD-binding-protein
MSPKRLEDMYDAVIVGAGAAGLSAALGLLRSPEITELKEQGVDPKILVVSKLQPLRSHTGSAEGGIAASLGNVESDDWHWHYYDTIKGGDWLVDQDAAKLLAEYAPQTVINLERQGVAFSRTEDGHIAQRRFGGHTREFGGAPVKRAAYAADRIGHQILHALWQQCVAAGVEFAEEWYVTDLVLADDGKQAAGIVAFDTHSGKIQAIHARNVLLATGGAGRLFHTTSNSWDLTGDGMALTLAAGLQLEDIEFVQFHPTGLAHTGILLSEAARAEGGILRNADGEPFMERYAPEHKDLAARDVVSRSIMAEIDAGRGVADPKDPDGPKDCVWLDMTGIDPERMKEVLPQVVETIEQYANLDPAKDLVPIKPTAHYTMGGIPITTDGEVYRWADGAVQVVDGLFAAGECSCVSVHGANRLGGNSLLDACLFGTRAGQTMAARIAENPVDSPMADDSADDMLTDAADQAADSRKAELDELLAGPIDDSDDGVPTANPYQLMAQLGSVMEQALAVRCTAQTIDTALTQINGDITPVADTLRAHDKTAAFNQEVTAIWEVRHLIELAEVMLHASESRQESRGSMQRLDFPERDDEHFLAHSMVADDGSVSFKPVHITDYPPKKREY
>NC_004307.2|WP_011068209.1|739027_740728_+|DNA-protecting-protein-DprA
MSNATDIRQSGGTAGSVDHTDTSLAVSRTIPVPPTDTLYRAALTFCLDGADVMMYATLKGAENAESLWHALAQSHPSQPSEICGPALSRIDRMFVDGLTRWGRKASANAMRSFRNALACWHNRMMDLPSQDIIQLADWFTMDGTQWIIGPGHPCWPSQLADLSIRSDWAPPLCLWIKGDPRALTSCAKPVGIVGSRDVTEYGRYVAHTVAEQAAVAGHLVVSGGAMGTDAAAHWGALNALHGRMPANVGKTVAVFAGGLNHIGPMRNRTLFERIEAQGGALISELCPGTIPEARRFLLRNRIIAAMSSTLIVTQARLRSGALNTAGWACELLREVYAVPGDINQPCNAGCNKMIGDHRAMILCAATSTEDICHERHKPVMAAYPGISKSTGQDSSENEEAMEVPATTPLSPASSESSVSQESSQDSGHSKRSKTKHTQPTRTQSKDGPASATADSGNDKSKGEELPSSHQMPDLRVKPKPDPEKEAQQRIIIAKLPEMERTLVALIRECRKRHLIVTPDALLRVARETVPDEIPNIGTILELLGALELKGVIERDAGILKLSSRVG
>NC_004307.2|WP_007052067.1|737495_739031_+|YifB-family-Mg-chelatase-like-AAA-ATPase
MAIGSTLSVGLIGLKAFIVQVQAFISPGLPYFSIIGLPDASLSEARERVKSACQATGFGWPQTRVTVNMSPAAMPKRGSSHDLAIAASVLCAAGAIGHDCLEDTIVLGEVNLDGSVLPIHGLLPIMLHAEERGVRKMIVPHRNLDEASMVDGLDVVGVRHVGELIELMGGDATYTIPDTPVTDETTTDQSPTSHPNDCGDMNEVLGQEHAKWALQVAAAGGHNLIMTGPPGSGKTMLASRMPGIMCPLNEAEQLEVASIRSLCGILPQYGITDMPPFEAPHHTASTAALVGGGSGIAVPGAITRAHRGILFLDEAPEFSARALQTLREPLESGYVALSRSKGSTYYPASFQLIMAANPCPCGYYYGTGERCACREKDRIRYFSRLSGPILDRVDIQMAVPPVSRIAAQSEPIGESSAGIQARVIRARQVAKDRFRQYGWVCNAQASGKWLHANTSLKAMELVNRALSNHQLTLRGADRAMRLSWTLADLAGRVSPTEQDVHQGIEMRTRMT
>NC_004307.2|WP_007053429.1|736934_737438_+|YraN-family-protein
MNALPPTQPTTKSGIDAGLAFHQPMLASPDPQAMLPSERIAATMGDRNLTPKQFGALGEQYAAAWLEEHGWTTLSRNWHTRYGELDIVMLNPEYTVVFVEVKSRRSMHYGYPQEAITPAKQHNLRKAACDWLLDRRNRVPHSAVRFDVVTIVLRVGRPLVHHIENAF
>NC_004307.2|WP_007052069.1|735825_736698_+|pyridoxamine-kinase
MSDVTLYDRDPKYIPRVAAVHDMCGYGKCSLTAAIPILSAAGCDVCPVPTALFSAHTRYAVFTFHDTTDILSGYLDAWQKEDVELDGVYSGFLGSPDQVAIIQRLYREYPNALRLVDPVMGDAGEMYPTYTPELCEAMGALADGADVLMPNLTEASILTKRDYPGQDIDEATVNELLGALLELGAKNVVLKGIDHGDGKIVNYVASASTGVAGKIELAHEKLPYMIHGTGDAFASALCGAVMAGRGLAESAEIAGEFVRHAMVSTRNQPHFEDRGVSFELNLGELTDLVK
>NC_004307.2|WP_007052070.1|733956_735273_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MAENNKKYRFETLQLHVGQEQADPATDSRAVPIYATTSYVFHNFDHAEARFGLADPGNIYGRLTNTTQGVFEDRIAALEGGTAGLAVASGAAAVEYAVRNITQSGDHIVAAKNIYGGTFNLLRHTLPRDGITTTFVSAENPQEFEDAIQENTKLVYFETFGNPNADLPDFEAISEIAHKHHLPVIVDNTFATPYLFRPLEHGADVVVESATKFIGGHGTTLGGVIVEGGKFNWAEVPGKFPTLTEPDPSYHGLNFYEALGGAAFVTRVRAILLRDTGATLSPFAAFLLLQGTETLSLRVERHVQNALKVVEYLQTVPEVESVSHPSIPGRPDHDLYEKYFPNGAGSIFTFDIKGGKDAARVFIDNLHLFSLLANVADAKSLVIHPASTTHSQETLEELEDQGIHQGTIRLSIGTENIEDILDDLKGGFEALRASGLAK
>NC_004307.2|WP_011068208.1|732816_733608_-|ABC-transporter-ATP-binding-protein
MNVQNPSASRGIVIQAVDLVKNYGTGSNMVHALRGVNVSFERGKFTAIMGPSGSGKSTLMHTLAGLDSATSGHILFGGADLTRMDDKQLTLLRRHKIGFIFQSFNLLPMFTAEQNILMPLTLAGDKPDRAWFDLLVETLGLKQRLNHRPNELSGGQQQRVAIARALITKPKLVFADEPTGNLDSVSSAEVLGFLKRSVNELGQTIVMVTHDAVAASYADRALVFADGQIAADVNKPTADQMSELLMKEREAATMNVASARHSR
>NC_004307.2|WP_011068211.1|745689_747108_-|Na+/H+-antiporter-NhaA
MATTAGAKKGLWSTIRRIAASDRISGLIMLGFALTGLVLANLPATAHAFETVAETHLFIPYTNLDLPIGHWAQDGLLTIFFLTVGLELKQELTTGSLANPKAAAVPMLCAVGGMIAPPILFLAVTALFSQIGPGEPGTLILTTTGSSIPFSEMSHGWAVPTATDIAFSLAVLALFAKALPGSIRAFLMTLATVDDLLAIILIAVFFSSINAWYWFIGIAVCAAIWAYLVRLKKVPWIAVGIVGILAWIMMFEAGVHPTLAGVLVGLLTPSREMHGELSPRAERYANKLQPFSALLALPIFALFATGVHFESMSPLLLASPLVIALIVALVVGKPLGIITTAWLSTHVGGLKMAKGLRVRDMIPAAVACGIGFTVSFLIASLAYKNAELSAEARFGVLVASLIAAAISGVLLSRQSKRFEKTAAAAAADEEDDESIDGDGIGQPSHTTEPTTPTEHPGTLADGTASVEIDFRH
>NC_004307.2|WP_021975717.1|747589_749008_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MGRVVSYNEDVPRCTFCGKTEHQVRKLVAGPNASICDECIALCVDIISEERVKDAEVNSLSLPKPAQIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQLDGNNGHSGQTSKQAKQSVPTQTRATRRSNDPLADVEVAKSNILLLGPTGVGKTYLAQALARVMNVPFVITDATTLTEAGYVGDDVETVLQRLLQAADGDVSRAQHGIIYIDEIDKIARKSGENTSITRDVSGEGVQQALLKILEGTIASVPLEGTRKHKEQDVAQMDTRGILFICGGAFVGLTDIVRKRLGRRETGFGANWHDADMKDEELLEQVNADDLAEFGLLPEFIGRLPVTSVLKELTVDDLTAILTQPANALIKQYRKLFAVDGVDLQFTEQAIRAIADIAIKQGTGARGLRSIIERTLQDTMFQLPSLDDVRQVIVDKASVEGSSTPKLLREAVDVPQGRLKVAQSVLLDRVRTHEA
>NC_004307.2|WP_007052059.1|749129_749831_-|ATP-dependent-Clp-protease-proteolytic-subunit
MASEEAKFAARADRLAGRQGVAGFMPASARAAQPAPTNRYIMPQFVEKTPYGMKTQDAYSRLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPNRDVMMYINSPGGSMTAMTAIYDTMQYIKPDVQTVCLGQAASAAAILLASGTKGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEETLAKHTGQDVEKIRRDIEVDTFLTAPEAKEYGIVDEVLEHRQ
>NC_004307.2|WP_007052058.1|749836_750460_-|ATP-dependent-Clp-protease-proteolytic-subunit
MSNTFATLPVMAGDDVPAGPVDPIFNRLLKDRIIWMGEEVKDDMANRICAQLLMLAAEDPKKDIWLYINSPGGSITAGMAIYDTMQLIEPDVATVGLGMCASMGQFLLSSGTKGKRYLTSHARVLMHQPSGGIGGTATDVRINAELIMDMKKTMSELTAEQTGHTLEEIYRDNEYDHWFTAQEALDYGFVDKLVTTPDTIGNNQQGE
>NC_004307.2|WP_014485734.1|750564_750945_-|hypothetical-protein
MSENTEIRSALESLAAEPLTEQIDYYRKPFMVLWAAIQEAASDVAEDYDLPADMAQLWVAEQMRQVADSLVDRLAEKAVAHGASKSNVARAAGASPANAARRFPRLGDDAASQTRLLIDDVLDTLE
>NC_004307.2|WP_011068213.1|751060_752527_-|chloride-channel-protein
MQPTVTIKRLGWLAAATIVLGVLIGVGAGLLTLLLYGVEHVLLGYIEGPELSGPFGVPAARRAISVTVGLSIAGIIWYLLRHKTTAVPSVKKAVAGKRMPFWQTIAHVVLQIFIVGSGASIGREVAPRELGAMLAQRFCDLFHIEGVDGIDRRMVVAVAAGAGLGGVYDAPLAGMFFAVEILLVDVTIEKVAFGLGMSAIAAFVAVAIKGHHLFYDITAMQPESTPTLMVFALICGAACGVGGALFRKGSQWAEAHKPTGKAILWQMPLAGLITGLVAIVVPQVMGNGRAAAQLGFSTFIPETAGTAGAMQSASSAAASPWNLLTGGGNVSGSASGGGAGSGMASFWAMLQGGSGPSGSVMNAGFPLSQSNIWMLLGVLALTFVAKALVTLMTIRSGASGGVLQPGIALGSTLGAMLGLVWILMFPTDSVTACALIGAASLLSASQQAPLMAMCLVMELSEAPITFFVPVGMAVATSSLISKWLLSRK
>NC_004307.2|WP_011068214.1|752710_754090_-|trigger-factor
MKISVRNLEPTKVKLTVTVEPEELNPYLDAARKEIAKQVNVPGFRKGHVPGKIIDQRIGFAAVAGEAVNDAVPELYSKALEEKKIRPMAQPEFDVQDVPQSANDETKLKFTATVERRPDIELPEIDGLEIAISKPEVKDEDVDKRLEALRQRFGTLVGVDRPAAKGDFANIDLTAEIDGETVDSQEGVSYELGSNTMLDGLDEALDGLSAGEETTFEGTLEAGEHEGQKATVKVKVNSVKAEELPELNDEFASEASEFDTLDELKADIRKAAAQDAEGRQATEARDAFIAKLQEGLEIPVPKGVKANMVEEQLKGMTPDPEKATKEQKAQAEETVEKDLRDQMVLDALAEKLDVQVSQSDVFNFLASIAQQYGMDPNNFIQAIIKNGQLGSAVQEVGRSKGLLAGMRAVKFTADGEVVDLSAFLGEAAEDEESESVEAASAAAAVADELSAKDDAKDAE
>NC_004307.2|WP_011068215.1|754144_755446_-|HRDC-domain-containing-protein
MSDVRDTEPRLLKEPRGGVPDVTSTLDGYHRVCDALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKALFDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRALRSLNERVRIHTGTEQDKMFERYAPIQRAVKPKVWKQAIDRAMALKPTQWPTMPAPEQDENGVVNAPRSMRLWQQRHPERYDRLQRVRRVINRIAEDTRTPAEMIIKPQILRNLCWVGDPVEVDVETFLIEQGARNWQVKLIAPSVSGVIM
>NC_004307.2|WP_011068216.1|755442_756081_-|DUF3000-family-protein
MADIYAFPTGESNDGRPVRPQGVPDEVWAAVESVSTMKRIHDVRYREIPVPSTLADYGIGVEFEAGERALGDAFSAGLGSDAEPRIATGWIMMLYAHELRIDWDSNWRCVAFARLPLETAENDSLTPGMYWDDMCDYFDGIEPDSVSGTVTVTQNTAFGSMAGSTSAGCEIRVSWTPLDGTGPDGTMDAGAQVRSWAAFIRSTIRFEEDDAS
>NC_004307.2|WP_011068217.1|756143_757025_-|pyruvate-formate-lyase-activating-protein
MPATPTFRTTTRHMLKESKTYASQTLMGGLSGFESPIGLDRRDRLSALKSGDIGFVHSWDINTSVDGPGTRMTVFMSGCPLRCQYCQNPDTWKMRDGKPVYLDAMIKKVDRYKDLFKATHGGITFSGGESMMQPAFVSRVFHAAKEMGVHTCLDTSGFLNTNYTDEMLEDIDLCLLDVKSGDEETYHKVTGGTLQPTIDFGQRLAKAGKKIWVRFVLVPGLTDSEENVENVAKICESFGDAVEHIDVLGFHQLGRPKWHELRIPYPLENQKGPNAATRERVANQFKDHGFTVY

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Crispr_ID: NC_004307_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004307_2

1337044-1337128

Orphan

Consensus_repeat	Method
AAGGCTCCCGCTGGCGGGAGCTGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004307_2

>merge|NC_004307|2|1337044-1337128|CRISPRCasFinder
AAGGCTCCCGCTGGCGGGAGCTGTCTAACGGATTTGAACTGGAGAATTTCCCTACAAATAAGTGCTCCCGCTGGCGGGAGCTGTC

>NC_004307|2|2|1337044-1337128|CRISPRCasFinder
AAGGCTCCCGCTGGCGGGAGCTGTC	TAACGGATTTGAACTGGAGAATTTCCCTACAAATA
AGTGCTCCCGCTGGCGGGAGCTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_004307.2\|WP_007051529.1\|1335863_1336928_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_004307.2\|WP_007051536.1\|1341701_1342331_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NC_004307.2\|WP_007051521.1\|1321915_1323442_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173859
NC_004307.2\|WP_003828150.1\|1335538_1335853_-\|DUF2469-domain-containing-protein	unknown	unknown	gnl\|CDD\|313765
NC_004307.2\|WP_007056503.1\|1329404_1331474_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237171
NC_004307.2\|WP_007051542.1\|1347947_1349627_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_004307.2\|WP_011068469.1\|1326546_1328586_-\|hypothetical-protein	unknown	unknown	unknown
NC_004307.2\|WP_007051530.1\|1337223_1338723_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NC_004307.2\|WP_007051540.1\|1346979_1347714_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NC_004307.2\|WP_007051520.1\|1321167_1321854_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_004307.2\|WP_007051524.1\|1328707_1329097_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|181719
NC_004307.2\|WP_011068473.1\|1340293_1340593_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_004307.2\|WP_007054756.1\|1323585_1326321_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|380147
NC_004307.2\|WP_007054746.1\|1342327_1343752_-\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NC_004307.2\|WP_007054751.1\|1338748_1340290_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_004307.2\|WP_007051538.1\|1343794_1344076_-\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224848
NC_004307.2\|WP_007051535.1\|1340759_1341608_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349969
NC_004307.2\|WP_011068474.1\|1344187_1346896_+\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319774
NC_004307.2\|WP_007051527.1\|1331679_1333293_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235967
NC_004307.2\|WP_007054753.1\|1333511_1335365_-\|histidine-type-phosphatase	unknown	unknown	gnl\|CDD\|132717

Protein	Function_ID	Function_description	E-value
NC_004307.2\|WP_007051529.1\|1335863_1336928_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.07656e-13
NC_004307.2\|WP_007051536.1\|1341701_1342331_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	0.00689965
NC_004307.2\|WP_007051521.1\|1321915_1323442_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173859	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_004307.2\|WP_003828150.1\|1335538_1335853_-\|DUF2469-domain-containing-protein	gnl\|CDD\|313765	pfam10611, DUF2469, Protein of unknown function (DUF2469). Member proteins often found in Actinomycetes clustered with signal peptidase and/or RNAse-HII.	1.30549e-58
NC_004307.2\|WP_007051542.1\|1347947_1349627_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_004307.2\|WP_007056503.1\|1329404_1331474_-\|transcription-termination-factor-Rho	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
NC_004307.2\|WP_007051530.1\|1337223_1338723_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NC_004307.2\|WP_007051540.1\|1346979_1347714_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	2.56303e-80
NC_004307.2\|WP_007051520.1\|1321167_1321854_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.51632e-96
NC_004307.2\|WP_007051524.1\|1328707_1329097_-\|chorismate-mutase	gnl\|CDD\|181719	PRK09239, PRK09239, chorismate mutase; Provisional.	9.5939e-49
NC_004307.2\|WP_011068473.1\|1340293_1340593_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	3.21183e-29
NC_004307.2\|WP_007054756.1\|1323585_1326321_+\|valine--tRNA-ligase	gnl\|CDD\|380147	NF000540, alt_ValS, valine--tRNA ligase.	0
NC_004307.2\|WP_007054746.1\|1342327_1343752_-\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	1.22195e-106
NC_004307.2\|WP_007054751.1\|1338748_1340290_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_004307.2\|WP_007051538.1\|1343794_1344076_-\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|224848	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown].	2.43596e-30
NC_004307.2\|WP_007051535.1\|1340759_1341608_-\|RNA-methyltransferase	gnl\|CDD\|349969	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	4.64827e-41
NC_004307.2\|WP_011068474.1\|1344187_1346896_+\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	4.91138e-153
NC_004307.2\|WP_007051527.1\|1331679_1333293_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|235967	PRK07208, PRK07208, hypothetical protein; Provisional.	0
NC_004307.2\|WP_007054753.1\|1333511_1335365_-\|histidine-type-phosphatase	gnl\|CDD\|132717	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord.	2.78266e-06

>NC_004307.2|WP_007051529.1|1335863_1336928_-|GNAT-family-N-acetyltransferase
MTATNETLSMATEAQLKRDLPQSIVIPPIRGEMVHLRPATVEDLPRLDELDAFYGASKITGKDAVTERAIVHTWVRRSQAWEAGQAPAESGVGDPESRRTIAWAVLTDADHDDDGQLDAASTDNVIGMIFLIDIDGWSKSARIQIILGREYRGRGYSRDAMPRVMTYGFAPEPAGLGMHRIWVSVPEKNSRSISVYQSLGFVPSGTSRDALWDAENNKYQDLIVMDTLADEYDPIRSLDAFGMHLIEDNPGVKEALSAREHSIAIQQNKPEPEPAQRGEAAGATTSDVQSQAQTPAAAQPVEPQAEHHDDTQKNTRHSLEEESNWPYGQAERKPSKEAWWRTLGRGRKRDTESE
>NC_004307.2|WP_003828150.1|1335538_1335853_-|DUF2469-domain-containing-protein
MSAEDLDNYETDAELALYREYRDVIKLFTYVVETERRFYLANKVDFNVRSAGQDVYFDVQLTDAWVWDVYRSSRFVKSVRIVTFKDVNVEEVQKTDIDIPDDIH
>NC_004307.2|WP_007054753.1|1333511_1335365_-|histidine-type-phosphatase
MQQGLKGSIAGVVAAATLLAGGILTVPHAMALEADGQYYSSKQPYVAPSEATTASYSQAPEGYETVYTESMARHGSRGLSSYKYDALLMKMAEAAEADNGFKSDAIKSEFMKNLKAITAANVENGYGMLTGQGADQHQGIGARAYERNKTLFDNAAKDGGKIAYQSSGEARATESGENFARGFNAASNNKLANSTVTPADPAGTGEAAAFDKTPNTLYFHKSENPDGTEKTGEAKQRADDYQNFVENDAIIAGAEQTIAENEDVKTASHDLLSQIFTDDFLAKLADGTYAWYNTVDGTKGGEANCAPGADPSKDADACGAAKKKIASEYDAAMDLYNLYIIAADMENENTGSHTFDFNQYFQGEQADDAKLFAWALDAEDFYEKGPSYAGQDETYTIAQPLLDDFFSSIDERVNGGSTVATFRFAHAETMMPFAALLGLPGSTQQAAASTTDVYTYANNEWRGESVTPMAANVQWDVAVKSGNDPKTGRAYTPLVRMLYNEQEIAFRSECTPIADGSTWYKLTELKSCLASDHQTLGDDAHLTDDSTTQPGTGPNTGEGTSTTPNNNGAGTHQPSNTQANGTENELSRTGVAVTGVAGIMMLLALAGISLNLWKVRR
>NC_004307.2|WP_007051527.1|1331679_1333293_-|NAD(P)/FAD-dependent-oxidoreductase
MTDKQSVVIIGGGPAGLTAAWELIKDGGADKYDVTVLEGTREFGGISRTVKHNGNRMDIGGHRFFSKDERIMDWWKTVLPLQGAPSYDDKKLGRDHDMEPGGPDPETEDKVMLKRHRVSRIFWNRHFFDYPISLSPNTLKAMGFKLTMVAGFSYLKSMFHKLPEDNLENFYINRFGRKLYSMFFEGYTEKLWGRHPSQISADWGAQRVKGLSIMGVLKNAFQKLLPKKRSNAEVETSLIEEFWYPKYGPGQLWETVESNCEAAGVKVLTDARVVEVRQTDGAVSSVVYEDSEGNRTELSGDQFISSMPVKDLVNAIDAAGADPEAVDSKPAPADMTEVANGLPYRDFVTVGLLVKHLKLKNTTSIPTLGNPPIVPDCWIYVQDPGYKVGRLQIFNNWSPYLVKDVDDTVWIGLEYFCEEGDSFWNMSEEDVTKFAISELTRMRVINGPDEVIDSHRERVRKAYPAYFDTYEHMDELIEYLDGFGNLYCVGRNGQHRYNNMDHSMATAMEAVGNIKTGKTSKKNVWSVNTEKSYHEEK
>NC_004307.2|WP_007056503.1|1329404_1331474_-|transcription-termination-factor-Rho
MANSQNLEDMKLPELKELAKQMGLRGTSTMRKPELLATLQAARNGGEPPAGVTVRAPKAAKTAKVVKAPQSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDETEPRRTRRKAADDAASEPRAARRRRDDDQPDFARRKPRKKADEAGDLLATLDLGDAAPTERRRERHEDVEVPLIRRVRDDEDEQPRRRRRTAENSEETVRDLDDILATLPTQKHEETSEDGEQNDDHEFVRRNRRDRSDRNDRDTRNDRSDRRNRRMRGRDRDNADDDRRYDDRDNRSDRNDRDSRREEPQEDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRAPREGDRRNQRQKFVPLQAIDSINGQSVEEALNRPQFSKLTPLYPQERLKQETAPNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANSIAANNPEVHLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAVERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDINASGTRREELITNPQELPIIYRLRRLLGGMEPEQAYQTLVPRLKKTATNRDFLAAIVQQANTGNAVNGN
>NC_004307.2|WP_007051524.1|1328707_1329097_-|chorismate-mutase
MSETSSDWQRTTIDSAQAAAHPETAQAVARIKALRQTIDNIDSAVIALLAERFKATSQVGVLKANAGFAPEDTKREDYQIERLHRIAIDAGLDPEIAEMYREFVVTEAKKRHQRIADAGGDPGVLDVFA
>NC_004307.2|WP_011068469.1|1326546_1328586_-|hypothetical-protein
MRCGAALVSCALCVASILGGAWMSRPTPVDYGPVLATASDMYAVTDAEGEPVRWYVVGKGGAGNGASADSGTSKVSRIPASAATLPWKVSVTYSLDGPNVEANEVAGASGLIGVYIDIKPQTKEANRTIPVVAFTVPTQVADDVSADNSITVTTQGSNAVVAAAGKAATGLEFSCYMNAKDFSMSSVALAVLPSNSSSPAVGANPDAANAANAAAQPAADTDVAQLTASAATLVDSLTDAGSGEQQQLIEQLQTLRDNERALNKSVVAERETAHKRTFEDYMAAYVGSYTTHLSGSIGTSTQLPALMGTAGELSGDTPLAQAVLDLANAVNNVSAAHQHAGAVDALDEVIRRIQQQGTTGLVDDLIAEASEEATQGSKQYADGQSQLSAAMIPYSMKYTDVYTANLSALTGGTSSGATAYESQAIAETNGSDELADAQSKVDAAMSTLATASEHTGKATALRQIVLRFSDQFEGGASSASGSDGDGSSGDVSSDPVTEAQALTGLVDSQSQSFYGKTRVAQAKRKADAARKQAKAAQQQQSQHSKASLVDDTMSMSAGDVMNYAGGLTSAIGGGDKSDSSKSAGSGTNDSAKSSDTGDSGNGKASDASDSGNNLDTAPVLFGFGTGGTLFKHDMNALINETVKISDAGTLLAQAVAQLDSPNTQQKTAETRYLIVIPTV
>NC_004307.2|WP_007054756.1|1323585_1326321_+|valine--tRNA-ligase
MTEGKSIINANLTPLPDKVGVDGLEDKWRTVWDEDGTYKFRNTRDRKAVYSIDTPPPTVSGSLHVGHVFSYTHTDVIARYKRMRGYDVFYPMGWDDNGLPTERRVQNYYGVRVDVSLPYDPDFKPPFEGTDGKKIDAKDQVPISRKNFIELCERLTAQDEKLFEALWRKLGLSIDWSQTYHTIGQHPQRVAQKAFLRNLARGEAYQQDAPGLWDVTFQTAVAQAELESREYPGFYHKVAFRFEDGTPIYIETTRPELLAACTSLIANPNDERYKQYFGQYVYSPLFKVKVPILAHPAAEMDKGAGIAMCCTFGDVTDVEWWRDLKLPTRPIIQRNGRIVMDTPDWIEDPAGREVFAETAGKTTFSARKIIVDKLRESGDLDGEPTPTKRMTNFYEKGDKPLEIVTSRQWYLKNGGTDAKLNAELIERGKELEFHPDFMRVRYENWVHGLNGDWLISRQRFFGVPFPLWYPVNASGEPDYDHPITPSEDRLPIDPTIDVPEGYDESQRDVPGGFTAEKDIMDTWATSSLTPQIVTHWAEPDEASKALFASTFPMDLRPQGQDIIRTWLFSTVDRAHLENKCLPWAHATLSGWILDPDHKKMSKSKGNVVVPNEPIEKFGADAVRYWAAAARLGLDATYDIGQMKIGRRLAIKLLNATKFALAIGREDENHHVGAAAEAAWNPADVTEPLDRAAMAKLALVVRQATEALESYEHSKALEVIESYFWQFCDDYIELVKNRAYGTPDEHGNVPSEKAVKSARTALGLGLDAFARLLAPYLPYATEEVWSWMHAGSGSVHRAAWPVVDPYVEAATGASPELLTWAGKAVEQLRKIKSEAKVSMKTPILSVALSAASEGVEAIHAALGDIAQAGRVVGKFDLVAKHAEESAAEGTPETEVAVEASELGEPPAKKPKH
>NC_004307.2|WP_007051521.1|1321915_1323442_+|ABC-transporter-substrate-binding-protein
MQHSKRDNTWSKWGIFLGVAVALGALVVVGWTFMQNRFQPGSSLDADVTIGIDDMPQSLDIRSDSSAAAERLLVDNVYETLVTVDQDNKLQPGLATSWKTSDDGLTVTLTLQSGVTFSNGHTLDASDAVWSLQQNVTNKVADVDELGDLASVANPNATTVVITLAKPNPTLLRALSGRLGIVYDSESSSADYQRKAIGSGPFTVADFQPGHSLKLARSDTYHGTKAASNVVEFMQYSDADALSKALTDGSLDMAAPVSASTATGLNGKDGLTVKEGATTDKVLLAYNNGTDSLLSDEQARKAFRYQIDAAGIASAQPDAAGALGGPISLLEPGYEDLTGLYPHDENQAGQMFSYFGAQYLTTVNLVVPEEYRSLAETIKQQIERQPRPTVNLEVLSDEDYAKRIKDGKWELTVMSMDGTDDAGIFADPDSMFHYDHTEAQQAYADARAATNDADYEARMKAYARLISEDAASDWLYTRKCFTVASTKVSGYPTSMINRRMPLAGLTVK
>NC_004307.2|WP_007051520.1|1321167_1321854_+|endonuclease-III
MRETKSARLTRMHDEYDILRQVIPAPACALHFSNPLELLIATVLSAQTTDKRVNTVTPELFATYPTARDLAAANPAQVEDIIHPLGFYRSKTQHLIGLATALDERFGGVVPRTMDELTSLPGVGRKTANVVLGNAFDIPGFPVDTHVMRVTGRLRWRSDWRSAHPDPVKIEKEITSCFPPEEWTNLSHRLILFGRATCHARTPDCANCPLSDTCPSYAPPAGKSTSKR
>NC_004307.2|WP_007051530.1|1337223_1338723_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MAEKLMKYADATKKYDVVFGLETHVELSTNTKLFCPAHIEFGGEPNTELTPVSLGLPGSLPVINKTAVDYAIKLGLALHCEIAEWSQFARKNYFYPDMPRDYQISQYDKPTNGNGYLDVELEDGTVFRVPIERAHIEDDAGKNTHVGGADGRIEGADHSLVDYNRAGVPLIEIVTKPIEGAGDRAPEIAGAYVRAIRDIVRALNISHARMEQGNMRADVNVSLRPSPDAPYGTRSETKNVNSFRGIEKTIQYEIRRQAARLDDGKEILQETRHWDEATQTTAGGRLKSDADDYRYFPDPDLVMLHITKEHIEEMKAQMPEMPRERRNRLKSEWGLSDLQMRDILNADALDLIEETVKAGAKAAGARKWWLGELSREANAKGVSLEELPITPADVAEVEKLIASGKLNDKLAKQTVEGVLKGEGTPDEVVKKHDYKIVEDNGAIEAAVDAAFEANPDVVEKLKSGNMKPMGVIIGAVMKATRGQADAKAVTKVVMGKIKG
>NC_004307.2|WP_007054751.1|1338748_1340290_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSNETATLVKLSAAEQAAAVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFDAKSAEDKAALPELAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGGHDKRDSTSIPEGPRPMVAAAREGAKRDLKGMKVGLIKELGGDGFQPGVEARFNEAVDKLKEMGAEVVEVSVPHIGYSLGAYYIIMPSEVSSNLARYDGMRYGLRVMPPTGVPQTAANMMAYTREAGFGDEVKRRIILGTYALSAGYYDAWYGSAQKVRTLIIEDFKKAFEQVDVLVAPTSPSTAFKFGEKMDDPLAMYMNDIATIPANLAGVPAMSIPAGLSDDGLPVGFQFIAPQQRDEVMYKPAAALEAALEDSWNGPIWNDLKTPWLDGLGK
>NC_004307.2|WP_011068473.1|1340293_1340593_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPTFSREEIVHLGDLARIALTDEEITRLQGELNVIADSINKVQEVASDDVPPTANPVPLEAYLRPDVAETPLTQEEALAGGPKTEAGMFVAPRILGSEE
>NC_004307.2|WP_007051535.1|1340759_1341608_-|RNA-methyltransferase
MHAPNQISLAAKASGEPEFREIGLGPWSETHPGEPRPDDPTSSNYDGRFDSVLLNDGDRRNVLDRYRYWTVAAIKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELYQHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAIHAHDVAVDGDNKHLHELLAEIDACDARIKELQAARVIALDIIPGAVPMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSINAGAAAAVAMHAWIAQHAVSGV
>NC_004307.2|WP_007051536.1|1341701_1342331_-|orotate-phosphoribosyltransferase
MTESGFRPTGTPDLAVAKSHNDFAMLEPREQLATLLKEHVVGRPFSELAAVTFDHRAATVMGHVLIDALEDAGYSIDDFDAVGALTAASVPMVSAMIQAAASRGEDLDGFVMDFVYPSIKGPSIEGRRVVLLDAWLSEKSYVQTSSLVTLRNGNELSLDFGIVEQLGAKVVAIASLVGGGAKDINVVNPSTGDEQTLPFIQVFDESELR
>NC_004307.2|WP_007054746.1|1342327_1343752_-|DNA-recombination-protein-RmuC
MFEQIGTVIIVIVVLVVGAGLGLFAGFVLGRHKGQEMARGVKSEELEEAKTSLENARFENAELSARNAAAQAQIEGVNQQLAFAKSQLAQAQQAEQIRIQQERERAAAEAERKRQADAQAAEAKRAEQEARLKEQSKVLEALAPVAKNLDTLQNKVTQIEEGRKREMGALGAQLKGLNDQQARLDKETSSLSAALRNNKVRGAWGEAQLKNIVESAGLLEHVDFDTQVVVTDADGRTLRPDMIVHLPGGKTIPIDAKVPYADYQRACEIPDTASPEDIARRDDLLRSHAKALREHVRALGEKAYWNAFDVAPDFVVAFIPNEALLQAALEADPTLMDDAFSRKVALTSPVTLWAVLKSVAYAWQQQSLTDDAKQLFDLSRELYERFSTLGDYAIKLGTQITKTVSAYNKFASSLERRVLPTARKLQKIEPTKIIEEVPIIESDKGNVSELSAPEVVPADEGDTHLTASGDSLES
>NC_004307.2|WP_007051538.1|1343794_1344076_-|metal-sensitive-transcriptional-regulator
MHGYDEDKAKVIARLRRIEGQVRAITQMVEDDKYCIDILTQISASNSALKSVALLLLDDHLNHCVRQASIQGGEVADEKLAEASAAIARLVKS
>NC_004307.2|WP_011068474.1|1344187_1346896_+|HAD-IC-family-P-type-ATPase
MELSIFSAATALIAAAALTWLVLRFFFGTQKATAGAMDASGERQSATITVKGGYSPAVISMRTGTPITLTFDRQETGECTSHVVFADLGLDAMLPGNATTDVELPALPAGEYPFACGMNMVHGLLRVEGEESKDGADKDGLRPRADGSAEAEGVSPSDLRVGAPVVDAAEAERREAAERANEIKALTKLVIVGAVLTLPVFAVTMLHMANPALAPHWMVNPWLQAILITPVMFYCGRPIHTVGFPALAHRSPDMNSLVSLGTSAAYLYSLVTCIAPWVFPEGSREPYFESVGVVITLVLVGRLLETKAREGTGKAVQSLIKLRPRTAHKLNATSADNVDGIEWRNPAHFTDTDIDAIATGDLLVVKNGERVPTDGVIVAGEARIDESMITGESKPVSKTAGDPVTGATVLLKGGCVMRATQVGADTVLSQIAAMVARAQATKAPVQQLADKIARYFVPAVMIIAIWTFAIWRSLGPAPQLAHALVTAVSVLIIACPCALGLATPLSVTVSLGLGATNGVLVTSAKALEQARRIGTVVFDKTGTITRGVVDAAADWDKPSYEQDTVKEGSREAIAALRARGIRTVMLSGDKAEVAGRIAREVGIDTVICEVKPDGKAYWIAKLQRERDEAAAKSAYGTSRTAAQSRTLIAMVGDGINDAPALAQADLGIAIGTGTDVAMQSADVTLMSGDLRGVIKTINLSNATMRNIRENLGWAFGYNVIGIPVAAGVLYPFTGWLLSPMIAGLAMALSSVCLVLNANRLHGANINVGAADGPAGSGSSTADVESAGSAESANAANITGSATSNAPHEPTVIIDDRTTLNQTNHVSDQSNNPTNKENTMDTGMHMHHTAPADGETATDPVCGMTVAVNADAITREYEGKSYYFCGEHCATNFMKAPQVFLEQ
>NC_004307.2|WP_007051540.1|1346979_1347714_-|aquaporin-family-protein
MDYPLFTKLAAEFFGTAILMIFGNGSVANVELKNTKGHHAGWLNIAMGYGFGVMFPVLMFGSVSGAHINPAMTIAQAVNGLFPWSDVLPYIVAQLLGALLGQLIVYITYYPHYKETEDAEAILGTFCTTDADNQKVNYFLNEMFGTLVLVFGALCCLSLAWGKQDYAAASIVVGFIVWGLVTSMGGPTGPGLNPARDLMPRLLHAILPIPHKGSSRWGEAWIPVVAPIVGAIIGAWLFVFFFAS
>NC_004307.2|WP_007051542.1|1347947_1349627_-|phosphoenolpyruvate--protein-phosphotransferase
MRTIQGVSVSAGIAIGTVRVLAAVDYAVERRLIDDPQAEMDRFRAARDTAVAQLKQLRDNVAAEFGENKAELFDAHRLMLQDPDYAECVEGLIAQDKVNAEFAVKSAAEQFAAMFAAMDSSTMQARAADVKDVSRRVMNVLQGKRDSTAQDGSVQGDAVQNGIVQNGIAQNGESHIIFAEDLAPSDTAQLDRAKVLGLVTAKGSANSHTAILARTMGLPAITGIGDAFDPADDGHVAVIDGTSGAVFVDPDEATLTEYRRRKAEAEEHLSLLRKLKGKPTETKSGQRVHLYANISRPSDAAAVLANDAEGIGLFRSEFLYLEREDWPTEEFQFDAYGQVAQEMGDRPVIIRTLDIGADKQVDYFNLSHEDNPALGYRAIRICLTRPEIFKVQLRALLRASAYGNIAIMLPMITSVQEVRDAKRILEEAKSELRGERIDFNESIQIGVMIETPASVIMADELAAEVDFFSIGTNDLTQYTLACDRQNPSLERFADPHSPAVLRMIQMTIEAAHRHGIWCGICGELGADLSLTDTFLRLGIDELSVSPTSVLPLRNVIRNH

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Crispr_ID: NC_004307_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004307_3

1462998-1463366

Orphan

Consensus_repeat	Method
TGCGGTTGATTCCACGGGTCACCG	CRISPRCasFinder

6 spacers

The CRISPR arrays of NC_004307_3

>merge|NC_004307|3|1462998-1463366|CRISPRCasFinder
TGCGGTTGATTCCACGGGTCACCGTGCGGGGTGGCCTGCGGAGCCGATTGTGGAACTGCCTGCGGTTGATTCCACGGGTCATCGCCGGCAGCCGGCTGCGGAACCGATTGGGGCTGGTTCCACGGGTCATCGCCCGACATATTGCCCGACACTGTCTGAGGAACCGAAGAAGCCGGAGTCTGGGACTGAGGCTGATTCCACGGGTCGTCTCCTGGCTGCGGAGCCGCCTGAGCATGGTTCCCCTGCGGTTGATTCCACGGATCATCGTGAGGAGACTGCTGATATGGCTGGTTCCACGGGTCGGCTTCGGCCGGTTGCGACGCCGGTGAGACCGCGGCCTGAGACTGCGTCTGATTCCATGGATCGTCG

>NC_004307|3|3|1462998-1463366|CRISPRCasFinder
TGCGGTTGATTCCACGGGTCACCG	TGCGGGGTGGCCTGCGGAGCCGATTGTGGAACTGCC
TGCGGTTGATTCCACGGGTCATCG	CCGGCAGCCGGCTGCGGAACCGAT
TGGGGCTGGTTCCACGGGTCATCG	CCCGACATATTGCCCGACACTGTCTGAGGAACCGAAGAAGCCGGAGTCTGGGAC
TGAGGCTGATTCCACGGGTCGTCT	CCTGGCTGCGGAGCCGCCTGAGCATGGTTCCCC
TGCGGTTGATTCCACGGATCATCG	TGAGGAGACTGCTGA
TATGGCTGGTTCCACGGGTCGGCT	TCGGCCGGTTGCGACGCCGGTGAGACCGCGGCCTGAGAC
TGCGTCTGATTCCATGGATCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004307.2\|WP_007051626.1\|1468258_1468636_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NC_004307.2\|WP_007051614.1\|1455894_1456989_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236329
NC_004307.2\|WP_007051615.1\|1457070_1457637_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|235843
NC_004307.2\|WP_007051621.1\|1462119_1462722_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_004307.2\|WP_007057587.1\|1466652_1467783_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237021
NC_004307.2\|WP_007051631.1\|1472715_1473441_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|182775
NC_004307.2\|WP_164928303.1\|1469812_1470469_-\|Flp-pilus-assembly-protein-TadB	unknown	unknown	gnl\|CDD\|227300
NC_004307.2\|WP_162010160.1\|1460329_1460626_-\|hypothetical-protein	unknown	unknown	unknown
NC_004307.2\|WP_015512506.1\|1455106_1455727_-\|hypothetical-protein	unknown	unknown	unknown
NC_004307.2\|WP_015713236.1\|1453523_1455104_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277329
NC_004307.2\|WP_007051616.1\|1457692_1458457_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_004307.2\|WP_065453223.1\|1450918_1452835_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NC_004307.2\|WP_007051623.1\|1465855_1466455_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_004307.2\|WP_013410434.1\|1467831_1468209_-\|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl\|CDD\|274799
NC_004307.2\|WP_007051628.1\|1469213_1469816_-\|Flp-pilus-assembly-protein-TadC	unknown	unknown	unknown
NC_004307.2\|WP_007054687.1\|1458817_1460101_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379306
NC_004307.2\|WP_011068518.1\|1460989_1462123_+\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NC_004307.2\|WP_011068523.1\|1471542_1472493_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|274798
NC_004307.2\|WP_007051629.1\|1470468_1471536_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|200328
NC_004307.2\|WP_007051627.1\|1468641_1468929_-\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429

Protein	Function_ID	Function_description	E-value
NC_004307.2\|WP_007051626.1\|1468258_1468636_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	7.94662e-07
NC_004307.2\|WP_007051614.1\|1455894_1456989_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|236329	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.	0
NC_004307.2\|WP_007051623.1\|1465855_1466455_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.0756e-15
NC_004307.2\|WP_007051621.1\|1462119_1462722_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	4.73611e-118
NC_004307.2\|WP_007057587.1\|1466652_1467783_-\|hypothetical-protein	gnl\|CDD\|237021	PRK11914, PRK11914, diacylglycerol kinase; Reviewed.	6.48304e-31
NC_004307.2\|WP_007051631.1\|1472715_1473441_-\|DedA-family-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.7339e-45
NC_004307.2\|WP_164928303.1\|1469812_1470469_-\|Flp-pilus-assembly-protein-TadB	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	0.001225
NC_004307.2\|WP_015713236.1\|1453523_1455104_+\|metallophosphoesterase-family-protein	gnl\|CDD\|277329	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.9405e-33
NC_004307.2\|WP_007051616.1\|1457692_1458457_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	3.11844e-146
NC_004307.2\|WP_065453223.1\|1450918_1452835_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NC_004307.2\|WP_007051615.1\|1457070_1457637_-\|ACT-domain-containing-protein	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	1.06061e-66
NC_004307.2\|WP_007054687.1\|1458817_1460101_-\|ATP-binding-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	1.02552e-37
NC_004307.2\|WP_013410434.1\|1467831_1468209_-\|flp-pilus-assembly-TadE/G-like-family-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	8.00327e-24
NC_004307.2\|WP_011068518.1\|1460989_1462123_+\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	3.84989e-84
NC_004307.2\|WP_011068523.1\|1471542_1472493_-\|P-loop-NTPase	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	8.26831e-11
NC_004307.2\|WP_007051629.1\|1470468_1471536_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	3.56402e-90
NC_004307.2\|WP_007051627.1\|1468641_1468929_-\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	3.09108e-14

>NC_004307.2|WP_007051621.1|1462119_1462722_-|recombination-protein-RecR
MALAYDGAIQRLIDAFGRLPGIGPKGAQRIAFYMLSAPEDEARDLAEAIEEVKAKIRFCDICGNVCESSPCPVCADPRRDRSVICVVEEPKDVMSIERTREYHGLYHVLGGAINPMANVGPADLRIPGLLKRLEGDEVKEVIMALDPNIEGEATTSYLTQLLRPVGVKVTRLASGLPVGSDLEYADEITLGRALAGRREA
>NC_004307.2|WP_011068518.1|1460989_1462123_+|class-C-sortase
MALLHRRSTSKRASQKMWENNAAMPDDASANDNVSSARPEPAAFVPTPFDEVIDISDLVAERRRLQRNLWAMRIITIVLLIAAIAVACFPLALQFESDRNLAATTATTAKEVAGWPYPQAEDKLTAARAYNKKLAESGQPILGEAVDPFAAAQGGSQASGEDSASKKDKEYQSLLNTGNGVMGTIKVPKQSINLPFYHGTSEEALASGAGHLYGTSLPVGGKSTHSVITGHRGLVEALMFTRLDEVKEGDFFYIEVMGETLGYKVDRISVILPDDTSKLKIVPGEDRATLMTCTPYGVNTHRLLISGHRVAIPMPAPEPNDVLDARNIALGVGLGILAAGLFIIWLARRHKAARIIRHGAFWPWMRRKGESANDTLA
>NC_004307.2|WP_162010160.1|1460329_1460626_-|hypothetical-protein
MHKEGICYLDKRGAIAVFVDVGSSSSRWFRRREGRSRVFCFPTKEMNHEERLSKSSFAGLPNVKGAVAEDARITDSPLRSELASVIREKMALSGHLSF
>NC_004307.2|WP_007054687.1|1458817_1460101_-|ATP-binding-protein
MAVESSEIQRGEYLPRVADGLLTQALQSSGAVQIKGPKWCGKTATAERQSASQVFMQDPDRSATLLALADTKPSLILRGEEPRLIDEWQMAPQLWDAVRFAIDRGRGRGRFILTGSATPQQEPAHSGVGRIARLTMRTMSLFESQESTGVVSLGELFDGNHDVSGFSDFDIENTAFALCRGGWPEAVVESRVNVALRMAADYVEELLDSDINRMDGIKRNKTWMRLIMRSYARNISSQASQSTIAADMQGEPPSEGTLSDYLDALSRACVTEDLPAWNPRLRSKTAVRTSPTRHFSDPSIACAVLHATPEKLLNDFETFGLLFESMCIRDLRVYADALGGDVFHYRDKTGLESDAVIGLHDGRWALIEVKLGEKQVDIAAAHLKKLADRIDQDHEGRPSFLMVLTATAAAYRRDDGVLVVPLATLAP
>NC_004307.2|WP_007051616.1|1457692_1458457_-|aspartate-kinase
MALIVQKYGGSSVADTESIKRVAKRVVETEKKGNKVAVVVSAMGDTTDDLIDQALSIDSNPPEREMDMLMTAGERISMSLLAMAIHAEGSRAHSFTGQQAGFFTDARYGAAHIKAVRPDRVKNALSLGDIAIVAGFQGINAKGDATTLGRGGSDTSAVALAVALGADICEIYTDVDGIFTADPRIVPSARRIPSIDYESILEMASCGSKVLALRCVEYAQRFNMPLHVRSSFSRRPGTLVVPDGIDPRTLPNLD
>NC_004307.2|WP_007051615.1|1457070_1457637_-|ACT-domain-containing-protein
MTEEEAKSMGDLFPDLGPEAPVISGIAHDRSEALATVRGVPNEPGMAAKVFTELATAGVNVDMIVQAGASVGTADISFTVPESAVKQVQNTLLDKQEVLGYHSFDVDTNVGKVAVVGVGMKTHAGLAAKFFQALSDEGINVLMISTSEIRIAALVPLDQLNDAVKALHTAYGLDADQIEAVVYGGTGR
>NC_004307.2|WP_007051614.1|1455894_1456989_+|aspartate-semialdehyde-dehydrogenase
MSEKLKVGILGATGMVGQRFITLLENHPWFEVVTLAASAHSAGKTYAEAVGDRWKMETPMPEYVKNMVVVDGDDAESVASGVDFMFSAVNMPKDQIRAIEERYAKTETPVVSNNSAHRWTPDVPMVVPEINPEHFEVIEHQRKRLGTTRGFIAVKPNCSIQAYTPALAAWKEFEPREVVVSTYQAISGAGKTFKDWPEMVGNIIPFISGEEAKSEKEPLKVFGHVDAAKGEIVPFDGDLKITSQCIRVPVLNGHTATVFLNFGKKATKEELIDRLVNYTSKASELELPHAPKHFIQYLTEDDRPQVKLDVDYEGGMGVSIGRLREDSIFDWKFVGLAHNTLRGAAGGALECAEMLKALGYITKK
>NC_004307.2|WP_015512506.1|1455106_1455727_-|hypothetical-protein
MSIASVEAQKQLDRIVALGYPDVADISAAAFRSLARPLIGALEHSDLGSNILLVPTRELVSPESLIARTSINRMAGFTTMPPRDIASFLPQDGFMPPEGPFYLVVNPHTGTCYVNREPDVARKLIDSDERLPLTLEEGLAIATQHPEWLLEKNGFNLLGSRSADGRVPSIWMSQNAPRLGAVWPNSRHTWLGNAYCTARRGVSLFK
>NC_004307.2|WP_015713236.1|1453523_1455104_+|metallophosphoesterase-family-protein
MTSLRFREDGSFRVLQMADVQDGPDVLPDTIRLIREAIREADPDLVVFTGDQIRGYDPAYIDTFLRRRGEEPGARVRAVTEIEAKIRGIKRHPVIRKTSDRVADRLTEAGKPVPAALLDPDTVTNAVAAAGADSTDVITTSEVGDSVETSPTPETVSTLVYSTQSGKASPAHETPATLDELMIETREKVRRTFSGFLGPVVEAGVPFAATYGNHDFQCGILADEQDDIYREYPGCLNPDDSLEPGTFALPVESSDGSGRVAMSVMMVNSGDYAGKPEENDAQYPAYVVNPRGLDLADADGYGTPTPKAIEWLGSVQTELGERNGDGKPVPAIAFQHIPPQEFYDCLKEVPAWTPNAVEGARTHAGRCYVLNHEVCRPGSRLGEAIGCADENVGEVDALREAGGYFALFCGHDHKNSFVGHVHDIDLGYAPTCGFECYGPKSRYRGIRLFEFHESNPAGYVTRMLTWGNLVGRYSSNELRVWFEDHCVTGAVSARNELRRPQVFAVVAGAMSLGFIAIIRSLIKAAR
>NC_004307.2|WP_065453223.1|1450918_1452835_-|2-isopropylmalate-synthase
MGQGQSSVFDLAAVAAASNGGNNDPLLPPARFIGDPQKPSRMPYNKYAAYDKQIPFDYPERTWPGKRLQRAPRWCSVDLRDGNQALVNPMDSERKLRFWNLLVSMGFKEIEVGFPSASETDFDFIRMLIERELIPDDVTIVVLTQCREHLIRRTYEALKGAKRAIVHFYNSVSVLQREVVFRKNKEEIKKLATDAAELCKDLENEAKGIDLYYEYSPESFTGTEPEYAVEVCNAVIGVIKPTPEHPMIINLPATVEMTTPNVFADEVEYVSTHLDDRDSVVLSLHPHNDEGMGVAATELAVLAGADRVEGCLLGNGERTGNVDLVTLGLNWLTQGIDPQLDLSNVPEIRKTVEYCNQIKISERHPYAGNFVFTAFSGSHQDAIKKGLEARQVAAERAGADLDSFVWLVPYLPIDPKDIGRTYEAIIRVNSQSGKGGMAYLLKTNHNLDLPKRLQIEFDKIVQNYADTTKKEVKDEDIWRLFKDEYLPVEQSGMTAAGVVVGDTHDASLVPWGRLKLLKVAVSSGEDGSDTVLKARLLDRGVNVGVDAPVEREVSGIGNGPIAAFLNAISNFGVDASIMDYVEHTMSVGTDAMAASYVECQVGEADDAQIVWGVGIDSSITTSALKSIISAINRFQRKR
>NC_004307.2|WP_007051623.1|1465855_1466455_+|TetR/AcrR-family-transcriptional-regulator
MSDTLDEKRPTRGDARRDAIVQAARKVCLEKGFSKITVSDIASEVGMTRSLFYHYFEDKEAVADAVLDNVIDEILTTLKQWNQARETGNVNKALDDIVHVLRSLIADESPFSNRMIQDGNAELYIKFIDRAADRIADYIAQTTVRDFEQMHGLPITNVHETFFTLIVGLISLIRSHPNISDRTIKEVMAQTLHIESYVV
>NC_004307.2|WP_007057587.1|1466652_1467783_-|hypothetical-protein
MSESERNERRRVVAMVGNPTSDKGRGAKVDAQVLGLLEEAGRAHNFDVIDITGTSFDDSLNQARERAHEYDYLVVVGGDGMIALGANAVGCSGKPLGIVATGSGNDFARGLKLPVNRIETAVEGIVGAIVRGSHIDVDMGRVTSLDGGYAVDPSTGEEYEYQESKSAEHPIDRYYAGMLSCGLDASINDRANHSHLPTGTMRYFAAVLVELTHMKRYGYHIKATLADGTTDERDIITPLLTIANSRHIGGGIEVSPYSCFSDGLLDLVWMDHVPNFGECAVAISNAYNGKLLASKVFGWKRIREIEVTRAAEGDEPPVLMADGEYIGHLPFRVVAEDCALRVLVPPAVAAREVDSRQEVLDVIARDGRDPVTGQFA
>NC_004307.2|WP_013410434.1|1467831_1468209_-|flp-pilus-assembly-TadE/G-like-family-protein
MRYEEGSGTMAGAMLVMVVGIALAVAASVGNLMICQNRARSLADLIAFDAAYALWHADIGDPCALAANMAEANGVVLGSCSVRDEDVLVTIKVETMVLVASSVERMARAGPVSCTEGDNYHNNGP
>NC_004307.2|WP_007051626.1|1468258_1468636_-|pilus-assembly-protein
MKTMTCRWRLARLPPDLCTGSATAEFAIVLPSIIAIAGLILAIGRVVIVSMDCQSAAAAAAREFVVTGDESSARSIAADVAGGEPHVSIAHDGQSTSVTVECSVLPGPLDVTPTRVTGNATAISQ
>NC_004307.2|WP_007051627.1|1468641_1468929_-|DUF4244-domain-containing-protein
MNTPIPVIVDGQAGIFAHSKARVATLNAKAKERLCLMDARIRTLMAEPEEGAATAEYAVVLVAATGFAAVLVAILKSDAIKTLLTNIIKQALKVG
>NC_004307.2|WP_007051628.1|1469213_1469816_-|Flp-pilus-assembly-protein-TadC
MSTVWVHAAAGCAAIASWLYKAPSRHDSRLPGEEPAVAHDCGSSWTILILRMLQVSLRQGSSIPRALDMVGKAVGGDCGARMSEVGSSLARGVPWADAWHAAMAVQHEGAPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFMM
>NC_004307.2|WP_164928303.1|1469812_1470469_-|Flp-pilus-assembly-protein-TadB
MMRCAVLVALAVLIWPGNKSGRLYRLAYRGRAVDSAAINEPRYAGSPRVGVAQVITSAIARLRGGGTLVEAFEEQSSRRFATQRITVERLITVFEQRRLPDESPAQVLEAARGVTAAAVLSDELGCQAVPCLEAVLTAYRQMRLMQNLRSQACAVPKATVGLLSALPAVTVALGELLGARPLAFLLGSPRGVVCLVLGGCCYAAGLAWMRALLKGSGL
>NC_004307.2|WP_007051629.1|1470468_1471536_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MAAVITRADEPGAVPRTVFFGLLNDVASDPQVTDLAVTCDGRVWADRGNGMRETVLRVPFRSPQVVREYAVQLCAQLGRRLDDACPIADAASPDGIRVHAVIAPLVPQGAAISIRFPDRTMASLRHLSQLGVFPAAWLPMFVGLVRRHATVLITGGTGVGKTTLLKALLAQCDVNERIVTVEEVRELGELGRGDHVSLVTREANVEGVGAISLTDLVKATLRMRPDRVVLGECRGAEIVDLLRAFNSGHHGGMTTVHADGVNRVPSRLISLGLLAGVSPQALAMLAAGAFDAVVHLERVNGQRRITQIGELRVAHGELAGTPLAVWNGCHPPRYAAEWGHFIERWGIVPGPSGGG
>NC_004307.2|WP_011068523.1|1471542_1472493_-|P-loop-NTPase
MNSNTTHRVARRITSPAVAPPGIPLPTDDAPIPAHRYYTPPPRPLASCERQRSGEAPALALTTDTSFHNIVTMTSGHGGVGLSVMASMLAWTLARREHSCALIDADFVAGCLDLLLGVEREPGLRFSQVDAPLGRIEGDAMNHELMMWEGVRVLPYDPWSARQPDWWEVQAAIRALAETNDVVIVDAGQGGLIETVPDLRSGMQVIAAELSVMGLARAKSHRSRLDSWGCEAPHIVGVEPRGAPRGRGHVGIGEAQDYLTATVLGPVKPSVNLCGDVLEGLGIRSVTKGSRKAVSLLADLVEQAIRPVSGASCKDR
>NC_004307.2|WP_007051631.1|1472715_1473441_-|DedA-family-protein
MGFVNFIIELLKDPRAAIAGWIAMGVAPTLGFIFLIVFIETGVVFFPFLPGDSLLFAAGVFAAPDAATGKAALPLFWLLPVVWCAPIIGDQCNYFIGHFFGRRIIQSGKVKALTPERLAKTEGMIEKWGPLAVFLGRFFPFIRTFMPFISGISGMRWSRFTPFSVLGGLCWSTLFTLLGYFFGNIPAVQDHFELVIVLILLVSLAPTIIGLLKAKFGKKKPAKVTDAQLDVMEDGIKNLDK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_004307_3	3.2\|1463082\|24\|NC_004307\|CRISPRCasFinder	1463082-1463105	24	NZ_CP047177	Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence	98015-98038	3	0.875
NC_004307_3	3.2\|1463082\|24\|NC_004307\|CRISPRCasFinder	1463082-1463105	24	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1789555-1789578	4	0.833

1. spacer 3.2|1463082|24|NC_004307|CRISPRCasFinder matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

ccggcagccggctgcggaaccgat	CRISPR spacer
acggctgcccgctgcggaaccgat	Protospacer
 **** *** **************

2. spacer 3.2|1463082|24|NC_004307|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 4, identity: 0.833

ccggcagccggctgcggaaccgat	CRISPR spacer
gaggcagccggcggcggaaccgac	Protospacer
  ********** **********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1088906 : 1153363

Enterobacteria_phage(30.0%)

tRNA,integrase,transposase

attL 1146593:1146652|attR 1154644:1155983

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007053738.1\|1088906_1089569_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_007053739.1\|1089875_1091240_-	PFL family protein	NA	NA	NA	NA
WP_007053740.1\|1091375_1091648_-	ACT domain-containing protein	NA	NA	NA	NA
WP_007057651.1\|1091730_1092981_-	galactokinase	NA	NA	NA	NA
WP_007055169.1\|1092997_1094248_-	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_023658105.1\|1094240_1095056_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.7e-22	32.1
WP_007053743.1\|1095410_1096562_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_008783167.1\|1096729_1098103_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_007051332.1\|1098294_1100610_-	penicillin-binding protein	NA	NA	NA	NA
WP_007051333.1\|1100713_1101433_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_007051334.1\|1101671_1102757_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_007051335.1\|1102814_1103846_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_007051336.1\|1103910_1106427_-	S9 family peptidase	NA	NA	NA	NA
WP_007051337.1\|1106487_1107819_-	DUF2183 domain-containing protein	NA	NA	NA	NA
WP_007051338.1\|1107885_1108299_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_011068355.1\|1108324_1109617_-	NAD(+) diphosphatase	NA	NA	NA	NA
WP_007051340.1\|1109626_1110484_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_015713346.1\|1110609_1111272_-	NUDIX hydrolase family protein	NA	NA	NA	NA
WP_080558457.1\|1111240_1111426_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011068357.1\|1111439_1111811_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.4e-10	38.6
WP_011068358.1\|1111984_1112968_+	G5 domain-containing protein	D6PSZ3	Lactobacillus_phage	5.3e-20	49.1
WP_011068359.1\|1113313_1114690_-	hypothetical protein	NA	NA	NA	NA
WP_011068360.1\|1114887_1116324_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_011068361.1\|1116543_1116978_+	hypothetical protein	NA	NA	NA	NA
WP_011068362.1\|1117283_1118675_+	hypothetical protein	NA	NA	NA	NA
WP_011068364.1\|1119573_1120893_+	AAA family ATPase	NA	NA	NA	NA
WP_011068365.1\|1120892_1121543_+	RloB domain-containing protein	NA	NA	NA	NA
WP_164928297.1\|1121694_1122570_+	hypothetical protein	NA	NA	NA	NA
WP_164928241.1\|1122890_1123397_-	hypothetical protein	NA	NA	NA	NA
WP_131268308.1\|1123968_1124151_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_164928242.1\|1124466_1124853_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.1e-18	40.4
WP_029679549.1\|1124942_1125704_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.8e-37	38.8
WP_011068368.1\|1130471_1131674_-	hypothetical protein	NA	NA	NA	NA
WP_011068370.1\|1132137_1133043_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-97	59.6
WP_011068371.1\|1133133_1134576_-	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_164928243.1\|1134589_1135612_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.7e-77	48.2
WP_011068373.1\|1135775_1137215_-	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA
WP_011068374.1\|1137336_1139082_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA
WP_164928244.1\|1139108_1139972_-	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.7e-14	25.0
WP_011068376.1\|1139989_1141177_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_011068377.1\|1141194_1142475_-	hypothetical protein	NA	NA	NA	NA
WP_011068378.1\|1142467_1143409_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_011068379.1\|1143424_1144618_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_164928246.1\|1144675_1146208_-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA	NA	NA	NA
1146593:1146652	attL	NA	NA	NA	NA
WP_007053137.1\|1146733_1147936_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007053138.1\|1147932_1148898_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007054866.1\|1148894_1149950_+\|integrase	tyrosine-type recombinase/integrase	A0A0U4IH55	Gordonia_phage	1.0e-05	26.7
WP_007054866.1\|1151345_1152401_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4IH55	Gordonia_phage	1.0e-05	26.7
WP_007053138.1\|1152397_1153363_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1154644:1155983	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_004307

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection