CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_002947	Pseudomonas putida KT2440, complete sequence	2 crisprs	DEDDh,RT,csa3,cas3,DinG,WYL,PD-DExK	0	0	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_002947_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002947_1

1913255-1913375

Orphan

Consensus_repeat	Method
GGGTGAAGTGGCCATGGCCTTTGTGGCCATAACTGAGATCGATGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002947_1

>merge|NC_002947|1|1913255-1913375|CRISPRCasFinder
GGGTGAAGTGGCCATGGCCTTTGTGGCCATAACTGAGATCGATGGGGGCCACGGGTAGCTGCTGAAGAGCCTTGGGGGTGAAGTGGTCATGGCCTTTGTGGCCATAACTGAGATCGATGGG

>NC_002947|1|1|1913255-1913375|CRISPRCasFinder
GGGTGAAGTGGCCATGGCCTTTGTGGCCATAACTGAGATCGATGGG	GGCCACGGGTAGCTGCTGAAGAGCCTTGG
GGGTGAAGTGGTCATGGCCTTTGTGGCCATAACTGAGATCGATGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002947.4\|WP_049587242.1\|1899449_1903475_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239155
NC_002947.4\|WP_010952760.1\|1908539_1909250_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_002947.4\|WP_010952771.1\|1922253_1923243_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_002947.4\|WP_010952769.1\|1920562_1921525_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NC_002947.4\|WP_049587252.1\|1917141_1918224_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_002947.4\|WP_010952766.1\|1915860_1916298_+\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
NC_002947.4\|WP_003252539.1\|1916747_1917116_+\|hypothetical-protein	unknown	unknown	unknown
NC_002947.4\|WP_004577645.1\|1916412_1916751_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_002947.4\|WP_010952756.1\|1903745_1906298_+\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
NC_002947.4\|WP_010952753.1\|1896755_1897073_-\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	unknown	unknown	gnl\|CDD\|171110
NC_002947.4\|WP_010952759.1\|1907762_1908521_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_002947.4\|WP_010952757.1\|1906297_1906660_+\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239605
NC_002947.4\|WP_164721827.1\|1918341_1920423_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NC_002947.4\|WP_003252510.1\|1897290_1898211_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NC_002947.4\|WP_010952770.1\|1921585_1922239_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NC_002947.4\|WP_010952764.1\|1913633_1914566_+\|pca-operon-transcription-factor-PcaQ	unknown	unknown	gnl\|CDD\|274127
NC_002947.4\|WP_010952765.1\|1914819_1915572_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NC_002947.4\|WP_010952761.1\|1909470_1910811_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NC_002947.4\|WP_010952762.1\|1911106_1912036_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_002947.4\|WP_010952758.1\|1906787_1907738_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240633

Protein	Function_ID	Function_description	E-value
NC_002947.4\|WP_049587242.1\|1899449_1903475_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_002947.4\|WP_010952760.1\|1908539_1909250_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	5.33796e-65
NC_002947.4\|WP_010952771.1\|1922253_1923243_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	9.78557e-147
NC_002947.4\|WP_010952769.1\|1920562_1921525_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.07634e-153
NC_002947.4\|WP_049587252.1\|1917141_1918224_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.09607e-70
NC_002947.4\|WP_010952766.1\|1915860_1916298_+\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	7.65621e-13
NC_002947.4\|WP_164721827.1\|1918341_1920423_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NC_002947.4\|WP_004577645.1\|1916412_1916751_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.5425e-09
NC_002947.4\|WP_010952756.1\|1903745_1906298_+\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NC_002947.4\|WP_010952753.1\|1896755_1897073_-\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	gnl\|CDD\|171110	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE.	7.82255e-35
NC_002947.4\|WP_010952759.1\|1907762_1908521_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.0493e-59
NC_002947.4\|WP_010952757.1\|1906297_1906660_+\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239605	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.	1.45099e-49
NC_002947.4\|WP_003252510.1\|1897290_1898211_-\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	3.06772e-162
NC_002947.4\|WP_010952770.1\|1921585_1922239_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.38001e-60
NC_002947.4\|WP_010952764.1\|1913633_1914566_+\|pca-operon-transcription-factor-PcaQ	gnl\|CDD\|274127	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. [Energy metabolism, Other, Regulatory functions, DNA interactions].	1.89644e-121
NC_002947.4\|WP_010952765.1\|1914819_1915572_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	2.7914e-80
NC_002947.4\|WP_010952761.1\|1909470_1910811_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.83802e-111
NC_002947.4\|WP_010952762.1\|1911106_1912036_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.29624e-25
NC_002947.4\|WP_010952758.1\|1906787_1907738_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.88816e-149

>NC_002947.4|WP_010952762.1|1911106_1912036_+|AraC-family-transcriptional-regulator
MPPKREVPTYVMQQRSELMDFYIRDQRGRPAETAPHRHEYFQIQVNLGGDTVQHIGSVQRPFRRNTLAFILPHRVHVIPHPADSDFVVINFSQTFLLPHLACDPMDLEEVSILQAPELSPFRFQEHLDFHLSDPDFAEVRQTLERMRALDANRRFGTREILKGLLLQLIGQVCGLYAEPLRELADSNAAQLSRRAALGRMSDYLRRHIDDPDLNLQKVAAATYLSPTYLTHWLRKEIGKTFSELVLERRMHAARNYLLNGSRPVGEVARLCGFADEAYFSRRFRQIHGLPPGQFRRQQRDPDTPQAAML
>NC_002947.4|WP_010952761.1|1909470_1910811_-|MFS-transporter
MSSTPTPRAASSYTLDAAPAQRLPTRRRWFMLSLLLVATIINYVDRVNISIAAPFMAKDLGLDKVEMGLIFSAFAWTYALALVPAGFIADRFGSRLTYGVSLISWSAVTVAQGLASGFASLFGLRLAVGAMEAPAFPANSRAVTVWFPARERGMASSIYVCGQYLGTALFTGALLWLATTYDWRHVFYSTGLVGILFGVVWLVLYRDPLNCKKVSKEELAYIENGGGLVKSSQERTRFDWRQVAELFRYRQVWAICLGKFASTSALYFFLTWFPTYLIEERQLTLIKVGIFAVMPFIGATVGILLAGIVSDLLIRKGYSLSFARKLPLVVGSMLGMSIVLVNFTDSNVLCIAVLTLAFFAQGIASSSWAAVSEVAPKELIGLTGGITSLAANIGGIVTPIVIGAIVHASGSFAMAFWFIGGVALMGTLSYSLLLGKLYRIELKTAG
>NC_002947.4|WP_010952760.1|1908539_1909250_-|fumarylacetoacetate-hydrolase-family-protein
MTYLFNPPAIVSLPIRGSDARFPVGRVFCLGRNYPWPESYGAAPQEPVFFMKPASNVVEALGELPFPPQTDEFCHEIELVAAIAKGGANIAREHALEHVFGFAAGLDMTRRDHQRKAKAEGLPWEAAKVFEASAPMTAIVPASECDWPLDTSLWLQVNGQERQRAHLSQQTWALAEVISRLSRQLPLRPGDLIMTGSPPGVAPLNPGDTLHAGIDGIGELHLHVGPRPVGHTANAA
>NC_002947.4|WP_010952759.1|1907762_1908521_-|SDR-family-oxidoreductase
MSQNKKVALVTGAGSGIGRAVALALLEDNFSLVLAGRRAEPLQAVVEQALAAGGEALAVPTDVRDEQSVAHLFATIEEVHGRLDVMFNNAGINAPAVPVDELPLENWRNVIATNVDGVFLCARAAFGLMRRQQPQGGRIINNGSISAHTPRPFTAPYTASKHAVLGLTKALALDGRPYHIVCSQVDIGNALTELSERMTRGVRQANGEIAAEPMLDVRHVADAVRYIAALPLDANVLNMTVMASNMPFVGRG
>NC_002947.4|WP_010952758.1|1906787_1907738_-|2-hydroxyacid-dehydrogenase
MKPEVLQLSPILIPQIRERLEQLFTVHRYYEQADKEAYVSQHAGNIRGVITGGHTGISQALMARLPNLEVIAVNGVGTDAVDLAYARDRGIQVTATIGALTEDVADLAIGLLIGLCRGICTGDRFVRAGRWATSTTPLAPLPLARQVSGMRVGIVGMGRVGRAVAQRAAAFGCPIRYTDLQALDVPYGFEADLLQLAKDSDALILAAAADKGEALINRDVLQALGSEGYLINIARGKLVDEPALIAALQAGEIGGAALDVFADEPRAPEALFEREDVVLQPHRASATVQTRTRMGEMVVASLVDVFAGRTPQGLVI
>NC_002947.4|WP_010952757.1|1906297_1906660_+|nitrite-reductase-small-subunit-NirD
MNLANAAVNTQENWQTVCQAQDLVADSGVVVWLDGAQVALFYLPGQAQPLYAVDNRDPRSGANIIGRGLVGSVQGELVVAAPLYKQHFSLLSGECLEDAGQRLRVWPVRLKGEAVELAVA
>NC_002947.4|WP_010952756.1|1903745_1906298_+|nitrite-reductase-large-subunit
MKATASSGQRERLVIVGNGMVGHHCVEQLVSRGALQRFEVRVFGEERQRAYDRVHLSEYFGGSCAETLALCEHDFYEANGVHLHLGEAVLEIDRERREVVTAAGRYGYDQLVLATGSYPFVPPIEGSSGNARLVYRTLDDLDGIRAAAAGARRGVVVGGGLLGLEAANALKSLGLEAHVVEFAPRLMPVQLDGEGGAALKAQIEALGVGVHLSRATQSVSAGETYRYRMNFDGGEHLETDLIVFSAGIRPQDALGRGCGLDIAARGGVVIDNHCRSSDPRIFAIGECASWNGSVFGLVAPGYSMARNLAGLLMGEAAVAFTGADMSTKLKLLGVDVGSIGDAHGATPGARSYRFIDEANSAYRRLVVDASGKHVLGAVLVGDNSYYDTLLQYAQNGIALPADPAALILPQGGGAPALGADALPDSATICSCHNVSKGAVCAAIDSGCSDLAAVKGCTKAATGCGGCAALLKQVFEHELTARGVAVDKSLCEHFAYTRQELYGLVRVEGIRTFSELLERHGKGHLGCDICKPAVGNILASCWNQPIMDPALVPLQDTNDTFMANMQKNGTYSVVPRIPGGEITPDKLIVIGQVAKKYDLYTKITGGQRIDLFGAQLHELPLIWGELIEAGFETGHAYGKSTRTVKSCVGSTWCRYGVQDSVAMALRLEDRYKGLRSPHKLKFAVSGCTRECAEAQSKDIGVIATDKGWNLYVCGNGGMRPRHAELFATDLDDEALVRLIDRVLMFYIRTADKLQRTSVWRENLEGGLDYLKQVIIDDSLGLASELESQMQHVVDQYECEWANALNDPEKLKRFRTFVNDRRADPDVHFVREREQRRPAAPLHLIPTVEEAV
>NC_002947.4|WP_049587242.1|1899449_1903475_+|molybdopterin-dependent-oxidoreductase
MANSEVRSVCPYCGVGCGIVMSVADGKVGKISGDKLHPSNFGRLCTKGLTAHQPLSASGRMADAYLRQQRSQPPVRTSMDQAIAATAERLRGIIDQHGPDAVALYVSGQMSLEAQYLANKLAKGFIRTRHIESNSRLCMASASSGYKLSLGADGPPGSYQDFEHADVFLVIGANMADCHPILFLRLLDRVKAGAKLIVVDPRRSATADKADLFLQVRPGSDMALLNGLLHLLHRNGHTNPDFIARHTEGWDEMPAFLDDYTPERVAAITGLAEADIIKAAEWIGSANNWMSCWTMGLNQSIHGTWHSNAICNLHLATGAICRPGSGPFSLTGQPNAMGGRDMGYMGPGLPGQRSALVEDDRAFVERQWQLPPGSLRSEGGEGTVALFGQMKAGEVKACWVICSNPVASVANRQQVIDGLRKAELVITQDAFLDTETNRYADILLPAALWAEGEGVMINSERNLTLMPRAVEPPGQSLPDWQIIARVACAMGYADAFDYPNAEAVYEEIRRFHNPSTGYDLRGIGYAELRTQPRQWPCAPGSEQHRSPLRYLNDGSSQALLLDARGRRPALAFPTASGKAHFFARPWLPAAEVPDDDYPMVLNTGRVQHQWHTLTKTGKVPALNKLEPGPYLEIHPEDAARLGVAEKDQVAVRSRRGQAVLPARISDRVMPGNCFAPFHWNDLIGEQLAINAATCDAVDPLSLQPAFKHCAVALERVAGERIDALDLNTATVEPVRMPTATLSRLLGLHTLPVPVLAEEERHYLQGFLLGLDQARAEGVPRLPASAPLAASRRLFVDGLLAGLFAQPATAPIAAQAAPWHQVLWASQTGNGEQLAERCAARLRGAGLNVQLSCLEAVSPSQLQGAASVVLIASTFGDGDAPDSGAAFWQALQGEEGAHCAGLPYAVLALGDSSYDQFCGFGRKLDQRLAELGGHRLLARVDCEPDFDEAFAGWLEALLPALGTAAAPSPASEPAPVSAFSKQQPWMATVLENRLLNGPGASKETRQLVFDLGGSGFSYAAGDALGVWPRNCPALVEELLTLMQLDGQAMVELKGHSTMPLAEALRAHLEIAKVTAQQLQAFASNAPDLQRLLQPECKAELQDWLWGRQLVDVLRAFPQQLPLASWLELLKPLQPRLYSISSSPLAHPGQVHLTVSTVRYGERKGVCSSFLADRAQVQKVAIFPQVSKHFRLPEDDSVPVIMVGPGTGIAPFRAFLEEREARGAKGDNWLFFGEQYAATDFYYQEQLQAWQAAGHLRLDTAFSRDQVEKIYVQQRMLEQGALLWQWLEAGAYFYVCGDAQRMARDVDAALRVIVAEHGRMDAAAAAAYVEGLSKARRYRRDVY
>NC_002947.4|WP_003252510.1|1897290_1898211_-|recombination-associated-protein-RdgC
MWFKNLLTYRLTQEVPFEPEALEAALASKPARPCASQELTTYGFVAPFGKGEDAPLVHVSGEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVYKKERDQIKDEIIQAFLPRAFIRRSMIFAAIAPRLGVILVNSASAKRAEDLLSTLREVMGSLPVRPATVKIAPVATMTDWVKSQQAAEGFYVLDECELRDTAEDGGIVRCKRQDLTGEEIQLHLSTGKVVTQLALAWQDKLSFILDDKMVIKRLKFEELLQEQAEQDGGDEAAQQFDASFQLMMMTFAEFLPVLFEALGGEEIPQGV
>NC_002947.4|WP_010952753.1|1896755_1897073_-|quaternary-ammonium-compound-efflux-SMR-transporter-SugE
MSWIILFFAGLFEVGWAVGLKYTDGFTRPLPTVLTVGAMVISLGLLGLAMKELPLGTAYAIWTGVGAVGTVIAGIILFGESMALVRLVSVALIVCGLVGLKVSAS
>NC_002947.4|WP_010952764.1|1913633_1914566_+|pca-operon-transcription-factor-PcaQ
MNLDTRIKYRHLLCFLEIARQGSLARAADILSISQPAISKTLKELEDLLEARLFERSRQGVELTPAGTRFMRYAGPSVQALRDGVSSLRGEARAPSQVRIGVLSTVEGLLMPEVLCRLHQRHEALVISVVTGVSAQLLGQLHLGELELVVGRMTDSPQIQGLSFEHLYSESMSLVVRPGHPLLASTPVERGQVGRYPLVLPPAGTTIRQHADSLFVQCGIQMPAQRLETLSLALSRRYLLGSDGLWVAPRDAVLLDLRRGELVELDLGVREPGGSVGICRNAALPLSLPGQWVGEVLREVAGEYREGRYP
>NC_002947.4|WP_010952765.1|1914819_1915572_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MKQHRLAAAVALVGLVLAGCDQQASSPELKTPAQKASYGIGLNMGKSLAQEGMEDLDSKAVALGIEDAVSKKEQRIKDEELVEAFTALQKRAEERLAKASEEAASAGKKFLEENAKKPGVVTTASGLQYEVVKKADGPQPKPTDVVTVHYEGKLIDGKVFDSSVERGSPIDLPVSGVIPGWVEGLQLMHVGEKYKLFIPAELAYGAQSPSPLIPANSVLVFDLELIAIKDPAQLQGAEPQAEAPEEAPAK
>NC_002947.4|WP_010952766.1|1915860_1916298_+|DUF1232-domain-containing-protein
MSAPWNFARFLPLAERLLSRGRLPALLFAVARKGPRLGQLREDVKLLQSLCLAWWRGEYRAISPKALVTVVAGLLYFVSPIDAIPDWLLGVGFLDDIAVLGWVLKTVADELARFKAWRDSQAPERLRVVERLPATPEALRLERNK
>NC_002947.4|WP_004577645.1|1916412_1916751_+|helix-turn-helix-transcriptional-regulator
MGIQVISRDGQPEYAVVPWEQYQALLSAAGQAPAEAVSSEAQGVAASAPLPAFSEVAQIRQAKGIAPEQLARNVGVSPAYLAMIESGERQPDAAIRRALAWHLGVAGWSEPS
>NC_002947.4|WP_003252539.1|1916747_1917116_+|hypothetical-protein
MSQVRISRQHWDNLLGELDLARRQRHLLTYRALIERLQLPSPAMQTLTAALEYLAVLDARAEQPLRSSLVISQGASRLPRTGFFECVERLGRFTGPVDGMEAASWHASEVVRVFEYSYPETA
>NC_002947.4|WP_049587252.1|1917141_1918224_-|EAL-domain-containing-protein
MTVAEQLSALSAILAQRSIHSLFQPIMCLSEHRVFGHEALSRGPSNSPLHAPLNLFTIARQAGRLTELEAACRESACRRFSEQQLQGKLFLNISPESLLEPHYPSGLTLKLLEQVGLPPSRVVIELTEHTPTDDFQLLSNALHHYRDMGFSIAIDDLGAGYSSLRLWSELRPEYVKIDRHFIDGIHRDPLKREFVGSILQIARASKAQVIAEGIELAEELAVLVEMGVDLVQGYLLGRPQEMGVRDSGLLPALTQVPLAEQPTVHLNATIGQLLELFGRYQHLEALEVVDADGRGCGLIHRDALPVPAYSRVNPLLRGPVPNHQSGVGAGLPANTVAAATENDGWKLASRPCLFAQGHHL
>NC_002947.4|WP_164721827.1|1918341_1920423_-|carboxy-terminal-processing-peptidase
MKHFLPSTALAVMIGLGSLTLGGNAAAANKWDSLQPDRDEIVASLNVVELLKRHHYSKPPLDDARSVIIYDSYIKLLDPARSYFTAADIAEFDKWKTQFDDFLKSGNLDPGFTIYKRYLDRVKQRLDFALAELNKGVDKIDFTTKETLLIDRKDAPWMKNQAELDDLWRKRVKDEVLRQKIAGKEPKQIQETLIKRYKNQLTRLDQTRAEDIFQAYINTFAQSYDPHTNYLSPDNAENFDINMSLSLEGIGAVLQSDNDQVKIVRLVPAGPAAKTKQVAPADKIIGVAQGNKEMVDVVGWRLDEVVKLIRGPKGSVVRLEIIPASNAPSDQTSKIVSITREAVKLEEQAAKKSVLKLKQDGRDYKLGIIEIPAFYLDFKAYRAGDPEYKSTTRDVKKLLTELQKEKVDGVVIDLRNNGGGSLQEATELTSLFIEKGPTVLVRNSDGRVDVLEDENPGAFYKGPLALLVNRLSASASEIFAGAMQDYHRALIIGGQTFGKGTVQTIQPLNHGELKLTLAKFYRVSGQSTQHQGVLPDIDYPSIIDTKEIGESALPEAMPWDTIRPVVKPAADPFRPFLAQLKAQHEARSDKDAEFTYIRDRLALTQKLMNEKTVSLNEQERRARHDSIESKQLALENTRRKAKGEEPLKELKKEDEDALPVEDENTKPEDDAYLAETGRILIDYLSASTKVAKK
>NC_002947.4|WP_010952769.1|1920562_1921525_+|NAD(P)H-quinone-oxidoreductase
MKALQGVDGHVEWVEAERPTCDAGQVRIRVAAAGLNRADLLQMKGLYPPPPGASPYMGLECSGVVEEVGAGAAWRVGDRVCALLASGAMAEEVVVDARHVLPVPEGLGLHEAAALPEVYATAWLNIFQLGAVKAGEKVLVHAGASGVGSAAIQLCKAFGSPVWVSVGSQDRLAYCQALGAAGGVVRNENLDALEGFGPFDVILDPVGASYGELNLKLLARDGRWVIIGLMGGRKFELDLAQVLGKRLEITGSTLRNRDDGFKAELLRELQQQVWPLFAEGRLSPQLVDTYPVEFAQAAYAELETNQVSGKLVMVIDPSLV
>NC_002947.4|WP_010952770.1|1921585_1922239_-|HAD-IB-family-hydrolase
MALAIFDLDETLIHGDCASLWSEQMARLGWVDGKDFLRRDHELMEAYGRGHLQMEDYMAFSLEPIAGRTLEEVEHLVAPWVEEVIEPIIYGDACRCIAEHRKRGDRILIISASGTHLVGPIAARLGVDEYLAIELEAVNGVYTGKTHGVLTYREGKITRLLEWLDQEQENLEGASFYSDSRNDLPLLLRVDHPHVVNPDAVLREHAEINGWPTLSWS
>NC_002947.4|WP_010952771.1|1922253_1923243_-|ABC-transporter-ATP-binding-protein
MSFVSVQKLQKSYAGSPVFERIDCHIERGEFVTLLGPSGCGKSTLLRCIAGLTSVDSGQILLDGHDIVPLSPQKRGIGMVFQSYALFPNMTVEQNVAFGLRMQKVKADESQLRVREVLELVELGKFAGRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKHLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDLFAAGFIGNYNLLDADSASRLLQRPVASRLAIRPESITLGEHGELDAEVRSHSLLGNVIRYRVRVREVELVVDVLNRSPADLHADGKRVSVSIDPTALREVA

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Crispr_ID: NC_002947_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002947_2

2939399-2939472

Orphan

Consensus_repeat	Method
TGTAGGAACGGGTTCACCCGCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002947_2

>merge|NC_002947|2|2939399-2939472|CRISPRCasFinder
TGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAA

>NC_002947|2|2|2939399-2939472|CRISPRCasFinder
TGTAGGAACGGGTTCACCCGCGAA	AGGATCAACACAGGCCTCGAAAGCTT
TGTAGGAGCGGGTTCACCCGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_002947.4\|WP_010953503.1\|2945766_2947521_-\|phosphoethanolamine-transferase-CptA	unknown	unknown	gnl\|CDD\|333729
NC_002947.4\|WP_010953490.1\|2922480_2925252_-\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|341253
NC_002947.4\|WP_010953499.1\|2940768_2941680_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176104
NC_002947.4\|WP_010953494.1\|2934283_2935210_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NC_002947.4\|WP_010953495.1\|2935966_2937643_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_002947.4\|WP_010953500.1\|2941725_2942199_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NC_002947.4\|WP_010953489.1\|2921968_2922454_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NC_002947.4\|WP_049588147.1\|2942349_2942946_+\|paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|377345
NC_002947.4\|WP_010953496.1\|2937725_2939054_-\|IS110-like-element-ISPpu9-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_002947.4\|WP_010953502.1\|2945223_2945754_+\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|377153
NC_002947.4\|WP_003250815.1\|2940104_2940491_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NC_002947.4\|WP_049587178.1\|2926700_2929205_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NC_002947.4\|WP_003250810.1\|2935285_2935705_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319916
NC_002947.4\|WP_010953491.1\|2925816_2926515_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NC_002947.4\|WP_003250813.1\|2939493_2940063_-\|hypothetical-protein	unknown	unknown	unknown
NC_002947.4\|WP_049587180.1\|2929211_2934011_-\|leucine-rich-repeat-containing-protein	unknown	unknown	gnl\|CDD\|339245
NC_002947.4\|WP_010953501.1\|2943571_2945212_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|225553
NC_002947.4\|WP_004575417.1\|2947732_2947888_+\|DUF2986-domain-containing-protein	unknown	unknown	gnl\|CDD\|314517
NC_002947.4\|WP_020190923.1\|2942942_2943572_+\|paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|225542
NC_002947.4\|WP_049587176.1\|2910980_2921807_+\|heme-peroxidase	unknown	unknown	gnl\|CDD\|188653

Protein	Function_ID	Function_description	E-value
NC_002947.4\|WP_010953503.1\|2945766_2947521_-\|phosphoethanolamine-transferase-CptA	gnl\|CDD\|333729	NF012179, CptA, phosphoethanolamine transferase CptA.	0
NC_002947.4\|WP_010953490.1\|2922480_2925252_-\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	1.22729e-141
NC_002947.4\|WP_010953499.1\|2940768_2941680_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176104	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of N2 fixing bacteria, and synthesis of virulence factors, to a name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.63638e-91
NC_002947.4\|WP_010953494.1\|2934283_2935210_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	7.93723e-21
NC_002947.4\|WP_010953495.1\|2935966_2937643_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.14897e-122
NC_002947.4\|WP_010953500.1\|2941725_2942199_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.00225504
NC_002947.4\|WP_010953489.1\|2921968_2922454_+\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	2.62304e-18
NC_002947.4\|WP_010953496.1\|2937725_2939054_-\|IS110-like-element-ISPpu9-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	6.80833e-21
NC_002947.4\|WP_010953502.1\|2945223_2945754_+\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|377153	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component. ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.	2.1086e-19
NC_002947.4\|WP_003250815.1\|2940104_2940491_-\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	5.35057e-55
NC_002947.4\|WP_049587178.1\|2926700_2929205_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.73273e-20
NC_002947.4\|WP_003250810.1\|2935285_2935705_+\|VOC-family-protein	gnl\|CDD\|319916	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins. Uncharacterized subfamily of VOC family contains human glyoxalase domain-containing protein 5 and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.14035e-49
NC_002947.4\|WP_010953491.1\|2925816_2926515_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.80349e-75
NC_002947.4\|WP_049588147.1\|2942349_2942946_+\|paraquat-inducible-protein-A	gnl\|CDD\|377345	pfam04403, PqiA, Paraquat-inducible protein A. Paraquat is a superoxide radical-generating agent. The promoter for the pqiA gene is also inducible by other known superoxide generators. This is predicted to be a family of integral membrane proteins, possibly located in the inner membrane. This family is related to NADH dehydrogenase subunit 2 (pfam00361).	1.14377e-37
NC_002947.4\|WP_049587180.1\|2929211_2934011_-\|leucine-rich-repeat-containing-protein	gnl\|CDD\|339245	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting. This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus of the family-members there is a series of LRR repeats, and the NEL domain interacts with the most N-terminal repeat. The key residue for the ligation step is the cysteine, eg found at position 386 in UniProtKB:E7K2H2. The LRR section sequesters this active site until invasion has occurred.	4.36979e-55
NC_002947.4\|WP_010953501.1\|2943571_2945212_+\|MCE-family-protein	gnl\|CDD\|225553	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].	2.68014e-146
NC_002947.4\|WP_004575417.1\|2947732_2947888_+\|DUF2986-domain-containing-protein	gnl\|CDD\|314517	pfam11661, DUF2986, Protein of unknown function (DUF2986). This family of proteins has no known function.	0.0005996
NC_002947.4\|WP_020190923.1\|2942942_2943572_+\|paraquat-inducible-protein-A	gnl\|CDD\|225542	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown].	4.20198e-61
NC_002947.4\|WP_049587176.1\|2910980_2921807_+\|heme-peroxidase	gnl\|CDD\|188653	cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial family of heme peroxidases. Animal heme peroxidases are diverse family of enzymes which are not restricted to metazoans; members are also found in fungi, and plants, and in bacteria - like this family of uncharacterized proteins.	0

>NC_002947.4|WP_010953496.1|2937725_2939054_-|IS110-like-element-ISPpu9-family-transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLLKMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITGRKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQTLNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDRRIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAALEQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGVDTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVNRAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYNLLTKKQAYVEQGLEEFEARSQDRQVRALLRKARKLGYQLVAA
>NC_002947.4|WP_010953495.1|2935966_2937643_+|MFS-transporter
MAVLDSTSTGSAPQRGITKEERKVIFASSLGTVFEWYDFYLYGSLAAIIARHFFAGVNETTSFIFALLAFAAGFAVRPFGAIVFGRLGDMIGRKYTFLITIVIMGLSTAVVGLLPGYATIGVAAPIILITLRLLQGLALGGEYGGAATYVAEHAPKGRRGFFTAWIQTTATLGLFLSLLVIMACRTAMGTEAFEAWGWRIPFLLSILLLAISVYIRLQLNESPVFMKMKAEGKASKAPLTESFARWDNLKVVIMSLLGGTAGQAVVWYTGQFYALFFLLQTLKIEAQTANLLIAGSLLIGTPFFIFFGSLSDRIGRKKIIMAGCIIAALTYFPIFKALTEYGNPDVFVAQEQNPVVVVADPGQCAFQFDPVGKAKFTSSCDIAKSLLAKRAIPYTNEAAEPGSVAQIRIGERVLPSFDGSSLAAADFKVQSEAFTATLSGALKEAGYPEKADQAKIHYPMVLLLLTILVIYVTMVYGPIAAWLVELFPARIRYTSMSLPYHIGNGWFGGFLPTVAFAMVAATGDIYYGLWYPIVIAVMTAVLGIFFLPETKDRDITHT
>NC_002947.4|WP_003250810.1|2935285_2935705_+|VOC-family-protein
MRPFTIKHIDHLVLRVSDLPRSVAFYTELLGCTVSRVREDLGMVHLATGTAMIDLVTLDGPLGQPGGAAPGVEGRNLHHFCLRIEPFDEAALTAYLEAAGVKVEPAEKRYGAEGEGLSLYCYDPDGNQVELKGPVVPGG
>NC_002947.4|WP_010953494.1|2934283_2935210_+|alpha/beta-fold-hydrolase
MRSLCSPKDHLLDLDGVEIAVRTWGAEDGIPILALHGWLDNAASFERLAPMLDGCFVVAPDLIGHGRSGHRRHDSGYYLWEHAEDMLAVTDSLGLAQFHVLAHGMGTGIASLLAAMTSGIASMTFLDGMGAPFTVAEDDRVQHLARAYRLKRMVQRSQLPGFAEPDVGRFDDLDNALAQRRERLDTELSEGAARLLALRDLLQLDDGYCWRHDPRLVLPEPMPLTEREACDLLSQIRCPLYLLFGRQGAFTGEAFTRRQAALPSQAKVSWHPGGHHFHLDAPDRALVDQLLRILTRHEGGVLQRLVNE
>NC_002947.4|WP_049587180.1|2929211_2934011_-|leucine-rich-repeat-containing-protein
MVQSLYKEYLDEDGSPYAWYATADEPTREQLHNALQTRNKRLAQVKQALGEFKDIIAFCGPLLTERLKLNVPVDRAQYVFQPFESEANIWVGVPDVETPLVPDVEADVLATRPVGQPQTRSLLEAALHNFEGLDEVGPYSRLTNAAGSDTPLAGLTMADFVRHCRALDLGKRYQDHLLATHEGANRAEIQRLSIAANREALRVQALIARLKGLLSKAGLDALAQLCDGSPHPTYDNEALHCWNFNLFDVPVHEVLFIGPDNPYRTNPCIVYVPGDSEHPVREFASRQEAGKHLRSRLLQSEFRRALVHFAYKDRQKELAVKLEIALFEEDEAGIRKPRIMPVIPFTLSPIRTDPWTNLYNAHLARMKADAKTIAVPTAEVDANARNERLKYWFDLGMNVLNVAAFFVPGLNTVMLGVFAYDLMSSVFTGFEAWEEGDTRQALAQLESLAINAGVIAGFAVGTRIVQASGFVDALKSVWHEDKEVLWHPDMKPYASTAAIPEGAQPDLLGHVHVDGKTYLKLDGTLYEVFQGADQQWRVRHPDDAQAYAPRLLHHGNARWQLAHEQPLEWEREQLARRLGSHSAGLDDSELDHAMRTTGTDPDVLRRAQAAGLPPPALLIDTLQRLQLDNQTQQIINCVRHGLPLAAYKNFALPELLRLPGWPEGNVLKVYQGPEPWGESVRYGPPHTLGQTEIEITRTDLDNGQLSQTVLDQMDEEAIEQLLGDTPTEHRASALNNKLAQHLEQHREALFESLQQRRRPTHPPTAQTLARQFPGLPDSALEELLANISNAERERLTNGRVPLRIAEEARLLQARARLDRALLGLFRPSLANDDSLRIKQALQAAHPQAEPARLLQLALGDRQHCASLLGQQPINPRFRSPLRLANGRLGYPLSGRGLQGRALPAARRLRALYPELSSEQITGLQAELARGGDLGSAINQLEVEQRTLNRDLNRWVSTARTLEERFDRQQCTERLMSASRREGGAQAETLVLDRMQLEALPAFTARMPHIRNLRLEGLQMRRLEGSFLTNFPNLETLEIVGNPDIDAETLFEALRSAPRLRELGLTDNGLTTLSPTAQQAIGAMPGLRLLWLSRNRLQLDTTSLGFLTRLPLDALGLAHNQITLDESLAAQFQDMIHPVLLHLSGNPLQLAPDLRFMARLVHLELERCELQQWPDSLTVLMSQPQYQLRYLNLSSNRIRTLPDLPGVLRTPFARDVAAHLPERRWLFNYNTLEAQTRARLGSSGVNVFEHAEDVPLWQGVFRGEASNAEEQLWSDLFDQGENAALLGVLERLAQSAEAQRDGEALRTRVWKLLDDAAHDTVLRERLATVAGDFPPTCGDAGADAFSALEIEVLAHEAAAVAGSRPADLLSLYGKLYRRSQVNQLADRISWRRSLRKQALLDGAFDENLPPYDELDDPSAFPDSELQTGLVDDVEVRLALRQSLASALDYPEPSRGMLYRNTARINDTIIEMVKAAVLSLDRDAIAREQWLTQQPGWVEYLKREHAAQFSLITDFWRPGLDYLYYCLDETAEPVTSLDSSVRRALARVMPESPVDADGRLRRVVLNEQQYRQGVDALTAEQQQVETGLLISLTRQTQTIGR
>NC_002947.4|WP_049587178.1|2926700_2929205_+|UvrD-helicase-domain-containing-protein
MPAVLIFNGVTVAHEQPLAPADLTPPAQLPWFRRLAARLLGRGLTRLQAQHRDSWFLGHATGQRTGHADGVREGFERGRVEGFEAGRQVLVIRDTRPDSAAVPGQDDNLFDDWRLPLTAELKKRFKADVAQRLPAEAQPSAAQWKLIFSDTPSTCVVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQPVQARELVRTFHSRILPLVRSLPGFGQVRAFETLGHEMPAGREAEADSNPFDLRLNDAQRQQLNQCYSSLLGESPRFAELVGQLRSEALQLKPLDPNNPDVQKRAQVTQLAAQRDEELCDVIEDLWFAAGVWPIKGIEPCRETVDIRGSRFHVHGRLEGQGPLVVLGFDPAQSAQYQRPGAKLTVRAEWAVKRTLLQAFCDRPLIWLDNYAMARRLAASLAGDAVAGPGFEYKVKGELAPAPLLDAFVSAANFIENLGLEVNNAVAAMSFPSGDSDALFFEALALYWKALEAHLLDQSPPVMSYNRMFALFGENNPENLHLLPDPLLRPLAHLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSSPKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPAAELPGSPVKVFDRDEAALGETLVEHYQRGETVMMLYRKGSDRALMNEHLQSVLHAEAALPAEQRRLRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEEVQRLAYVAVTRAVQHCYWHVEAANGDAAAAPRASSHVDGKQAFFEDLRGQ
>NC_002947.4|WP_010953491.1|2925816_2926515_-|pirin-family-protein
MLQLRPFESLGHANHGWLDAHHHFSFAEYYDPARMHWGNLRVWNDDLIAAGSGFPPHPHRDMEIITYVREGAISHQDSLGNKGRTEAGDVQVMSAGTGIVHSEYNLEDIDTRIFQIWIVPERTGEAPQWGSRPFPKGERGEGFVTLASGRAGDEDSLQIRTDARLVAATLRAGETAEYRFDAERRGYLVPAKGLVEINGLRAKARDGVAIEQEAVLRVTAIEDSEIVLVDVA
>NC_002947.4|WP_010953490.1|2922480_2925252_-|amino-acid-adenylation-domain-containing-protein
MPDLRPNPTLCLEYRAEQPIHHAFIQQASRCPAAIAIIGQHATCSYSQLEQISAGIAAFLVKNAASGTDRVVIVSRRSAALVYAMLGCLRAGLAFTVADAAYPAARIEQIVNTLKPAVILRCAEASVDVGQPMVVTVPEALAEALQAFPRQPVALPAVSPEQPAYITFTSGSTGEPKGIVTHHAPLVHFIDWHVRQHGFTQADTFSLLSGLGHDPVYRDVFTPLSLGATIACPAQSTLTEPSRLASWLHQHGVSVIHLTPPLGKLIETGAHLNGQILDHLRYLFWGGDALSPTQYQQVRAIAPNAVNVNFYGTTETPQAMAFHTLDPEMDNARVPLGKGIADAQLLVINPANQLVSEGETGEILIRSPYLSRGYWDDPGLTEAKFIANPFTADTADRCYRTGDLGTYLADGSARFLGRADSQVKIRGHRIELAEIENAICRHPHIGQCVVLTNHEGASTRLVAYCVAQQAIRADELRQALSGQLPDYMVPALFVFLDALPLTPNAKVDKRALPAAFDDSINPPLSPLAEKLSTAWARILQVPRLDARLSFVELGGDSLSFVQASRVLEALIGHLPERWETLPVCQLAELSAPPKGAWRVMEMPVFIRMLAIILIVVGHLGDFDHWPILGETSVLFLVSGIALARFQLKAIEARGDARTLLRPLTAIVVPTLLYSALIQLVFARLHWQSLLLVSNWFPASEVSLFNYWYIEVLVQMIVIIGLVLSIRRVRQVLIADPFRWLIIAACALVALDVLLNQFVFDASALLNRVPQHFLAVMVLGMAVHHADTISRKWVASAVAVLVVGELDLMALAGVGWQAFTHYVDIALPAMLALVWFRSVPVPALVARAGAVIASSTLYIYLTHFQFESVAEHVFRHPLFEIALALAGGVLVSYCWNTLLRLLFTRRRKQHQARGADPAERATSA
>NC_002947.4|WP_010953489.1|2921968_2922454_+|cysteine-hydrolase
MRQVLLIVDVQSTFSPPEWLVDGLRRLSANIPTIASVELHDEQVTPFERQLGWHPAAEDESLVEADQVFVKHGYGQSAEAIEYIRQLGVERVLVCGLQTETCVLAAGFALFDAGLMPTLVTDMTIGSSLDRSGKLGTDLWKHHFRQVTTSAQVLAELAGRE
>NC_002947.4|WP_049587176.1|2910980_2921807_+|heme-peroxidase
MANFSKSDLEFILKQIFIAEAHADGASLIDLLPNSQVPFGLRTVDGSYNNLVTGQSEFGAADNSFLRLLEASYRANYVGTGNVVDSQPRTISNLIVDQTANNPAAVEANGGAAPVMSPGIDGVFGTADDKPVFFIPNVSPDAGLTAGFNAWMTFFGQFFDHGLDLVSKSSTDIVFIPLRPDDPLFVAGSPTNFMVLSRAVRTAGADGVVGTADDSQPNTTSPFVDQSQTYSSHPSHQVFLREYTVNAAGDPVATGRLITNRDLGADGKFGTADDGNGESGGMATWAVVKAQARDLLGINLTDADVHSVPLLATDAYGNFLRGPNGMPQVVMRVNNGADGIAGTADDVTQLVEGDRNAPISLANAVSTGHGFLDDIAHNAAPVVVGGALQADADTLVGNAQPVGQGGNNLTYDNELLDAHYIAGDGRVNENIGLTAVHHVFHSEHNRLVQQTKDTLLAAGDLAFLNEWLIDDVTAIPTTPADIAALVWDGERLFQAAKFGTEMQYQHLVFEEFARTIQPQIDEFLAPNGYDTSINPAILAEFAHVVYRFGHSMLTETVDRYDPAFNPVSADPANPDQQLGLIAAFLNPLAFAGSGATADEAAGAIIRGVTRQVGNEIDEFVTEALRNNLLGLPLDLPALNIARGRDTGIPSLNEARREFYAATGDSQLKPYMSWVDFADHLKHPASLINFIAAYGTHSSITGATTEAAKRAAAVALVLGGDGAPLDRLDFLNGTGAYANVTLAGADGIAGTADDIAGVTVTGVDAIDFWVGGLAEKKMPFGGMLGSSFNFVFETQLEALQNGDRFYYLSRTAGMNFGTELENNSFAKLIMANSDVTHLSNTVFLTPTFTLEVNQANQFTGLGADGKADPTGGIEINGVEIVPLVIRDNPDTVGPDSNFLHYTGEDHVVLGGTAGNDIIISSEGDDTLYGDAGDDLLEGGAGNDAVLGGAGDDIITDSFGDNRLEGNAGNDVIVAGSMGVAGNLILGGDGQDFIITTEDISTTFGGLGDDFILGAKTNLPPTGNEGDDWIEKGTQDGAPGDNFAPLLGDEVIGNDIFVGGGGFDEMIGEGGDDIFVGSDAQDKMDGMSGFDWVTNKNDRVGVTVDLSLAALAQPHGNAPNQNAGVFNPVGASPASILDRFAEVEGVSGSAYADVLKGDDVDAVTILNHGGATGSALTNVALIRGLQQFLADAGLPTTGFATGNIMLGGNGSDLIEGRGGDDLVDGDKWLNVRIAVYAPGDVNHTGPEIASFDSMADMIPFMLDRTYNPGQLKAVREILPGTSTGGAAFDTAVFSGLQSEYVVTQNTKGTADVADDVWTVTDTVAGRDGVDTLLHIERLQFADSQRVLVEGVNAQPTGSPTLLDGNGGEITVGDMLTVSVAAVRDADNISAGNPAGSLADRSVSYYWQFEADPGSGVFQDIILLPAGDLAFQSADGTSFKVSPDLAGLSLRVKAIYQDAHGTTEVLYSQPTTVVQPGAPVVPTVATPVVDASDGGAGLHMVRSDLNFILAQIKIAEADAAGQDILSLIPNVRAAMGLRAVDGSNNNLMNLNGNNNTQYGAADNVFPRVTDPVFNPAEGAPAGFFGPGSPAIPGSSYQQTSGPVFDSQPRTISNLIVDQTSNNPAAYATAYDPGADGVLNFGAAGNDDVLKDGVRIVASPGMDGQFGTTDDHDVYLFENTAADAGLSAPFNAWMTFFGQFFDHGLDLVTKGGSGTIYIPLQPDDPLYVEGGFTNFMVVTRATNLPGPDGILGNADDIREHTNTTTPFVDQNQTYSSHPSHQVFLRAYVMTDDGPVATGRLITNRDLGADGRFGTADDTEIGGMATWKVVKAQARDLLGINLTDADVDNVPLLATDAYGNFIKGPNGYPMVVMKGLDGIAGTADDQEVEGNPLAPLDLTNAVRTGHQFLADIAHNAVPVFSGGVLAPDADNVAGNAVPVNPQTGANLAYDNELLDAHYIAGDGRVNENIGLTAVHAIFHSEHNRLVAQTMDTVLDSGDLAFLNEWLLNPVSALPVTPAEIGALVWNGERLFQAAKFGTEMQYQHLVFEEFARTVQPRVDLFFAPTQVYDVDLDASIVAEFAHTVYRFGHSMLTETVDRFDIDFNVIQDPASANPDQQLGLIAAFLNPLAYAASGVTPEDATSAIVRGVTRQAGNEIDEFVTEALRNNLLGLPLDLPAINIARGRDVGIPSLNAVRREIYGQTGDTQLKPYTSWVDLVQHLKHPESLINFIAAYGTHSTITNATTLLEKRAAAMALVFGGDGAPADRMDFLNSSGAWANVTLPGKDGVLGTADDLKAVTVTGVDAIDLWIGGLAEAKAPFGGMLGSTFNFVFENQMEKLQDGDRFYYLERTAGLSMNAELESNSFAKLIMANSSATHLPGLVFSDPGFYLELDQTKQYNEGLGSADPLGENGEQVVFRDSPLTAGPDTHYIRYAGAEHIVLGGTNGDDILVSSEGDDTVWGDAGNDRIEGGDGNDQLRGGAGDDIISDMGGDDNIQGGDGNDVLHGGNGVNLIIGGFGNDFIVTGEDASEAIGGQGNDFILGSKANEQDMGNEGDDWIEKGTSDGAPGDNFDPLGNDPIIGNDVFVGGNENDKFNGEGGDDIMVGSLGFGDRYIGGSGYDWSTFKDLAQGVSIDMSDRFFDVPPVPGSGASTLVRFDIMEGLSGSAHGDFLRGDSEDATSLPTAGATGSVLTNISLIDGLAGLLAAGATFYDGGNIILGGSGSDLLEGRGGDDILDGDKWLNVRISVRANPDGTGPEIASFNSMEPMVPFMLNGTYNPGQLVIVREILSGTDHYDTAVYSGVSTDYSVVVDGNSVTVTDLVAGRDGVDHLTGIERLQFSDSSQASGVGTAVNAGPTGHLAILDATTGLRDDTPVSGQLLRVSNLAVHDADNVSATNATGAVNGPVAYYWQVEALPGSGVYEDITVVAAGEATRATGTTYRVTDDVAGLNIRVRAVYQDAKGTLEIVDSSPNSAPSAGPTVTGLLVQNQTLTANPATIVDADGLSNPQFSFQWQSNRGVGWVNIAGAISSTFVLTQAQVGQNMRVMVSYVDDFGVQESVASDILDPVANVNDAPTGALLISDTTPDQGQTLTALTGAIADIDGLGAFSFQWQQGTGGTFADIAGATAATFTPGFAQGNQQLRVIVRYTDGFGTLESLTSAATAAVTVPPGVVLVGTNAANTLTGTTGNDVISGLGGNDTLNGLGGSDQLFGGIGNDILNGGDDPDFLNGEDGNDTLNGGLGADAMNGGAGNDTFLVDNAGDTVTEALNGGTDQVQTSLASYTLGANVENLTYTGSSAFTGTGNALANTLTGGAGNDLLNGGAGADRLVGGVGNDTYVVDDAGDVVVEATGAGTDLVRTTLASHTMAANVENLAYTGVGNFTGTGNGLANIIDGGAGNDTLSGDGGNDVLNGNAGNDTLNGDAGNDQLFGGLGDDQLRGGGGDDSLDAGGGNDTLLGEAGNDNLNGGAGDDSLDGGNGNDTLQGGDGNDTLFGDVGTDTLIGGAGNDFLNGAAGNDTVVGGAGNDTMIATDGNDVFQFAAGFGNDLIINFDAIAAGGQDRLDITALNITAATFGASVTIADVGADTLVSIGAADSIRLVGVADATTVTAADFILAG
>NC_002947.4|WP_003250813.1|2939493_2940063_-|hypothetical-protein
MRHEFSEVLNDLVDYFLLGDIQLLERFKQDHQLPDDLAGAFTHGDSGDQAVREGIVLPLAGVDNLPYRILFTLDNHTPALREAGSRLKHRRNGYVLRVEHGALMLYTWRILQHFTPKTLGDLMARYQVPGRPIIELDNGWYDVEVLAGALVRDGLYEPAFEFVLKKRWSRGEATAVDTGYAFGLRGYFD
>NC_002947.4|WP_003250815.1|2940104_2940491_-|VOC-family-protein
MKIVVTSILVDDQAKALAFYHYVLGFEPRHDIPMGRHRWLTLTSPNDPNGVELLLEPDAHPAAKVYKAALKQDGIPATSFGVRDIQAEYTRLCAAGVQFIRPPTPMGPVTVAVFDDTCGNLIQIAQKH
>NC_002947.4|WP_010953499.1|2940768_2941680_+|LysR-family-transcriptional-regulator
MAAYTLRQLKYFVTTVEAGSVAEASRQLYIAQPSISTAIKSLEESFGVQLFIRHHAQGVSLTPSGKRFYAKTKSLLQMAHEFEQNALADNDTVAGQIDIGCFETVAPLYLPRLIAGFRQRYPGVDIRLRDGEQQDLIQGLTAGTFDLAFLYDHDLDGTIEAEPLMPPQKPYVLLPENHRFASQAQVSLRDLCPEPMILLDVAPSRTYFVSLFNEMGLAPNIVFSSPSIEMVRGMVGQGFGFSLLVTRPHSEYTYDGQRLAMLDIAEPVALSGLAAAWLKRVQLTKPAQLFVEFCREELAKFLK
>NC_002947.4|WP_010953500.1|2941725_2942199_-|hypothetical-protein
MRTFTWSYLLMLLCAASAAQAQSVVPLKGQSSQQMQLDINDCNTVATNAANGTATSSDPHVGGRVRGAAAGAAAGAVGAQVRGNQHDELYDRVGDDAKQQYRQNRAGEVAAAGAAVGGMRQRQDRRQDRRDQDEAKTQAHASAYSGCLQGRGYQVNP
>NC_002947.4|WP_049588147.1|2942349_2942946_+|paraquat-inducible-protein-A
MSQTQDLIICEYCDTVYHRAPLLKHQRALCPRCGGVLYRHRSLTIEQRLALSVTGGVLLVFANYYPVMTIGMQGLTHSATLWDAVQILSHGSITFIALVMALSIIFAPLLQIALLCWVLGFALAGQRAPGFALCMRGLESLRPWSMLEVCLLGAMVAVIKLAGLLDVIPGIGLLALAALSMLIIHIAGKDIRDLWEQV
>NC_002947.4|WP_020190923.1|2942942_2943572_+|paraquat-inducible-protein-A
MTAPVKAHDLGLCLCHGCGQACDTRSGAHTCNRCGAVIHRRKANAISRGWAFLLAALVFYIPANLLPVMHTEMLGSGTESTIGGGVLEFWEAGAWDIALIIFIASVGVPAIKFFSLGLLLFTAQRGSSWACRQRSQLYRFVELIGYWSMLDVMVVALVAALVQLRGLGTIEPRVGILFFGMVVVLTMFSAMSFDPRLIWDSHANEGRPH
>NC_002947.4|WP_010953501.1|2943571_2945212_+|MCE-family-protein
MGQQTDKREGPGQVEVRTRRWSVSLVWIVPILAILIGASLVVRNWMQQGPVITISFHSGEGLVAHKTQVKYRSVVIGEVTTVDLADDKKSVVAKVQLSNDARSFATRGARFWVVRPRIGVGGVSGVDTLLSGSFIGADSGESKVPEKSFVGLELPPPITYDEKGKRFVLVASDLGSLDIGSSIYYRKIPVGEVVSFALQDDGKGVEIGVFVQAPYDTFVTADTRFWNASGIDMQIGANGLKVDTESLSSILVGGLAFGSPDFAAQAEPAADQARFQLFADRDMALSPPHGQAQYLQLRFDQAMRGLSVGAPVEFKGVEFGRVTSIQLDYDATRQSFPVVVDAVIYPQRLGPVHRKMLAVFKHTEGDMQGARKLIGTFVEHGLRAQARSGNLITGQMFISLDFYPDAPKVAFDMAADPIMIPTLPGSLEQLQEQLQRVMERIAKLPLESIAGNLDGSLRELRASLRQFNGQTLPEVKVALDEVHKTLRTANSAISEDSPQRERMGETLDELERMSRSLRDLADYLGRHPESLIRGRPKAAGSADLEP
>NC_002947.4|WP_010953502.1|2945223_2945754_+|membrane-integrity-associated-transporter-subunit-PqiC
MQRLRNACVASLLVWLGGCSSTPNNYHTLVPSDPVRDSGQRIQVVRVAVPPQVDRPQLVVRQGQSGLAILETEWWGANLVDEFRSALQDLLGGPAGGGKASLRVDVQRFDTVPGRYASLEAVWRLKQQGQVELTCRTSVQTAADNSITSLVNAHQANLRKLAEAVRGSARQGSCPA
>NC_002947.4|WP_010953503.1|2945766_2947521_-|phosphoethanolamine-transferase-CptA
MSHTTSPAAHKRVDWAGLGWLLLFFWYFSGVTQALLLFSGTTGFAGFRDALFLSSLWLAPVLLLPRFTRATAAIIGLVLWAASLVGLSYFGIYRQEFSQSVIFVMFESNTAEAGEYFSQYFSVGLGLALVLYTLVAVLLWRRVRPVSLPLRSRLPVVVLLLVANLVVPFYKQMVTQERNFADALEKVQQRMEPAVPWQLLVGYQQYRQQLDNMQKLLAQNAALPPLQNLRDSSGTAPRTLVLVLGESTTREHMHLYGYDRDTTPNLDALAASDKSLTVFRDVVSPRPYTIEVMQQILTFGDEQNPDRFLSDPSLINLLKQAGYKTFWITNQQTLTKRNTMLTTFSQQTDAPVYLNNQRNQNARQYDDVVLAPFEKALQDPAPNKFIIVHLLGTHMDYRYRYPDDYAHFNDKQGVPAKLTADQVETYNFYDNAVRYNDYVVSSLIKRYAAGKPNGFLMYLSDHGEDVYSSGDHDRLGRNEGAPTRPMYTIPFLLWTSPSWQAEHPRDLQAMANRPYSSSHLIHTLSDLAGLSYDRYEPAKSLVSPQFVVAPRWIGDPYRKNGLREFDHLPLDKADGVQETASTRQ
>NC_002947.4|WP_004575417.1|2947732_2947888_+|DUF2986-domain-containing-protein
MNRRKKIKQLLQAHAKKASAKLAPRKPKYICKADRLKMEAEAAGESSQLAD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

353150 : 401473

uncultured_Caudovirales_phage(33.33%)

transposase,holin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010951660.1\|353150_354329_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-25	36.7
WP_172830946.1\|354325_355174_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010951661.1\|355255_356203_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010951662.1\|356655_358032_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_010951663.1\|358533_359640_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_003255717.1\|359759_360017_-	hypothetical protein	NA	NA	NA	NA
WP_049588074.1\|360355_361936_+	metallopeptidase	NA	NA	NA	NA
WP_010951666.1\|362035_362506_-	thioesterase family protein	NA	NA	NA	NA
WP_010951667.1\|362516_363482_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_010951668.1\|363648_364533_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_049588076.1\|364656_365601_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011953245.1\|365745_366693_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_020193116.1\|366696_367314_-	hypothetical protein	NA	NA	NA	NA
WP_020193117.1\|367387_368080_-	hypothetical protein	NA	NA	NA	NA
WP_049588079.1\|368218_368635_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_003255700.1\|368920_369898_+	membrane dipeptidase	NA	NA	NA	NA
WP_003255698.1\|369973_370504_+	hypothetical protein	NA	NA	NA	NA
WP_003255697.1\|370519_372580_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_010951673.1\|372758_374711_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_049588082.1\|374710_375943_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_010951675.1\|375953_376724_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_010951676.1\|377325_378057_+	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	1.1e-19	46.6
WP_010951677.1\|378121_379414_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_049588084.1\|379709_380810_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_010951679.1\|380918_382544_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.9e-70	44.5
WP_003255686.1\|382810_383041_+	hypothetical protein	NA	NA	NA	NA
WP_003255684.1\|383037_383340_+	cell division protein ZapA	NA	NA	NA	NA
WP_010951680.1\|383522_385460_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.8e-16	31.1
WP_010951681.1\|385494_386535_-	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_003255681.1\|386860_388114_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.3e-100	53.0
WP_003255680.1\|388129_389380_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_010951682.1\|389394_389730_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_010951683.1\|389726_392741_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_003255677.1\|392815_393448_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_003255675.1\|393459_394317_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_003255673.1\|394618_395818_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	3.8e-12	28.5
WP_110771781.1\|396021_396780_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_049588087.1\|397138_397714_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_010951686.1\|397734_398484_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_010951687.1\|398695_399583_-	acyltransferase	NA	NA	NA	NA
WP_010951688.1\|399764_400265_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_010951689.1\|400414_401473_+\|transposase	IS110-like element ISPpu11 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1092844 : 1100623

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010952145.1\|1092844_1093699_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	8.1e-09	32.8
WP_003255137.1\|1093701_1094166_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|1094178_1094487_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_003255133.1\|1094566_1096060_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_010952146.1\|1096235_1096961_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_003255131.1\|1096961_1097486_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_010952147.1\|1097472_1098045_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_010952148.1\|1098053_1098578_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	5.3e-27	48.1
WP_010952149.1\|1098590_1099565_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.1e-37	33.1
WP_010952150.1\|1099813_1100623_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	5.9e-25	32.5

DBSCAN-SWA_3

1733988 : 1825253

105

Pseudomonas_phage(33.9%)

tail,portal,head,tRNA,protease,terminase,integrase,capsid,holin

attL 1731168:1731196|attR 1780110:1780138

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1731168:1731196	attL	NA	NA	NA	NA
WP_162490563.1\|1733988_1734798_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	A0A291ATS8	Pandoravirus	2.9e-16	33.6
WP_003252266.1\|1734910_1735321_-	SufE family protein	NA	NA	NA	NA
WP_010952615.1\|1735317_1736523_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.9e-68	36.8
WP_004574732.1\|1736604_1737639_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_003252272.1\|1737670_1738018_-	ArsC family reductase	NA	NA	NA	NA
WP_010952616.1\|1738085_1739192_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A0U4JIT5	Pseudomonas_phage	2.1e-142	70.1
WP_010952617.1\|1739172_1739415_-	excisionase	NA	NA	NA	NA
WP_010952618.1\|1739448_1739766_-	hypothetical protein	NA	NA	NA	NA
WP_049587403.1\|1739822_1740305_-	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	4.5e-57	63.4
WP_010952620.1\|1740301_1740685_-	DUF2591 family protein	A0A125RNP6	Pseudomonas_phage	1.2e-12	37.8
WP_010952621.1\|1740681_1740909_-	hypothetical protein	NA	NA	NA	NA
WP_049587405.1\|1740905_1741163_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	1.1e-20	66.3
WP_010952622.1\|1741159_1741912_-	hypothetical protein	W6MWX6	Pseudomonas_phage	2.6e-67	55.5
WP_051122524.1\|1741995_1742862_-	hypothetical protein	NA	NA	NA	NA
WP_010952625.1\|1743290_1744211_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	8.2e-108	59.7
WP_079732494.1\|1744277_1744862_-	hypothetical protein	NA	NA	NA	NA
WP_028697923.1\|1744969_1745191_+	hypothetical protein	NA	NA	NA	NA
WP_010952627.1\|1745214_1745760_-	hypothetical protein	J9Q748	Salmonella_phage	1.3e-20	36.2
WP_126404382.1\|1745885_1746119_+	hypothetical protein	NA	NA	NA	NA
WP_010952628.1\|1746078_1746465_-	hypothetical protein	NA	NA	NA	NA
WP_010952629.1\|1746546_1747005_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	5.8e-46	60.5
WP_010952630.1\|1747001_1747271_-	hypothetical protein	NA	NA	NA	NA
WP_049587408.1\|1747289_1747673_-	helix-turn-helix transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	2.8e-17	50.9
WP_049587410.1\|1748038_1748233_-	hypothetical protein	NA	NA	NA	NA
WP_010952632.1\|1748229_1748667_-	tellurite resistance protein	A0A2H4P7E3	Pseudomonas_phage	2.2e-34	56.9
WP_049587412.1\|1749025_1749319_+	DUF1654 domain-containing protein	A0A0S2SYC9	Pseudomonas_phage	8.9e-16	48.5
WP_010952633.1\|1749383_1750235_-	Cro/Cl family transcriptional regulator	A0A0S2SYF7	Pseudomonas_phage	1.0e-75	52.1
WP_010952634.1\|1750323_1750500_+	helix-turn-helix domain-containing protein	A0A0S2SYB8	Pseudomonas_phage	3.2e-13	62.7
WP_010952635.1\|1750641_1751496_+	replication protein	W6MYB0	Pseudomonas_phage	5.4e-37	34.1
WP_049587416.1\|1751485_1752298_+	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	2.3e-98	67.9
WP_010952637.1\|1752300_1752597_+	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	2.9e-30	69.7
WP_010952638.1\|1752593_1753016_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	2.9e-44	67.9
WP_049587419.1\|1753012_1754302_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	6.1e-117	53.4
WP_010952640.1\|1754298_1754619_+	hypothetical protein	NA	NA	NA	NA
WP_049587420.1\|1754615_1754933_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	2.4e-30	61.0
WP_010952642.1\|1754943_1755285_+	antitermination protein Q	A0A2D1GNB4	Pseudomonas_phage	1.0e-47	80.7
WP_010952643.1\|1755484_1755808_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	7.7e-29	63.2
WP_010952644.1\|1755868_1756051_+	hypothetical protein	NA	NA	NA	NA
WP_010952645.1\|1756041_1756410_+	HNH endonuclease	H2BDK0	Pseudomonas_virus	4.9e-19	59.8
WP_010952646.1\|1756537_1756921_+\|terminase	phage terminase small subunit	Q9XJT7	Pseudomonas_phage	3.9e-19	44.2
WP_079732495.1\|1756920_1758630_+\|terminase	terminase large subunit	A0A0R6PKH7	Moraxella_phage	5.2e-233	68.2
WP_010952648.1\|1758641_1758806_+	hypothetical protein	NA	NA	NA	NA
WP_079732496.1\|1758798_1760133_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	6.9e-132	56.1
WP_010952650.1\|1760129_1760831_+\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	3.2e-72	62.4
WP_049587422.1\|1760840_1762097_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	3.9e-92	48.8
WP_010952652.1\|1762138_1762363_+	hypothetical protein	NA	NA	NA	NA
WP_010952653.1\|1762366_1762843_+\|head,tail	phage gp6-like head-tail connector protein	G3ENA1	Psychrobacter_phage	2.9e-16	35.7
WP_010952654.1\|1762842_1763184_+\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	4.5e-19	49.1
WP_010952655.1\|1763176_1763662_+	HK97 gp10 family phage protein	Q9MCA7	Pseudomonas_phage	3.3e-55	76.2
WP_010952656.1\|1763658_1764027_+	DUF3168 domain-containing protein	Q9MCA6	Pseudomonas_phage	1.8e-37	61.5
WP_010952657.1\|1764092_1764827_+\|tail	tail protein	Q9MCA5	Pseudomonas_phage	1.5e-51	50.2
WP_010952658.1\|1764835_1765306_+\|tail	phage tail assembly chaperone family protein, TAC	K7PJU9	Enterobacteria_phage	7.6e-33	61.4
WP_162490562.1\|1765374_1765530_+	hypothetical protein	NA	NA	NA	NA
WP_010952660.1\|1765591_1765915_+	superinfection immunity protein	A0A067Y187	Escherichia_phage	3.2e-06	42.0
WP_010952661.1\|1765961_1768403_+\|tail	tail tape measure protein	D4FUM0	Pseudomonas_phage	9.4e-135	42.7
WP_010952662.1\|1768399_1768879_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	4.4e-44	54.7
WP_049587423.1\|1768875_1769256_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	6.1e-25	45.6
WP_010952663.1\|1769252_1772252_+	hypothetical protein	A0A286S259	Klebsiella_phage	4.7e-221	41.8
WP_010952664.1\|1772261_1772717_+	hypothetical protein	B5WZT5	Pseudomonas_phage	4.4e-46	59.1
WP_010952665.1\|1772817_1774809_+	exo-alpha-sialidase	A0A2R3UAY9	Myoviridae_environmental_samples	3.8e-166	52.0
WP_010952666.1\|1774820_1775897_+	hypothetical protein	NA	NA	NA	NA
WP_049587424.1\|1775957_1776401_+	structural protein P5	A0A2R3UAM8	Myoviridae_environmental_samples	6.4e-34	52.4
WP_010952668.1\|1776397_1776898_+	DUF2514 domain-containing protein	A0A2H4J3Q6	uncultured_Caudovirales_phage	2.2e-30	57.3
WP_049587425.1\|1776963_1777266_+	hypothetical protein	A0A2H4JGS3	uncultured_Caudovirales_phage	6.8e-11	47.9
WP_010952669.1\|1777557_1777857_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_010952670.1\|1777865_1778144_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	7.7e-09	49.2
WP_049587427.1\|1778394_1780041_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_010952672.1\|1780146_1781343_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
1780110:1780138	attR	NA	NA	NA	NA
WP_010952673.1\|1781373_1784076_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_003252286.1\|1784117_1784900_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_003252287.1\|1785246_1785984_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_010952674.1\|1786169_1787033_+	elongation factor Ts	NA	NA	NA	NA
WP_003252294.1\|1787214_1787958_+	UMP kinase	NA	NA	NA	NA
WP_003252296.1\|1787954_1788512_+	ribosome recycling factor	NA	NA	NA	NA
WP_010952675.1\|1788527_1789283_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	3.4e-19	38.8
WP_010952676.1\|1789282_1790098_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_049587431.1\|1790094_1791285_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_049587451.1\|1791356_1792709_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_010952679.1\|1792782_1795143_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_003252311.1\|1795187_1795691_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_003252312.1\|1795692_1796748_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_003252314.1\|1796862_1797303_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_010952681.1\|1797299_1798076_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_010952682.1\|1798077_1799205_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_003252319.1\|1799206_1799830_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	8.0e-22	41.5
WP_010952683.1\|1800016_1803541_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	3.8e-193	35.8
WP_003252323.1\|1803647_1804595_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_010952684.1\|1804766_1806050_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_003252329.1\|1806317_1807946_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.0e-158	53.3
WP_010952685.1\|1807949_1808795_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.1e-50	42.0
WP_003252333.1\|1808949_1810239_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.9e-139	59.6
WP_004576849.1\|1810407_1810689_+	cell division protein FtsB	NA	NA	NA	NA
WP_010952686.1\|1810685_1811393_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_010952687.1\|1811520_1812417_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014592131.1\|1812524_1813637_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.0e-33	28.5
WP_003252340.1\|1813645_1814500_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_003252342.1\|1814612_1815086_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_010952689.1\|1815082_1816141_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_010952690.1\|1816128_1816878_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.5e-67	52.6
WP_003252348.1\|1816913_1817552_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-40	51.2
WP_049588177.1\|1817789_1818647_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.9e-13	36.2
WP_003252351.1\|1818755_1819763_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_010952386.1\|1820237_1821659_+	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	7.2e-18	27.6
WP_003252355.1\|1822215_1822539_-	ferredoxin family protein	NA	NA	NA	NA
WP_010952693.1\|1822679_1825253_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	9.9e-26	23.3

DBSCAN-SWA_4

2171867 : 2176928

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010952945.1\|2171867_2172428_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.5e-56	68.4
WP_010952946.1\|2172420_2173503_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	1.1e-103	64.7
WP_010952947.1\|2173528_2174032_-	phosphatase	NA	NA	NA	NA
WP_049586838.1\|2174036_2174750_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.0e-118	89.9
WP_049586835.1\|2174773_2175244_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.0e-66	81.4
WP_010952950.1\|2175258_2176542_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.1e-198	85.0
WP_049586833.1\|2176571_2176928_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	1.6e-38	64.9

DBSCAN-SWA_5

2584639 : 2617474

Ralstonia_phage(71.43%)

head,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003250234.1\|2584639_2585494_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.4e-29	34.6
WP_110771734.1\|2586647_2589194_+	DNA-dependent RNA polymerase	A0A2R2ZGE5	Ralstonia_phage	0.0e+00	65.0
WP_154070656.1\|2589716_2589893_+	hypothetical protein	A0A2D2W4Y9	Ralstonia_phage	1.8e-08	58.3
WP_049587541.1\|2589920_2590634_+	single-stranded DNA-binding protein	A0A2R2ZGF7	Ralstonia_phage	3.5e-66	62.7
WP_010953241.1\|2590656_2591082_+	endodeoxyribonuclease	A0A2D2W4Y6	Ralstonia_phage	5.6e-51	71.7
WP_010953242.1\|2591084_2591534_+	N-acetylmuramoyl-L-alanine amidase	A0A2R2ZGC0	Ralstonia_phage	6.7e-63	73.6
WP_061405615.1\|2591805_2593257_+	bifunctional DNA primase/helicase	L7TLT7	Rhizobium_phage	2.4e-178	62.7
WP_028692660.1\|2593271_2593499_+	hypothetical protein	NA	NA	NA	NA
WP_049587546.1\|2593502_2593913_+	hypothetical protein	NA	NA	NA	NA
WP_061405616.1\|2593916_2594111_+	hypothetical protein	NA	NA	NA	NA
WP_154070657.1\|2594168_2594336_+	hypothetical protein	NA	NA	NA	NA
WP_110771736.1\|2594354_2594957_+	hypothetical protein	A0A2D2W501	Ralstonia_phage	1.1e-44	55.6
WP_049587548.1\|2594946_2595141_+	hypothetical protein	NA	NA	NA	NA
WP_049587549.1\|2595152_2597204_+	DNA polymerase	A0A2R2ZGG6	Ralstonia_phage	1.0e-219	58.9
WP_009682626.1\|2597217_2597433_+	hypothetical protein	A0A2R2ZGG1	Ralstonia_phage	1.6e-17	67.2
WP_010953247.1\|2597467_2597677_+	hypothetical protein	NA	NA	NA	NA
WP_061405618.1\|2597625_2598378_+	putative phage exonuclease	A0A2R2ZGE9	Ralstonia_phage	1.7e-82	59.6
WP_079732513.1\|2598396_2598651_+	DUF3310 domain-containing protein	Q774Z7	Bordetella_phage	4.8e-10	55.2
WP_010953249.1\|2598661_2600047_+	hypothetical protein	NA	NA	NA	NA
WP_010953250.1\|2600101_2600296_+	hypothetical protein	NA	NA	NA	NA
WP_010953251.1\|2600523_2602098_+\|head,tail	head-tail connector protein	A0A2R2ZGG8	Ralstonia_phage	9.6e-165	60.3
WP_010953253.1\|2602236_2603016_+\|capsid	phage capsid assembly protein	A0A2D2W594	Ralstonia_phage	4.7e-48	44.5
WP_049587553.1\|2603043_2603484_+	DUF1353 domain-containing protein	A0A2K9VHJ4	Pseudomonas_phage	2.4e-25	50.8
WP_049587555.1\|2603498_2603708_+	hypothetical protein	NA	NA	NA	NA
WP_010953254.1\|2603869_2604838_+\|capsid	phage capsid protein	L7TJ83	Rhizobium_phage	1.1e-91	57.0
WP_010953255.1\|2604899_2605487_+\|tail	tail protein	A0A2R2ZGD2	Ralstonia_phage	4.7e-48	50.8
WP_010953256.1\|2605490_2607836_+\|tail	tail protein	A0A2D2W513	Ralstonia_phage	6.3e-245	54.7
WP_049587557.1\|2607891_2608305_+	hypothetical protein	NA	NA	NA	NA
WP_010953257.1\|2608289_2608850_+	hypothetical protein	NA	NA	NA	NA
WP_010953258.1\|2608859_2611049_+	hypothetical protein	A0A2D2W5A9	Ralstonia_phage	4.6e-181	50.7
WP_010953259.1\|2611061_2615771_+	transglycosylase SLT domain-containing protein	A0A2R2ZGA5	Ralstonia_phage	0.0e+00	60.8
WP_010953260.1\|2615833_2617474_+\|tail	tail protein	L7TLW7	Rhizobium_phage	4.2e-22	37.7

DBSCAN-SWA_6

2629088 : 2692880

Bacillus_virus(10.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003250242.1\|2629088_2630372_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.7e-138	58.3
WP_010953272.1\|2630535_2632932_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.3e-217	52.1
WP_003250246.1\|2633084_2633357_+	DNA-binding protein HU-beta	A3E2K9	Sodalis_phage	1.7e-21	62.9
WP_010953273.1\|2633538_2635410_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_049587660.1\|2635526_2636567_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_003250254.1\|2636744_2637023_+	lipoprotein	NA	NA	NA	NA
WP_010953275.1\|2637037_2637817_+	CHAD domain-containing protein	NA	NA	NA	NA
WP_010953276.1\|2637894_2638692_+	thioesterase family protein	NA	NA	NA	NA
WP_010953277.1\|2638733_2639102_-	DUF962 domain-containing protein	NA	NA	NA	NA
WP_010953278.1\|2639177_2640656_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.0e-30	32.0
WP_010953279.1\|2640782_2641580_-	TatD family hydrolase	NA	NA	NA	NA
WP_010953280.1\|2641737_2643144_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_010953281.1\|2643256_2643694_+	DoxX family protein	NA	NA	NA	NA
WP_010953282.1\|2643942_2644251_+	hypothetical protein	NA	NA	NA	NA
WP_010953283.1\|2644262_2644751_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_049587564.1\|2644814_2647322_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_010953285.1\|2647318_2648005_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-35	38.4
WP_010953286.1\|2648015_2648621_+	arylesterase	NA	NA	NA	NA
WP_014591666.1\|2648679_2648970_+	hypothetical protein	NA	NA	NA	NA
WP_010953288.1\|2649083_2650061_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_003250288.1\|2650194_2650446_-	hypothetical protein	NA	NA	NA	NA
WP_003250290.1\|2650953_2651235_+	N-acetyltransferase	NA	NA	NA	NA
WP_014591663.1\|2651304_2652381_-	3-deoxy-7-phosphoheptulonate synthase	A0A2I6UFP9	Klebsiella_phage	2.2e-83	50.8
WP_010953292.1\|2652613_2653561_+	putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_003250295.1\|2653685_2654183_+	universal stress protein	NA	NA	NA	NA
WP_010953293.1\|2654311_2655286_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_172835028.1\|2655455_2656274_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_010953294.1\|2656270_2657611_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	4.1e-47	32.6
WP_010953295.1\|2657819_2658800_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_010953296.1\|2658799_2660335_-	inactive transglutaminase family protein	NA	NA	NA	NA
WP_010953297.1\|2660340_2660877_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_003250308.1\|2661183_2661900_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010953298.1\|2661896_2662787_+	methylisocitrate lyase	NA	NA	NA	NA
WP_003250313.1\|2662847_2663975_+	2-methylcitrate synthase	NA	NA	NA	NA
WP_010953299.1\|2664137_2666726_+	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_010953300.1\|2666791_2667982_+	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_010953301.1\|2668148_2669633_+	2-methylcitrate dehydratase	NA	NA	NA	NA
WP_010953302.1\|2669707_2672317_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_162490568.1\|2672722_2673205_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_003250327.1\|2673215_2673572_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_010953305.1\|2674017_2674749_+	zeta toxin family protein	NA	NA	NA	NA
WP_004573881.1\|2675054_2676134_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_010953306.1\|2676371_2676680_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_003250344.1\|2676679_2676994_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_010953307.1\|2676994_2677663_+	response regulator transcription factor	NA	NA	NA	NA
WP_010953308.1\|2677659_2678979_+	sensor histidine kinase	NA	NA	NA	NA
WP_010953309.1\|2679259_2680414_+	HPP family protein	NA	NA	NA	NA
WP_010953310.1\|2680387_2681254_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010953311.1\|2681434_2683324_+	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	9.7e-55	29.7
WP_049587571.1\|2683436_2684507_-	cell division protein ZapE	NA	NA	NA	NA
WP_020193386.1\|2684639_2684882_-	hypothetical protein	NA	NA	NA	NA
WP_010953314.1\|2685333_2687721_-	hybrid sensor histidine kinase/response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	4.9e-11	26.5
WP_003250360.1\|2687734_2688196_-	response regulator	NA	NA	NA	NA
WP_049587576.1\|2688211_2690458_-	GAF domain-containing protein	Q6XLU9	Feldmannia_irregularis_virus	1.6e-16	25.1
WP_049587577.1\|2690726_2691254_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_010953317.1\|2691284_2691821_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_010953318.1\|2691839_2692373_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_010953319.1\|2692376_2692880_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_7

3102813 : 3110180

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010953629.1\|3102813_3103476_+	response regulator	W8CYM9	Bacillus_phage	4.2e-29	37.1
WP_010953630.1\|3103472_3104837_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_010953631.1\|3104849_3105551_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.1e-104	79.4
WP_010953632.1\|3105564_3106035_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	5.7e-57	69.2
WP_010953633.1\|3106063_3107347_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	4.9e-175	75.1
WP_010953634.1\|3107368_3107716_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	8.6e-34	61.1
WP_154070658.1\|3107928_3108102_+	hypothetical protein	NA	NA	NA	NA
WP_049586247.1\|3108279_3108615_-	hypothetical protein	NA	NA	NA	NA
WP_010953638.1\|3108689_3109154_-	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_010953639.1\|3109322_3110180_-	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	3.7e-70	50.5

DBSCAN-SWA_8

3419452 : 3494684

uncultured_Caudovirales_phage(64.52%)

tail,portal,head,lysis,protease,terminase,plate,capsid,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010953932.1\|3419452_3420184_-	peptidase S24	A8CGC0	Salmonella_phage	6.5e-31	38.9
WP_010953933.1\|3420262_3420526_+	hypothetical protein	A0A2H4J0V8	uncultured_Caudovirales_phage	5.0e-10	47.1
WP_049586116.1\|3421123_3421642_+	hypothetical protein	NA	NA	NA	NA
WP_010953936.1\|3421634_3421853_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_010953937.1\|3421842_3424053_+	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	1.4e-182	45.9
WP_010953938.1\|3424049_3424412_+	hypothetical protein	NA	NA	NA	NA
WP_010953939.1\|3424923_3425271_+\|holin	holin	B5TK61	Pseudomonas_phage	3.3e-41	71.3
WP_010953940.1\|3425435_3426047_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	5.2e-42	50.5
WP_010953941.1\|3426051_3428088_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	2.1e-297	78.2
WP_010953942.1\|3428089_3428296_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	1.6e-19	70.6
WP_010953943.1\|3428292_3429786_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	4.8e-214	75.5
WP_010953944.1\|3429782_3430946_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	3.4e-135	69.1
WP_010953945.1\|3430948_3431296_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.7e-29	62.4
WP_010953946.1\|3431357_3432353_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.6e-133	70.3
WP_049586114.1\|3432355_3432670_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	2.9e-28	59.6
WP_010953948.1\|3432666_3433329_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	2.3e-72	63.0
WP_010953949.1\|3433321_3433852_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.9e-32	48.7
WP_010953950.1\|3433848_3434451_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	3.5e-51	66.4
WP_010953951.1\|3434493_3434763_+	hypothetical protein	NA	NA	NA	NA
WP_010953952.1\|3434765_3435092_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	8.1e-34	65.7
WP_010953953.1\|3435088_3436069_+\|plate	baseplate J/gp47 family protein	Q37840	Escherichia_phage	2.4e-49	38.9
WP_010953954.1\|3436065_3436878_+\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	5.3e-18	37.3
WP_010953955.1\|3436874_3437753_+\|tail	phage tail protein	A2I2X8	Vibrio_virus	6.8e-19	37.6
WP_010953956.1\|3437759_3438500_+	hypothetical protein	NA	NA	NA	NA
WP_010953957.1\|3438522_3438984_+	hypothetical protein	A0A077K9S5	Ralstonia_phage	2.6e-17	47.4
WP_010953958.1\|3439078_3440245_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	2.5e-186	84.2
WP_010953959.1\|3440257_3440767_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	3.4e-63	68.5
WP_010953960.1\|3440812_3441109_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_010953961.1\|3441241_3444511_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.3e-70	34.5
WP_010953962.1\|3444520_3445366_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.9e-79	55.4
WP_010953963.1\|3445340_3445547_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.5e-17	62.7
WP_010953964.1\|3445606_3446650_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	2.1e-144	72.0
WP_010953965.1\|3446686_3447238_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	7.4e-64	68.1
WP_049586107.1\|3447234_3447795_+\|lysis	lysis protein	A0A2H4JBH9	uncultured_Caudovirales_phage	4.2e-30	50.6
WP_049586105.1\|3447874_3448531_-	hypothetical protein	NA	NA	NA	NA
WP_049586103.1\|3448874_3450080_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_049586307.1\|3450220_3450520_-	hypothetical protein	NA	NA	NA	NA
WP_010953968.1\|3450968_3453446_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_010953969.1\|3453558_3453834_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_010953970.1\|3453937_3455890_-	acetoacetate--CoA ligase	NA	NA	NA	NA
WP_010953971.1\|3455982_3456462_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_010953972.1\|3456517_3457288_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_010953973.1\|3457298_3458690_-	GntP family permease	NA	NA	NA	NA
WP_049586101.1\|3458915_3460298_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_010953975.1\|3460357_3461374_-	ABC transporter permease	NA	NA	NA	NA
WP_010953976.1\|3461373_3462432_-	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_010953977.1\|3462428_3464357_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003248318.1\|3464370_3464652_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_010953978.1\|3464732_3465794_-	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	1.5e-84	49.5
WP_049586097.1\|3466348_3466900_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_019438461.1\|3466948_3467257_-	hypothetical protein	NA	NA	NA	NA
WP_020190937.1\|3467338_3468637_-	MFS transporter	NA	NA	NA	NA
WP_010953981.1\|3469063_3469939_+	AEC family transporter	NA	NA	NA	NA
WP_049586093.1\|3470071_3472489_-	TonB-dependent receptor	NA	NA	NA	NA
WP_049586091.1\|3472638_3473601_-	FecR domain-containing protein	NA	NA	NA	NA
WP_010953984.1\|3473600_3474107_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_010953985.1\|3474195_3476712_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-160	35.2
WP_010953986.1\|3476879_3477965_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_049586088.1\|3478060_3478579_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_010953988.1\|3478722_3481218_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_049586086.1\|3481214_3482123_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_010953989.1\|3482119_3485923_-	hypothetical protein	NA	NA	NA	NA
WP_010953990.1\|3485953_3486670_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_010953991.1\|3486666_3488010_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004576638.1\|3488006_3488729_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_049586082.1\|3488753_3491351_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	3.2e-88	30.2
WP_003248350.1\|3491347_3492418_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_010953993.1\|3492381_3494202_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003248355.1\|3494201_3494684_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_9

4383050 : 4428765

Pseudomonas_phage(53.33%)

holin,head,portal,protease,terminase,integrase,plate,capsid,tail

attL 4380255:4380270|attR 4432574:4432589

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4380255:4380270	attL	NA	NA	NA	NA
WP_010954685.1\|4383050_4383854_-\|tail	tail protein	A0A2H4J9C3	uncultured_Caudovirales_phage	1.8e-21	52.5
WP_010954686.1\|4383856_4384501_-	YmfQ family protein	NA	NA	NA	NA
WP_110771850.1\|4384491_4385523_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.9e-69	42.3
WP_010954688.1\|4385524_4385911_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	1.0e-27	52.5
WP_010954689.1\|4385907_4386408_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.2e-52	64.8
WP_010954690.1\|4386416_4387526_-	hypothetical protein	B5TK72	Pseudomonas_phage	3.6e-102	55.3
WP_010954691.1\|4387529_4388792_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	4.6e-61	36.6
WP_010954692.1\|4388784_4390740_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	3.0e-107	51.2
WP_061405679.1\|4390732_4390924_-	hypothetical protein	NA	NA	NA	NA
WP_049587943.1\|4390869_4391166_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	5.4e-29	72.0
WP_049587942.1\|4391162_4391510_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	3.6e-32	53.0
WP_010951893.1\|4391592_4393014_-	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	4.2e-18	27.6
WP_010954695.1\|4393483_4394971_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	5.9e-164	59.5
WP_010954696.1\|4394970_4395174_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.3e-09	59.6
WP_049587778.1\|4395179_4395773_-	hypothetical protein	B5TK65	Pseudomonas_phage	3.2e-52	51.5
WP_010954699.1\|4395802_4396318_-	hypothetical protein	NA	NA	NA	NA
WP_010954700.1\|4396310_4396685_-\|head,tail	head-tail adaptor protein	U5P0R0	Shigella_phage	1.3e-16	35.7
WP_172835030.1\|4396687_4397203_-	hypothetical protein	A4JX03	Burkholderia_virus	2.1e-28	43.3
WP_110771832.1\|4397241_4397490_-	hypothetical protein	NA	NA	NA	NA
WP_049587776.1\|4397542_4398856_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	1.2e-147	61.2
WP_010954704.1\|4398917_4399889_-	S49 family peptidase	A4JX00	Burkholderia_virus	1.8e-92	55.6
WP_010954705.1\|4399885_4401157_-\|portal	phage portal protein	A4JWZ9	Burkholderia_virus	2.9e-151	64.9
WP_010954706.1\|4401159_4401348_-	hypothetical protein	Q8W6U8	Burkholderia_virus	1.3e-07	63.5
WP_010954707.1\|4401344_4403153_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.5e-116	41.3
WP_010954708.1\|4403112_4403580_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.6e-43	59.7
WP_010954709.1\|4403715_4404036_-	HNH endonuclease	K7PM05	Enterobacterial_phage	7.4e-24	48.2
WP_010954710.1\|4404039_4404363_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.0e-28	64.2
WP_061405680.1\|4404521_4405151_+	hypothetical protein	NA	NA	NA	NA
WP_010954712.1\|4405299_4405560_-	hypothetical protein	NA	NA	NA	NA
WP_010954713.1\|4405543_4406215_-	hypothetical protein	J7HXH6	Pseudomonas_phage	4.4e-58	53.5
WP_010954714.1\|4406227_4406548_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	2.0e-21	45.6
WP_010954715.1\|4406544_4407843_-\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	9.2e-121	54.8
WP_049587773.1\|4407839_4408268_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	2.1e-50	76.5
WP_154070660.1\|4408264_4408435_-	hypothetical protein	NA	NA	NA	NA
WP_010954717.1\|4408431_4408728_-	DUF1364 domain-containing protein	A5VW86	Enterobacteria_phage	9.9e-31	68.1
WP_010954718.1\|4408709_4408916_-	hypothetical protein	NA	NA	NA	NA
WP_010954719.1\|4408915_4410313_-	AAA family ATPase	A0A125RNK2	Pseudomonas_phage	2.5e-124	52.8
WP_010954720.1\|4410309_4411140_-	replication protein	W6MYB0	Pseudomonas_phage	1.5e-28	33.6
WP_010954721.1\|4411464_4411677_-	helix-turn-helix domain-containing protein	A0A125RNS7	Pseudomonas_phage	1.5e-25	80.6
WP_010954722.1\|4411764_4412412_+	helix-turn-helix transcriptional regulator	A0A0H5BBV1	Pseudomonas_phage	2.1e-49	52.3
WP_010954723.1\|4412469_4412883_+	HIRAN domain-containing protein	A0A127KNU7	Pseudomonas_phage	5.5e-11	45.7
WP_010954724.1\|4412926_4413163_+	hypothetical protein	NA	NA	NA	NA
WP_049587768.1\|4413329_4414322_+	hypothetical protein	NA	NA	NA	NA
WP_049587766.1\|4414324_4414891_+	hypothetical protein	S5FXQ0	Shigella_phage	5.4e-17	36.4
WP_049587764.1\|4415058_4415400_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_010954726.1\|4415399_4415648_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_010954727.1\|4415797_4416058_+	DUF1654 domain-containing protein	H2BD60	Pseudomonas_phage	1.9e-06	43.1
WP_049587762.1\|4416429_4416639_+	hypothetical protein	A0A0H5ARH3	Pseudomonas_phage	5.4e-15	65.0
WP_049587761.1\|4417275_4417659_+	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	9.8e-23	60.0
WP_010954732.1\|4417678_4417948_+	hypothetical protein	NA	NA	NA	NA
WP_010954733.1\|4417944_4418403_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	9.0e-47	61.2
WP_010954734.1\|4418484_4418835_+	hypothetical protein	NA	NA	NA	NA
WP_010954735.1\|4418848_4419127_-	hypothetical protein	NA	NA	NA	NA
WP_049587760.1\|4419233_4419785_+	hypothetical protein	NA	NA	NA	NA
WP_010954737.1\|4419799_4420183_+	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	2.3e-27	47.3
WP_010954738.1\|4420250_4421912_+	DNA cytosine methyltransferase	A0A2I7QRH3	Vibrio_phage	6.5e-103	44.9
WP_049587756.1\|4421920_4422598_+	hypothetical protein	NA	NA	NA	NA
WP_049587754.1\|4422647_4422947_-	hypothetical protein	NA	NA	NA	NA
WP_010954740.1\|4423112_4423496_+	hypothetical protein	Q8W6R0	Burkholderia_virus	3.1e-24	47.1
WP_010954741.1\|4423767_4424091_+	hypothetical protein	A0A2H4J0N7	uncultured_Caudovirales_phage	5.9e-53	91.6
WP_010954742.1\|4424087_4424480_+	DUF2591 domain-containing protein	A0A1B0VMD7	Pseudomonas_phage	3.2e-13	35.3
WP_049587747.1\|4425762_4426080_+	hypothetical protein	NA	NA	NA	NA
WP_010954745.1\|4426119_4426365_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_010954746.1\|4426366_4427416_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.1e-100	56.1
WP_010954747.1\|4427745_4428765_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	6.9e-23	26.0
4432574:4432589	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4463980 : 4496650

uncultured_Caudovirales_phage(18.18%)

integrase,holin,transposase

attL 4491609:4491623|attR 4497748:4497762

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010954773.1\|4463980_4465954_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-26	29.1
WP_010954774.1\|4466257_4467619_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	8.3e-64	40.2
WP_110771825.1\|4467845_4469117_+	chloride channel protein	NA	NA	NA	NA
WP_010954776.1\|4469218_4469824_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_010954777.1\|4469980_4471189_-	MFS transporter	NA	NA	NA	NA
WP_049587738.1\|4471998_4472793_+	OBAP family protein	NA	NA	NA	NA
WP_010954779.1\|4473459_4473786_+	hypothetical protein	NA	NA	NA	NA
WP_010954780.1\|4473999_4475535_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.7e-118	48.0
WP_004575513.1\|4475598_4475934_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010954781.1\|4475930_4476251_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_049587734.1\|4476465_4476867_+	NUDIX domain-containing protein	A0A0G2SS60	Proteus_phage	5.7e-05	39.7
WP_010954783.1\|4476872_4477991_-	HAMP domain-containing histidine kinase	A0A1B0VMK3	Pseudomonas_phage	4.1e-101	50.7
WP_010954784.1\|4478138_4478501_+	response regulator	NA	NA	NA	NA
WP_010954785.1\|4478649_4479852_+	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	6.7e-09	28.6
WP_010954786.1\|4479865_4480099_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA
WP_010954787.1\|4480131_4481457_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.2e-05	36.1
WP_010954789.1\|4481994_4482981_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010954790.1\|4483000_4483462_-	RidA family protein	NA	NA	NA	NA
WP_010954791.1\|4483669_4484356_+	hydrolase	NA	NA	NA	NA
WP_126404343.1\|4485121_4486126_+	hypothetical protein	NA	NA	NA	NA
WP_010954361.1\|4486395_4486716_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004575513.1\|4486712_4487048_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010954362.1\|4487111_4488647_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	6.6e-118	46.1
WP_010954794.1\|4489217_4491863_-	AAA family ATPase	NA	NA	NA	NA
4491609:4491623	attL	NA	NA	NA	NA
WP_126404341.1\|4492219_4492900_+	hypothetical protein	NA	NA	NA	NA
WP_010954796.1\|4493378_4493639_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_010954007.1\|4493707_4495240_-\|transposase	IS66-like element ISPpu13 family transposase	S5VTD3	Leptospira_phage	3.2e-88	37.1
WP_010954797.1\|4495258_4495615_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.7e-16	37.3
WP_010954798.1\|4495690_4496650_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	2.5e-131	74.9
4497748:4497762	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4500014 : 4510061

uncultured_Caudovirales_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010954800.1\|4500014_4501061_-	DNA cytosine methyltransferase	Q83VT0	Escherichia_phage	5.1e-21	29.5
WP_003251184.1\|4501536_4502208_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_010954802.1\|4502371_4503751_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_003251188.1\|4503848_4504241_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-53	79.8
WP_010954803.1\|4504242_4504602_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.6e-37	66.7
WP_003251193.1\|4504601_4504898_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.0e-23	58.6
WP_010954804.1\|4504894_4505230_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	7.5e-43	75.7
WP_010954805.1\|4505226_4506228_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.6e-157	80.8
WP_049587789.1\|4506322_4507282_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010954807.1\|4507388_4508780_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_010954808.1\|4508780_4510061_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-96	54.4

DBSCAN-SWA_12

4604170 : 4672748

Bacillus_phage(22.22%)

transposase,head,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010954867.1\|4604170_4604581_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_010954868.1\|4604584_4606351_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_010954869.1\|4606314_4607331_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_010954870.1\|4607327_4608125_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_003251351.1\|4608174_4609512_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_051122586.1\|4609513_4610389_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_010954872.1\|4610522_4611038_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_010954873.1\|4613144_4613576_+	DUF1795 domain-containing protein	NA	NA	NA	NA
WP_010954874.1\|4613629_4618222_+	RHS domain-containing protein	O64023	Bacillus_phage	7.2e-35	49.0
WP_061405684.1\|4618245_4618731_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_164721822.1\|4619178_4619610_+	hypothetical protein	NA	NA	NA	NA
WP_061405685.1\|4620990_4621407_+	putative phosphotriesterase	NA	NA	NA	NA
WP_126404339.1\|4624416_4624878_+	hypothetical protein	NA	NA	NA	NA
WP_010954877.1\|4625970_4627503_-\|transposase	IS66-like element ISPpu15 family transposase	S5VTD3	Leptospira_phage	3.8e-81	34.7
WP_079732590.1\|4627521_4627878_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.6e-17	42.3
WP_079732543.1\|4627957_4628680_+	RHS repeat-associated core domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	2.9e-23	51.5
WP_049588243.1\|4628670_4629237_+	hypothetical protein	NA	NA	NA	NA
WP_079732591.1\|4629378_4629558_+	RHS repeat protein	NA	NA	NA	NA
WP_061405686.1\|4629581_4629728_+	protein of unknown function	O64023	Bacillus_phage	4.0e-09	58.7
WP_010954879.1\|4629740_4630226_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_010954880.1\|4631081_4631357_+	hypothetical protein	NA	NA	NA	NA
WP_049588241.1\|4631717_4632395_+	DsbA family protein	NA	NA	NA	NA
WP_010954882.1\|4632692_4633253_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_010954883.1\|4633286_4635110_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003251380.1\|4635116_4635755_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_010954884.1\|4635818_4636208_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010954885.1\|4636315_4636759_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010954886.1\|4636769_4637156_-	DUF488 family protein	NA	NA	NA	NA
WP_010954887.1\|4637284_4638901_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_010954888.1\|4639081_4639777_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_003251394.1\|4639864_4640362_-	PaaI family thioesterase	NA	NA	NA	NA
WP_010954889.1\|4640419_4641802_-	amino acid permease	NA	NA	NA	NA
WP_003251398.1\|4642057_4642954_+	transcriptional regulator GcvA	NA	NA	NA	NA
WP_010954890.1\|4643133_4644384_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_010954891.1\|4644387_4644690_-	hypothetical protein	NA	NA	NA	NA
WP_049588238.1\|4644936_4645362_+	hypothetical protein	NA	NA	NA	NA
WP_010954893.1\|4645435_4647547_+	elongation factor G	A0A2K9L6L3	Tupanvirus	7.3e-43	25.5
WP_049588236.1\|4647677_4649120_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.4e-85	41.1
WP_010954894.1\|4649203_4650913_-	S8/S53 family peptidase	NA	NA	NA	NA
WP_010954895.1\|4650966_4652142_-	hypothetical protein	NA	NA	NA	NA
WP_172835031.1\|4652267_4653032_+	secretin	NA	NA	NA	NA
WP_010954897.1\|4653522_4654848_+	isocitrate lyase	NA	NA	NA	NA
WP_172835032.1\|4655138_4655801_+	lysoplasmalogenase	NA	NA	NA	NA
WP_003251427.1\|4656184_4656598_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_003251429.1\|4656607_4657285_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_010954900.1\|4657364_4659146_+	NADH-quinone oxidoreductase subunit C/D	NA	NA	NA	NA
WP_003251433.1\|4659148_4659646_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_010954901.1\|4659642_4661004_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_010954902.1\|4661136_4663851_+	NADH-quinone oxidoreductase subunit NuoG	NA	NA	NA	NA
WP_003251440.1\|4663847_4664855_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_003251442.1\|4664866_4665415_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_003251444.1\|4665425_4665926_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_003251446.1\|4665929_4666238_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_010954903.1\|4666234_4668088_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_010954904.1\|4668128_4669661_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_010954905.1\|4669668_4671138_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_010954906.1\|4671228_4671492_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	8.3e-13	48.7
WP_010954907.1\|4671671_4672049_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010954908.1\|4672045_4672408_-	hypothetical protein	Q9ZXL8	Pseudomonas_virus	4.6e-06	42.2
WP_010954909.1\|4672400_4672748_-\|head	head completion/stabilization protein	NA	NA	NA	NA

DBSCAN-SWA_13

5000913 : 5038444

uncultured_virus(33.33%)

integrase,transposase

attL 5009768:5009787|attR 5048157:5048176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110771809.1\|5000913_5001768_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.6e-17	40.0
WP_010955117.1\|5002215_5003646_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010955118.1\|5003648_5006948_+	hypothetical protein	NA	NA	NA	NA
WP_049586756.1\|5007018_5007618_+	hypothetical protein	NA	NA	NA	NA
WP_110771813.1\|5008561_5009065_+	hypothetical protein	NA	NA	NA	NA
WP_010955120.1\|5009061_5009640_+	hypothetical protein	NA	NA	NA	NA
5009768:5009787	attL	NA	NA	NA	NA
WP_010955122.1\|5010490_5011591_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_049586754.1\|5011692_5011917_+	hypothetical protein	NA	NA	NA	NA
WP_049586753.1\|5012006_5012408_-	hypothetical protein	NA	NA	NA	NA
WP_049586751.1\|5012419_5012638_-	hypothetical protein	NA	NA	NA	NA
WP_010955125.1\|5012950_5013091_-	hypothetical protein	NA	NA	NA	NA
WP_049586749.1\|5013179_5013470_+	hypothetical protein	NA	NA	NA	NA
WP_010955126.1\|5013564_5013888_+	hypothetical protein	NA	NA	NA	NA
WP_110771811.1\|5014189_5015351_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	9.5e-85	53.9
WP_010955129.1\|5015970_5017362_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_010955130.1\|5017383_5018856_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010955131.1\|5019115_5020111_-	N-alpha-acetyl diaminobutyric acid deacetylase DoeB	NA	NA	NA	NA
WP_010955132.1\|5020313_5020781_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010955133.1\|5020831_5021599_-	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	G9BWD6	Planktothrix_phage	4.4e-30	41.7
WP_010955134.1\|5021697_5022354_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA
WP_010955135.1\|5022353_5023010_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA
WP_010955136.1\|5023080_5023935_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA
WP_029886623.1\|5024181_5025579_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_010955138.1\|5025686_5026679_+	hydroxyectoine utilization dehydratase EutB	NA	NA	NA	NA
WP_010955139.1\|5026690_5027683_+	ectoine utilization protein EutC	NA	NA	NA	NA
WP_023048454.1\|5027732_5028923_+	ectoine hydrolase DoeA	NA	NA	NA	NA
WP_010955141.1\|5029361_5030714_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.1e-51	30.5
WP_010955142.1\|5031208_5032507_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_010955143.1\|5032481_5032835_+	RidA family protein	NA	NA	NA	NA
WP_010954361.1\|5033244_5033565_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004575513.1\|5033561_5033897_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010954362.1\|5033960_5035496_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	6.6e-118	46.1
WP_051122591.1\|5035511_5036096_+	amidohydrolase	NA	NA	NA	NA
WP_010955144.1\|5036192_5036513_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010955145.1\|5036509_5036845_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010955146.1\|5036908_5038444_+\|transposase	IS66-like element ISPpu14 family transposase	A0A218MNE7	uncultured_virus	4.3e-117	46.4
5048157:5048176	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_002947

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection