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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_006300 [Mannheimia] succiniciproducens MBEL55E, complete sequence 8 crisprs DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DinG,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10 1 18 4 0

Results visualization

1. NC_006300
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_1 952720-953611 TypeI NA
13 spacers
cas2,cas1,cas4,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_2 954864-957009 TypeI NA
32 spacers
cas2,cas1,cas4,cas7,cas8c,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_3 1345592-1345700 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_4 1542263-1542368 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_5 1629947-1630988 TypeIII NA
14 spacers
cas2,cas1,csx1,csx16,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_6 1764827-1764929 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_7 1989035-1989187 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006300_8 2138435-2138620 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_006300_6 6.1|1764864|29|NC_006300|CRISPRCasFinder 1764864-1764892 29 NC_006300.1 265451-265479 0 1.0

1. spacer 6.1|1764864|29|NC_006300|CRISPRCasFinder matches to position: 265451-265479, mismatch: 0, identity: 1.0

tgaaactgaatctgatcgcctttcaaatc	CRISPR spacer
tgaaactgaatctgatcgcctttcaaatc	Protospacer
*****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 NC_008193 Pasteurella phage F108, complete genome 1345-1378 1 0.971
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 DQ114220 Bacteriophage F108, complete genome 1345-1378 1 0.971
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 NC_003315 Haemophilus phage HP2, complete genome 830-863 2 0.941
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 AY027935 Haemophilus influenzae phage HP2, complete genome 830-863 2 0.941
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 Z71579 Bacteriophage S2 type A 5.6 kb DNA fragment 830-863 2 0.941
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 MK972713 Salmonella phage SW5, complete genome 791-824 2 0.941
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 MK972714 Salmonella phage SW3, complete genome 1013-1046 2 0.941
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 NC_049460 Salmonella phage SI7, complete genome 21270-21303 2 0.941
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 U24159 Bacteriophage HP1 strain HP1c1, complete genome 829-862 3 0.912
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 NC_049391 Escherichia virus P88_4B11 genome assembly, chromosome: 1 27227-27260 3 0.912
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 NC_001697 Haemophilus phage HP1, complete genome 829-862 3 0.912
NC_006300_8 8.1|2138459|24|NC_006300|CRISPRCasFinder 2138459-2138482 24 AP013536 Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59-MedDCM-OCT-S39-C65 7642-7665 3 0.875
NC_006300_8 8.3|2138573|24|NC_006300|CRISPRCasFinder 2138573-2138596 24 HQ728263 Erwinia phage vB_EamM-M7, complete genome 60941-60964 5 0.792
NC_006300_2 2.4|955097|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955097-955130 34 GU071103 Prochlorococcus phage P-SSM7, complete genome 83156-83189 6 0.824
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 CP025923 Escherichia phage sp. chromosome, complete genome 1167-1200 6 0.824
NC_006300_2 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955952-955985 34 NC_049344 Escherichia phage 520873, complete genome 1167-1200 6 0.824
NC_006300_2 2.8|955360|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955360-955392 33 MT773555 Myoviridae sp. isolate BML_3 genomic sequence 28827-28859 7 0.788
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 MN693686 Marine virus AFVG_250M1168, complete genome 3529-3560 7 0.781
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 MN694344 Marine virus AFVG_250M1167, complete genome 40920-40951 7 0.781
NC_006300_2 2.22|956282|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 956282-956315 34 NZ_CP053440 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence 229948-229981 7 0.794
NC_006300_3 3.1|1345631|31|NC_006300|CRISPRCasFinder 1345631-1345661 31 NZ_CP021819 Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence 880383-880413 7 0.774
NC_006300_6 6.1|1764864|29|NC_006300|CRISPRCasFinder 1764864-1764892 29 NZ_CP016840 Brochothrix thermosphacta strain TMW 2.1564 plasmid pL21564-1, complete sequence 3834-3862 7 0.759
NC_006300_7 7.1|1989060|27|NC_006300|CRISPRCasFinder 1989060-1989086 27 NZ_CP024444 Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence 88793-88819 7 0.741
NC_006300_7 7.1|1989060|27|NC_006300|CRISPRCasFinder 1989060-1989086 27 NZ_CP040258 Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence 106467-106493 7 0.741
NC_006300_1 1.7|953151|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 953151-953184 34 MN693433 Marine virus AFVG_25M397, complete genome 27789-27822 8 0.765
NC_006300_1 1.13|953545|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 953545-953578 34 NZ_MH924589 Escherichia coli strain RDB9 plasmid pRDB9, complete sequence 23680-23713 8 0.765
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 NZ_AP021878 Desulfosarcina ovata strain 28bB2T plasmid Do28_2, complete sequence 14760-14791 8 0.75
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 NZ_CP011513 Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence 16697-16728 8 0.75
NC_006300_2 2.24|956414|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT 956414-956446 33 NC_010485 Escherichia coli SMS-3-5 plasmid pSMS35_8, complete sequence 4192-4224 8 0.758
NC_006300_2 2.24|956414|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT 956414-956446 33 NZ_CP032881 Escherichia coli strain SCEC020022 plasmid p2_020022, complete sequence 4798-4830 8 0.758
NC_006300_2 2.14|955756|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955756-955788 33 NZ_CP032413 Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence 220294-220326 9 0.727
NC_006300_2 2.14|955756|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955756-955788 33 NZ_CP020864 Paenibacillus sp. Cedars plasmid unnamed1, complete sequence 230006-230038 9 0.727
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 MN694515 Marine virus AFVG_250M511, complete genome 4556-4587 9 0.719
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 21689-21720 9 0.719
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 MK798156 Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence 13098-13129 9 0.719
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 9814-9845 9 0.719
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 AP013519 Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S31-C58 16001-16032 9 0.719
NC_006300_2 2.24|956414|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT 956414-956446 33 NZ_CP010128 Escherichia coli strain C8 plasmid C, complete genome 2956-2988 9 0.727
NC_006300_5 5.10|1630630|34|NC_006300|CRISPRCasFinder,CRT,PILER-CR 1630630-1630663 34 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 10362-10395 9 0.735
NC_006300_1 1.10|953349|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 953349-953382 34 NZ_CP039222 Piscirickettsia salmonis strain NVI 5692 plasmid unnamed3, complete sequence 56646-56679 10 0.706
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 222480-222511 10 0.688
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 222520-222551 10 0.688
NC_006300_2 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 955888-955919 32 MN552143 Lactococcus phage P1046, complete genome 33543-33574 10 0.688
NC_006300_5 5.10|1630630|34|NC_006300|CRISPRCasFinder,CRT,PILER-CR 1630630-1630663 34 CP034574 Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77D, complete sequence 19628-19661 10 0.706
NC_006300_5 5.10|1630630|34|NC_006300|CRISPRCasFinder,CRT,PILER-CR 1630630-1630663 34 NZ_CP016698 Lactococcus lactis subsp. lactis strain 229 plasmid p229E, complete sequence 19604-19637 10 0.706
NC_006300_1 1.11|953415|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT 953415-953448 34 LR134122 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2 522663-522696 11 0.676
NC_006300_1 1.12|953481|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 953481-953512 32 MK931441 Escherichia phage Snoke, complete genome 19963-19994 11 0.656
NC_006300_1 1.12|953481|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT 953481-953512 32 MK931438 Escherichia phage Schulenburg, complete genome 19853-19884 11 0.656

1. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 1, identity: 0.971

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catactttcgccagtcattttatgatgaacgggg	Protospacer
***** ****************************

2. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 1, identity: 0.971

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catactttcgccagtcattttatgatgaacgggg	Protospacer
***** ****************************

3. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 2, identity: 0.941

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catacgttcgccagccattttatgatgaacggtg	Protospacer
**************.***************** *

4. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 2, identity: 0.941

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catacgttcgccagccattttatgatgaacggtg	Protospacer
**************.***************** *

5. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to Z71579 (Bacteriophage S2 type A 5.6 kb DNA fragment) position: , mismatch: 2, identity: 0.941

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catacgttcgccagccattttatgatgaacggtg	Protospacer
**************.***************** *

6. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 2, identity: 0.941

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
cataccttcgccagccattttatgatgaacgggg	Protospacer
***** ********.*******************

7. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 2, identity: 0.941

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
cataccttcgccagccattttatgatgaacgggg	Protospacer
***** ********.*******************

8. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 2, identity: 0.941

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
cataccttcgccagccattttatgatgaacgggg	Protospacer
***** ********.*******************

9. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 3, identity: 0.912

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catacattcgccagccattttatgatgaacggtg	Protospacer
*****.********.***************** *

10. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_049391 (Escherichia virus P88_4B11 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.912

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catacgttcgccagccattttgtgatgaacggag	Protospacer
**************.******.**********.*

11. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 3, identity: 0.912

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
catacattcgccagccattttatgatgaacggtg	Protospacer
*****.********.***************** *

12. spacer 8.1|2138459|24|NC_006300|CRISPRCasFinder matches to AP013536 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G6, isolate: uvMED-CGR-C59-MedDCM-OCT-S39-C65) position: , mismatch: 3, identity: 0.875

gagcacgatcacgaccatagtcac	CRISPR spacer
catcacgatcaccaccatagtcac	Protospacer
 * ********* ***********

13. spacer 8.3|2138573|24|NC_006300|CRISPRCasFinder matches to HQ728263 (Erwinia phage vB_EamM-M7, complete genome) position: , mismatch: 5, identity: 0.792

aaagaaggtcatggtcacggcaac	CRISPR spacer
aaagaaggtcatggtcacgctgtg	Protospacer
******************* ..  

14. spacer 2.4|955097|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to GU071103 (Prochlorococcus phage P-SSM7, complete genome) position: , mismatch: 6, identity: 0.824

-gacttgtaataatgattaattactgctgaagcag	CRISPR spacer
cagtttgtaa-aacgattaattactgatgaagcag	Protospacer
 ...****** **.************ ********

15. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to CP025923 (Escherichia phage sp. chromosome, complete genome) position: , mismatch: 6, identity: 0.824

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
cacacgtttgccagtcattttatgatgcggggag	Protospacer
**.*****.****************** . **.*

16. spacer 2.17|955952|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_049344 (Escherichia phage 520873, complete genome) position: , mismatch: 6, identity: 0.824

catacgttcgccagtcattttatgatgaacgggg	CRISPR spacer
cacacgtttgccagtcattttatgatgcggggag	Protospacer
**.*****.****************** . **.*

17. spacer 2.8|955360|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MT773555 (Myoviridae sp. isolate BML_3 genomic sequence) position: , mismatch: 7, identity: 0.788

ttttttattacccaaaaatcaaacccaatagga	CRISPR spacer
tcgtttactacccaaaactcaaacccagaagaa	Protospacer
*. ****.********* *********. **.*

18. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MN693686 (Marine virus AFVG_250M1168, complete genome) position: , mismatch: 7, identity: 0.781

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
tctatcctgctattgattttgataaaaatggg	Protospacer
 .**** *** ***************** . *

19. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MN694344 (Marine virus AFVG_250M1167, complete genome) position: , mismatch: 7, identity: 0.781

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
tctatcctgctattgattttgataaaaatggg	Protospacer
 .**** *** ***************** . *

20. spacer 2.22|956282|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 7, identity: 0.794

ggaaacagacgatatcaattctgcgc---acttagtt	CRISPR spacer
ggaaacagaagatatccattctgcgccagaccga---	Protospacer
********* ****** *********   **. *   

21. spacer 3.1|1345631|31|NC_006300|CRISPRCasFinder matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.774

cgatattttgcctattccgatagcactaatg	CRISPR spacer
cgggattatgtctattccgatagcactcaat	Protospacer
**. *** **.**************** *  

22. spacer 6.1|1764864|29|NC_006300|CRISPRCasFinder matches to NZ_CP016840 (Brochothrix thermosphacta strain TMW 2.1564 plasmid pL21564-1, complete sequence) position: , mismatch: 7, identity: 0.759

tgaaactgaatctgatcg--cctttcaaatc	CRISPR spacer
aaaaactgaatctgatcgactttttctaa--	Protospacer
 .****************  ..**** **  

23. spacer 7.1|1989060|27|NC_006300|CRISPRCasFinder matches to NZ_CP024444 (Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence) position: , mismatch: 7, identity: 0.741

aaataatttgacagctatttctagttt	CRISPR spacer
caataatttgacagctattttgacaaa	Protospacer
 *******************. *    

24. spacer 7.1|1989060|27|NC_006300|CRISPRCasFinder matches to NZ_CP040258 (Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence) position: , mismatch: 7, identity: 0.741

aaataatttgacagctatttctagttt	CRISPR spacer
caataatttgacagctattttgacaaa	Protospacer
 *******************. *    

25. spacer 1.7|953151|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MN693433 (Marine virus AFVG_25M397, complete genome) position: , mismatch: 8, identity: 0.765

ctcttttgcattgatgacaggcgccagaatgacg	CRISPR spacer
tacttttgcattgttgacaggcgcaagaacaaat	Protospacer
. *********** ********** ****..*  

26. spacer 1.13|953545|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 8, identity: 0.765

agattttcaacatctcagtttatttgctgatttt	CRISPR spacer
acgccttttacatctcattttatttgctgaattt	Protospacer
* ...**. ******** ************ ***

27. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021878 (Desulfosarcina ovata strain 28bB2T plasmid Do28_2, complete sequence) position: , mismatch: 8, identity: 0.75

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
gtgtttttgcaaatgattttgataataaaaag	Protospacer
.*  *. ***** ************ **** *

28. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
aacgttgtgcgatggattttgataaaaaaaag	Protospacer
* ..*..***.** **************** *

29. spacer 2.24|956414|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_010485 (Escherichia coli SMS-3-5 plasmid pSMS35_8, complete sequence) position: , mismatch: 8, identity: 0.758

tgatgtagattttttctttttc----agaatttcgtg	CRISPR spacer
ttatttagattttttctttttctgaaaaaatct----	Protospacer
* ** *****************    *.***.*    

30. spacer 2.24|956414|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032881 (Escherichia coli strain SCEC020022 plasmid p2_020022, complete sequence) position: , mismatch: 8, identity: 0.758

tgatgtagattttttctttttc----agaatttcgtg	CRISPR spacer
ttatttagattttttctttttctgaaaaaatct----	Protospacer
* ** *****************    *.***.*    

31. spacer 2.14|955756|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032413 (Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence) position: , mismatch: 9, identity: 0.727

gcgattgcgggctacaaccaaaagacttgacca	CRISPR spacer
gagtttacgagctacaaccaaaagacttatttt	Protospacer
* * **.**.******************. .. 

32. spacer 2.14|955756|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020864 (Paenibacillus sp. Cedars plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gcgattgcgggctacaaccaaaagacttgacca	CRISPR spacer
gagtttacgagctacaaccaaaagacttatttt	Protospacer
* * **.**.******************. .. 

33. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MN694515 (Marine virus AFVG_250M511, complete genome) position: , mismatch: 9, identity: 0.719

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
tgtatcctgcgattgattttgataaaggtggg	Protospacer
  **** ***.***************.. . *

34. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
tgaaagaagcaatcgatttttataaaaaaact	Protospacer
   *  * *****.****** ********** 

35. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MK798156 (Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence) position: , mismatch: 9, identity: 0.719

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
ttaaatatgcagttgaatttgataaaaaataa	Protospacer
 * * .*****.**** ************  .

36. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 9, identity: 0.719

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
tgaaagaagcaatcgatttttataaaaaaact	Protospacer
   *  * *****.****** ********** 

37. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to AP013519 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S31-C58) position: , mismatch: 9, identity: 0.719

attatcatgcaattgattttgat-------aaaaaaacg	CRISPR spacer
attatcatgcaattcaatttgattgccttcaa-------	Protospacer
************** * ******       **       

38. spacer 2.24|956414|33|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010128 (Escherichia coli strain C8 plasmid C, complete genome) position: , mismatch: 9, identity: 0.727

tgatgtagattttttctttttc----agaatttcgtg	CRISPR spacer
ttatttagattttttctttttctgaaaaaacct----	Protospacer
* ** *****************    *.**..*    

39. spacer 5.10|1630630|34|NC_006300|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.735

taaacatttggccaaatatggtgtatgtgaaaca	CRISPR spacer
catacatttggcctaacatggtgtatgataagtc	Protospacer
.* ********** **.**********  **.. 

40. spacer 1.10|953349|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039222 (Piscirickettsia salmonis strain NVI 5692 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

ttctacgcctaaaaaacaaatgattaaatttata	CRISPR spacer
gatactgcataaaaaacaaataattaaattaaaa	Protospacer
  .  .** ************.******** * *

41. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 10, identity: 0.688

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
aaactcatgcaattgatgctgataaaagtgta	Protospacer
*   ************* .********. ...

42. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 10, identity: 0.688

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
aaactcatgcaattgatgctgataaaagtgta	Protospacer
*   ************* .********. ...

43. spacer 2.16|955888|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MN552143 (Lactococcus phage P1046, complete genome) position: , mismatch: 10, identity: 0.688

attatcatgcaattgattttgataaaaaaacg	CRISPR spacer
caaggcattcaattgattttgataataagctg	Protospacer
   . *** **************** **. .*

44. spacer 5.10|1630630|34|NC_006300|CRISPRCasFinder,CRT,PILER-CR matches to CP034574 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77D, complete sequence) position: , mismatch: 10, identity: 0.706

taaacatttggccaaatatggtgtatgtgaaaca	CRISPR spacer
aggaattcctgccaaatatggtggatatgaaaca	Protospacer
 ..*  *.. ************* **.*******

45. spacer 5.10|1630630|34|NC_006300|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016698 (Lactococcus lactis subsp. lactis strain 229 plasmid p229E, complete sequence) position: , mismatch: 10, identity: 0.706

taaacatttggccaaatatggtgtatgtgaaaca	CRISPR spacer
aggaattcctgccaaatatggtggatatgaaaca	Protospacer
 ..*  *.. ************* **.*******

46. spacer 1.11|953415|34|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 11, identity: 0.676

atcaaccaaatacttgcctttatcaacaaaaagc	CRISPR spacer
ggattctaaataatcgcctttatcaacaaaagag	Protospacer
.    *.***** *.****************.. 

47. spacer 1.12|953481|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MK931441 (Escherichia phage Snoke, complete genome) position: , mismatch: 11, identity: 0.656

ttgggggggtatggagacataaccatcattga	CRISPR spacer
cgcttggggtatggaggcataaccgtcaacag	Protospacer
.    ***********.*******.*** ...

48. spacer 1.12|953481|32|NC_006300|PILER-CR,CRISPRCasFinder,CRT matches to MK931438 (Escherichia phage Schulenburg, complete genome) position: , mismatch: 11, identity: 0.656

ttgggggggtatggagacataaccatcattga	CRISPR spacer
cgcttggggtatggaggcataaccgtcaacag	Protospacer
.    ***********.*******.*** ...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29889 : 110254 93 Burkholderia_phage(27.03%) tRNA,transposase,integrase,plate,capsid,tail attL 82300:82319|attR 106846:106865
DBSCAN-SWA_2 139024 : 147160 8 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_3 1552354 : 1614948 60 uncultured_Mediterranean_phage(15.0%) tRNA,transposase,protease NA
DBSCAN-SWA_4 1845214 : 1853324 9 Clostridium_phage(14.29%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage