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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_002944 Mycobacterium avium subsp. paratuberculosis K-10, complete sequence 8 crisprs cas3,csa3,WYL,cas4,DEDDh,DinG 2 4 2 0

Results visualization

1. NC_002944
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_1 1189686-1189766 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_2 1862514-1862612 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_3 2156137-2156238 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_4 2920331-2920408 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_5 3095564-3095634 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_6 3124763-3124843 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_7 3804563-3804653 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002944_8 4641388-4641495 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_002944.2 3859756-3859784 0 1.0
NC_002944_8 8.1|4641412|18|NC_002944|CRISPRCasFinder 4641412-4641429 18 NC_002944.2 189411-189428 0 1.0
NC_002944_8 8.1|4641412|18|NC_002944|CRISPRCasFinder 4641412-4641429 18 NC_002944.2 1937907-1937924 1 0.944

1. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to position: 3859756-3859784, mismatch: 0, identity: 1.0 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcaagcgcggcgcagccg	Protospacer
*****************************

2. spacer 8.1|4641412|18|NC_002944|CRISPRCasFinder matches to position: 189411-189428, mismatch: 0, identity: 1.0 

cgccggccaagaaggcac	CRISPR spacer
cgccggccaagaaggcac	Protospacer
******************

3. spacer 8.1|4641412|18|NC_002944|CRISPRCasFinder matches to position: 1937907-1937924, mismatch: 1, identity: 0.944 

cgccggccaagaaggcac	CRISPR spacer
cgctggccaagaaggcac	Protospacer
***.**************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 492097-492125 3 0.897
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 509638-509666 3 0.897
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1780240-1780268 4 0.862
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 1847066-1847094 4 0.862
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 1027719-1027747 4 0.862
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_AP022571 Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence 23039-23067 4 0.862
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_014811 Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence 179192-179220 4 0.862
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_008703 Mycobacterium sp. KMS plasmid pMKMS01, complete sequence 44679-44707 4 0.862
NC_002944_7 7.1|3804596|25|NC_002944|CRISPRCasFinder 3804596-3804620 25 CP036360 Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence 131283-131307 4 0.84
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 110271-110300 5 0.833
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP015742 Shinella sp. HZN7 plasmid pShin-06, complete sequence 109265-109294 5 0.833
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP022747 Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence 83563-83591 5 0.828
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP022749 Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence 166742-166770 5 0.828
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 187322-187350 5 0.828
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 1138221-1138249 5 0.828
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 523304-523332 5 0.828
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 MH744420 Streptomyces phage Kromp, complete genome 13856-13884 5 0.828
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 1388616-1388645 6 0.8
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP045122 Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence 151699-151728 6 0.8
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 860496-860525 6 0.8
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 952629-952658 6 0.8
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 72517-72546 6 0.8
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP015530 Rhodococcus sp. WB1 plasmid pWB1, complete sequence 79911-79940 6 0.8
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP016462 Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence 145172-145200 6 0.793
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP012708 Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence 936-964 6 0.793
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_LR134468 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence 99913-99941 6 0.793
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP024308 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence 331027-331055 6 0.793
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP024940 Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence 633098-633127 7 0.767
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NC_007491 Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence 186714-186743 7 0.767
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP029835 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence 105298-105327 7 0.767
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 630927-630956 7 0.767
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP042333 Bosea sp. F3-2 plasmid pB32-2, complete sequence 139030-139059 7 0.767
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 125440-125469 7 0.767
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 576541-576570 7 0.767
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NC_013193 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence 107046-107075 7 0.767
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 517672-517701 7 0.767
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 MT657333 Microbacterium phage Casend, complete genome 60372-60401 7 0.767
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 92492-92520 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 2090622-2090650 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 16376-16404 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 597057-597085 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_007766 Rhizobium etli CFN 42 plasmid p42f, complete sequence 542873-542901 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP020911 Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence 708548-708576 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_021911 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence 418198-418226 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 566904-566932 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 34546-34574 7 0.759
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP014169 Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence 11428-11456 7 0.759
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP032324 Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence 279753-279782 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP032324 Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence 680929-680958 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 24127-24156 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 107044-107073 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 582842-582871 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN234205 Mycobacterium phage Veliki, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MH727544 Mycobacterium phage Dalmuri, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 JF704105 Mycobacterium phage Adephagia, complete sequence 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN234198 Mycobacterium phage Zavala, complete genome 275-304 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MF140412 Mycobacterium phage Jeckyll, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 KY380102 Mycobacterium phage CREW, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 KX585253 Mycobacterium phage HedwigODU, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN234230 Mycobacterium phage Atiba, complete genome 275-304 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MF140430 Mycobacterium phage Tachez, complete genome 275-304 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MF140428 Mycobacterium phage Slimphazie, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MK460247 Mycobacterium phage YoureAdopted, complete genome 275-304 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN234231 Mycobacterium phage Rapunzel97, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN908692 Mycobacterium Phage BGlluviae, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NC_023747 Mycobacterium phage BarrelRoll, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NC_042031 Mycobacterium phage Anaya, complete sequence 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MH536821 Mycobacterium phage Homura, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MF668267 Mycobacterium phage Apocalypse, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MH697578 Mycobacterium phage Belladonna, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MH509444 Mycobacterium phage BEEST, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN369742 Mycobacterium phage Spock, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MK112537 Mycobacterium Phage Capricorn, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN369746 Mycobacterium phage Inky, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MH051246 Mycobacterium phage ActinUp, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN234197 Mycobacterium phage Ramen, complete genome 299-328 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP015523 Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence 167289-167318 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 782258-782287 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP049735 Rhizobium leguminosarum strain A1 plasmid unnamed2, complete sequence 10604-10633 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 449800-449829 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP025510 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvD, complete sequence 16045-16074 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1614565-1614594 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP007797 Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence 184540-184569 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 CP036360 Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence 379461-379490 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 CP049735 Rhizobium leguminosarum strain A1 plasmid pRLa12, complete sequence 22247-22276 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP029356 Azospirillum sp. CFH 70021 plasmid unnamed1 303528-303557 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 988000-988029 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP032343 Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence 376671-376700 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NC_020548 Azoarcus sp. KH32C plasmid pAZKH, complete sequence 539910-539939 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 789851-789880 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP032348 Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence 546169-546198 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 1144377-1144406 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_CP012917 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence 351526-351555 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 MN096355 Mycobacterium phage Purky, complete genome 4764-4793 8 0.733
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 HQ332141 Halorubrum phage CGphi46 genomic sequence 23584-23613 8 0.733
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4993432-4993461 8 0.733
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 34530-34559 8 0.733
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 589152-589180 8 0.724
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 719122-719150 8 0.724
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP020951 Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence 339852-339880 8 0.724
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP021128 Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence 539184-539212 8 0.724
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 597600-597628 8 0.724
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NZ_CP006257 Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence 7119-7147 8 0.724
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 MH632120 Mycobacterium phage Thonko, complete genome 52304-52332 8 0.724
NC_002944_3 3.1|2156173|30|NC_002944|CRISPRCasFinder 2156173-2156202 30 NZ_LR134466 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence 68964-68993 9 0.7
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP022363 Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence 132707-132736 9 0.7
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP006989 Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence 326083-326112 9 0.7
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1583679-1583708 9 0.7
NC_002944_4 4.1|2920355|30|NC_002944|CRISPRCasFinder 2920355-2920384 30 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 369234-369263 9 0.7
NC_002944_6 6.1|3124789|29|NC_002944|CRISPRCasFinder 3124789-3124817 29 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 251834-251862 10 0.655

1. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tagaggcgatcgcaagcgcggcgcagccg	Protospacer
  * *************************

2. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tagaggcgatcgcaagcgcggcgcagccg	Protospacer
  * *************************

3. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.862 

gcgcggcgatcgcaagcgcggc-gcagccg	CRISPR spacer
gcgcggcgatcgccagcgcggcaacggcc-	Protospacer
************* ******** .*.***

4. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 4, identity: 0.862 

gcgcggcgatcgcaagcgcggc-gcagccg	CRISPR spacer
gcgcggcgatcgccagcgcggcaacggcc-	Protospacer
************* ******** .*.***

5. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.862 

gcgcgg-cgatcgcaagcgcggcgcagccg	CRISPR spacer
-ctcggccgatcgcaagcggggcgcagccc	Protospacer
 * *** ************ *********

6. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 4, identity: 0.862 

gcgcggcgatcgcaagcgcggcg--cagccg	CRISPR spacer
gcgcggccatcgcacgcgcggcggccagc--	Protospacer
******* ****** ********  ****

7. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 4, identity: 0.862 

gcgcggcgatcgcaagcgcggcg--cagccg	CRISPR spacer
gcgcggccatcgcacgcgcggcggccagc--	Protospacer
******* ****** ********  ****

8. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 4, identity: 0.862 

gcgcggcgatcgcaagcgcggcg--cagccg	CRISPR spacer
gcgcggccatcgcacgcgcggcggccagc--	Protospacer
******* ****** ********  ****

9. spacer 7.1|3804596|25|NC_002944|CRISPRCasFinder matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 4, identity: 0.84 

gaggaggaggcgggccatcccaccc	CRISPR spacer
gaagaggaggcgggccatcccatag	Protospacer
**.*******************.

10. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833 

cgcgcccgtcgagcgtcacgccgcgcccgt---	CRISPR spacer
cgcggccgtcgagcgtca---cgcgcccggcgg	Protospacer
**** *************   ********

11. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP015742 (Shinella sp. HZN7 plasmid pShin-06, complete sequence) position: , mismatch: 5, identity: 0.833 

cgcgc-ccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
-gcgcgtagccgagcgtcacgccgcgcacgt	Protospacer
 **** . *.***************** ***

12. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.828 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcccggcgatcgcaatcgcggcgccgccc	Protospacer
 * ************ ******** ***

13. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP022749 (Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.828 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcccggcgatcgcaatcgcggcgccgccc	Protospacer
 * ************ ******** ***

14. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 5, identity: 0.828 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
**** ************** **** * *

15. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 5, identity: 0.828 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
**** ************** **** * *

16. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 5, identity: 0.828 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcaatgcgatcgcaagcccggcgcaggcg	Protospacer
**.  ************ ******** **

17. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to MH744420 (Streptomyces phage Kromp, complete genome) position: , mismatch: 5, identity: 0.828 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgccaccgcggcgtcggcg	Protospacer
************* * *******. * **

18. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.8 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
ctcgcccgtcgagcgcgacgccgcgcgcag	Protospacer
* *************. ********* *.

19. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
cggcgtcgtcgagcggcacgccgcgctcgt	Protospacer
**   .********* **********.***

20. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 6, identity: 0.8 

cgcgcccgtcgagcgtcacgccgcgcccgt-	CRISPR spacer
ggcgcccgtcgcgcgtcacgcc-cggcggcg	Protospacer
 ********** ********** ** * *.

21. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 6, identity: 0.8 

cgcgcccgtcgagcgtcacgccgcgcccgt-	CRISPR spacer
ggcgcccgtcgcgcgtcacgcc-cggcggcg	Protospacer
 ********** ********** ** * *.

22. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 6, identity: 0.8 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
ccaggccgtcgagcgtcacgcggcccccct	Protospacer
*  * **************** ** *** *

23. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 6, identity: 0.8 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ccctgcgcaccgaaccgccgccgcgggagc	Protospacer
* *.**.********** ********* *

24. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 6, identity: 0.793 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tttcggcgatcgcaagcgtggcgcatcag	Protospacer
 . ***************.****** * *

25. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP012708 (Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.793 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
ggatggcgagcgcaagcgcggcacagcct	Protospacer
* ..***** ************.*****

26. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 6, identity: 0.793 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatctccagcgcggcgtcgagg	Protospacer
*********** * *********. *  *

27. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 6, identity: 0.793 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgagcgcaagggcggcgatgaag	Protospacer
********* ****** ******  *  *

28. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 7, identity: 0.767 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
aggccgcgtcgagcgtcgcgccgcgcccta	Protospacer
 *  * ***********.**********

29. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NC_007491 (Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence) position: , mismatch: 7, identity: 0.767 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
cactcccgtcgagcgtcccgccgagccgcc	Protospacer
*.* ************* ***** ***  .

30. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
aatgcgggtcgagcgtcacggcgcgccggt	Protospacer
 ..**  ************* ****** **

31. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 7, identity: 0.767 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
cgagcccgacgagcgtcacgccggtcttat	Protospacer
** ***** **************  *...*

32. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP042333 (Bosea sp. F3-2 plasmid pB32-2, complete sequence) position: , mismatch: 7, identity: 0.767 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
ggcgcccgtcgagcgtcgcgtcgcaagcgg	Protospacer
 ****************.**.***.  **

33. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
gcccgcacaccgaaccggcgacgcgaccgg	Protospacer
  ****************** ****. .*.

34. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
tgccgcacaccgagccggcgccgctgcccg	Protospacer
.************.********** * . .

35. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 7, identity: 0.767 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
agcggcacagcgaaccggcgccgctgccgg	Protospacer
 ** ***** ************** * .*.

36. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
cgccgctcaccgaaccggcggcggtgacgg	Protospacer
****** ************* **  *..*.

37. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to MT657333 (Microbacterium phage Casend, complete genome) position: , mismatch: 7, identity: 0.767 

----cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
agggcgt----caccgaaccggtgccgcgggaga	Protospacer
    **.    ***********.******** **

38. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

39. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

40. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgagcgcaggcgcggcggcgaac	Protospacer
********* ****.********  *

41. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

42. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatag	Protospacer
 ************  ********* .. *

43. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatag	Protospacer
 ************  ********* .. *

44. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatag	Protospacer
 ************  ********* .. *

45. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

46. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggtgatggcaagcgcggcggaaaga	Protospacer
******.*** ************ *.  .

47. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP014169 (Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcaagcgtcgcgctgttc	Protospacer
 *****************. **** *..

48. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gcagcacgtcgagcgtcacgccgccccaca	Protospacer
   ** ****************** **

49. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

50. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gcagcacgtcgagcgtcacgccgccccaca	Protospacer
   ** ****************** **

51. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

52. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgttgtcgtcgaccgtcacgccgcgccctg	Protospacer
.*.  .****** ***************

53. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN234205 (Mycobacterium phage Veliki, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

54. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MH727544 (Mycobacterium phage Dalmuri, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

55. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to JF704105 (Mycobacterium phage Adephagia, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

56. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN234198 (Mycobacterium phage Zavala, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

57. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MF140412 (Mycobacterium phage Jeckyll, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

58. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to KY380102 (Mycobacterium phage CREW, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

59. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to KX585253 (Mycobacterium phage HedwigODU, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

60. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN234230 (Mycobacterium phage Atiba, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

61. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MF140430 (Mycobacterium phage Tachez, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

62. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MF140428 (Mycobacterium phage Slimphazie, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

63. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MK460247 (Mycobacterium phage YoureAdopted, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

64. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN234231 (Mycobacterium phage Rapunzel97, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

65. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN908692 (Mycobacterium Phage BGlluviae, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

66. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NC_023747 (Mycobacterium phage BarrelRoll, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

67. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NC_042031 (Mycobacterium phage Anaya, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

68. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MH536821 (Mycobacterium phage Homura, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

69. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MF668267 (Mycobacterium phage Apocalypse, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

70. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MH697578 (Mycobacterium phage Belladonna, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

71. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MH509444 (Mycobacterium phage BEEST, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

72. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN369742 (Mycobacterium phage Spock, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

73. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MK112537 (Mycobacterium Phage Capricorn, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

74. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN369746 (Mycobacterium phage Inky, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

75. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MH051246 (Mycobacterium phage ActinUp, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

76. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN234197 (Mycobacterium phage Ramen, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gacgcccgccgagcgtctcgccgcgcagcg	Protospacer
 .******.******** ********

77. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP015523 (Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
ggaatacgtcgagcggcacgtcgcgcccgg	Protospacer
 * .. ********* ****.********

78. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

79. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP049735 (Rhizobium leguminosarum strain A1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gagactggtcgagcgtgacggcgcgcccgt	Protospacer
 . .*. ********* *** *********

80. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

81. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP025510 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvD, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gagactggtcgagcgtgacggcgcgcccgt	Protospacer
 . .*. ********* *** *********

82. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

83. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

84. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
cgcgcccggcgagcgtcacgcgtgtttcga	Protospacer
******** ************    ..**

85. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to CP049735 (Rhizobium leguminosarum strain A1 plasmid pRLa12, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gagactggtcgagcgtgacggcgcgcccgt	Protospacer
 . .*. ********* *** *********

86. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
ccagcccgtcgatcggcacgccgcgctgca	Protospacer
*  ********* ** **********.

87. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

88. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

89. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
cgcgagcgtcgagcgtcacgccgacaagct	Protospacer
****  *****************      *

90. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

91. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

92. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

93. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
tgcgcccgtcgagcgccatgccgccgatgc	Protospacer
.**************.**.*****   .*.

94. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to MN096355 (Mycobacterium phage Purky, complete genome) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
ggacgtcgtcgcgcgtcacgccgtgcccga	Protospacer
 *   .***** ***********.*****

95. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to HQ332141 (Halorubrum phage CGphi46 genomic sequence) position: , mismatch: 8, identity: 0.733 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gtccgacggcgagcgtcacgacgcgcccga	Protospacer
  *   ** *********** ********

96. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
gctcgctcaccgaacgggcgccgcggccgg	Protospacer
  .*** ******** ********** .*.

97. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ccgaacacaccgaaccggcgacgcggaagg	Protospacer
*   .*************** *****. *.

98. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.724 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatat	Protospacer
 ************  ********* ..

99. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgagcgtc	Protospacer
*************  ******** .  .

100. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.724 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccataa	Protospacer
 ************  ********* .. .

101. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.724 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatat	Protospacer
 ************  ********* ..

102. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.724 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatat	Protospacer
 ************  ********* ..

103. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NZ_CP006257 (Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
agtgagcgatcgcaagcacggcccagcca	Protospacer
.   .************.**** *****.

104. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to MH632120 (Mycobacterium phage Thonko, complete genome) position: , mismatch: 8, identity: 0.724 

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcccggcgatcgcgagcgcggcgtgcgac	Protospacer
** **********.*********..

105. spacer 3.1|2156173|30|NC_002944|CRISPRCasFinder matches to NZ_LR134466 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence) position: , mismatch: 9, identity: 0.7 

cgcgcccgtcgagcgtcacgccgcgcccgt	CRISPR spacer
gatgcccgtcgagcggcacaccgcgcggac	Protospacer
 ..************ ***.******  ..

106. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
cgccggacaccgaaccggcgcattgacccg	Protospacer
***** ***************  .*. . .

107. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.7 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
attattacaccgaactgccgccgcgggtgg	Protospacer
  .  .*********.* ***********.

108. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.7 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ggccgcaccccgaaccggggccgctctgct	Protospacer
 ******* ********* *****

109. spacer 4.1|2920355|30|NC_002944|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.7 

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ggccgcaccccgaaccggggccgctctgct	Protospacer
 ******* ********* *****

110. spacer 6.1|3124789|29|NC_002944|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 10, identity: 0.655 

-----gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gtcgggcgcggcgctggcgatcgccgcgc-----	Protospacer
     ******** * **.* *** ****

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 425976 : 490829 59 uncultured_Mediterranean_phage(17.65%) tRNA,holin,transposase,protease NA
DBSCAN-SWA_2 3447753 : 3454325 7 Bacillus_phage(33.33%) NA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage