CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_002978	Wolbachia endosymbiont of Drosophila melanogaster, complete sequence	9 crisprs	RT,DEDDh,PD-DExK,cas3	3	0	5	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_002978_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_1

54484-54588

Orphan

Consensus_repeat	Method
CGTCATCCCGCTACTTGTTAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_1

>merge|NC_002978|1|54484-54588|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGGCTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGG

>NC_002978|1|1|54484-54588|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGG	CTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCT
CGTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_081420799.1\|62072_62366_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_002978.6\|WP_006279879.1\|56969_57566_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_002978.6\|WP_010962340.1\|57578_60095_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NC_002978.6\|WP_010962329.1\|46173_46860_-\|reverse-transcriptase,-interruption-C	unknown	unknown	gnl\|CDD\|369847
NC_002978.6\|WP_010082072.1\|61331_61496_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_010962326.1\|43263_44382_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NC_002978.6\|WP_010082071.1\|61488_61650_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_010962341.1\|60223_60859_+\|membrane-protein	unknown	unknown	unknown
NC_002978.6\|WP_099606206.1\|61653_62088_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_002978.6\|WP_167513688.1\|48063_48840_-\|reverse-transcriptase-N-terminal-domain-containing-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_002978.6\|WP_006279880.1\|56597_56924_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133393
NC_002978.6\|WP_006279881.1\|56292_56598_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857
NC_002978.6\|WP_099606204.1\|46856_47689_-\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_002978.6\|WP_010962324.1\|40151_41414_-\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235351
NC_002978.6\|WP_010962337.1\|52848_54351_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_002978.6\|WP_099606205.1\|47716_48118_-\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238828
NC_002978.6\|WP_010962336.1\|52110_52752_+\|dioxygenase	unknown	unknown	gnl\|CDD\|239542
NC_002978.6\|WP_010962338.1\|55044_56232_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NC_002978.6\|WP_010962328.1\|45766_46177_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NC_002978.6\|WP_010962325.1\|41419_43054_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_081420799.1\|62072_62366_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.40979e-05
NC_002978.6\|WP_006279879.1\|56969_57566_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.69003e-30
NC_002978.6\|WP_010962340.1\|57578_60095_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NC_002978.6\|WP_010962329.1\|46173_46860_-\|reverse-transcriptase,-interruption-C	gnl\|CDD\|369847	pfam08388, GIIM, Group II intron, maturase-specific domain. This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing.	3.6896e-17
NC_002978.6\|WP_010082072.1\|61331_61496_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NC_002978.6\|WP_010962326.1\|43263_44382_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NC_002978.6\|WP_010082071.1\|61488_61650_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.08186e-07
NC_002978.6\|WP_099606206.1\|61653_62088_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	3.69317e-14
NC_002978.6\|WP_167513688.1\|48063_48840_-\|reverse-transcriptase-N-terminal-domain-containing-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	9.09285e-46
NC_002978.6\|WP_006279880.1\|56597_56924_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133393	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.51321e-35
NC_002978.6\|WP_006279881.1\|56292_56598_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	1.31102e-34
NC_002978.6\|WP_099606204.1\|46856_47689_-\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.41242e-30
NC_002978.6\|WP_010962324.1\|40151_41414_-\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235351	PRK05137, tolB, Tol-Pal system protein TolB.	0
NC_002978.6\|WP_010962337.1\|52848_54351_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_002978.6\|WP_099606205.1\|47716_48118_-\|hypothetical-protein	gnl\|CDD\|238828	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).	2.10537e-21
NC_002978.6\|WP_010962336.1\|52110_52752_+\|dioxygenase	gnl\|CDD\|239542	cd03459, 3,4-PCD, Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	6.62773e-51
NC_002978.6\|WP_010962338.1\|55044_56232_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	5.93679e-16
NC_002978.6\|WP_010962328.1\|45766_46177_-\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	4.26249e-10
NC_002978.6\|WP_010962325.1\|41419_43054_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	3.90503e-172

>NC_002978.6|WP_010962337.1|52848_54351_+|leucyl-aminopeptidase
MYSLQLFATEIPAMKITISKISPDFKTIVMGLFEDNETVNDGGVLQGKQVIDNIKQFSDFNGSFGEFFSTALPEEKNVIVVGLGKKDEWNENKELNIGGKIYCELSRLKIKKAAVLIEGSAANVAYGAFLRSFKFDKYKTKKDEKITEVEEITVLVKDEQLSNAERSFEHLRQEGESIFLARSFITEPPNILYPESYADHIKKELTKLGLEIEVLDKKQMEEKKMGALLGVAQGSSKEPKLVVIKWNGASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSATVVGVMHALAGRKAKVNAIGVVALAENAVGGNAQRPSDVVTSMSGQTIEVLNTDAEGRLILADALWYTQDRFSPKFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLIDAGNEVNEKLWRFPMNETYDKIIDSPIADVQNIAPAGSGGDSIMAAQFLQRFVNETCWAHLDIAGTAWHEKGTDICPRGAVGFGVRLLNKLVEKYYEAND
>NC_002978.6|WP_010962336.1|52110_52752_+|dioxygenase
MNVKNILLALLVQMIFSLPLFAADPVLLNCIKTPEIYDLDARPKNFSSSNNLRRKPGSPNSAIGELIHIVGRITDINCLPIQNAVVSIWHANSRGVNHYDKNIEDDLNFAGSGRFVVNNLGYYNFITIAPGKIGDRAPHINFLVQHPDFPEFTTQMFFADHNCDNCADPVLEDFVSNGLASLLITPFTYSDQVIKTYTFNITLGGYNKFSNKR
>NC_002978.6|WP_167513688.1|48063_48840_-|reverse-transcriptase-N-terminal-domain-containing-protein
MPKVISGICRRKHFNLEGKVVNSSEYVMDQQKARYEWNGIPWRKLKKSSFKLQKRIYQASKCNDIKKMHNLQRLLLKSTSARTIAVRRVTQDNRGKKTAGIDGKANLSQKERLQLANSLDIREKAKPSRRVWIPKPGKPSEYRPLGIPTISCRAKQTLVKMVLEPEWEAKLEPNTYGFRPGRSCHDAIEAIFNVLKQKTAYVLDADISGCFDNINHNKLLENHTSVKENHKRMVRSGCYGRWKASIHKTWYNSRKHRC
>NC_002978.6|WP_099606205.1|47716_48118_-|hypothetical-protein
MESFNPQNVVQFKEAPLLACVALHGLEQHVKKALTNELFQCMKRKYGRISHKNAQKSISVIFYCDDFVIIHENEEIILKAKILVEEWLETIGLKLKPSKTRISHTLRTIDETKPGFDFLGFSIRGCPETSKRL
>NC_002978.6|WP_099606204.1|46856_47689_-|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWSRIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA
>NC_002978.6|WP_010962329.1|46173_46860_-|reverse-transcriptase,-interruption-C
MNLLVSGQPLRQYPTKESKKGYTLLIKPSRNSIKQHTFAIKHKLREMRGAPQEVIIRNLNPINRGWSQYYSSVVSCKIFSSLDNTIHRKLWKWAVFRHPNKGKCWIKRKYFKKYNNDNWRFMTSNKIHLIIHSDHVIKRHIKVQKTRSPYDGDWVYWGNRLREIPDKPSRVIKLLKLQQSKCGNCRLWFESDDIIEIHHKDRNRRSNMIKNLSLLHGHCHDELHRRCA
>NC_002978.6|WP_010962328.1|45766_46177_-|hypothetical-protein
MTSTKLERSRMRRKVSRTVLKSSEEGRPSSLRQQYADETTDEDLRNIAEKSPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYKLEEGIGKGKIEVAKNLLKAGVSVNLIAESTGLSQAEIVQLKQEVA
>NC_002978.6|WP_010962326.1|43263_44382_-|molecular-chaperone-DnaJ
MSKKDYYDLLEVGRNASIDEIKKAYKKLALRYHPDRNPGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIFNDFFGGGFGGGASRSRAKRSTTGVSGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDTCQGTGGEGAIKPVQCHTCQGSGRIRTQQGFFTIERTCTTCYGEGEIIQNKCKKCGGSGRRRDEVNISVSIPKGIEEGAKVRISGKGEAGTKGGKSGDLYVYVKIIFHKIFARNKADLHCKVPIRMTLAVLGGEIDIQSIDGAKIKVKVPEGTQTGTKLRCREKGMPYMNSHARGDLYVQVIVETLNPKNLTKKQIELLKALEEEENASVQQQSEGFFSKVKKK
>NC_002978.6|WP_010962325.1|41419_43054_-|ribonuclease-J
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGVGFADETMPGVELLIADIDFIAQRKKDLLGIIITHAHEDHCGAVPHLWEELQCSIYTTKFTVNFLKEKLKEFRLEGIVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEMGSALHTGDWKFDPKPVVGLTSNMERLKEIGDKGDLLAAICDSTNILSKHHPESEGEIYNNIYNIIKRSKKLVAVSLFASNVARIETISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPQFLEAKEAVNFPREELVLLCTGCQGEPLAATARLAAKNHQAFKMQQGDTMIFSSKIIPGNETRAHNMLNAFIEMGVEVITEKTEHVHASGHPTREELKEMYSLIKPKMSIPVHGEYIHTHAHVKFAKECGVAKAIMIAPGDIVNLENGGKVDSIDVDYFGIDGMLLRHPESSVIKMRKRMRDAGVIVVTAVVNKKNKLLAKPKVFVPGVFEVLEDAATIQKIVKKVESLFSLQPTKKIKNKIESSILSILKEYLLKRPIIEVQIEQV
>NC_002978.6|WP_010962324.1|40151_41414_-|Tol-Pal-system-protein-TolB
MKLFVHLVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSNCGLFNVKRSAEAESKSWKSDTVVTVSLSEISGSALELSFRLFDAFTKRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIAVMNQDGSNIKYLTNGDRFVSTPRFSPNGKGIVYISYANGKSYIILKNLKDNTESIISAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQKYMAFSSDISGSQQLYVIDFTNKSKKPKRISFGSGRYATPVWSPKGDLIAFTKIQSGKFYIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTESPSNSKLYLVDLVKKNQKMVSTPTNASLPDWSYF
>NC_002978.6|WP_010962338.1|55044_56232_+|MFS-transporter
MESRAKAWFIWLISNLVVIFSNMQIIYTFISVNLEKELGLTIAQVALANSAYTWTFAILQFFSGATFNVFSSKKIYFFSLSTMILGFFVLINSDNFSHLILSQVLIATGASFGFIGAAHTSSICFSAAQFGLMFSLVQTISSLSALVIQILFSNLLAEDAYWKNLIVCIILFGVLIFVLTLFCPNTLPKSSSEKRTIKSSMKTVMCSILTVLKLRDIWITSVVGAITFGTFLALNTLWAPRLLGNSELNAMESGIATAILWLGLAVGAPIADRISNLFKNRKHVISAFALLQGVSIIILLYSHLTVHVVYFCMLMFGFFAGGHMLNFTVGSEIVKRKYISTSSSIINGFMFIGSGVIVSMLALFTDHKMELFAIFAILIVAGILNYATKETYSKK
>NC_002978.6|WP_006279881.1|56292_56598_+|integration-host-factor-subunit-alpha
MDHVTTKDTTVTKATIAGDINQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVMIQARNSVSFRPSKIIKKSINN
>NC_002978.6|WP_006279880.1|56597_56924_+|MerR-family-transcriptional-regulator
MNKEKLFYTIGEVAEELHLEQHVLRFWEGQFHQIKPTKRKGRRLYDRKCIEAIKKVKYMLYDKGYTIKGVQKEFGNDIKVTKNLLQELTDLRDYLTSKINNEESNKQA
>NC_002978.6|WP_006279879.1|56969_57566_+|M23-family-metallopeptidase
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYKDNNNTQNVGVNCKFVMPVKGSATSSDEMCKDGIKIAAQNGTNVVSSAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQGQVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLMHMNCN
>NC_002978.6|WP_010962340.1|57578_60095_+|leucine--tRNA-ligase
MKYDFKSVEKFYQDKWDFSVSKSGKQEKCYVLEMFPYPSGKIHMGHLRNYAIGDVIARYKRANGFEVLHPIGWDAFGLPAENAARDNNISPETWTKENIDNMRTQLKSIGLSYNWERELSTCEPDYYKHEQKFFLDFLKHGLAYRKESWVNWDPVDQTVLANEQVVDGKGWRSGAVVEKRKLSQWFLKITDFAEDLLKCLQSLKNWPEKVKTMQERWIGKSEGATIEFEVVGLNKKLKVFTTYPHTLFGASFCAVAAEHPIVQDLKNGSSVVIPVLDTGIQEIKSKRENDEKIGVYTGLNVKHPFLDKELPLYIANFVLMEYGEGAIFGCPAHDQRDFEFAQKYNLPIIPVISSAHLGVIPARDQNSYNGSQCQATQMTKEAYTGDGTMFNSEFLNGLMVSEAKEAIVKKFEEKKIGKKTINYRLHDWGVSRQRYWGCPIPIIYCKDCGTVPVPEKDLPVVLPIDVEFTSGGNPLDKHPTWKFVDCPKCGKQAERETDTFDTFFESSWYFAAFCSEDKSIDKDACNRFMPVDYYIGGIEHAILHLLYSRFFCRALTKCGYFDIKEPFSTLITQGMVCHATYKDENGKWLFPAEAKELIARGAKVQVGKVEKMSKSKKNTVDPNFIIEKYGADTARLFVLSDTPPEKDMEWSDDGVEGCSRYVNKLWRMVMQLRPVNIHYDNENVTGGLLEYRKKIHKLLHGLTDDLENCRLNCVVAKFREMTNLIAEIDVKTGKSLIDEGICILIRVIEPFIPHLAESLWQEIGGQPWPKADESLLVDDTVTIAVQINGKLRTTIKVAINLPQEELKKIAIDSVSSKIDQSKVRTVYAVPNKIVNIVI
>NC_002978.6|WP_010962341.1|60223_60859_+|membrane-protein
MKIKRLCVLAVLLTSSLAGAASNSASKSEDKYYAGLNFGAGWGGGFKMKPGVVLGYHYDQNSKFELEVLSNIKSLKSIGASLLANYRFYPDLDIDPVKLYVSGGLGGYLQITPFGFGVSDTVDGDGNSSQEEKEKEEETQGAPESGGEAAGSSVVDKILSSISYKLKLGVDYEITPQIIGAVGMTMGGQLSGIKAKQIPDATLEIGVRYNF
>NC_002978.6|WP_010082072.1|61331_61496_-|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NC_002978.6|WP_010082071.1|61488_61650_-|hypothetical-protein
MSSAINKQLVMNSLLMAINRRKPVKNLLLHSDQGSQYTAQGYQYLLAVKNIDE
>NC_002978.6|WP_099606206.1|61653_62088_-|IS3-family-transposase
MFFYIVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLAAIQKIYQVSKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW
>NC_002978.6|WP_081420799.1|62072_62366_-|transposase
MAREYTAEFKLEAVKLANEQRKVGQTITKTAKDLGIKGGLLGKWIKKHNEKKSAANAFPDVAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFI

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Crispr_ID: NC_002978_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_2

178437-178595

Orphan

Consensus_repeat	Method
CCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCAGCCGCTAACAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_2

>merge|NC_002978|2|178437-178595|CRISPRCasFinder
CCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCAGCCGCTAACAAGAGATCCCGCTAACAAGCAGCGGGATGACGAGGTATAAACTTTATCGTCATGCCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCGGCCGCTAACAAG

>NC_002978|2|2|178437-178595|CRISPRCasFinder
CCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCAGCCGCTAACAAG	AGATCCCGCTAACAAGCAGCGGGATGACGAGGTATAAACTTTATCGTCATG
CCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCGGCCGCTAACAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_010082284.1\|175891_176599_+\|membrane-protein	unknown	unknown	gnl\|CDD\|223930
NC_002978.6\|WP_041580618.1\|171549_174045_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_002978.6\|WP_010962422.1\|169486_170665_-\|ribonuclease-D	unknown	unknown	gnl\|CDD\|223426
NC_002978.6\|WP_080717647.1\|190142_190313_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_006280338.1\|168603_169191_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|238980
NC_002978.6\|WP_022626217.1\|166848_168252_-\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NC_002978.6\|WP_010962429.1\|181015_182092_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227310
NC_002978.6\|WP_010082072.1\|166592_166757_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_010962430.1\|185451_185715_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_006279902.1\|189015_189360_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|213395
NC_002978.6\|WP_038228098.1\|186385_187474_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|273992
NC_002978.6\|WP_146038202.1\|168371_168449_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962427.1\|176631_178194_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_002978.6\|WP_010962434.1\|189747_189966_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_002978.6\|WP_006280151.1\|179172_180957_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236378
NC_002978.6\|WP_010962432.1\|187575_189003_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NC_002978.6\|WP_010962425.1\|174319_175126_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_002978.6\|WP_006279896.1\|185800_185938_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_006279898.1\|186143_186278_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NC_002978.6\|WP_006279522.1\|175311_175494_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_010082284.1\|175891_176599_+\|membrane-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.12872e-41
NC_002978.6\|WP_041580618.1\|171549_174045_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_002978.6\|WP_010962422.1\|169486_170665_-\|ribonuclease-D	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	4.4574e-84
NC_002978.6\|WP_080717647.1\|190142_190313_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.45933e-15
NC_002978.6\|WP_006280338.1\|168603_169191_-\|dephospho-CoA-kinase	gnl\|CDD\|238980	cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.	1.23418e-53
NC_002978.6\|WP_022626217.1\|166848_168252_-\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	1.91698e-18
NC_002978.6\|WP_010962429.1\|181015_182092_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|227310	COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only].	1.4431e-23
NC_002978.6\|WP_010082072.1\|166592_166757_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NC_002978.6\|WP_006279902.1\|189015_189360_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|213395	cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.	1.66958e-19
NC_002978.6\|WP_038228098.1\|186385_187474_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.80312e-64
NC_002978.6\|WP_010962427.1\|176631_178194_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_002978.6\|WP_010962434.1\|189747_189966_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.000245414
NC_002978.6\|WP_006280151.1\|179172_180957_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236378	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha.	0
NC_002978.6\|WP_010962425.1\|174319_175126_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.00672859
NC_002978.6\|WP_006279898.1\|186143_186278_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	2.14938e-10
NC_002978.6\|WP_010962432.1\|187575_189003_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0

>NC_002978.6|WP_010962427.1|176631_178194_-|glutamine-hydrolyzing-GMP-synthase
MSAIAIIDFGSQFTQLIARQVRGMGVYCEIFPSNISFETISKFNGFILSGGPQSVNDDCSETSRVVHEIIKLNEATSVPILGICYGQQLICHYFGAKVKESFKQEFGRTKIKILKESPIVKDTWDVNSEVDVLMNHADSVDTIPQGFTVIASGVINQTIAMIVNEQRKIYCTQFHPEVKPTTNGSKLLSNFLDIANCKRDWTMKSFIEEQKEKIKNVVGEKKVIAAVSGGVDSSVAAALTHKAIGKQLNCIFIDTGLLRKNQTIAMLKEIPINYVDKSNLFLSRLKGITDPEEKRKIIGNTFIEVFEEEAKKIGDVDFLMQGTIYSDVVESGHASDNTSTIKSHHNVGGLPEKMNLKLVEPLRYLFKDEVRLLGKEIGLSDEIIFQHPFPGPGLAVRIISEVDKEKVQILQEVDEIYINTMKNYDLYDKIWQAFAVLLPIKTVGVMGDGRTYGYVCALRAVTSSDGMTADAFPFEDKDQHLLVFWDFLRNVGSIIVNNVPGVNRVVYDITSKPPATIEWE
>NC_002978.6|WP_010082284.1|175891_176599_+|membrane-protein
MLTDAWTLLTLTLLETILSVDNLIFISLAIDKVPNALRERVRLMGLGLALLMRFVILFFTSSILSMQKPIFHTASARDLLMIAGGLFLIVKSSMELRDDIFVCKKNKKKANVKSKFFLVVLQIILIDLVFSVDSILTAIALTYNMVIIATAFTFSMLAMLFLSSYTAQLIKSNPGLKIIAILFVLLVGVYLILHGFHIELPKGYLYSSFMFALLVEIISKIKKINRHTAIHSRYL
>NC_002978.6|WP_006279522.1|175311_175494_-|hypothetical-protein
MVENLGVVFTTAQRAIVKLEDLGIVSQTSQGKRDRVYCATDILNILEEPTKITENFDSTL
>NC_002978.6|WP_010962425.1|174319_175126_-|ankyrin-repeat-domain-containing-protein
MINNLDSIILGIKDGEKAIEDLRVVLKKRKEEVITTQTFNYALQCPQTTKEAIVHEILLHFIQNPGEQSLEQVIQYLDGAIQSRIYAKNNPIRNLDEEFRTHINFKDEEGNTLLHHAVIGNKTEEITTLLVTYSANPLIQNADNKVPSDLAQGKTKEVLIKSMKKQANTKKESAMVGSLVPGVIIGGFLGVVLGAGVCVAVSLSGGMILGVMIASSLVASIAIGLAMYFLSQDYEQAKAIEKTISTVSSEISVDDTTVANGKKGPQLT
>NC_002978.6|WP_041580618.1|171549_174045_-|DNA-mismatch-repair-protein-MutS
MSFVKEKNTPVMEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQEIPMCGVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSLLEDKSNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFTEDEKIRSILKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALLEYVRVTQRGSIPRLEFPKTYKQQNFMLIDTSARRNLELFSTQFGEKKGSLISVIDHTVTASGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHDSRRKIREILSNIPDIERSLSRLILGRGSPKDMNLLKIGLGKTLELSEFLCKIESGENGSLPQQYVIQTEIQPASRAGITVKSDESELSTIHKSLGNHKDLFELLNSAILDNNLSSVKEGGFIHSKYNSELSELSYILNNSNKLVTKLRESYRDLTGIAALKILHNNILGYYVEVSANHKITSDIFIHRQSLANSMRYTTNELKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIRTAFAELAVQNNYVKPIIDDSKEFNICSGRHPVVEVNDKFIANSINLAGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPAESAHIGVIDKIFSRVGATDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVLNRASEVFEELKA
>NC_002978.6|WP_010962422.1|169486_170665_-|ribonuclease-D
MLISTTSELENTCEELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDALVPEIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESIVDINKYLHSPKDAWKRIKFNYEVNPRLILTVKAVSEWQETLAQRYNMNRNKIINNAVIADFIEKNVEHVDEILDDLKRNTKNIKDADLLEFVNIFNENERNWMQQNNTLSSNYDKSVLDILSIILDSKCKESNISRKLVSSKDELTGSISGQTDKLFKGWRYDFFGRSVESFLNTSSKFEISAVKSANNITKIQSNLVENNCC
>NC_002978.6|WP_006280338.1|168603_169191_-|dephospho-CoA-kinase
MIISLTGGIGVGKSFVANCFQEFGAVVFDADSVVHQLYKVDKSIISYAEKNFPGVVVNGEIDRTVLSKYFLAYDENWKQFQSLVHSAVLRELEFFIAKEKKIDRKLLVLDVPLLLETKFYLYCDLIVFVHADSVVQAQRLNERNIDKEKLNLISDVQLSIEEKRKMSDFIIDTSVSKEYVFSQVKDIVDSLNLNT
>NC_002978.6|WP_146038202.1|168371_168449_-|hypothetical-protein
MCTIATFLIKNWIPVSSTGMTPFRW
>NC_002978.6|WP_022626217.1|166848_168252_-|nitronate-monooxygenase
MKNKIKKIVISGKEVWPIIEGGKGIAVSDRRSSGAFAAADAVGTFSGANAKLIDDNGELVPLIYKGKTRNEKHSELIEYSIEAGISQARIANEISKGHGRIHMNVLWEMGAAERVLHGILEGAKGLIHGITCGAGMPYRLGEIAAKYQVYYYPIISSVRAFKALWKRAYQRISSYLLGGVVYEDPWLAGGHNGLSNSEDPELPQAPFERVAELRSFMNEIGLSETPIVMAGGVWHLKDWEHWFDNLQIGPIAFQFGTRPLLTKESPISAEWKKKLLTLEEGDVFLNKFSPTGFYSSAVRNNFIRELQERKLHQVNFSENASEESNSEFAMGSRGRKIYLTAKDKELANTWTKAGYTEAMKTPDSTVIFVTPDKFKQIREDQINCMGCLSHCLFSNWKDHGDHSTGRKPDPRSFCIQKTLQNVIHDGDIENELMFSGHNVYKFKQDPFYENGYVPAVKELVERILTGY
>NC_002978.6|WP_010082072.1|166592_166757_+|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NC_002978.6|WP_006280151.1|179172_180957_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNNITINYAKDSKLTDFGKAVLSDRYLIENESYQDLFARIANYYSDNKEHAQRLYDYMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIGESVKGSGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLDLRKPTGGDPNRKALNIHHAVIVTDKFMQAVENDQEWNLISPHNNKVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIKMSNLCSEITLTTGYDHLNKSRTAVCCLSSVNLEYYEEWKDNKLFIEDIMRFLDNVLEDFINKAPNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSKKLAEEKGACSDAKEVDLMERFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASDRTSYICQSQSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTDIDYDECLSCQ
>NC_002978.6|WP_010962429.1|181015_182092_-|methyltransferase-domain-containing-protein
MKSNLSFIKNVALNCMSKLIGVLNIKKVKHFIVNKYNTLHKEMTVLLKKSKNLLNTNIEIGLYHFYKGSISDAKLRFWLISIFYPHLPIVWYNIGRCHFAVGNTNKAYNYLTRALKLDNDHEEASYYIKKMTNSAPITELPKNLIRQYFDYTGEYFVEHWLIAKQYRGHELVHMIITKIFNNSTSELNILDLGCGTGICGHFLKINSIGKHITGIDISSRMLNIARGCFIKGKPVYNELIHMEMKEFLKQEKNQQYDVIIFAEVLHYLHDFQEELELAKRSTSKKGVIVCLIRRKEGEGIDFVNKGDYFRHSESYVQHVAKEINMQISYMSYCKIYGSQVDGILFALQHQQKNPKNLT
>NC_002978.6|WP_010962430.1|185451_185715_-|hypothetical-protein
MVEHIKEVNNTGFGQMYQFLFLPKGTGTDWRSAFRQQEELFKKVGSNVILPEVSNSPSKGNQLGKVGTMLNNVENDQEHIRKKRYRS
>NC_002978.6|WP_006279896.1|185800_185938_-|hypothetical-protein
MLAKISILNISNIGHYYIILTHRNIMQASYKNLQKDLTICLKKIK
>NC_002978.6|WP_006279898.1|186143_186278_-|50S-ribosomal-protein-L34
MKRTFQPKNLIRKRRHGFRSRMATRAGRKILNRRRSLGCNKLCA
>NC_002978.6|WP_038228098.1|186385_187474_+|phosphate-ABC-transporter-permease-subunit-PstC
MNSVIVIPVLLILLFCFSRFQEVNKVKSYLYLSCVWMLTWLLVFYNNCFVTFISIALLFFMLAFIFKNKRNKIIKLSLFVALAISFFITLFIMLSIFIQSISFFNKVAISEFLFCLKWGHNVVTINEEKIGCFGIAPLLVGTLLITIIAMLVVVPLGLFSAIYISEYASEKVCYIVNTTLQVLSAIPTVVYGYFAVVFLSFFIKQVANFFGLSIHSESALVAGLSIGIMILPFIISLLEDAIRSVPKSLRYGFMALGATPAETIWHITIPYAMPTILSAILLSISRVIGETMIVLMAVGINANLTFNPLNSVTTITVQIATLLTGDQDFNSVQTLAAYALSLVLFIITWLLNAFALFVMKRN
>NC_002978.6|WP_010962432.1|187575_189003_+|F0F1-ATP-synthase-subunit-beta
MNIGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVPIGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFTEQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKAHKGFSVFAGVGERTREGNDLYHEMITSNVININEHEKSQAVLVYGQMNEPPGARARVALTALTMAEYFRDRENQDVLFFVDNIFRFTQAGSEISALLGRIPSAVGYQPTLATDMGAMQERIASTTSGSITSVQAIYVPADDLTDPAPATTFSHLDATTVLSRQIAEMGIYPAVDPLDSTSQSLSAEIIGEEHYNVASEVKRILQTYKSLQDIIAILGMDELSDEDKIIVDRARKIQKFLSQPFHVAEIFTGMPGKFVSLSDTVSSFKGIVEGKYDHLPEAAFYMVGNIDEAIKKAELIQAEAK
>NC_002978.6|WP_006279902.1|189015_189360_+|F0F1-ATP-synthase-subunit-epsilon
MNTFKVQFFSPDDQISFSGVVSLSVTGLEGELMILAHHAPYLIYLLPGMITVKMSNQTEKKVVIDSGVLEVANNNCSIITSQIQVFDRAIHDEKSFKNKRISIYLSYLDEKFLS
>NC_002978.6|WP_010962434.1|189747_189966_+|ankyrin-repeat-domain-containing-protein
MISNIIRSIVKYLMRKVIKYISIIGIACLVLLFFISNVETRVKTQEEQLFLAVEDGNAQEVKLLLKNGADPN
>NC_002978.6|WP_080717647.1|190142_190313_-|DDE-type-integrase/transposase/recombinase
MAVDKRKPDKNLLLHSDQGSQYTSQNYQFLLNTKNIISSMSHKGCCYDNSVAEKFT

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Crispr_ID: NC_002978_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_3

341228-341332

Orphan

Consensus_repeat	Method
AGTAATTCGTCATCCCGCTACTTGTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_3

>merge|NC_002978|3|341228-341332|CRISPRCasFinder
AGTAATTCGTCATCCCGCTACTTGTTAGTGGCTGAGATACCGCGGCGGTATGACGGTTTGCGGTGGTATGACAGTTAAGTAATTCGTCATCCCGCTACTTGTTAG

>NC_002978|3|3|341228-341332|CRISPRCasFinder
AGTAATTCGTCATCCCGCTACTTGTTAG	TGGCTGAGATACCGCGGCGGTATGACGGTTTGCGGTGGTATGACAGTTA
AGTAATTCGTCATCCCGCTACTTGTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_010962534.1\|339921_340596_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NC_002978.6\|WP_010082521.1\|333278_333719_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_002978.6\|WP_010082539.1\|346942_347122_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962540.1\|349681_349894_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962542.1\|349960_350746_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_002978.6\|WP_010962533.1\|338514_339111_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_002978.6\|WP_010082530.1\|340873_341164_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NC_002978.6\|WP_010082535.1\|344773_345640_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|184766
NC_002978.6\|WP_010082541.1\|348289_349336_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_002978.6\|WP_010962529.1\|332091_333267_+\|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NC_002978.6\|WP_010962537.1\|347127_348120_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235834
NC_002978.6\|WP_010082536.1\|345643_346009_+\|Mth938-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238152
NC_002978.6\|WP_010962543.1\|350742_351501_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|172732
NC_002978.6\|WP_010082533.1\|329442_331191_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_002978.6\|WP_080717604.1\|331800_331857_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_002978.6\|WP_022626255.1\|341470_344692_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274298
NC_002978.6\|WP_167513689.1\|335569_336724_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214661
NC_002978.6\|WP_010962530.1\|333858_335496_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NC_002978.6\|WP_010962532.1\|336841_338293_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NC_002978.6\|WP_010962536.1\|346010_346811_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181938

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_010962534.1\|339921_340596_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.08205e-67
NC_002978.6\|WP_010082521.1\|333278_333719_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.24181e-14
NC_002978.6\|WP_010962542.1\|349960_350746_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	9.75991e-107
NC_002978.6\|WP_010962533.1\|338514_339111_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	6.09317e-15
NC_002978.6\|WP_010082530.1\|340873_341164_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	2.77291e-51
NC_002978.6\|WP_010082535.1\|344773_345640_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|184766	PRK14610, PRK14610, 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase.	4.28589e-177
NC_002978.6\|WP_010082541.1\|348289_349336_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.49287e-23
NC_002978.6\|WP_010962529.1\|332091_333267_+\|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	6.10199e-134
NC_002978.6\|WP_010962537.1\|347127_348120_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235834	PRK06585, holA, DNA polymerase III subunit delta; Reviewed.	2.23812e-42
NC_002978.6\|WP_010082536.1\|345643_346009_+\|Mth938-like-domain-containing-protein	gnl\|CDD\|238152	cd00248, Mth938-like, Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.	3.81859e-37
NC_002978.6\|WP_010962543.1\|350742_351501_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|172732	PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional.	0
NC_002978.6\|WP_010082533.1\|329442_331191_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	5.21557e-161
NC_002978.6\|WP_080717604.1\|331800_331857_-\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.0020206
NC_002978.6\|WP_022626255.1\|341470_344692_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|274298	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_002978.6\|WP_167513689.1\|335569_336724_-\|hypothetical-protein	gnl\|CDD\|214661	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras.	0.000108832
NC_002978.6\|WP_010962530.1\|333858_335496_+\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NC_002978.6\|WP_010962532.1\|336841_338293_-\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NC_002978.6\|WP_010962536.1\|346010_346811_+\|metal-ABC-transporter-permease	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	3.1773e-41

>NC_002978.6|WP_010082530.1|340873_341164_+|GIY-YIG-nuclease-family-protein
MKLSYIYILTNKANSTLYIGVTANLIKRIWEHKNKIVSGFTSRYNVNKLVYFEEFEDISLAIARERRLKEWPRQWKINLINQKNPSWIDLYYLALR
>NC_002978.6|WP_010962534.1|339921_340596_+|DNA-repair-protein-RadC
MKNYKKGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPVAKSLIESFGSLNKVFNADLEALQNVDDVSNAAISAIFCVKQAFVRSAREEIKNLPVIDNWEKLLDYLRISIGSLNKENFRVIYMNKKYRLIAEDLQNIGTVDQTPLYVREIIKRALLIGSTSIVISHNHPSGDTQPSNSDISLTRQLAEACQSIGIELIDHIIITFSSYFSFKENRLL
>NC_002978.6|WP_010962533.1|338514_339111_+|RDD-family-protein
MLHKFFNRLFSIFSSINVIQKVKKDENGICYVTGLRRYISVLLDLIIIVLFLQFCGQAFNQLFTNSEDSKIFSQVAAKSPMQVPLSIEEKAMQSRLVKLMILNQIVQFIMLFCYVIYMWVKFATTPGKLLFGLRVVDAQTFEKMTLKQATKRFFSFILSVAPLFLGFLWSNFNKRCQTWHDKIAGTVVVTSKSLRRQS
>NC_002978.6|WP_010962532.1|336841_338293_-|replicative-DNA-helicase
MNELANLLSSRSVDKEICKLPHNLEAEQMLIGAMIRDNRICDAVEDTITAENFYDPLHQSIFTQISKTRKHGIVANELSLKMFFENDQAFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIKLGQEIVGDSYNYDIENPAQAQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISTLKNNPEALGVTTGLQDLNQLLGGLQKSDLLILAARPSMGKTALALNIALNACKMLQKRADKQHYVAFFSLEMSAEQLTARLITIDSGISYYKALTGRISDFELHEFINTSTELSELPFIIDDTPALSISALRTRIRLLYQLYNVEVVFIDYLQLIRGTTKRSNENRVQEISEVTQGLKAIAKELNIPIVALSQLSRSVEQRDDKKPQLSDLRDSGSIEQDADIVMFLYREEYYELRKQPSEGNNKHREWQEKMEKIRNIAELVIAKQRNGPIGSVKLYFDSNRGAFKDYTERHSS
>NC_002978.6|WP_167513689.1|335569_336724_-|hypothetical-protein
MNKNNVPYYIAGTLAALTLLASGVFAAAPYIGFLAPVAALSVGLPFIIGGAVFSAVAIALSYQAISENKTNSELKNKMKAQEQTISGQKTQLAKKEAEVKAKEEENSKLKNKVEAQEEENSKLKDQVRTQKQKSSEQKTQLAEKNKKIEEDKLKVAIADGTVQLAKGTVNSAVWFAKEAVNGVLYSGKYAYDNYVPSTESTKGTLSGIGGGLKNTYDASIASVRGALNSVGSSLYSRIYGTKVSSPEEQFKREDGSKPSMQELTRLDYLNLEVLSSEQKQRANSLDYLNIDNVPKQPDHLNVDAAKSYLMSLSEDQDVFYDAESGDEKGTEISSPESQPTKEENGQGWFAWSLGKVKSAITEVVVIGADVTKPYCAKVTKALAT
>NC_002978.6|WP_010962530.1|333858_335496_+|methionine--tRNA-ligase
MEQFENFYITTPVYYVNDKPHIGHAYTSLLCDVVARFMKLAGKNVKFTTGTDEHGQKIEKAAKAKEMQPKEFTDEVSVSFKELAKFMNFEYDDFIRTTEERHKKAVIALWNRLEERGQIYLDSYSGWYSVRDEAFYQESELIDGKAPTGAEVQWIKEESYFFRLSNWQEKLLELYKNQPSFIFPESRRNEVISFVRSGLIDLSISRTSFNWGIKVPGNGKHVIYVWIDALTNYLTSIGFPSTEGEEYKRFWAEPETQIPVSSTGMTPNQGKTQIPVSSAANLADNSFNVHVIGKDILRFHAVYWPAILLAADLPLPKQIAVHGWWLNEGEKISKSLGNVIDPIGLAQEFGVDQLRYFLLREASFGQDGNFSKKNMISRINSELANNIGNLVQRTISFLHKQCSGIVPTIDQSLLKGEESLPGCKAILDQVMNHLSKYEFNHIILLIINISSEANAYIDKSAPWTLSKTDRERMNLVIYKLLEYIRIIGILLQPIVPKSAEMILNQLQIPKEQRDLKSLCDACVSSGITLPKPTPVFLRVDAKEEK
>NC_002978.6|WP_010082521.1|333278_333719_-|TrbC/VirB2-family-protein
MIIERTMRNFLVILFIVFYAFDAHADGATDVMCNVIGYVHGIGGPMITVVIIGSSLLAIFGRMPWPALFALGMFVAVFFGAPQIVTKVTEKEVCCLFKGQTLENGKCVAAPGYERVGTGYACRSGWALTNKGYCIKAGQDPSKYWK
>NC_002978.6|WP_010962529.1|332091_333267_+|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MLGIVSIASDHAGYELKSEIKPYLEALGYRVVDQGCTAKQKCVDYPNYAVKVVEDITSKKANYGILICGTGLGMSTVANRFEGIYAALCNSVEIAKLAREHGNANVLCLGAGFTASGLAKDIVKQFLETEFSKESRHKKRLDKLSNITSKKKKTKTYNEDEISKFAKMAGQWWDENGKFKPLHIMNPVRVSYIIEKIKELKKCNLKELSLLDVGCGGGILSESMARVGINVVGIDVCEENIKVAHSHAKKVGLNIEYIHTSIEELSNDKKYDVVLLMEVVEHVDNLELFMKKAIELLKPEGLIFISTINRTIKSFCLAIIGAEYILNWLPKGTHNWNKFLKPSEIANHLRENNVTLQNMAGMEYNVIKREWNLTKGVDVNYILCGLLDLTL
>NC_002978.6|WP_080717604.1|331800_331857_-|hypothetical-protein
MYNKNWIPVSSTGMTPSV
>NC_002978.6|WP_010082533.1|329442_331191_-|DNA-primase
MDHIDIIKSKLLLSDLVGKKVRLIKRGDSFVGLCPFHNEKTPSFSVSNTKGLYYCFGCLASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNKLFLALDLAANWFAQKNQGVVDYLKQRKILPKIIDKFKIGYAPSSGLKEYLNSSGIEDKILIDIGLVNKNFHDYFYDRLIFPIQSIAGRVIGFGGRALSSEQQPKYLNSPESQLFKKRENLYGLNFALSEIRKKQHILVVEGYMDAIALHQAGISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALLILEPGYTLKFVTLPSNKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSIRRYYRDYFYNKASELRSSFKKQIFNSKTRATKGEYLHNKSPELIEAEQNQAVILRIAVEFPEILNRPIFFEQFSHFEFTNEMKRLQQRIIDVISNKSNLDKEALLQELKQFNVIKYVFEKTSVLNSQLNERKSAEIVWNNIVLLKELNALRKERTEARLSGNLDLEERLIEQIKQIESSIQEMQMEFIEK
>NC_002978.6|WP_022626255.1|341470_344692_-|UvrD-helicase-domain-containing-protein
MRSNAINPNFSVWVNASAGTGKTKILIDRVLRLLLENKRNILCLTFTNAAANEMENRIHSILSKWAICSDSVLAADLEQLDFFPMSSQCVTLGSRKNKDYLTRARRLFSELENLGLTIQTIHAFCYKLISSFPIEAGIAPNCTLSECKELHSIIFNKVLHNETVQDDINLIATEIDENKLRDLLYTLCVKRSASANDSKYIKDKLSAPDEIHDLQSETIEHVERLAEILSEGSKRDQSYSEILYSTVIPAGIQKKRTSVTRWNDTKVENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRTSSLLGVFKVYVDLYNSEKSKNALLDYNDIINLATNLLSNPNYKDWILFNLDQKIDHILVDEAQDNSISQWKIITNLCDEFFAGNDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQYFHTKTGGRDWISCQLEKSFRSTPEVLMLVDRIFNNFRAEISFNDNEIKHVPHRENDQGYIEIWPALPRRKEKEQQALQIPLTCRENYIIADRLLAQTIANRIHNWLNEGRILVAKDRHIEPRDIMILVRQRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQDLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEHSLWERIQDYSVVIYSELNYLINLSRIESPLALFTHILRTGKKKFAARLGLECFEVLDEFMNLVLQFENPSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRNSESIIFDGTEVPFWCGKNNNAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYILSKEPVQKGSWYDLITKYGEPYEKKQRDLQPIFKEKVEVLCVNANYPYIYKKRDYFDVPVISLPPALAHSSVSSQRVTLESSEKEGAEWIPVSATWMTDGYARGLIIHSILQYMPKIEKERRKNWVRKYLDNISEDKDEIYSKILAFNEKYGYLFDLEGKSEITLSGTIDGKSVLVRLDRLCITQDKAIIIDYKSHRNVSVSLLNEIKKQMLIYKTLVQEIYPNKQVECVVIWVEDLTIQSDF
>NC_002978.6|WP_010082535.1|344773_345640_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MKSFCVKAPAKINLFLHVVDKKETGYHLIEGLFVFANLSNFLEIKVGEKDSRYDNSTVEFINSESKINNQYNTVMKAVNLLLRHAPVRTKVTVKVVKNIPIAAGLGSGSSDAGAVVRTLGKLWEIDRTILNEIALNVGADVPASVDSKPVFVRGIGEELCHIKKFSLPTNVVLVKPKKRFLSTPEVFSKHEGKFSEPIKWSDDAEKDLLKFLKETRNDLQEIAISFVPEIKDVISTLKSQEGSILSRMSGSGVSCFGIFDSEENAKAAAVNIGKKQPEWWVCNTQLIV
>NC_002978.6|WP_010082536.1|345643_346009_+|Mth938-like-domain-containing-protein
MDITPLISENKNLINGYREGKFLVNNQEYCGSIIIFPEKVIKLKESDINSKEYFESFLTEEIEILLIGTGKTRNILSSSVKSYLMEQKGLNFEFMTTGSACRTHNILISEDRFVVSYLIAI
>NC_002978.6|WP_010962536.1|346010_346811_+|metal-ABC-transporter-permease
MLTQDFFINSLVAVVVISLVTGALGSFMIWQRLSYLGDSLSHSSLLGVALALIFKISPSLSIMLIAITFAILLSLNFNRLYSADTILNIVTNVVLSSSLILMSFLPSGNNSIISSLFGDILTLDQSDIVLIFLTSAVVTLILIFRWRYWLMISINQDLAVVEKINVTFVRLEFLITLAIFIAIAAQLIGILLIAAFLLIPAASARLISKTPMQMIIVATVFSVISGISGLMLSASFDLLTGPAIILVAAVYLIIAYFIRLVLSRLA
>NC_002978.6|WP_010082539.1|346942_347122_+|hypothetical-protein
MSEEGFFSKYISQPVKKFYNYITGKTEESDDVAGDVHNIAQGDSESLDTHVQSNENDII
>NC_002978.6|WP_010962537.1|347127_348120_+|DNA-polymerase-III-subunit-delta
MRVTPSKVKKFLEKPDALRGVLIHGSDNSRVDFYVQEIIANLGEYSVQVMDFAIVNKSPSLLFSELANVSMFTSKKLIKLINVSGGISKELKNVLDYNASGHYVMMVANDLPYNSATKSYMESSKIFGVIACYKDSNSNLYDIISSYLKQNDIKCTNEIIYHLQSYFNHSKLPICSELEKLVLYLGERKDLKLTDIELCFSTSGNDYATLDDLCSAIASKDMSRFIRISDALISQENFSPIALIRIISNYFLRLENVLLSVQGGMSEQAAIDQLSPPLFFKQLQSFKSHLKSLQLSELKKILEKLISLEVTCKKTDLDHKMIFQHALTGS
>NC_002978.6|WP_010082541.1|348289_349336_+|Fic-family-protein
MFDISKIVITPEMLKLVAEIDEFKGAWQLFGNLAPERLQMLKKIATIESIGSSTRIEGARLSDREVEQLLSKLDTRSFRSLDEREIAGYAYVCEEVFQNFNKMPFTENTIKQFHIWLLQFSYKDQRHMGEYKKFPNHVEAFDESGKSLGIVFETASPFETATQMQELIYWTSQQLEVKSLHPLLIIGIFIVTFLAIHPFQDGNGRLSRILTTFLLLKLGYIYVPYSSLESIIESNKESYYLALRRTQQSLKTSSYDFNPWLIFFLRSLQKQKFHLEQKVSHEKVLNLYLPPLSAKVLALLSKHGRLTIKDLENITKANCNTLKKHVSNLVKSNHITQHGKGKATWYVI
>NC_002978.6|WP_010962540.1|349681_349894_+|hypothetical-protein
MTVVRVSSQCPDTGIQKSLLVSKQTSIEKRFRLDCRKARFQTGMTSFTMYHIAIVVVKALGSEIAVFVQL
>NC_002978.6|WP_010962542.1|349960_350746_+|4-hydroxy-tetrahydrodipicolinate-reductase
MKIRVGVIGCLGRMGKKILNELITNTKVEIAGAVARSGSKYIDSDIGPIIANLGIKVTSSISGIFESSDVVIDFTTKECMLDCLKAAVKFKTPLVSGTTGIEGVDLKEYAAEVPILWSANMSVGVNVLLKLVKKAAELLGNEYDVEIWEMHHNLKKDSPSGTAIELGKTIANASKVDFQSNQYLHSGSNIRKKGGIGFAVSRGGGVIGDHSVMFVNSDERIELNHKAIDRTTFARGAVQAAVWLYENKREIPGLYSMQDVI
>NC_002978.6|WP_010962543.1|350742_351501_+|phosphate-ABC-transporter-ATP-binding-protein
MSNTRASVKDLNLWYGSKQVLFDINLNIYKRKVTTFIGPSGCGKSTFLRCFNRMNDYVPGCKTVGELDIDGLGDIYSRDMDVVLLRAKVGMVFQKPNPFPKSIYDNVACGPKLHGMAKDKQKLNEMVENSLTKVGLWEELKDRLQDSALNLSGGQQQRLCIARAIAVKPTILLMDEPCSALDPMATNAIENLIQELKLRFTIIMVTHSMKQAKKLSDSVIFFHNGRIVESGSTQEIFENAQSLLTKEYILDH

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Crispr_ID: NC_002978_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_4

403307-403411

Orphan

Consensus_repeat	Method
GAGGAAGAAGAGTTTTTTGATGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_4

>merge|NC_002978|4|403307-403411|CRISPRCasFinder
GAGGAAGAAGAGTTTTTTGATGCTATGGAAGCTGTTTCTAATGTAGAAGAAGGGAATAATTTAGGTCTTGCTACTTCAGAAGAGGAAGAAGAATTTTTTGATGCT

>NC_002978|4|4|403307-403411|CRISPRCasFinder
GAGGAAGAAGAGTTTTTTGATGCT	ATGGAAGCTGTTTCTAATGTAGAAGAAGGGAATAATTTAGGTCTTGCTACTTCAGAA
GAGGAAGAAGAATTTTTTGATGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_010962582.1\|408151_408415_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962578.1\|396714_398034_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NC_002978.6\|WP_010962581.1\|405699_408039_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_002978.6\|WP_010962585.1\|410148_410625_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223783
NC_002978.6\|WP_010962572.1\|389856_391659_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_002978.6\|WP_010962586.1\|410630_412229_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133049
NC_002978.6\|WP_010962589.1\|415335_416091_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	unknown
NC_002978.6\|WP_006014985.1\|409429_409657_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|181027
NC_002978.6\|WP_010962588.1\|413187_415263_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|227111
NC_002978.6\|WP_010962583.1\|408644_409370_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NC_002978.6\|WP_007548816.1\|388607_389231_-\|heme-ABC-exporter-ATP-binding-protein-CcmA	unknown	unknown	gnl\|CDD\|237421
NC_002978.6\|WP_010962574.1\|395340_395769_+\|protoporphyrinogen-oxidase-HemJ	unknown	unknown	gnl\|CDD\|367596
NC_002978.6\|WP_006279887.1\|394304_395285_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|274473
NC_002978.6\|WP_010962584.1\|409660_410140_+\|ATP-synthase-F0-subunit-B	unknown	unknown	gnl\|CDD\|184061
NC_002978.6\|WP_006280528.1\|391720_392983_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_002978.6\|WP_022626285.1\|412210_413239_+\|COX15/CtaA-family-protein	unknown	unknown	gnl\|CDD\|367131
NC_002978.6\|WP_010962573.1\|392990_393914_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_002978.6\|WP_010962579.1\|399815_403151_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NC_002978.6\|WP_010962571.1\|389234_389666_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_147155099.1\|395822_396101_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_010962578.1\|396714_398034_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_002978.6\|WP_010962581.1\|405699_408039_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_002978.6\|WP_010962585.1\|410148_410625_+\|hypothetical-protein	gnl\|CDD\|223783	COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion].	1.07491e-07
NC_002978.6\|WP_010962572.1\|389856_391659_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_002978.6\|WP_010962586.1\|410630_412229_+\|glycosyltransferase	gnl\|CDD\|133049	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of glucan.	1.48119e-157
NC_002978.6\|WP_006014985.1\|409429_409657_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|181027	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.	7.57609e-21
NC_002978.6\|WP_010962588.1\|413187_415263_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_002978.6\|WP_010962583.1\|408644_409370_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	2.59117e-53
NC_002978.6\|WP_010962574.1\|395340_395769_+\|protoporphyrinogen-oxidase-HemJ	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	1.47791e-57
NC_002978.6\|WP_006279887.1\|394304_395285_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|274473	TIGR03182, Pyruvate_dehydrogenase_E1_component_subunit_alpha, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	0
NC_002978.6\|WP_010962584.1\|409660_410140_+\|ATP-synthase-F0-subunit-B	gnl\|CDD\|184061	PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional.	3.17953e-14
NC_002978.6\|WP_006280528.1\|391720_392983_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.61029e-84
NC_002978.6\|WP_022626285.1\|412210_413239_+\|COX15/CtaA-family-protein	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	1.98097e-105
NC_002978.6\|WP_010962573.1\|392990_393914_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.57795e-84
NC_002978.6\|WP_010962579.1\|399815_403151_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_002978.6\|WP_007548816.1\|388607_389231_-\|heme-ABC-exporter-ATP-binding-protein-CcmA	gnl\|CDD\|237421	PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional.	1.78036e-108

>NC_002978.6|WP_010962579.1|399815_403151_+|isoleucine--tRNA-ligase
MKSKHYPDTVSSPDFLSLEKEIIKFWQENKVFERSVEERSKDNCFVFYDGPPFANGLPHYGHLLTGFIKDAFARYQTMLQKRVERRFGWDCHGLPAEMGAEKELGISGRTEIEKFGIDKFNDHCRTSVMKFSSEWEKYVNRQARWVDFHNDYKTMDKSFMESVMWAFKQLYDKGLVYESVRVVPYSWACETPLSNFETRLDNAYREKVSKAVTVAFELLENPQQFKSVKRKCKLLAWTTTPWTLPSNLALAIGKDIKYCAVSVHPLMSFQRVTLESISGSQCLGTGMTGSSEGSSMNGEIYIFAESYLEKFISHSEQNNIPYENCNIKLKANDLAGLSYKPLFDYFKDTKNAFRVFIADYVTEEDGTGVVHTAPGFGEEDFYLCQSHDIPVICPIDNSGKFTAEVSDLAGVHVFDANDTVIKKLKGQGSWFKTEQYIHNYPHCWRTDTPLIYRTMPSWYVAVTKFKSRMVELNKRVNWIPNHIRDGQFGKWLEGAHDWSISRNRFWGTPIPVWKSDDARYPRVDVYGSIEELERDFNVKIDDLHRPFIDTLTRLNPDDPTGKSVMRRVPDVFDCWFESGSMPFAQIHYPFENKEWFESADFITEYIAQTRGWFYTLFVLSTALFNREPFKNCICHGVVLDVKGQKLSKRLNNYADPMEVFDRYGSDALRFLMLSGSIICGGNLLLDKEGNSIRDVLKNVIKPIWNSYHFFTMYANADGIKAEVCKDYQSTIDRYMISKCFEAVESIQASMNSYSSQEACKILIDFFEVLNNWYIRRSRERFWKSDLDQDKTDAYNVLYTVFYYILRAAAPLLPLITENIWQGLKYEETSVHLANFPQLEKFDSQLIAKMDLVREVCNSALSIRNTFNIRIRQPLGSMIIYHQSSCSFLEGEPLSVIPEFFPVIQVADTGIQCAADSNEYQEMIKDEVNVKSLELVNRLEGIASLELKLNFPLLGKRIPDKIKKLVQYVKEGKWKQVENEQIFLGDESENYIIEKGEYELLLKANSEYSSVFDNNKGIVILNTELNDELILEGLARDVVRLIQETRKQADFHISDRIRVIIKTEEEKIKEAINTWFEYIKEQTLALSLDINTEIGTNFYSKEYQDLSVSIER
>NC_002978.6|WP_010962578.1|396714_398034_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MKGLYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGKIHSLRKEMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRSKGHVINTDFPEVAKFDKLPDECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREALKLVANGANEINLLGQNVNAYHGECEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVNVKVLEARQSSLLGCAFH
>NC_002978.6|WP_147155099.1|395822_396101_+|hypothetical-protein
MYNTEIKIPVLPFLSSQCLTLGSSFLYKFTKSASFYNAKPILTKLNALLAIKSPGCQCQATRMTPFFFLDPSVSYLHDTILFPGSQSALLHR
>NC_002978.6|WP_010962574.1|395340_395769_+|protoporphyrinogen-oxidase-HemJ
MNYYHWLEAFHVISVIMWMAGMLYLPRLYVYHATVKPGSENDSLLQTMEKRLLRYIINPAMLFSLGLGITLMVIREAYREGWFHVKAFAILLMLIIHMLLAKYRKNFAMGSNKKSHIYFRVLNEAVTALIIVIVIMVVVKPF
>NC_002978.6|WP_006279887.1|394304_395285_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MKAENFTKEQIIGFYRKMLLIRRFEEKAGQLYGMGLIGGFCHLSIGQEAVAVGTQAASKLGDAFITSYRDHGLMLACDSDPNVVMAELTGKETGCSKGKGGSMHVFDVEKKFFGGHGIVGAQVPIGTGIAFANKYKKKDNVVFTYFGDGAANQGQVYESFNMASLWELPVVYIIENNEYAMGTSVQRSTLVTELYKRGESFGIPGKQVDGMDFFSVYEATSEAAEHTRSGKGPILLEMKTYRYRGHSMSDPATYRLKEEVEDMKQNHDPISTLKKYMTDNKMASEEECKVIDKEIRDLVKKSEDFAKNSKEPSVDELYTDVYKFVS
>NC_002978.6|WP_010962573.1|392990_393914_-|RluA-family-pseudouridine-synthase
MLQSIKTILIEDDNVRLDRYIRRIFPDLKQSVIEKSLRKGLIKVNDCKAKSSDRVNSGQTITLKHLNYIENANSDRKYNEKLVNLLRENILYEDEYILAINKPAGVIVQGGVKVKISMSDLLDQIREGETFKIVHRLDRDTSGVIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSGQEKVVVDENSPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHINCPILGDGKYGGKKAFIDGIANKIHLHSHSLSLKLPNNKEITITAPITKHIEKSIEALFFD
>NC_002978.6|WP_006280528.1|391720_392983_+|MFS-transporter
MNNIQKAILSGMICNMIVWYELTLFGVLTDTIINVFFPSEDHYLSTLKFLGVFAIGFAFRPIGAVIFGYMGDKYGRRKTLLTSVILISISSTIMGIIPGYKEIGLLSPVLLVFCRIVQGITAGGETSINTAFTIEHSKDKKNLGFLGSMKPFSGALGTLLCITMIFICKRVTGENYEIWGWKLLFYFCFFLGTIGFLTRYILKESLAYKTNKYANNLAHSPLLELVRNYKRPLIISINLGIAQNAIVYAAIMFYNISIKELVILSISVKDLMRIVIQVVFAASAVLFAILSDKVGRKRVMIPVLIMLSLIGTCVLPLLSSVNHYVVIITYLLITIPVGASFGIYGSVICELFPTKVRCTGVSLANNISAGIFGGLSPYICMWLIEKTETKLAAGIYLTACALISLISVLQIKAKDRKVDW
>NC_002978.6|WP_010962572.1|389856_391659_+|aspartate--tRNA-ligase
MNCYKTHTCEELRKNDVEKEVTLSGWLYRKRDHGNLIFVDLRDFYGITQLVFNNDKDFFDEISNLKLESVITVTGIVEARTEDTVNSSISTGEIEVIVNNLRVESEVEFHFDEEIAKEERSILVSITGEQEYPENMRFKYRFLDLRREKVRNNIILRSQIIAELRKLMIERGFLEIQTPILTASSPEGARDYLVPSRLNPGKFYALPQAPQIFKQLLMVSGFDKYFQIAPCFRDEDARADRSPGEFYQLDLEMSFVTQEDIFQIIESTLYRVFAKFSRKSVDKDFPRITYKEAMLKYGSDKPDLRNPLLISDVTEIFRDSGFNIFKSNIERGMVVRAIPAPKTAEEPRSFFDKKIEHAQKEFGAKGLGYITFDKDGTAKGPIAKFLDENRLNHIREATNIEPGDSVFFASDKENEAANIAGKVRTLLGSELSLIDDNIFRFCWIIDFPYFVYDDKSKKIDFFHNPFSMPHGGLKDLEDKNPLDILAYQYDLVCNGIELSSGAIRNNKLDIMYKAFAIAGYSRGEVDTRFGALVRAFRFGVPPHGGIAPGVDRIVMLLADEPNIREVICFPMNQQGEDVLMGAPSKVEDKHLRELSLKVIE
>NC_002978.6|WP_010962571.1|389234_389666_-|hypothetical-protein
MSFGQIIIYSIALLAIVKVFLFLRKIYKNRIRKIIFPRKVFKEEWEEDRKFNELYQKNKQKELMKQQEILREKQKDVQVYKEDPEIVDIAKPVGKWTKMVMMGNGLMQRFAQLIHREGGQKGFWKLFVKAQASTQGKHKGKGR
>NC_002978.6|WP_007548816.1|388607_389231_-|heme-ABC-exporter-ATP-binding-protein-CcmA
MLECENLSCTRNNKVLFKNLSFKAELKSKILITGPNGSGKTSLIRSLSGLLPPVSGNIRHCGKDIYDDPKSYISSMVYIGHKNACKDSLTVAQNVEFWAGIRNTRELIVAAICCLQLQPVLNIRYGELSAGWKRRVALARLLISNANVWLIDEPFCNLDSATCELVLNLISIRSEQNGIVIITGHSSTEQLCDFTTIDIRNFNRLLV
>NC_002978.6|WP_010962581.1|405699_408039_-|phenylalanine--tRNA-ligase-subunit-beta
MKFTLSWLLEYLETNASLEEITDKLTHIGLEVEDVIDNSRLTGFIVAEVLEVVPHPNADKLKLCKVDDGSKILQIVCGANNVREGMKTVLASLGSTLPESDFTIKPTKIRGVLSEGMLCSASELALVQEESEGIIELSDDYKVGDKFFNCDPVIDINVTPNRGDCLGIYGIARDLAATGIGTLKTLSIPQLTSSINSPIDVEVTDGESFISGIYIANVKNQESPKWLKDRLESIGMRSISAIVDITNYIMISFSRPMHAYDAKKIEGELTVRKANDGEKFAGLNGKEYLLNKDISVIAGDKNIHGIAGIIGGKCSECTLETTDIFLESAWFDPISITKSSRQLGISTDASYRFARSVDPEFTFDGLNLAAKMILDLCGGETSSVVSAGSLDSADTKVSFDYQDVNKFGSVSVSPDEVLDILTKLGFSIDKKTEGNWNVQVPSWRPDVTIPADLIEEVTRIYGYDKIKEEPLPNNVEEVDSTYDNLRILMTNRGFHEVLTWSFMSESTAEKFGYSNKLFIIDNPFNNSFNIMRPSIMPNLLQVTADNIAHGISDLAIFEIGPIYDGEAQSKYVLSGIRSGNNLPRNHYNTDRKVDVFDAKADCIAALEFFNVNCDNLTIEKAEKEHYHPGKSGTLSFKNKVAGYFGELHPNILDLFDIKQKVVGFEVILENIENLPVSRKKFIDYKYQSVKRDFAFIVNKDVEVGNIINVIKKSSELITEVLIFDVYHGNNIEPNKMSIALSVTFCSPIHTLTEKEIQKESSAIVNLVCENTGGTLRTYR
>NC_002978.6|WP_010962582.1|408151_408415_-|hypothetical-protein
MNEIDFINTNHPLNLEQEFGNGYIESVDCFLDEDTRDYYIGLNNAIIHFFFDGNIDEDAWDYESLKFFLEIDLKGDIEKILSLRKKI
>NC_002978.6|WP_010962583.1|408644_409370_+|F0F1-ATP-synthase-subunit-A
MALNPLEQFKVYTIIELPRLFGYDVSFTNSSFFTMISVILMILFLLFGIKKGSVIPGYLQAAVEYVYDFVISIIENNTGSKGLQHIPLIFTVFIFILSCNLVGVLPYSFTVTSHVIVTFALSMVVFIYITIVGFKEREVEFLRILLPKGTPSWLAPIIIIIKLFAYLVRPVSLSIRLAANMIAGHTIIKVIAGFIVNMNIFFTPAPFLFIIALIGFEVFVAILQAYIFTILTCVYLSDAVK
>NC_002978.6|WP_006014985.1|409429_409657_+|F0F1-ATP-synthase-subunit-C
MDLVALKFIAIGLAVFGMLGAGLGIANIFSAMLNGIARNPESEGKMKSYVYIGAAMVEIMGLLAFVLAMLLIFAA
>NC_002978.6|WP_010962584.1|409660_410140_+|ATP-synthase-F0-subunit-B
MPQLDVSTFFSQVFWFLIFFSSLFFVVSCLFLPKLDEIISTRSKEVLGSFNSSVHLLRLTEDQITKYNAALTQARIQAKKIIDDALAQVEEMRANVKNILEEEDKKKSKLIEKKVAEFKSEYTDQLKQMATSIALIYYTKLTNSEIEEEFIADLVSKEF
>NC_002978.6|WP_010962585.1|410148_410625_+|hypothetical-protein
MSTSLIIGLAFLVSFVLSYKLLKKVIKNALNNKRNKSKFSSEETEKFRKDMLEYYKKSSKKYKELDAEVNKMMNEALDKANSIIKHNRQQLDQTLDDNAHSNLKKVTDQVEKALRDLQANTASIAADAVKKIMHERKDDKRSSEVISSFSRDLNKKLH
>NC_002978.6|WP_010962586.1|410630_412229_+|glycosyltransferase
MPILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNDTTFFMVEDTSRDINRWVEAHYGIDYVLIKVDSEQILNLLNSHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTSILTLTEKYTYFALMLIFIIGCSSYLFKFIATVFSLCETSNQKVDYSKLNEEDFPIYTILLPAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHSLPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKDDDKLACVQAKLNYYNCDYNFLTKFFSLEYMNWFQYLLPGFQKMNMPIPLGGSSNHFSVKILKEVFFWDTYSVTEDADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWIKGYMQTYIVHLKNIKSLYKHTGFKGILLLNLFVGSAAFIFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVKQQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL
>NC_002978.6|WP_022626285.1|412210_413239_+|COX15/CtaA-family-protein
MEAKPVAIWLFLCSVMVILMVGIGGFTRLSKAGLSITEWKPITGTLPPLSEQDWLQEKLKYEATPEYKALNYGISMEEFRAIYLIEYVHRLVARLTGLVFVLPFIYFTLRRKISKKVVIKLFVALLFGALQAFAGWYMVKSGLVAKPHVSHYRLALHLLLALIIFALFSYQFFDYQIRPKQTKLKISCNTKYYVGIILVLIMIQIIFGAFVAGLNAGLIYNTFPLMDGQIVPEDLFFLQPTWLNIFENRATVQFIHRALALLILTLVVILTVKNASIKPVYIMLLSVIIQIILGVITLLLHIPIAIAIAHQVFSFILFGSSLYFLCYLRKQTTSPICTFFPS
>NC_002978.6|WP_010962588.1|413187_415263_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MIEKKYSKILIANRGEIACRIIRTAHKMGISCVCIYSDADVNSVHVRQADESRYIGPSPSCLSYLNIEKICEVAVETGAEAVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAARKAGVNVVPGYMGKISNAAHAAQVAKEVGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVSLAKQVGYFSAGTVEFVVDQDQNFYFLEVNTRLQVEHPVTEFITGIDIVEEMIRTSCGEKLRFNQDDIKLTGSAIESRICAEDPSKKFFPSSGRIKYYDKPGENDYVRIDDGVAAGSEISMFYDSMIAKVITYGKDRVEAISRMQKALSECYIEGVTNNIEFLESIFHHPNFIAAKLHTRFIPDHYPSGFHGDFVTEEYIKIFIFTALYVHLENEERYHHKAVNETSQVSFQCVTLESSKKEGAPVSATRMAGDRARDLFIVNINDNEYSVNAKYQDNILITVYNHNKYSVIGKWKSSYRLLYITINDDTNIALKIERQGSKYFIRHAGMKAECCIFKPHVAELSRLMLNNETEGISADAVKSPISGLLVKLHVNVGDQVEIGQPLFVVEAMKMENIICAEAAMVIKNIPVQEGKNVQIGDVVCFLK
>NC_002978.6|WP_010962589.1|415335_416091_-|ankyrin-repeat-domain-containing-protein
MDGLVDIAKLLSDNEANINWRYTGPFDKTKQRVQAGNLLHLAARIQNKGKFVDICKKNIASVTAHNEYGDNPFHEAARSGILLPAVQEIVNDLEKEANNKITKAEEAGDRKEVSRLKEELKCNKKYIKDALCSKGYAFNKKRETPLYYLNAAQQKEIKQIAGIKDSFICNQKFHLCLYIIGAIACIAALCLSLYFLFLVSQSFALSSMVAIASGGVTYLSVKACSEIHALHNESTLVENANVQLAGESLGV

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Crispr_ID: NC_002978_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_5

522059-522169

Orphan

Consensus_repeat	Method
GAGATACCGCGGCGGTATGAAGGTTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_5

>merge|NC_002978|5|522059-522169|CRISPRCasFinder
GAGATACCGCGGCGGTATGAAGGTTCGCGGTGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGCGG

>NC_002978|5|5|522059-522169|CRISPRCasFinder
GAGATACCGCGGCGGTATGAAGGTTCGCGG	TGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTA
GAGATACCGCGGCGGTATGACGGTTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_099606204.1\|532314_533147_+\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_002978.6\|WP_010962664.1\|524667_525501_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_002978.6\|WP_173862902.1\|522942_523086_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010082212.1\|514669_515296_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_002978.6\|WP_010962659.1\|516821_517565_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NC_002978.6\|WP_010081840.1\|519670_520042_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NC_002978.6\|WP_050707712.1\|531781_532234_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NC_002978.6\|WP_010962663.1\|522250_522694_+\|PD-(D/E)XK-nuclease-family-transposase	unknown	unknown	gnl\|CDD\|372314
NC_002978.6\|WP_010962665.1\|525615_525807_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962660.1\|517575_518436_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NC_002978.6\|WP_010962661.1\|518416_519265_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NC_002978.6\|WP_006279325.1\|513886_514393_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NC_002978.6\|WP_010082163.1\|525903_526791_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NC_002978.6\|WP_006279327.1\|515285_515981_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|376506
NC_002978.6\|WP_022626293.1\|529826_531785_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NC_002978.6\|WP_010962658.1\|516256_516814_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_002978.6\|WP_010962662.1\|520122_521943_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NC_002978.6\|WP_010962666.1\|526781_527660_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_002978.6\|WP_010962656.1\|514461_514653_+\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|226826
NC_002978.6\|WP_010962667.1\|528615_529788_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_099606204.1\|532314_533147_+\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.41242e-30
NC_002978.6\|WP_010962664.1\|524667_525501_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	2.60644e-22
NC_002978.6\|WP_010082212.1\|514669_515296_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.80971e-39
NC_002978.6\|WP_010962659.1\|516821_517565_-\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	1.50602e-134
NC_002978.6\|WP_010081840.1\|519670_520042_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	1.75586e-34
NC_002978.6\|WP_050707712.1\|531781_532234_-\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.000608546
NC_002978.6\|WP_010962663.1\|522250_522694_+\|PD-(D/E)XK-nuclease-family-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	5.58069e-17
NC_002978.6\|WP_010962660.1\|517575_518436_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	4.8008e-117
NC_002978.6\|WP_010962661.1\|518416_519265_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	4.71062e-140
NC_002978.6\|WP_006279325.1\|513886_514393_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.09825e-85
NC_002978.6\|WP_010082163.1\|525903_526791_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.1729e-140
NC_002978.6\|WP_006279327.1\|515285_515981_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	1.91293e-111
NC_002978.6\|WP_022626293.1\|529826_531785_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	6.82408e-14
NC_002978.6\|WP_010962658.1\|516256_516814_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	8.86584e-86
NC_002978.6\|WP_010962662.1\|520122_521943_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NC_002978.6\|WP_010962666.1\|526781_527660_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	2.89009e-146
NC_002978.6\|WP_010962656.1\|514461_514653_+\|zinc-finger-domain-containing-protein	gnl\|CDD\|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	8.47091e-06
NC_002978.6\|WP_010962667.1\|528615_529788_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0

>NC_002978.6|WP_010962662.1|520122_521943_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIFGVVSSGDSVIPTLLTGLQKLEYRGYDSSGIAIINNEGKIEVKKSEGKVERLCEVVDDSKMSHSTVGIAHTRWATHGVPGLKNAHPIRTNNVVVAHNGIIENYNLLKKGLEERGMSFHTDTDTEIIPNMLTLYLDEGLSPIDSLFKCLNNLHGSFALVLLFAEYPDALFVAKRNLPLAIGYNCNTVFAASDSNALSAFVERISHLEDDDIAVIKSSGVSIYNNGTQVKRSIENSSPSDFLISKNGYPSFMLKEIFEQPRALNKTINQFYKQYKEVIFANKKLFSELSYITIVGCGSSYFAGLIAKYWLENVAQVRVYLEISSEFRYSNVKLEEGSIGLFISQSGETADTIEALRYAKSQKQTIISITNTFSSSIEKISDIVLHTLAGPEIGVASTKTFSAQLATLACFAVELGKIKGVLGGERIKQLSNAINSIPEYVEHVLNVMKIQHISDSILEHNNVILIGRGSSYGVAMEGALKIKELSYINTTGIAAGEMKHGSIALIDSTVLVIAIIPYDDLFFKTLSNIQEIIARKGKVIAFSDKQGAPFLRGVCADVVQLPDTDNFISPIIYSVAMQFLAYFTAAKKGLDADCPRNLAKSVTVE
>NC_002978.6|WP_010081840.1|519670_520042_+|preprotein-translocase-subunit-YajC
MLISEVFAADATSNTSSIGASFASFIPLILIFVVFYFLIIRPQQKKLKEHRKMIDQIKRGDTVITSGGIIGEVNKVDEANAQFIIEIAPKVEIKVLKSAISEVLSKETQKVAAKPIKKVKSKE
>NC_002978.6|WP_010962661.1|518416_519265_-|30S-ribosomal-protein-S2
MTNLPKVTVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAFQGGRILFVGTKFQAFDIIASEAIRCGQYYVNHRWLGGMLTNWGTVSSSIKTLMQYEKILNDEDSILTKKELGNIEKKKQKLDKALGGIREMGAIPDILFIIDTNKEHIAVKEAKKLGIPIVAILDTNSDPDGITYLIPGNDDSRKSIELYCKLATDSILAGIESSLAKSGVKIDDIRGDEFIQEKEDGIVQTKRRRSKVYKEEEREVVTNEDESR
>NC_002978.6|WP_010962660.1|517575_518436_-|elongation-factor-Ts
MKMNPDDIRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVAMCLTENCGVLIELNCETDFVARNEKFIELVLNLASIAHQERCTSVDELKNAKYESIGTVQEAIMNGTSVLGEKLELSKLCYLEAKDGVIAGYVHGDVCGLGKIGALIALQSSGDKAKLQEIGKQIAMHVVAMKPEALSIDDLDQMKLNNERSIIEEQVRSLNKPEEVAKKIVDGRMAKYYEEVVLLEQKFIKDDKMKISDFIKSSELSAVKLSNYELLVLGDAD
>NC_002978.6|WP_010962659.1|516821_517565_-|UMP-kinase
MFISTNEKSEIKYSRVLFKISGEALMGSKQFGHDMEAIGELSKGIVEVCNLGVQVCIVVGGGNIFRGTSASLSGCERASSDYIGMLATIINALILQNFLEKNLVASRVLSAIPMATVCEPYIRRKAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAVEMNCDVILKGTQVNGVYSADPKKNEDAVMYDRLSYTDLLTRDLKVMDASAISLARENSIPIIVFSLKGEKIVNIIKGQGTYTIVSDCKQ
>NC_002978.6|WP_010962658.1|516256_516814_-|ribosome-recycling-factor
MLNEIKAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKVWDISVVGEVKNAILNANLNLNPVVEGSTIRIALPDLTQETREKLVKLLHQFAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDDNIKKIDGELSIKEKDILNH
>NC_002978.6|WP_006279327.1|515285_515981_-|di-trans,poly-cis-decaprenylcistransferase
MLNQESLPKHLAIIMDGNGRWANNQGRVKIDGYKKGSEVAYDIAKYCTDLTIPYLTLYAFSMENWLRPKNETDCLFDLFYSVLTNEDKVNFIYNCNIKLNFIGNLSLLPSKILDQIKKAEEMTHKNDGLLLTVAVSYGAKQEITQAISNIIKENIAYVSEEEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKKYGR
>NC_002978.6|WP_010082212.1|514669_515296_-|phosphatidate-cytidylyltransferase
MVDNNFIIRMLSSIVILFIFSFATYFSDLSFYLLIFSIAVLSSFEWYNLTQGNKILYVFALLLIALPSASLIYLYNLPQGKYALVWFVLTIWGIDVTAYLFGKNFGGAKICPIISPGKTWAGLLGAILAGVVCTIFGSIFFGLFSIFYSPIIGLAIAILAQLGDFTESLVKRAYGVKDSGNMIPGHGGVLDRMDSFIFTAPLIAIYIS
>NC_002978.6|WP_010962656.1|514461_514653_+|zinc-finger-domain-containing-protein
MSKVRVNNRKVCCHGDENDEGSGHPLISLDMGEEEEIACPYCEKTFVHDCTVEAVGELTRDEL
>NC_002978.6|WP_006279325.1|513886_514393_+|pantetheine-phosphate-adenylyltransferase
MNINDKIGIYPGTFDPITFGHLDIIKRACKLVDKLIIGVAENVNKHTAFDTKLRTSMAENEIKGLGIDADVISFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSSFVKEIARLGEDVSKFVSKGVQNELINLNRIKNGE
>NC_002978.6|WP_010962663.1|522250_522694_+|PD-(D/E)XK-nuclease-family-transposase
MALSKFLDPKLDLTFKKIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIQDAEIASKKQSIVDVLCRDENGVQVIVEMVRPESLRSYCLKGEEFIQKETERILKLIEPDVLPSESTHQCELGNQLVPSDADNEPPLDKEDAQS
>NC_002978.6|WP_173862902.1|522942_523086_+|hypothetical-protein
MAGNPQGMLMDVQVKDNGESECHFVTKWIEFVTLIRVKTSRLPFGPS
>NC_002978.6|WP_010962664.1|524667_525501_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVREKKDLDKGLKRSVGKPACCVSKGGSSSNTTSLPNQVAKTKGFEKRAQLYAAKAYSRQADKSGKYVDLKKIFFIAISNCTLFPDKLDYISSHTIRDEKTNEHDLKDFQFIFIELPKFPKSREEQLESVVDRWLFFFKYADETTDEDLRKIAEKSPIIKLAYDELDKFHWNEKDLITYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEGKIEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGY
>NC_002978.6|WP_010962665.1|525615_525807_-|hypothetical-protein
MVNLVELCKNLERKIAKLYQFSLLVNQISDIVELFNCGVRKKGNSMAFFLLLSIRLLCSGNWY
>NC_002978.6|WP_010082163.1|525903_526791_-|UDP-N-acetylmuramate-dehydrogenase
MLISLPKVRGIYRYDVLMSKATWLNVGGRADVLFKPCDIEDLTYLIKNTELPVSVIGATSNIIVRDSGIRGITVKLGKEFAYIKSKGNNSIVAGGAVLLSNLAHFAGNQQISGLEFLVGIPGTVGGGIEMNAGAYGSDIASVVQSIKAVNLEDGNLYEFSSEEMGYFYRGHSLKGNWIFVEAEFKGVNSEYELILQRLKEVIERKNKSQPIRGKTAGCIFKNPKNYRAWELIDKSGCLRLNIGGARISKKHCNFLLNYDNATASDLENLGNKVKDAVKDKFNVELEWEIRVLGSY
>NC_002978.6|WP_010962666.1|526781_527660_-|hydroxymethylbilane-synthase
MLVKIGTRGSKLAVAQALEAKQKLLDSFPNLSIEIVKIKTSGDKYANANLAEIGGKGLFIKEIETELLENNIDMAVHSLKDMPAFFSGGLTIPCVLERLSSCDAFISHKHNSLESLPQQATIATSSIRRKVQLLNVRPDLNIVPLRGNVTTRLQNQSFDGIILAEAGLIRLEKHHLITEVLPPKVMLSAVGQGAVCIQCRRNDVKIIDLLEKINNNMSFIGVKSERSFMKTVNGSCFTPLAALAEYVSENMLHLRCMLASGKNIYFTERTSFIEDAEKMGMDAGLELKSKCL
>NC_002978.6|WP_010962667.1|528615_529788_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSKIIEIRAPKTLGGESVTEGIVKIKKGIGEAVKVDDLIFEIETDKTALELTAEASGQITEFLIKEDDVISPDQLLAKLSMGEVKEEARKEDKSESAAKKDAPSARKIMEENAISAESVKGTGMGGRITKADVIGHMNKAEQPAIKQYELPKSVVNGEQREERVKMSKIRQVIAARLKASQNTAAILTTFNEIDMKNVMDLRAKYKDAFEKKYGIKLGFMSFFIKAAVQALKEIAEINAEISGDEIIYKHYYDVGVAVGTDKGLVVPVIRGADQMSFAEIELTLVALGKKAREGKLQVSEMEGATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRPVAVGNAVEIRPMMYIALSYDHRIVDGKGAVTFLVKIKNYIEDPNRLVLEV
>NC_002978.6|WP_022626293.1|529826_531785_-|tetratricopeptide-repeat-protein
MITSRNQKWGDIKSLTLGAFTEPESIDFIRKALGIKDGSQENEIKNLAETLQHFPLALQQAVAYIKERDIALKNVGLKFEISDYLKRYKEEAEKLLDFKFPKDSDNSYTKTTFITWRITIDKIKDNPEYGQQAKEILDIIAYIAPDNIPAKMFLGVERNEEKLGDAIQLLKQYSMINPGEEQSSVNIHRLVQQVTRIELEKQGKDKVVKKTFELLEESFPYGSDKLEDYAKKRQLLPHLEAFLSHVDNWLTKNPSEKQTIEKDYLVNLLIWIGDGYFDLDPRRQKKSLERVLPIIKKHYGSDHFQAAITLANLGIAYGALGDPQKEKELLERALPILKTHYSPDHFEVAKLLANLGNAYGYLGNYKKQKELLERALLTFEKHYGTGHPEVARTLISLGTAYRALGDPQEEKELLERALPIFKEYYGYDHFEVAKLLANLGIAYGALGDPQKEKELLEQALTIKEKYYNSDHFEVAITLTNLGISHVDLGDYKKQKELLERALAIKKKHYRPDHFEVARTLVNLGNSYRVLGNPQKAKELLEQALAIRKKHYGLDHFEVVKLLATLGIVYGTFGDHQKAKELFERALPIFEKHYGSGHVQVAKLLANLGIAYGALGDHKKQEELLEQALPIFEKHYGPDHPEVAKLLAELDDI
>NC_002978.6|WP_050707712.1|531781_532234_-|ATP-binding-protein
MRNPVGSFTGRTEELRELHKLIQKSQGVATVISQLVSISGLGGIGKTELAKKYIEEHSKDYDNNIIWIKAETHETMVQSFLRLARDPLGIPTEDRDIESIVRDIYAFFAKRKVSLFSIMQKNIEVKVKMLVLVNSYRPTFYHLMIINLVF
>NC_002978.6|WP_099606204.1|532314_533147_+|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWSRIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA

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Crispr_ID: NC_002978_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_6

537321-537566

Orphan

Consensus_repeat	Method
GCTTAGCAGCATAATGTAAAGGAGTTCTTCCAACTTCACTTTGCACAT	PILER-CR

2 spacers

The CRISPR arrays of NC_002978_6

>merge|NC_002978|6|537321-537566|PILER-CR
GCTGAACAGCGTAGTGTAAAGGAGTTCTTCCTCCTCGATCTTGTATATTAACATCTGCTCCTTTTTTTAGTAAAACTTCTACTACTTGTGTGTGTCCATGCTTAGCAGCATTATGTAAAGGAGTTCTTCCAACTTTACTTTGCACATTAACATCTGCCCCTTTTTTTATAAGATGTTTTACTACCTCTATATGACCATTATTAGCAGCATCATGTAAAGGAGTTCTTCCAACTTCACTTTGCACAT

>NC_002978|6|1|537321-537566|PILER-CR
GCTGAACAGCGTAGTGTAAAGGAGTTCTTCCTCCTCGATCTTGTATATTA	ACATCTGCTCCTTTTTTTAGTAAAACTTCTACTACTTGTGTGTGTCCATGCTTAGCAGCATTATGT
AAAGGAGTTCTTCCAACTTTACTTTGCACATTAACATCTGCCCCTTTTTT	TATAAGATGTTTTACTACCTCTATATGACCATTATTAGCAGCATCATGTAAAG
GAGTTCTTCCAACTTCACTTTGCACAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_095866567.1\|540020_540362_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_002978.6\|WP_010962664.1\|524667_525501_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_002978.6\|WP_010962669.1\|534398_537005_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_002978.6\|WP_010082163.1\|525903_526791_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NC_002978.6\|WP_010962665.1\|525615_525807_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_041580627.1\|533126_534095_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962666.1\|526781_527660_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_002978.6\|WP_156768648.1\|540446_540611_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_050707712.1\|531781_532234_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NC_002978.6\|WP_010082295.1\|541288_542167_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|172675
NC_002978.6\|WP_022626293.1\|529826_531785_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NC_002978.6\|WP_080717620.1\|540600_540765_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_081420812.1\|539713_540067_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_002978.6\|WP_010082297.1\|539101_539443_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962673.1\|542150_542726_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241
NC_002978.6\|WP_010082293.1\|542718_542985_-\|DUF2312-domain-containing-protein	unknown	unknown	gnl\|CDD\|237474
NC_002978.6\|WP_010962671.1\|538420_539062_-\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NC_002978.6\|WP_099606204.1\|532314_533147_+\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_002978.6\|WP_010962674.1\|542998_544282_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226911
NC_002978.6\|WP_010962667.1\|528615_529788_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_095866567.1\|540020_540362_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	1.333e-13
NC_002978.6\|WP_010962664.1\|524667_525501_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	2.60644e-22
NC_002978.6\|WP_010962669.1\|534398_537005_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_002978.6\|WP_081420812.1\|539713_540067_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.48008e-06
NC_002978.6\|WP_010962666.1\|526781_527660_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	2.89009e-146
NC_002978.6\|WP_156768648.1\|540446_540611_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.23653e-09
NC_002978.6\|WP_050707712.1\|531781_532234_-\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.000608546
NC_002978.6\|WP_010082295.1\|541288_542167_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|172675	PRK14187, PRK14187, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NC_002978.6\|WP_022626293.1\|529826_531785_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	6.82408e-14
NC_002978.6\|WP_080717620.1\|540600_540765_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.40412e-08
NC_002978.6\|WP_010082163.1\|525903_526791_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.1729e-140
NC_002978.6\|WP_010962673.1\|542150_542726_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	1.17681e-110
NC_002978.6\|WP_010082293.1\|542718_542985_-\|DUF2312-domain-containing-protein	gnl\|CDD\|237474	PRK13694, PRK13694, hypothetical protein; Provisional.	7.09455e-28
NC_002978.6\|WP_010962671.1\|538420_539062_-\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	3.75169e-130
NC_002978.6\|WP_010962667.1\|528615_529788_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NC_002978.6\|WP_010962674.1\|542998_544282_-\|HlyC/CorC-family-transporter	gnl\|CDD\|226911	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism].	8.98061e-150
NC_002978.6\|WP_099606204.1\|532314_533147_+\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.41242e-30

>NC_002978.6|WP_010962669.1|534398_537005_+|preprotein-translocase-subunit-SecA
MSFFFIRKIFGSTNKKIIKSFRKIVQQINALETEMQSLSDEELAGKTEEFKQELKNGKTLNDLLVPAFAVVREASRRFLNMRHFDVQLIGGMVLHNGMISEMKTGEGKTLVATLAAYLNSLEGKGVHVVTVNDYLAKRDTEWMSKLYNSLGVSVAFITNNLTDEERKEAYSADIVYSTNNELAFDYLRDNMKFSQEDMVQRGFHYGIVDEVDSILIDEARTPLIISGPVEENNQIYKHINKIVTKLVDSDYEVDEKGRTVFLTEDGISRVEELLRSYNLIPENSSLYDTDSMIMTHYIDQALRAYKLFTADKDYIVKDGKVVIIDEFTGRMMEGRRYSDGLHQALEAKENLEIQHENQTLASVTFQNYFRMYNKLSGMTGTAATEAEEFRDIYRLNVVKIPTNVPVKRVDIDDEIYGTEKEKFNAVLKFIEECYKRLQPVLVGTVSIENSEKLSALLQSHSLKHSVLNARYHEQEAYIIAQAGVPGSITIATNMAGRGTDIQLGGNAEMIAKVELKKIKNADEREKKYQEIVERVKKDKEIAIKAGGLCVVGTERHESRRIDDQLRGRSGRQGDPGLSKFFLSLEDDLMRIFGSDRMRSFLQKVGLKNNEAIHHPWINKALEKAQKKVEARNYDVRKSLLKFDDVINNQRKVIFKQRNNILGNEINDLLEVYSEVNESVVEGIIQSGYYEDYIENIVKEFHTRYGITLDKEDLAKFLNKQEALNYINDKIQEFFTEKEKYFNSQHTTDLWNTIVKQMMIMTLDHLWREHLSVLESLRQSISLRAMGQKDPLNEFKREAFLMFESMLEKWKELTIHRLAHFKLADNQEIGNRLHSARNSRLPKVSRNDKCPCNSGKKYKHCHGAVTVVS
>NC_002978.6|WP_041580627.1|533126_534095_-|hypothetical-protein
MHGNIYQLKVLMLFLHRGVLYQHSFRLGTEIEEARKFDDLVFECTQGSKKVYRFLQAKHTQDEDNKKIGVGNLLTKDKSGEFGLAKYFVSYLKIKNNQDFADGNLKDFIICTNIDFDLDQSTARNTVKKLRVKTLGPNEEIEILVEVIDTSDVFFKDGGTRYKFSYIHNNMISVVQPAFESAVEEAMEELEEEIKKLQNKPDQNSKRKLERNQTWQREFGRMMNEGRLEDNIKEFFDKLVFAVNQPNEIKLADIIKSELGEQFNDIDRQNVYACFQEKMLDWLKEKGRRFLTHEDGREFFRKMKEEILEVVRKLVNSSIFPL
>NC_002978.6|WP_099606204.1|532314_533147_+|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWSRIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA
>NC_002978.6|WP_050707712.1|531781_532234_-|ATP-binding-protein
MRNPVGSFTGRTEELRELHKLIQKSQGVATVISQLVSISGLGGIGKTELAKKYIEEHSKDYDNNIIWIKAETHETMVQSFLRLARDPLGIPTEDRDIESIVRDIYAFFAKRKVSLFSIMQKNIEVKVKMLVLVNSYRPTFYHLMIINLVF
>NC_002978.6|WP_022626293.1|529826_531785_-|tetratricopeptide-repeat-protein
MITSRNQKWGDIKSLTLGAFTEPESIDFIRKALGIKDGSQENEIKNLAETLQHFPLALQQAVAYIKERDIALKNVGLKFEISDYLKRYKEEAEKLLDFKFPKDSDNSYTKTTFITWRITIDKIKDNPEYGQQAKEILDIIAYIAPDNIPAKMFLGVERNEEKLGDAIQLLKQYSMINPGEEQSSVNIHRLVQQVTRIELEKQGKDKVVKKTFELLEESFPYGSDKLEDYAKKRQLLPHLEAFLSHVDNWLTKNPSEKQTIEKDYLVNLLIWIGDGYFDLDPRRQKKSLERVLPIIKKHYGSDHFQAAITLANLGIAYGALGDPQKEKELLERALPILKTHYSPDHFEVAKLLANLGNAYGYLGNYKKQKELLERALLTFEKHYGTGHPEVARTLISLGTAYRALGDPQEEKELLERALPIFKEYYGYDHFEVAKLLANLGIAYGALGDPQKEKELLEQALTIKEKYYNSDHFEVAITLTNLGISHVDLGDYKKQKELLERALAIKKKHYRPDHFEVARTLVNLGNSYRVLGNPQKAKELLEQALAIRKKHYGLDHFEVVKLLATLGIVYGTFGDHQKAKELFERALPIFEKHYGSGHVQVAKLLANLGIAYGALGDHKKQEELLEQALPIFEKHYGPDHPEVAKLLAELDDI
>NC_002978.6|WP_010962667.1|528615_529788_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSKIIEIRAPKTLGGESVTEGIVKIKKGIGEAVKVDDLIFEIETDKTALELTAEASGQITEFLIKEDDVISPDQLLAKLSMGEVKEEARKEDKSESAAKKDAPSARKIMEENAISAESVKGTGMGGRITKADVIGHMNKAEQPAIKQYELPKSVVNGEQREERVKMSKIRQVIAARLKASQNTAAILTTFNEIDMKNVMDLRAKYKDAFEKKYGIKLGFMSFFIKAAVQALKEIAEINAEISGDEIIYKHYYDVGVAVGTDKGLVVPVIRGADQMSFAEIELTLVALGKKAREGKLQVSEMEGATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRPVAVGNAVEIRPMMYIALSYDHRIVDGKGAVTFLVKIKNYIEDPNRLVLEV
>NC_002978.6|WP_010962666.1|526781_527660_-|hydroxymethylbilane-synthase
MLVKIGTRGSKLAVAQALEAKQKLLDSFPNLSIEIVKIKTSGDKYANANLAEIGGKGLFIKEIETELLENNIDMAVHSLKDMPAFFSGGLTIPCVLERLSSCDAFISHKHNSLESLPQQATIATSSIRRKVQLLNVRPDLNIVPLRGNVTTRLQNQSFDGIILAEAGLIRLEKHHLITEVLPPKVMLSAVGQGAVCIQCRRNDVKIIDLLEKINNNMSFIGVKSERSFMKTVNGSCFTPLAALAEYVSENMLHLRCMLASGKNIYFTERTSFIEDAEKMGMDAGLELKSKCL
>NC_002978.6|WP_010082163.1|525903_526791_-|UDP-N-acetylmuramate-dehydrogenase
MLISLPKVRGIYRYDVLMSKATWLNVGGRADVLFKPCDIEDLTYLIKNTELPVSVIGATSNIIVRDSGIRGITVKLGKEFAYIKSKGNNSIVAGGAVLLSNLAHFAGNQQISGLEFLVGIPGTVGGGIEMNAGAYGSDIASVVQSIKAVNLEDGNLYEFSSEEMGYFYRGHSLKGNWIFVEAEFKGVNSEYELILQRLKEVIERKNKSQPIRGKTAGCIFKNPKNYRAWELIDKSGCLRLNIGGARISKKHCNFLLNYDNATASDLENLGNKVKDAVKDKFNVELEWEIRVLGSY
>NC_002978.6|WP_010962665.1|525615_525807_-|hypothetical-protein
MVNLVELCKNLERKIAKLYQFSLLVNQISDIVELFNCGVRKKGNSMAFFLLLSIRLLCSGNWY
>NC_002978.6|WP_010962664.1|524667_525501_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVREKKDLDKGLKRSVGKPACCVSKGGSSSNTTSLPNQVAKTKGFEKRAQLYAAKAYSRQADKSGKYVDLKKIFFIAISNCTLFPDKLDYISSHTIRDEKTNEHDLKDFQFIFIELPKFPKSREEQLESVVDRWLFFFKYADETTDEDLRKIAEKSPIIKLAYDELDKFHWNEKDLITYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEGKIEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGY
>NC_002978.6|WP_010962671.1|538420_539062_-|fructose-6-phosphate-aldolase
MEIFLDSVDLNEIKGLKEFIDGITTNPSLIAKSGRKDKYEDLVREICSIIKGPVSVEVVADSHEEMITEGLNLAKIADNVVIKLPLTHEGLISCKKLWTEHKIPVNITLCFSPGQALLAAKVGACFISPFVGRLDDISYDGLSLIEDICTIYSNYGFDTKVLVASVRSPAHVIEAARLGADSITVPAKVLRQLVNHPLTDQGLAIFEKDWGVK
>NC_002978.6|WP_010082297.1|539101_539443_-|hypothetical-protein
MNLITNSIKGFYSSVKSDLDWQAKRSLIRTLVKEVNIDLDKVDVVFKIKELENPAQNGQNQKMVHCLRGLGTGMTSFFLVQITLMSQYLYSCVIGCLMFTTQKVHKVVSQAVG
>NC_002978.6|WP_081420812.1|539713_540067_+|transposase
MVREYTAEFKLEAVKLANEQRKVGQPVAKVARDLGIRDSVLGKWMKKYNEKKSAANAFPGRGNMAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFIKEHSKHYKVQELCRVFC
>NC_002978.6|WP_095866567.1|540020_540362_+|IS3-family-transposase
MVNTIKCRNYVGFSASGYYKWTTRKISSRESANKELLADIQKIYQASKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNGIQAILRRKFKIKKQQTDSSSQYIRPKLYCRSTK
>NC_002978.6|WP_156768648.1|540446_540611_+|hypothetical-protein
MSSSINKQLVMDSLLMAVNKRKPAKNLLLHSDQGSQYTSQGYQYLLSIKNIDEL
>NC_002978.6|WP_080717620.1|540600_540765_+|IS3-family-transposase
MSYKGCCYDNSVVESFFSSLKRELPIDTSRHSKQHIKTAIFEYIEIFYNKQRHY
>NC_002978.6|WP_010082295.1|541288_542167_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MTIIIDGKKIANDLCERLSQKIDILKREYNIFPCLKVILIGSNPASQVYVRNKQKKAESIGISSETIVLPNNILEDELIEKINELNEDPSVHGILVQLPLPNHISASRVINTVSVEKDVDGFHDENVGKLVKGEKNCLIPCTPKGSLHLIKSIEENLSGKNAVVIGRSNIVGKPMFYLLLQENCTVTILHSQSKDLAEYCSKADIVVAAVGKPNFVQADWIKKGAIVIDVGINSVNVGKLVGDVDFEGIKGKAKAMTPVPGGVGPMTIAFLMMNTVIAACLQKGVDASDFIS
>NC_002978.6|WP_010962673.1|542150_542726_-|UbiX-family-flavin-prenyltransferase
MNSRIVIGISGASGSIYGVRILEALKDVDYETHLVISRAGKVTLAHEIKEKLEDITSLADFYYSEEKIGEKIASGSFKTSGMIVAPCSMKTMSEIASGVTSNLLTRAADVMLKERRKLVLMVRESPLHLGHLQNMLKLTEMGAIIAPPVPAFYIKPKSLDDIINHSVGKVLDLFDIKLPDFKEWQGSDNYY
>NC_002978.6|WP_010082293.1|542718_542985_-|DUF2312-domain-containing-protein
MEDTVKITAEELKGYIERIEKLEQEKRDVQDHIRDVYAKAADEGWDIKVMKQIIRLRKMDDDDREEQEILLDTYKRALGMSYEEELSE
>NC_002978.6|WP_010962674.1|542998_544282_-|HlyC/CorC-family-transporter
MDWLLVLVSSAIFVLLVLSFLFSGAEIGLTSISRSRVNKLKLDGNKKARVIDRLLNRKELTIGTVLLGNTIINITCSALFTAIFINLFGNEGILLSTIIMTFCILLFCEVLPKTYAIQNPEKFASFSAYFVLFFVKIFSPLTLGIQFIVNLILKLCGLHKDKEVISAADAMRNMITLHRSEGTMLQQDLDMLSSILDLAETEISQIMTHRRNLFSLDIDRNKEELIREILTSSHSRVPLWQKEPDNIVGVIHVKALINALREKNNKAEEVDITQVMSRPWFIPESTPLSVQLHNFRKNRKHLAFVIDEYGALQGIVTLEDILEEIVGEISDEHDLITENFIKKISDNMYHIEGKSTIRDINRQLYWNLPDEEATTLAGMIVNEIERIPDEGEEFSMYGFRFKILKKDKNIITVVEVQVKIGNISGSN

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Crispr_ID: NC_002978_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_7

854850-854946

Orphan

Consensus_repeat	Method
TGTTAGCGGGATCTAGAGATACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_7

>merge|NC_002978|7|854850-854946|CRISPRCasFinder
TGTTAGCGGGATCTAGAGATACCGTGACGGTATGACGGTTCGCGCGGTGGCATGACCTCGTCATCCCGCTACTTGTTAGCGGGATCTAGAGATACCG

>NC_002978|7|6|854850-854946|CRISPRCasFinder
TGTTAGCGGGATCTAGAGATACCG	TGACGGTATGACGGTTCGCGCGGTGGCATGACCTCGTCATCCCGCTACT
TGTTAGCGGGATCTAGAGATACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_081420800.1\|846625_846979_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_002978.6\|WP_010962900.1\|849391_850012_+\|3'-5'-exonuclease	unknown	unknown	gnl\|CDD\|223426
NC_002978.6\|WP_147155110.1\|868101_868287_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010081866.1\|853484_854222_+\|putative-folate-metabolism-gamma-glutamate-ligase	unknown	unknown	gnl\|CDD\|275005
NC_002978.6\|WP_007548853.1\|857489_857873_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NC_002978.6\|WP_010082338.1\|863270_864296_-\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
NC_002978.6\|WP_010962907.1\|856386_857298_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_002978.6\|WP_050707720.1\|847782_848067_-\|transposase	unknown	unknown	gnl\|CDD\|290455
NC_002978.6\|WP_022626367.1\|850652_851309_+\|CADD-family-putative-folate-metabolism-protein	unknown	unknown	gnl\|CDD\|275114
NC_002978.6\|WP_081420820.1\|846330_846672_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_002978.6\|WP_010962908.1\|857885_858299_+\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NC_002978.6\|WP_156768648.1\|846081_846246_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_010962911.1\|860483_861230_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NC_002978.6\|WP_006280416.1\|862179_863067_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_002978.6\|WP_010962909.1\|858291_858750_+\|molecular-chaperone-Hsc20	unknown	unknown	gnl\|CDD\|179914
NC_002978.6\|WP_022626370.1\|855056_856400_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_002978.6\|WP_010962904.1\|853003_853483_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|238127
NC_002978.6\|WP_080717620.1\|845927_846092_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_002978.6\|WP_010962910.1\|858727_860476_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|273915
NC_002978.6\|WP_010962901.1\|850139_850463_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_081420800.1\|846625_846979_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.41621e-05
NC_002978.6\|WP_010962900.1\|849391_850012_+\|3'-5'-exonuclease	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	2.53e-64
NC_002978.6\|WP_010081866.1\|853484_854222_+\|putative-folate-metabolism-gamma-glutamate-ligase	gnl\|CDD\|275005	TIGR04132, intra_fol_E_lig, putative folate metabolism gamma-glutamate ligase. This protein family is related to CofE, a gamma-glutamyl ligase of coenzyme F420 biosynthesis. However, it occurs in a different gamma-glutamyl ligase context, polyglutamylated tetrahydrofolate biosynthesis-like regions in two widely separated lineages that both occur as intracellular bacteria - Chlamydia and Wolbachia.	8.96163e-154
NC_002978.6\|WP_007548853.1\|857489_857873_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.0436e-93
NC_002978.6\|WP_010082338.1\|863270_864296_-\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.3026e-135
NC_002978.6\|WP_010962907.1\|856386_857298_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.08348e-164
NC_002978.6\|WP_050707720.1\|847782_848067_-\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	4.52793e-05
NC_002978.6\|WP_022626367.1\|850652_851309_+\|CADD-family-putative-folate-metabolism-protein	gnl\|CDD\|275114	TIGR04305, TENA/THI-4_family_protein, putative folate metabolism protein, CADD family. This protein family, related to but outside the family of PqqC proteins involved in PQQ biosynthesis, includes the well-studied Chlamydia protein CADD (Chlamydia protein Associating with Death Domains), which can induce apoptosis in a host cell. Other members of this family occur in Rickettsia and Wolbachia, unrelated in terms of phylogeny (both are alphaproteobacteria) but similar in living intracellularly. Local gene context in these species, although not in Trichodesmium or Nitrosomonas eutropha, suggests a role in folate metabolism, and some species with this protein lack FolE but have other folate synthesis proteins.	1.9357e-134
NC_002978.6\|WP_081420820.1\|846330_846672_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.10952e-13
NC_002978.6\|WP_010962908.1\|857885_858299_+\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.55195e-39
NC_002978.6\|WP_156768648.1\|846081_846246_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.23653e-09
NC_002978.6\|WP_010962911.1\|860483_861230_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	5.884e-43
NC_002978.6\|WP_006280416.1\|862179_863067_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.27576e-159
NC_002978.6\|WP_010962909.1\|858291_858750_+\|molecular-chaperone-Hsc20	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	2.08523e-12
NC_002978.6\|WP_022626370.1\|855056_856400_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_002978.6\|WP_010962904.1\|853003_853483_+\|dihydrofolate-reductase	gnl\|CDD\|238127	cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.	8.17405e-46
NC_002978.6\|WP_080717620.1\|845927_846092_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.40412e-08
NC_002978.6\|WP_010962910.1\|858727_860476_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|273915	TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. [Protein fate, Protein folding and stabilization].	0
NC_002978.6\|WP_010962901.1\|850139_850463_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.7069e-37

>NC_002978.6|WP_010081866.1|853484_854222_+|putative-folate-metabolism-gamma-glutamate-ligase
MHVEAIYTHRIECGEVLEQVLDRYVSELLREEVVLAITSKIISICQKQVVCKTACSKEELIKREADAIVDVDHNSYGIYLTIKDNILIPSAGIDESNGNEMYILYPKDVQKTALSIWNYLKTKHCIKHLGILITDSNITPMRLGVTGVALGWCGFEPFYSYIGKPDLYDQPLQVTQVNLLDALATSAVLVMGEGAEQTPMAIISGAPKIHFLTRPPTTEEEKSVKISMEEDLYSPLLMRARWLKS
>NC_002978.6|WP_010962904.1|853003_853483_+|dihydrofolate-reductase
MIVIGIMAVDPKGVIGINNGLPWHYPSELDHFRQVTEKQVIVMGRKTFETMPQDILGNRIPVVFSRDKLNSCFNRGVKCTIISSMQEFLSIQSNSKVFMIGGAQIAYLFLEYDLISEFIITEIHKPYKGDVYFNLTLLDGWHKTILTKTKDYTICKLTR
>NC_002978.6|WP_022626367.1|850652_851309_+|CADD-family-putative-folate-metabolism-protein
MEFTKSLNNKLDELHLLNHPFYQSWNTGSLSLQALQTYAKEYYHHVAAFPRYISGIHFLCPDLKMRQVLLGNLIEEEQGDENHPELWKRFAEGLGVARSDLRESAQIKETQELIDGYFDIVRSGFAAGLGALYAYERQTPEVSKSKIEGLKKHYSISDERSLQFFTVHMHADEWHSEECANLIEDLDEKEQDKVMQGAQKGARLLWGFLDGMMNASVC
>NC_002978.6|WP_010962901.1|850139_850463_+|thioredoxin
MSDDITPVNDQNFKSEVTDYKGFVLVDFWAEWCGPCKSLMPRIEQLAKDRKGKIKICKFDIDEGTEVPSKYGVQSIPTLIIFQDGKEIARKIGATNDLLSWVDSEIS
>NC_002978.6|WP_010962900.1|849391_850012_+|3'-5'-exonuclease
MGIFLYKDDLPASSIPDDIRSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQLKNDYTAPNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLMGWENVDIFNHQM
>NC_002978.6|WP_050707720.1|847782_848067_-|transposase
MRVSNCHEYSKFLQERGSIFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLQLFTSIKRNLILR
>NC_002978.6|WP_081420800.1|846625_846979_-|transposase
MAREYTAEFKLEAVKLANEQRKAGQTITKIAKDLGIKGGLLGKWIKKHNEKKSAADAFPGRGNMAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFIKEHSNCYKVQELCRIFC
>NC_002978.6|WP_081420820.1|846330_846672_-|IS3-family-transposase
MVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLAAIQKIYQVSKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNGIQAILRRKFKIKKQQTDSSSQYIRPKLYCRSTK
>NC_002978.6|WP_156768648.1|846081_846246_-|hypothetical-protein
MSSSINKQLVMDSLLMAVNKRKPAKNLLLHSDQGSQYTSQGYQYLLSIKNIDEL
>NC_002978.6|WP_080717620.1|845927_846092_-|IS3-family-transposase
MSYKGCCYDNSVVESFFSSLKRELPIDTSRHSKQHIKTAIFEYIEIFYNKQRHY
>NC_002978.6|WP_022626370.1|855056_856400_+|DNA-repair-protein-RadA
MKTVYVCQSCGHSTGRWVGKCIACDNWDTIVEEIAVKTGKRSISAPILIKTLSGSEIITPSRFLTGIEELDRVFGGGIVQGASILIGGEPGIGKSTLLLRIAANVVQLSSFECLYVSGEESLEQVSLRAKRLKINEPKIKLLSTVSLTDVVATIKENKSIKFLVIDSIQTMYDSRITSAPGTVTQVRICAHELTILAKQYGVSLLIVGHITKDGQIAGPKTLEHMVDTVLYFEGENSNQYRILRTIKNRFGPANEIGVFEMSEAGLVPVDNPSSLFLMAHDREVVGSAVFAGIEGSRPILMEVQALIAGTNMATPRRAVVGWDINRLAMIIAVLNARCKMFLHDKEVYLNIAGGLKIQEPSADLAVAASLISSIVNLPLPTSSIICGEVALSGEIRNISHADLRLKEAQKLGFKKAIMPKNGNYSSHDIEIIKLGHVRELREVFNYN
>NC_002978.6|WP_010962907.1|856386_857298_-|signal-recognition-particle-docking-protein-FtsY
MSLFSNLYQGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDRLTSIKFDKEVEYNTITQQLMSEIESILNPAVQPLILNKKPHIIMVCGVNGNGKTTTIGKLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQAIKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQLEAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEALFNCN
>NC_002978.6|WP_007548853.1|857489_857873_+|Fe-S-cluster-assembly-scaffold-IscU
MSYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGRTISDVTQIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHDYQSKQKN
>NC_002978.6|WP_010962908.1|857885_858299_+|iron-sulfur-cluster-assembly-accessory-protein
MGEYQEVGRGETVKKNKKLITITAEAVERIRYLLDQKKHTNLEKPEEAIGIRVLIKQKGCSGLKYDIEYAYDTRPLESVIEENCSDGQKVKVLIDPKSVMFILGSEMDYVEEKFSSGFVFKNPNEKGKCGCGESFHV
>NC_002978.6|WP_010962909.1|858291_858750_+|molecular-chaperone-Hsc20
MSSNYFALFEIEPAFNISFDELEKKYIELSRTDINERQSQNMENINRAYQILKSPLKRAEHLLDFFNVKSQKDHLNSEILSESMEIREYLLDCDDLQFASRMIDEKIKGCIKNLINTFAVKNFDRAATQVLRLKYLYKSFEEMKKNATNSNF
>NC_002978.6|WP_010962910.1|858727_860476_+|Fe-S-protein-assembly-chaperone-HscA
MQPIQISEPNSNEVVFGIDLGTTNSLIAMVNKAGNVEIFKDEQGRELLPSIISCENNTLKTGYDVGSNAIHSIKRLMGKSVKDLNKMGVYFEIDNESEKVIRVKCSEEKYLTPVEISAEILKALYERVKKSKGLEVKKAVITVPAYFDDSARNATKYAAKLAGIEVLRLVNEPTAAALSYSIEKNNNSGIYAVYDLGGGTFDISILKLHQGVFQVLAVGGDTKLGGDDFDHLLSSIVIDKYREKTAKQLNSLLIESRSVKEYLSNHTIGIFEFNVNGKPFECEITREEFEQAISSLVNKTINIVTRTISDIDLKIDDIKGVILVGGATRTPLVQNSLVKLFGNKVLNDVDPDKAVAIGAALQAHDLTSSSKDRNILLDVLPLSLGIETMGGIVEKIIPRNTPLPVSETKEFTTYIDGQTAMKIHVCQGEREMIEDNKSLAQFELKGIPPLPAGSARVEIEFTVNVDGILTVTAREKTTGIEQTVKVNSSFGLSEADVQNMVNQSINSFDEDMKARSLAGAKINGNKLIHLVENNNNLSTDQKLKNLLQNAKNALQVNDLNEINNTIAELENSSLELCELTNR
>NC_002978.6|WP_010962911.1|860483_861230_-|signal-peptidase-I
MEELSKNWVIRTGRFLSSLFFLLLIALSIRSFLFEPFHIPSGSMKSTLLEGDYIFTSKYSYGYSKHSFPFSPNIFSGRIFYTPPKRGDIVVFKPTRNDSIRFVKRVIGTPGDKVQMIEGELYLNDQKVERRQIESFFDYESNRNIPRYIETLLSGKEHEILVDDISNKLSYNTPVYYVPNDQFFVMGDNRNNSLDSRFPEVGFVPMENIIGRVSIVGLSFKLGKVDWLPFNFRLPVALRLNRVLHKVV
>NC_002978.6|WP_006280416.1|862179_863067_-|aspartate-carbamoyltransferase-catalytic-subunit
MNKRRNLLNISDLTVDDVENITKLANQYLKKEVANSHILENKTVINLFFEDSTRTLASFEIAAKSLGANVVTLPIRSSSINKGEDLKDMIKTLNAMNPDYIIIRHKSSGIINTLAKYVNCSLINAGDGSSEHPTQALADYLVISNHKKQIKDLKVVICGDILHSRVARSNIRLLKMFGAEINLVAPPTLICKHFPEVDSVHYSLIEGIKDADVIMLLRLQKERMNNSSSEKEYFYLYGLDSQKLSYAKPDAIVMHPGPINRGIEISSDVADCVILQQVEFGLAIRKAVLHYYRPC
>NC_002978.6|WP_010082338.1|863270_864296_-|Fe(3+)-ABC-transporter-substrate-binding-protein
MKKAFIFTSLIAIILIVITYLYRNDGTNDSQVVNVYSSRKEELVRTLFDEFTKNTGIKVRYIIDDYSQLLSRMENGGEADLFLTADAINLILAKKRGLLSQVDSEVLKSVIPARFRDSEDYWFGLTKRARILVYNKESVDPKDLSTYEDLANEKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPSGGDTDQIYAVAAGEGDVAIVNSYYFARILSSENKKNVADKLGAFFPNRNDHGVMVNISGAAVTKNAKNRENAIVLLEFLVSKQAQELYAKKNQEYPIIEGVETSDILKSWGNYSQSDLPLSELEKHLFEAVMIADECKWK
>NC_002978.6|WP_147155110.1|868101_868287_-|hypothetical-protein
MNFVSNCQFFSLERCNKAHWDPVSPCDGVMKVADTGFHPRRCHSLLLPTNINGLKSKILQY

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Crispr_ID: NC_002978_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_8

950540-950650

Orphan

Consensus_repeat	Method
GAGATACCGCGGCGGTATGAAGGTTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_8

>merge|NC_002978|8|950540-950650|CRISPRCasFinder
GAGATACCGCGGCGGTATGAAGGTTCGCGGTGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGCGG

>NC_002978|8|7|950540-950650|CRISPRCasFinder
GAGATACCGCGGCGGTATGAAGGTTCGCGG	TGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTA
GAGATACCGCGGCGGTATGACGGTTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_010962977.1\|958611_959391_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NC_002978.6\|WP_010962973.1\|953983_955231_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_002978.6\|WP_010962965.1\|943831_944788_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_002978.6\|WP_010082311.1\|943549_943720_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962968.1\|946921_947704_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NC_002978.6\|WP_010962976.1\|957904_958612_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NC_002978.6\|WP_010962962.1\|941972_942989_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NC_002978.6\|WP_006279859.1\|947696_948398_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NC_002978.6\|WP_010962970.1\|949288_950452_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NC_002978.6\|WP_173862902.1\|951423_951567_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962969.1\|948718_949216_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962972.1\|953148_953949_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_002978.6\|WP_010962975.1\|957153_957651_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962967.1\|945828_946011_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_002978.6\|WP_010962971.1\|950731_951175_+\|PD-(D/E)XK-nuclease-family-transposase	unknown	unknown	gnl\|CDD\|372314
NC_002978.6\|WP_010962974.1\|955517_956936_-\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NC_002978.6\|WP_010082336.1\|940142_941669_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NC_002978.6\|WP_153296798.1\|955321_955462_-\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010962966.1\|944780_945818_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_002978.6\|WP_010962767.1\|951604_953152_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_010962977.1\|958611_959391_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.84567e-126
NC_002978.6\|WP_010962973.1\|953983_955231_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_002978.6\|WP_010962965.1\|943831_944788_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.57525e-180
NC_002978.6\|WP_010962767.1\|951604_953152_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.97385e-139
NC_002978.6\|WP_010962976.1\|957904_958612_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	1.27455e-46
NC_002978.6\|WP_010962962.1\|941972_942989_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	3.91449e-67
NC_002978.6\|WP_006279859.1\|947696_948398_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.57469e-102
NC_002978.6\|WP_010962970.1\|949288_950452_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NC_002978.6\|WP_010962972.1\|953148_953949_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	8.14209e-25
NC_002978.6\|WP_010962967.1\|945828_946011_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	2.18835e-21
NC_002978.6\|WP_010962971.1\|950731_951175_+\|PD-(D/E)XK-nuclease-family-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	3.98008e-17
NC_002978.6\|WP_010962974.1\|955517_956936_-\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NC_002978.6\|WP_010082336.1\|940142_941669_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	4.68335e-153
NC_002978.6\|WP_010962966.1\|944780_945818_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	8.00386e-157
NC_002978.6\|WP_010962968.1\|946921_947704_+\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	2.83366e-73

>NC_002978.6|WP_010962970.1|949288_950452_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKVSVLGSTGSVGKKTVDLLSKRKEEYQVEALSAHSNFALLAHQAKLLNAKYVAISDERLYKDLKESLLGTDVKIAIGATNIATIPVDLSVVAIVGIAGLGPVMEVIESGTKVIALANKESIVCGGKLLLKKAKEKNVQIIPIDSEHNAIFQILQNDDKCVEKIILTASGGPFLNYSLEQLRNVMVDKALSHPTWNMGKKISVDSATMMNKALEIIEAHNLFNISPDKIEAIVHPESIVHGIVTYKDGFNFAVLAETDMAIPISYALSGPERSALNRKLDLTKQGKLTFQEPDHKRFPALKLSMAVLNSSAPQTNSIVLNAANEIAVNEFLKSRIGFLKIVEVVESTMESFGSYTDINSLSDIINIDYESRIIAHKIVESKVVAYS
>NC_002978.6|WP_010962969.1|948718_949216_+|hypothetical-protein
MSEAQGPNIAEWQAQQQHQEAAGEKSGFGLGHSDSVSTVVDGMKWLFNFHEGAIAAYSNVFEGLVSGSSLVTLFGKSGNMFGIKLLEGLAEYFSGGGGEDMPSEEMDMAHGDDGHHSDDYPHANNEIAHNADGLQDMHDAGDHHDQSFSPGPSPSVGDDHGYELG
>NC_002978.6|WP_006279859.1|947696_948398_+|ATP-binding-cassette-domain-containing-protein
MRNPIISILNLSLSFDDRTVLKDLNFDILKGESLVILGGSGSGKSVLTKTIIGLLAPDSGSVKINSKSKNKFGVLFQNSALFDYVTVWENISFNYKKRFNISKKEAKQLAIEKLNDVGLEESIADMFPIELSGGMKKRVALARAIAHNPEIIILDEPTSGLDPIMSDIVNEIIIKLSRDLNPTIITITHDIHSAFKIADKIAVLYEGEIISHGTVQEIQNTNNEYIKKFIHYI
>NC_002978.6|WP_010962968.1|946921_947704_+|ABC-transporter-permease
MSFFDINSVRIIGRYFINFLLRLGSAFIFFIQSLYHCLVPPYYFSNIARQIIEIGFFSLPIVGLTGVFIGAAIVLQSSLSDPSINQEQIIPKLVTITIIKELGPVLISLIMVGKVGSSVAAEIGTMRITEQIDALTTLNINPFKYLIAPRILASIIVFPILTVCADLIGIFGGCITAVFEFNHNLNIYIKHTAQFFNTYDFITGLIKATAFGAIISVSSCYYGYHCKEGARGVGVATTSTVVLSSILIILANYMITLIHA
>NC_002978.6|WP_010962967.1|945828_946011_-|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHHAIEPKNVVVCSTTGEFMLPHNVAVDGSYKGKRVFIKQQAE
>NC_002978.6|WP_010962966.1|944780_945818_-|phosphate-acyltransferase-PlsX
MLSTVNNNIVIALDAMGGDFAPLSVIHGAGFFLDNLVDPGIKVFFHIYGDKEEVSPLLLKYKKVSNNSEFTHCSDNVLANDKPSFALRHRKDSSMKAAIVAVKEGKAFGVVSSGNTGALMAISRFILGTLPNIYRPAIASICPTKTKSLALLDLGANVDCNADSLFQFALMGSIFAKIALKIDNPEVALLNIGTEEVKGNDSVRGAFELLKNAPGINFKGYIEASEFLEGNIDVIVADGFVGNVMLKTAEATASTFINLIKQEVFNSWIAKMLVGILLKSKLNKALTRFNPKIRSGAMFLGLNGIIIKSHGNSDAISFAHAIKFAVNAISENLNQKIINGVSHIE
>NC_002978.6|WP_010962965.1|943831_944788_-|ketoacyl-ACP-synthase-III
MNKSFILSTGSYLPRKMLSNNEIASIVETSDEWIRQRTGIVQRHIADEGELTSDLAVNAAKSAIEKAKISVDEIDLIIVATTTPDKTFPSCATIVQSKLKCKNAFAFDVQAACSGFIYAVTVADSLIKSNNRIKYALVIGAEIMSRIVDWEDRSTCVLFGDGAGAVVMKSEMGRSGIISTNLYSDGNVDILCTNGGISSTGDSGKICMNGREVFKHAVDKLTASVEETLKCNNLKITDIDWLIPHQANIRIIEAVVKKLDFPIEKVINTVDKHANTSAASIPLALDYAIQESKIKSGNLVLLISIGAGLTWGSVLLHY
>NC_002978.6|WP_010082311.1|943549_943720_-|hypothetical-protein
MKVADTGFHPRGCHLSALTTWIQESLLVSKQTSTESGYNIFDEIIWKTRSQCQALG
>NC_002978.6|WP_010962962.1|941972_942989_+|NAD(P)/FAD-dependent-oxidoreductase
MKTDIVIIGAGPVGIFTAFQAGMLDMRCHIIDVLDQAGGQCTALYPEKPIYDIPGYPVITAQKLIEQLMEQSSPFKPVYHLSQKVEKISNNEGESFTVITNIGTEVKCKAVIVAAGNGMFKPNRPPLSGILEYENKSVFYSVNKISDFQDKTIVIAGGGDSAADWTVELSKVAKKIYVIHRRKEFRCTPETRNKLESLEIDGKIELVVPYQLHELAGGNGQLSAVIVKNIASKEEKEISADFLLPFFGLSMNLGPINNWGIQLEHSRIVVDPATLKTSRDRIYAIGDIAIYSGKLKLILNGFAESAMACYDIYKVIHNSPVNFQYSTSKGIHGKEKLP
>NC_002978.6|WP_010082336.1|940142_941669_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQLIDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKVFVMAKPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVQLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEADLRIELFPFEQRHDVNYQATGNIPSVVDTQLCKYCNQQTVSSQCLTLGSRYKNTCKLCNRQWILETCAENNVHSWIPVSATCMTSDQNDTIYVLSKADDVINNHNIKINGIDLLPISILKEIGTNKLISLIKEKAEEKFGHDRDTPVITRQRHRNHMKKALEHLQRFNIDNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK
>NC_002978.6|WP_010962971.1|950731_951175_+|PD-(D/E)XK-nuclease-family-transposase
MALSKFLDPKLDLTFKKIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMVRPESLRSYCLKGEEFIQKETERILKLIEPDVLPSESTHQCELGNQLVPSDADNEPPLDKEDAQS
>NC_002978.6|WP_173862902.1|951423_951567_+|hypothetical-protein
MAGNPQGMLMDVQVKDNGESECHFVTKWIEFVTLIRVKTSRLPFGPS
>NC_002978.6|WP_010962767.1|951604_953152_+|group-II-intron-reverse-transcriptase/maturase
MITSTTVSAPTNNSEAWNQLPWKKCQKVVMRLQRRIVKAVQQGRWGKVKTLQHLLTRSFSGKALAVKRVTENQGKNTAGVDRQIWSTCNTKFQGIKLLKQRGYKPSPLKRIYISKSNGKRRPLGIPTIKDRAMQALYLFALEPIAETISDRHSYGFRPKRSCADATVACHLLLASRNQLQWILKGDIKWCFDNINHEWLMKHIPMEKKILHSWLKAGFLESKTLYSTTAGTPQGSIISPILANLALNGLEKSLESQFGKLGSKRRSKIRSGVNVIRYADDFIISGITREVLENEVKPLVSSFLQERGLILSEEKTKITSITTGFDFLGCNVRRYNKKLIIKPSKESIKKLLNKARTLIKANIANTQAVLIKLLNSLLRGWGNYYSHVCAKRAFNKIDHEIMCALWKWAKKRHPRKGLRWIKNRYFKVMKQRQWVFAAPICKNKPKEIRYLRLLRLIDIPIRRHVKIRADANPLDLKWKKYFDERVKQTKMLASSFSREGSLLLVSPLRMMFSEES
>NC_002978.6|WP_010962972.1|953148_953949_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVREKKDLDKGLKRSVGKPACCVSKGGSSSNTTSLPNQLTRDKGFEKRAQLYAAKAYSRQADKSGKYIDLKKVFFIAISNCNLFPDKLDYISSHTIRDEKTNEHDLKDFQFVFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGTE
>NC_002978.6|WP_010962973.1|953983_955231_-|IscS-subfamily-cysteine-desulfurase
MNVESKKIHDAKIKLPIFLDYQSTTKVDPRVLEVMIPYFGEFSNAHSRSHSFGWTAEEAVEKARKHIADLVNADSKEIIFTSGATESNNTAIKGVAHFYKNKGNHIITVCTEHKCVLDSCRHLENEGFKVTYLPVKQNGIIDLSKLEEAITDKTILISVMMVNNEIGVIQPVKEIGKICRKHNIFFHTDAAQSFGKVPIDVNEMCIDLMSLSSHKIYGPMGIGALYVRRKNPRVRLIPLISGGGQERGMRSGTVPTPLAVGFGEAARIAREEMKKETTGVEELRDILYNKIKEAFPDIVLNGDYENRIPGNLNLSFPYVEGESLIMAIKDLAVSSGSACTSASLEPSYVVRSLNNGHDLEHSSIRFGLGRFTTREEVLYAADLVAKNVGRLREMSPLWEMVQEGVDLNTVKWDSH
>NC_002978.6|WP_153296798.1|955321_955462_-|hypothetical-protein
MEAIATNRVSSQCLGTAFVFEAKLAITFNTLLSQINVRTVMCQLLG
>NC_002978.6|WP_010962974.1|955517_956936_-|metalloprotease-TldD
MPNLDQIFFAQNNVNINNVYKIVNNALSNSDGGELFLEFCQSESLVFEDNILKHMDLNTRRGFGLRSFCEDSTSFVCSSEISEKEISNAASMVKSSVSLNKTNSINLNEETKSLYSRINPINEMDLNSKIKLLNEVNEYVRSKNNCVKQVKITLSGEWQVVQIIKGDHRLSDIRPLVRFNVLVIVEKDGRTERGSAGHGGRDSYSKFISEKKWKEVANQALEQALVNLEAIPTPAGEMTVVLGPGWPGILLHEAVGHGLEGDFNRKKVSAFSNSVGKQVAASDITVVDDGTLPNLRGSISVDDEGTPPSYNILIEDGILKGYMQDHMNAKLMGVSPTGNGRRESYKEVIMPRMTNTYMLPGKYTPKEIISSVKKGLYAVNFGGGQVDITSGKFVFSSSEAYLIENGKITQPVKGATLIGDGPTVLKKVSMVGNDLKLDPGVGTCSKDGQNVPVGVGQPTLKVDAITVGGTEI
>NC_002978.6|WP_010962975.1|957153_957651_+|hypothetical-protein
MYGEKDKLAYRKKVRTYSKRLVTTLSTISFIGYIAALVLNIPVLSLYFSIAGTIFSALSFALNIWSLNDHSRQQNLNKKSGIKNTPGQKKLTKIYLDIASSASFLIGGIASMSLFESSVIYFVSTPFFILGCVIMAANIVQTMISEPQTKNVLENLSSNTARVQA
>NC_002978.6|WP_010962976.1|957904_958612_+|uroporphyrinogen-III-synthase
MKSILLTRPLLDSFNTRNILRKYGYKVYIEPVFTIKYLNPDISAHEFDVVISTSKNSVKAFSQICKVDDFPIITVGNSTMQAAKNLGFSDIISADSNVDGLISFIKAHYSSAIKFLYIRGQEVSCDLKKRLSEEDFNVREVVLYKTIIKRSLTNRCKNLLLDGKIGSVAFFSSQTARVFCSLVLKSGLSHVMNNTVAYTMSKNIADSLKLIKWKKIITSRLPTGESLIDIINKDC
>NC_002978.6|WP_010962977.1|958611_959391_+|exodeoxyribonuclease-III
MLKIATWNVNSIRKRVNQLCSFIVDSQIDIVLLQEIKCTEEQFPYAEIEKLGYEYAIYGQVARNGVCVLSKYPILEKFKIDIVESHQEARYIECVIKYTNSKIRVGSVYVPNGQSPDSHAFEYKLKFFDNLYERMSTLLKNEELTIIAGDYNIAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKDAFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSDHTPVVCAIE

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Crispr_ID: NC_002978_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002978_9

1247934-1248012

Orphan

Consensus_repeat	Method
GTCATCCCGCTGCTTGTTAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002978_9

>merge|NC_002978|9|1247934-1248012|CRISPRCasFinder
GTCATCCCGCTGCTTGTTAGCGGCTAAGAGATACCGCGGCATGACGTAGGATTGTTGTCATCCCGCTGCTTGTTAGCGG

>NC_002978|9|8|1247934-1248012|CRISPRCasFinder
GTCATCCCGCTGCTTGTTAGCGG	CTAAGAGATACCGCGGCATGACGTAGGATTGTT
GTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_002978.6\|WP_010963177.1\|1257640_1258498_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237228
NC_002978.6\|WP_010963168.1\|1245502_1247329_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_002978.6\|WP_010963173.1\|1252251_1252848_-\|TIGR02217-family-protein	unknown	unknown	gnl\|CDD\|274037
NC_002978.6\|WP_010081826.1\|1254053_1254206_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_010963174.1\|1253038_1253797_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239321
NC_002978.6\|WP_015589497.1\|1242712_1243240_-\|DUF4040-domain-containing-protein	unknown	unknown	gnl\|CDD\|183561
NC_002978.6\|WP_010963176.1\|1255383_1256862_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_002978.6\|WP_010963178.1\|1258909_1261234_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NC_002978.6\|WP_006279706.1\|1241992_1242304_-\|cation:proton-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236004
NC_002978.6\|WP_010963172.1\|1251332_1252121_+\|hypothetical-protein	unknown	unknown	unknown
NC_002978.6\|WP_041580664.1\|1239928_1241854_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NC_002978.6\|WP_006279705.1\|1242300_1242720_-\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183563
NC_002978.6\|WP_010963175.1\|1254216_1255296_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_002978.6\|WP_010963171.1\|1248433_1251088_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NC_002978.6\|WP_022626177.1\|1245003_1245495_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NC_002978.6\|WP_007548527.1\|1243535_1243781_-\|Multiple-resistance-and-pH-regulation-protein-F-(MrpF-/-PhaF)-superfamily	unknown	unknown	gnl\|CDD\|183618
NC_002978.6\|WP_006279703.1\|1243241_1243529_-\|monovalent-cation/H(+)-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|183669
NC_002978.6\|WP_010081926.1\|1244277_1244574_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372700
NC_002978.6\|WP_006279769.1\|1258501_1258900_-\|ribosome-binding-factor-A	unknown	unknown	gnl\|CDD\|376719
NC_002978.6\|WP_007548528.1\|1243809_1244217_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744

Protein	Function_ID	Function_description	E-value
NC_002978.6\|WP_010963177.1\|1257640_1258498_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237228	PRK12847, ubiA, 4-hydroxybenzoate octaprenyltransferase.	1.59924e-140
NC_002978.6\|WP_010963168.1\|1245502_1247329_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_002978.6\|WP_010963173.1\|1252251_1252848_-\|TIGR02217-family-protein	gnl\|CDD\|274037	TIGR02217, conserved_hypothetical_protein, TIGR02217 family protein. This model represents a family of conserved hypothetical proteins. It is usually (but not always) found in apparent phage-derived regions of bacterial chromosomes. [Mobile and extrachromosomal element functions, Prophage functions].	5.93885e-108
NC_002978.6\|WP_010963174.1\|1253038_1253797_-\|DsbA-family-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	4.51941e-60
NC_002978.6\|WP_015589497.1\|1242712_1243240_-\|DUF4040-domain-containing-protein	gnl\|CDD\|183561	PRK12504, PRK12504, DUF4040 domain-containing protein.	1.0694e-79
NC_002978.6\|WP_010963176.1\|1255383_1256862_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NC_002978.6\|WP_010963178.1\|1258909_1261234_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NC_002978.6\|WP_006279706.1\|1241992_1242304_-\|cation:proton-antiporter-subunit-C	gnl\|CDD\|236004	PRK07375, PRK07375, Na+/H+ antiporter subunit C.	1.73227e-32
NC_002978.6\|WP_041580664.1\|1239928_1241854_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NC_002978.6\|WP_006279705.1\|1242300_1242720_-\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183563	PRK12508, PRK12508, Na(+)/H(+) antiporter subunit B.	5.30173e-75
NC_002978.6\|WP_010963175.1\|1254216_1255296_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	6.33433e-34
NC_002978.6\|WP_010963171.1\|1248433_1251088_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NC_002978.6\|WP_022626177.1\|1245003_1245495_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	1.54875e-82
NC_002978.6\|WP_007548527.1\|1243535_1243781_-\|Multiple-resistance-and-pH-regulation-protein-F-(MrpF-/-PhaF)-superfamily	gnl\|CDD\|183618	PRK12603, PRK12603, putative monovalent cation/H+ antiporter subunit F; Reviewed.	7.97434e-10
NC_002978.6\|WP_006279703.1\|1243241_1243529_-\|monovalent-cation/H(+)-antiporter-subunit-G	gnl\|CDD\|183669	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.39054e-46
NC_002978.6\|WP_010081926.1\|1244277_1244574_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	5.06757e-18
NC_002978.6\|WP_006279769.1\|1258501_1258900_-\|ribosome-binding-factor-A	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.03994e-13
NC_002978.6\|WP_007548528.1\|1243809_1244217_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	9.25428e-16

>NC_002978.6|WP_010963168.1|1245502_1247329_+|DNA-mismatch-repair-endonuclease-MutL
MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSLEIEIKIESGGRNLIIVTDDGNGVEKNDLELAFMRHATSKLSDNELIEIKHLGFRGEALPSIAAVSRIKLSSKAREANEAWSISYEGGEKIGEQTPYSLSQGTHIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMINYHIGFTLTSGNKKLLKYAKQTSLFHRLCEVEEEFQGNSLEINEEEDGIKLTGHICKPTVNRGKSTQIYTFVNGRPIKDNLLIGAVRYAYHDFIPSDRYPFAALHLEIPYDQVDVNVHPNKSEVRFQNKKLIYEIMTRGLIKALSRRIGTFPAHDQKMDSTLPDPFDKPNVQKEFYEKRPSPFKNQLIKEFASPNEKAKGLSEQSKSFDYTGIQKFPSQAETMVLEKKVLEQVDLIESHPLGFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLKQKSSVKRQKLLLPETVEIKNQAGMEMIEIYKDKLFEMGFDIEIKPENKVIVKEIPAILGAIDVKEMLINIVDRLTEIEDTLPVEDKVNKILATIACYGSIRAGRKMRFEEMNVLLRQMEKTPYSGQCNHGRPTYIEMKLSDIEKLFERR
>NC_002978.6|WP_022626177.1|1245003_1245495_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MTKIKKDVAVIMGSESDYTTMVHTVDMLKALEVSHDIFIISAHRTPERLFNFAKSAQEEGFKVIIAGAGGAAHLPGMVASLTCLPVIGVPVHSKQLNGLDSLLSIVQMPKGVPVATMSIGGNGAHNAAITAVSILSISNSEIAGRLKKWREKQTKEVKEKPIS
>NC_002978.6|WP_010081926.1|1244277_1244574_-|XRE-family-transcriptional-regulator
MEIISLNNLDSAGIKTKLLYIINKIIEKNAWTQAFAAEKLGIDQPKVSQIKNGKIDGFSLERLLGFLKKLDHEITITMTESQEIKSEAEKVKHEVESQ
>NC_002978.6|WP_007548528.1|1243809_1244217_-|DNA-directed-RNA-polymerase-subunit-omega
MAESIVEKCIERVSNRFKLVLLASQRTHDLNTGASNPIQAAKFKGHKNTIVSLHEIAGKQVDTHELFSLLVGRCKEYMKGNMNNVYSSNTSKLANLLNFSDNTDLDASQESQDYEVDGEIDDEINDQDGDEEVSV
>NC_002978.6|WP_007548527.1|1243535_1243781_-|Multiple-resistance-and-pH-regulation-protein-F-(MrpF-/-PhaF)-superfamily
MICIAIYTLLFCMSVMLCCIVSKSNDVYNKVLAFNNFSTQVVVLITAISIILNNFFLIDIALLYASVSFISTIALMRLMLF
>NC_002978.6|WP_006279703.1|1243241_1243529_-|monovalent-cation/H(+)-antiporter-subunit-G
MIGSIFIFLGICLIIISNIGVIRFPDFYTRLHAAGITDSSGATLLLIGFALQNGFSINTVKIVLLIFIIWVANSTNSYILARTHYKVKKKTVKEG
>NC_002978.6|WP_015589497.1|1242712_1243240_-|DUF4040-domain-containing-protein
MLEILNVVLLLLLLTVTVFIVFSRHLVVSAVLMCVFSSLIALIYLIMNAPDVAITEASVGAGLSTVFTFAALSLIKNHKVNLSHNPITLFFMLFLAVCLSYFMIQLPDFGSHNAPIHLHVAPYYVENTEKATGIPNIVTAILASFRGYDTFGETIVVFTAALCITLILKEEKEND
>NC_002978.6|WP_006279705.1|1242300_1242720_-|Na(+)/H(+)-antiporter-subunit-B
MIKDPILNAVTFLMIPFIILFGLYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSVIRLTNVLGILIYGGTGVATTLLGQNFLSYDILLTNNRTGQKLGIFLVELGVAFTVCSSMLIIYINFARRKKQ
>NC_002978.6|WP_006279706.1|1241992_1242304_-|cation:proton-antiporter-subunit-C
MTLYNYTIIIVLMVLGLYIIINDKNLIKKMIGVSVFQASVLLFYISLGYIKSSLPPILVSNFYSYSNPIPHVLMLTAIVVGIATFSVGLSIAVKMEEKYGTID
>NC_002978.6|WP_041580664.1|1239928_1241854_-|RNA-polymerase-sigma-factor-RpoD
MSTINDAEDKKKIIKDLVTKSIKKGGFITFDDINDKLSDENFSSDFIDDAISLLQDSGINVLESSEDEEDIPSNSDDSKLDDDDTSPNVTATLVQNDDPVRIYLQDMSSVKLLSRADEIEIAKKIESGKHNMLRAIIETSVTLKVIKVWRDDLSNGALLLREIIDLDAMYNSDFNVVPKEESEESEESAEDVEDSEDVSEDAEYCSDDEKDGNNEDISSVNLNVSILEMESDLLPKVIVALDEIITLTNEALILRKNSKNFSNELENLYNQIWSIALQIKLSDAAVARITQELYKINRSITLEEANLIAEARKYDIDRESFYKVYDDVLLKHELKKISLLKINENQSSFTGELKNKFLRFIDDKSEHIASTLNGIKQHIQEDNVQEFKELIKRIQKHEREVSEAKQEMIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF
>NC_002978.6|WP_010963171.1|1248433_1251088_+|2-oxoglutarate-dehydrogenase-E1-component
MSSSSCLYGDNAEFVEEMYSRYLQGDKSIGEDWYRIFSSNLEVNKAETCGAQHVTKVDDSVSSLANFFRSYGHFFADLNPLLPNVNKEVDYQKYSNLYPASDAGIYRDIYCKNIGFEFMHISSYEERMWLQEKIENQTYTLSSQDKKEILRHLIESEMFEQFLHMKFPGYKRFSIEGGESAIVAIEKIISDSTVFGIEEIVLGMAHRGRLNVLTKVMGKEYAAMLSEFQGNLAYPSGLEVSGDVKYHLGYSSDRALSGGKKIHLSLCPNPSHLEAVNPVLAGRIRAKQNIRSVLGISIHGDAAFIGQGVVAETLTLSNIEGYKVDGIVHIVINNQVGFTANPCCARSSFYCTDIAKSIEAPVFHVNGDNPEAVSFATSLAMEYRQKFKKDVVIDIMCYRKYGHNEGDEPNFTQPLMYKAISKHKTPGTLYEEKLTAEKVLDGDEVNKLRSEFRAKLDKSLAESAAYTPKKADWFGGVWSKLRRAKLNDLSEYYTDSGVPPDELKKLGVRINSNIPSNFNINNKVRKILDGRIDSINFGSNIDWATAESLAFASLLTERIGVRLSGQDSGRGTFSHRHSRLVDQVTEEAFIPLNNINEKQAHFEVIDSALSEYAVMGFEYGYSLDSPYSLVLWEGQFGDFANGAQIMIDQFIASAETKWLRSSGLVLLLPHGYEGQGPEHSSARIERFLQLCAEDNMQVVNCSTPANYFHVLRRQMHRDFRKPLVVFTPKSLLRHKRAVSNLSDFEGKFLTVIPECRTGLVSNDKIRKVVICSGKVYYDICEAQKINDIAVIRLEQFYPFPADKLSNELEKYKNAEIIWCQEEPKNMGGWFFVNPLIEEVLSNLDIQAKRPKCIARPAAASPACGYVSVHTQQQEEILKQVMQGI
>NC_002978.6|WP_010963172.1|1251332_1252121_+|hypothetical-protein
MNTKIFEMLIRRTGLRRDSKAEIIQLNRNEKAFVDEDKESIELAEAIFEENNMFRFRKSGPAMDYILHKLINDRKLFEEMKDRGTSIIRLFSLFSMYHGRLNCCVIRKGGCITECGILDYAGTYPELVPLEDFILIEPSSYLEYIVFDNENIRNRLAEDLTEDKTKLDIFLNGILATKNSDLVLSCINKIEVLNEEDRYFVNLLQKNGMLDYILNKDDTTLAKSTLKELLKLSILQEEKSTELESPQASSVNVSKAQQHCSI
>NC_002978.6|WP_010963173.1|1252251_1252848_-|TIGR02217-family-protein
MSFTEIRFPENISYGSTGGPEFSTDVVTTHNGCEQRNINWSHARTRYNIAYGVRSNEQLLELITFFHARKGKAIGFRFKDWSDFIAINQEIGIGDNKKTTFQLIKTYVSGEDKHIRMIKKPVYGTVKIYLNGKEESEYSVNYSTGEITFMKPPVKDAIITASFEFDVPVRFDTDYLNASIDDYGSNSWNNIPLVEVKF
>NC_002978.6|WP_010963174.1|1253038_1253797_-|DsbA-family-protein
MSRISFLLILIIAIASLPIINNWLSNRSQMLNDDYIGEKLDNYISRNFDKIVKTLKEESIKSSYAARDNVTKSKISQYKDQIFDLTYPYSGNENSSVIAVGFLDYSCGHCKAIKNDIKQLINDGKIKYIFRDAPILGNASLKAAKSALAVYFLDKEKYFDFHHAALSHKGEFSDESILDIVKNIGIDEDDFNDSIKDNADKIEQMINNSRLLVRDLGVGGTPFLIIGDSLFVGATDLNVLRKKVDELSHKQG
>NC_002978.6|WP_010081826.1|1254053_1254206_+|hypothetical-protein
MNEPIIGREKEIAILQDKLLSQSAEFIAVYGRRRVNVVLSAFYQHNIEVM
>NC_002978.6|WP_010963175.1|1254216_1255296_+|Fic-family-protein
MPMPNYTITSKIASCLIRIEAAKEKVLHLPLTVSMLLSLRETARLYTTHYSTMIEGNRLEPKQIEEVLSGKSHFPKYRRDENEVKGYYAALTQVEQWAARRIPITEKAVQTLHALVIASGKSKIKSTPYRDGQNVIRDSLTRAIIYMPPEAKDVPKLMSSMIDWIRNSEQVPCPIIAGIAHYQFVTIHPYYDGNGRTARLLTTLILHLGGYDLKGLYSLEEYYAKNLGAYYEAISVGPSHNYYMGRAEADITKWVEYFVEGMANSFENVLQRINEEEYHTDQTDLIRKLDPKQRKALELFQEFSAITASQVGELFNFKPRTSAQLCKKWVEMGFIKIVDFSNRGRKYKLSKQYEDLISN
>NC_002978.6|WP_010963176.1|1255383_1256862_+|UbiD-family-decarboxylase
MYNNLRDFIKALEEKKDLIRIKEEVSTVLEMTEIHRRVLSSKGPAIIFENVITENGKNSIPVLVNLFGTIKRIALGLNINPDELRDLGKLLAFLQSPEPPKNFKDAIKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITWPIVVTKGPTKEKQDNFNLGIYRMQVIDKKTTLMRWLAQRGGATHHKRWKEEGRDMKFPAAAVIGSDPATIIAAVTPVPETLSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDSYQDEGPYGDHTGYYNSVEQFPEFNITAITMRKNPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKSYPGQAKRIVMGILSFLKQFLYTKFIIVVDDDINVRDWKEVMWAMSTRMEPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGRKIEMSEEIVRKVAEKWEEYMD
>NC_002978.6|WP_010963177.1|1257640_1258498_-|4-hydroxybenzoate-octaprenyltransferase
MYFNHYFSLMRLHSLTGLWLVLFPSLSGILLASTSLSYQVLFLLVLFTIGAFLMRPAGCIINDIFDRKIDAHVERTKYRPLASGALNIKQALALLSLLLSIALVILLLTNKTTLILGIISMCMIATYPLLKRYVWWPQLFLGFTFNMGSLMGSAAITNQISIESLLFYIGCVFWTLSYDTIYAHQDKKDDEKLGMKSTALYFGDTTKSWLKRFYLISLMTWLYAGILSSLNNIFYIALLAVGFIFHRQYKNFNPDDPSQCMSIFKNNSYVGLLLFFGILLDRIIT
>NC_002978.6|WP_006279769.1|1258501_1258900_-|ribosome-binding-factor-A
MKKEIRNLKIASVLHRAISRVLMEGKVFNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVADYLDPEKRRTGDPSENNCDINTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT
>NC_002978.6|WP_010963178.1|1258909_1261234_-|translation-initiation-factor-IF-2
MNNEDISDKKLTLQGLSKLKLDLNLNSSASPSTGATVVKKRRKKSHDAEEHNLFDESKLCSLTEKEQIFRINAVQNAALLKERNQREEKEKTAKEDSNKEIDEKNEADALSKEINKQVLSNTHLVEPKEDSIDHEDNDKKSFKVNKDIYSKHSKLVIAQAIDEKTEQPPVFKQRFGIRGRKSKFTKGKNISREVIIPDKITIRELSIRMAEDSKSVLKMFKEEVGESYRVDDLVDPDIACEIVEKFNHTAKRVSDTNREKDLFFIEGRESLPKKPKPPIVTFMGHVDHGKTSLLDAFRESNVAERESGGITQHIGAYQITTKDKQKITFIDTPGHEAFTAMRARGANITNIVVIVVAADDGIMKQTVEAINHAKAANVSIIVAINKIDKSEPGDVEKIINSLPQYDLIPEGLGGDVMIMPVSAKKKTNLDKLEEAILLIAELMKLEAIEDCRALGWVIESKIDKAKGISATLIVEEGTLKVGDILVVGTTYSKVRSMVNHLGQREKAALPSAPIEITGLNGVPNAGDKFVVVNSEKQAREIVEYRLELIKKKKEDLGDNNLDIFSRNNSETEELSVVLKCDVTGSIEAISSSIDKLGKDQVKLNILHKAVGGITDSDVLLAEASSAVILAFNVKVDSKIRDLAKQKGIEIHTYNIIYELIDDMRMYLTKMLKPVTREVRVGFASVRQIFNVSKAGNIIGCYVSDGVIRKDSLIKVMRGGKLVHEGKLKALRRFKDDIKEVGVNFECGVSLEGNVDIKVGDILEAYQLVQEERVL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_002978_7	7.1\|854874\|49\|NC_002978\|CRISPRCasFinder	854874-854922	49	NC_002978.6	379989-380037	0	1.0
NC_002978_5	5.1\|522089\|51\|NC_002978\|CRISPRCasFinder	522089-522139	51	NC_002978.6	341291-341341	2	0.961
NC_002978_8	8.1\|950570\|51\|NC_002978\|CRISPRCasFinder	950570-950620	51	NC_002978.6	341291-341341	2	0.961

1. spacer 7.1|854874|49|NC_002978|CRISPRCasFinder matches to position: 379989-380037, mismatch: 0, identity: 1.0

tgacggtatgacggttcgcgcggtggcatgacctcgtcatcccgctact	CRISPR spacer
tgacggtatgacggttcgcgcggtggcatgacctcgtcatcccgctact	Protospacer
*************************************************

2. spacer 5.1|522089|51|NC_002978|CRISPRCasFinder matches to position: 341291-341341, mismatch: 2, identity: 0.961

tggtatgacggttaagtaattcgtcatcccgctgcttgttagcgggatcta	CRISPR spacer
tggtatgacagttaagtaattcgtcatcccgctacttgttagcgggatcta	Protospacer
*********.***********************.*****************

3. spacer 8.1|950570|51|NC_002978|CRISPRCasFinder matches to position: 341291-341341, mismatch: 2, identity: 0.961

tggtatgacggttaagtaattcgtcatcccgctgcttgttagcgggatcta	CRISPR spacer
tggtatgacagttaagtaattcgtcatcccgctacttgttagcgggatcta	Protospacer
*********.***********************.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29212 : 132978

103

Shigella_phage(19.23%)

tRNA,transposase,integrase

attL 46830:46889|attR 127090:128011

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010962313.1\|29212_30175_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_050707705.1\|30200_30629_-	hypothetical protein	NA	NA	NA	NA
WP_050707706.1\|30691_31135_-	hypothetical protein	NA	NA	NA	NA
WP_022626191.1\|31182_31323_-	hypothetical protein	NA	NA	NA	NA
WP_010962316.1\|31466_32744_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-99	50.0
WP_010962317.1\|32778_34050_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_010962321.1\|36603_37257_-	hypothetical protein	NA	NA	NA	NA
WP_006280296.1\|37670_38537_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962322.1\|38840_39767_+	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	5.7e-32	30.4
WP_010962323.1\|39756_40110_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_010962324.1\|40151_41414_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_010962325.1\|41419_43054_-	ribonuclease J	NA	NA	NA	NA
WP_010962326.1\|43263_44382_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	4.2e-29	32.9
WP_010962328.1\|45766_46177_-	hypothetical protein	NA	NA	NA	NA
WP_010962329.1\|46173_46860_-	reverse transcriptase, interruption-C	A0A0U4J920	Pseudomonas_phage	6.5e-25	34.1
46830:46889	attL	NA	NA	NA	NA
WP_099606204.1\|46856_47689_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_099606205.1\|47716_48118_-	hypothetical protein	NA	NA	NA	NA
WP_167513688.1\|48063_48840_-	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	4.2e-28	39.4
WP_010962336.1\|52110_52752_+	dioxygenase	NA	NA	NA	NA
WP_010962337.1\|52848_54351_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	7.7e-55	39.0
WP_010962338.1\|55044_56232_+	MFS transporter	NA	NA	NA	NA
WP_006279881.1\|56292_56598_+	integration host factor subunit alpha	NA	NA	NA	NA
WP_006279880.1\|56597_56924_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_006279879.1\|56969_57566_+	M23 family metallopeptidase	A0A7K9	Microcystis_virus	2.8e-08	35.5
WP_010962340.1\|57578_60095_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.1e-158	37.8
WP_010962341.1\|60223_60859_+	membrane protein	NA	NA	NA	NA
WP_010082072.1\|61331_61496_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|61488_61650_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_099606206.1\|61653_62088_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-09	36.4
WP_081420799.1\|62072_62366_-\|transposase	transposase	NA	NA	NA	NA
WP_006279877.1\|62502_63210_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_010082594.1\|63202_63514_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_006279875.1\|63660_64116_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_010962343.1\|64126_64585_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_010082597.1\|64714_65938_+	TolC family protein	NA	NA	NA	NA
WP_010082598.1\|65957_66533_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_010962344.1\|66609_67188_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_015588824.1\|70946_71258_+	hypothetical protein	NA	NA	NA	NA
WP_010962350.1\|72248_72659_+	hypothetical protein	NA	NA	NA	NA
WP_010962351.1\|72633_73023_+	hypothetical protein	NA	NA	NA	NA
WP_022626199.1\|73088_73874_+	hypothetical protein	NA	NA	NA	NA
WP_010082072.1\|74380_74545_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|74537_74699_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_099606206.1\|74702_75137_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-09	36.4
WP_081420799.1\|75121_75415_-\|transposase	transposase	NA	NA	NA	NA
WP_022626200.1\|75577_76750_-	porin	NA	NA	NA	NA
WP_010962355.1\|76812_77628_-	PAS domain-containing protein	NA	NA	NA	NA
WP_006280349.1\|77861_78647_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010962357.1\|78663_80169_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_080717647.1\|80416_80587_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_022626429.1\|80673_80826_-\|transposase	transposase	NA	NA	NA	NA
WP_080717648.1\|80842_80989_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_022626203.1\|81377_82871_-	IMP dehydrogenase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	9.7e-42	41.5
WP_038228092.1\|82987_83800_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010962359.1\|83975_84704_+	triosephosphate isomerase	NA	NA	NA	NA
WP_010962360.1\|84778_85867_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.5e-28	35.3
WP_010082601.1\|85928_86303_+	ferredoxin family protein	NA	NA	NA	NA
WP_010082603.1\|87359_88313_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_010962363.1\|88293_89052_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_010082605.1\|90713_91820_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.2e-42	33.9
WP_010962364.1\|91919_92234_+	multidrug transporter	NA	NA	NA	NA
WP_006279756.1\|92250_92595_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_010962365.1\|94146_97287_-	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_010962366.1\|97421_100007_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_006279761.1\|100021_100525_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_010962367.1\|100689_101340_+	Tim44 domain-containing protein	NA	NA	NA	NA
WP_010082574.1\|101357_102053_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.0e-38	37.9
WP_010962368.1\|102097_102706_+	SCO family protein	NA	NA	NA	NA
WP_010962369.1\|102736_102997_+	hypothetical protein	NA	NA	NA	NA
WP_010962371.1\|103514_105902_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	4.3e-108	34.3
WP_010962372.1\|105995_106253_+	hypothetical protein	NA	NA	NA	NA
WP_081420800.1\|106590_106944_+\|transposase	transposase	NA	NA	NA	NA
WP_081420801.1\|106897_107200_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.3e-09	42.5
WP_156768648.1\|107323_107488_+	hypothetical protein	NA	NA	NA	NA
WP_080717620.1\|107477_107642_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010962373.1\|107884_109213_+\|transposase	IS4-like element ISWen1 family transposase	NA	NA	NA	NA
WP_010962374.1\|109314_110595_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_022626207.1\|110620_111241_-	hypothetical protein	NA	NA	NA	NA
WP_010962378.1\|112138_114253_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.8e-73	42.5
WP_006279515.1\|114253_114532_-	YggT family protein	NA	NA	NA	NA
WP_007550684.1\|114703_114979_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006279415.1\|114969_115191_-	hypothetical protein	NA	NA	NA	NA
WP_010962380.1\|115274_115586_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_022626208.1\|115566_115788_-	hypothetical protein	NA	NA	NA	NA
WP_010962382.1\|115886_116159_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006279413.1\|116160_116379_-	hypothetical protein	NA	NA	NA	NA
WP_006279412.1\|116579_117017_-	hypothetical protein	NA	NA	NA	NA
WP_010962383.1\|117502_118093_-	CvpA family protein	NA	NA	NA	NA
WP_010962384.1\|118150_118747_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.9e-21	31.4
WP_010962385.1\|118928_120659_-	hypothetical protein	NA	NA	NA	NA
WP_010962386.1\|120805_121849_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	6.4e-32	36.4
WP_010962387.1\|121849_123142_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	3.9e-23	33.9
WP_010082251.1\|124162_124465_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_010962388.1\|124475_124745_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_010962389.1\|124888_126061_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.9e-90	47.0
WP_099606204.1\|126289_127121_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_099606207.1\|127112_127790_+	TenA family protein	NA	NA	NA	NA
WP_010962391.1\|127834_128494_+	TenA family transcriptional regulator	NA	NA	NA	NA
127090:128011	attR	NA	NA	NA	NA
WP_006279354.1\|128541_129369_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_010962392.1\|129369_129858_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_010082183.1\|129902_130370_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_138264918.1\|130673_130859_-	hypothetical protein	NA	NA	NA	NA
WP_010962393.1\|131553_132978_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA

DBSCAN-SWA_2

136555 : 193330

Shigella_phage(23.08%)

tRNA,transposase,integrase

attL 126289:126348|attR 198200:199058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
126289:126348	attL	NA	NA	NA	NA
WP_010082300.1\|136555_137929_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	2.0e-49	31.1
WP_010962396.1\|137921_138578_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_010962397.1\|138668_139325_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_006013840.1\|139491_139659_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_006280146.1\|139787_140561_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-27	34.9
WP_010962398.1\|140886_142704_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_010962399.1\|142687_144805_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_010082308.1\|144808_145648_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_022626214.1\|145692_146451_-	hypothetical protein	NA	NA	NA	NA
WP_010962401.1\|146597_147593_-	porphobilinogen synthase	NA	NA	NA	NA
WP_010962402.1\|147585_148611_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_173862891.1\|148594_150664_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_006279675.1\|150648_150861_-	hypothetical protein	NA	NA	NA	NA
WP_007548280.1\|150927_151134_-	hypothetical protein	NA	NA	NA	NA
WP_010962404.1\|151795_152617_-	uracil-DNA glycosylase	A0A127AW33	Bacillus_phage	1.5e-12	30.8
WP_010962405.1\|152606_153146_-	peptide deformylase	E3SLL2	Synechococcus_phage	4.0e-22	41.8
WP_010962406.1\|153284_154523_+	cell division protein FtsA	NA	NA	NA	NA
WP_010962407.1\|154655_155438_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_010962408.1\|155465_156713_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.6e-50	31.6
WP_010962409.1\|156926_157871_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_010962410.1\|157867_158179_+	hypothetical protein	NA	NA	NA	NA
WP_010962411.1\|158479_158779_-	ETC complex I subunit	NA	NA	NA	NA
WP_010962412.1\|158924_159536_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_010962413.1\|159535_160084_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010962414.1\|160086_161049_-\|transposase	IS481-like element ISWpi4 family transposase	NA	NA	NA	NA
WP_010962415.1\|161491_162640_-	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_010962416.1\|163208_163733_+	hypothetical protein	NA	NA	NA	NA
WP_010962417.1\|163807_164830_-	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_010962418.1\|164837_165248_-	hypothetical protein	NA	NA	NA	NA
WP_022626216.1\|165244_165568_-	HNH endonuclease	NA	NA	NA	NA
WP_010082069.1\|165722_166016_+\|transposase	transposase	NA	NA	NA	NA
WP_099606206.1\|166000_166435_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-09	36.4
WP_010082071.1\|166438_166600_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_010082072.1\|166592_166757_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_022626217.1\|166848_168252_-	nitronate monooxygenase	NA	NA	NA	NA
WP_146038202.1\|168371_168449_-	hypothetical protein	NA	NA	NA	NA
WP_006280338.1\|168603_169191_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_010962422.1\|169486_170665_-	ribonuclease D	A0A0M5KJQ5	Mollivirus	1.4e-06	29.9
WP_041580618.1\|171549_174045_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.9e-30	22.7
WP_010962425.1\|174319_175126_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_006279522.1\|175311_175494_-	hypothetical protein	NA	NA	NA	NA
WP_010082284.1\|175891_176599_+	membrane protein	A0A0R6PEZ3	Moraxella_phage	2.5e-27	35.6
WP_010962427.1\|176631_178194_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_006280151.1\|179172_180957_-	ribonucleoside-diphosphate reductase subunit alpha	A0A0K1LMZ5	Caulobacter_phage	1.3e-202	59.9
WP_010962429.1\|181015_182092_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_010962430.1\|185451_185715_-	hypothetical protein	NA	NA	NA	NA
WP_006279896.1\|185800_185938_-	hypothetical protein	NA	NA	NA	NA
WP_006279898.1\|186143_186278_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_038228098.1\|186385_187474_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_010962432.1\|187575_189003_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_006279902.1\|189015_189360_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_010962434.1\|189747_189966_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_080717647.1\|190142_190313_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_022626429.1\|190399_190552_-\|transposase	transposase	NA	NA	NA	NA
WP_080717648.1\|190568_190715_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010962435.1\|191145_191856_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_010962436.1\|192136_192760_+	hypothetical protein	NA	NA	NA	NA
WP_010962437.1\|192754_193330_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
198200:199058	attR	NA	NA	NA	NA

DBSCAN-SWA_3

197425 : 391659

176

Wolbachia_phage(37.31%)

capsid,head,tRNA,transposase,terminase,protease,tail,plate,integrase

attL 197401:197460|attR 308704:309623

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
197401:197460	attL	NA	NA	NA	NA
WP_099606204.1\|197425_198258_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_010962438.1\|198457_199489_+	DUF1016 family protein	Q9JMP5	Wolbachia_phage	7.9e-184	92.4
WP_007548499.1\|199565_199712_+	hypothetical protein	NA	NA	NA	NA
WP_010962439.1\|199695_200418_+	DNA repair protein RecO	NA	NA	NA	NA
WP_010962440.1\|200590_200755_+	hypothetical protein	NA	NA	NA	NA
WP_010962441.1\|200877_202260_-	PleD family two-component system response regulator	G3MA91	Bacillus_virus	5.1e-21	34.6
WP_010082258.1\|202231_202528_-	hypothetical protein	NA	NA	NA	NA
WP_010962443.1\|202532_207257_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_010962444.1\|207284_209846_-	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	1.5e-122	34.0
WP_173862872.1\|210234_210378_-	hypothetical protein	NA	NA	NA	NA
WP_010962446.1\|210617_211061_-\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.1e-28	79.3
WP_010962447.1\|211123_212953_-	translational GTPase TypA	E4ZFJ7	Streptococcus_phage	8.0e-22	40.8
WP_010962448.1\|213058_213661_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_010962449.1\|213664_214849_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_022626228.1\|215047_216373_-	dihydroorotase	NA	NA	NA	NA
WP_010962451.1\|216495_217737_-	hypothetical protein	NA	NA	NA	NA
WP_010962452.1\|217905_220032_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_010082185.1\|222589_223465_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.0e-43	40.0
WP_006279648.1\|223471_223987_-\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_010962455.1\|224121_225831_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_006279647.1\|225808_226237_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-13	35.0
WP_007549265.1\|226236_226719_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_010082383.1\|227204_227405_+	hypothetical protein	NA	NA	NA	NA
WP_167471207.1\|227857_228025_+	hypothetical protein	NA	NA	NA	NA
WP_022626232.1\|228146_228800_-	hypothetical protein	NA	NA	NA	NA
WP_006279458.1\|228863_229325_-	dUTP diphosphatase	V5L6Y7	Insectomime_virus	7.2e-36	55.1
WP_121692649.1\|229545_229593_+	hypothetical protein	NA	NA	NA	NA
WP_010962459.1\|229739_230651_-	acetylglutamate kinase	NA	NA	NA	NA
WP_010962460.1\|230655_231249_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_007548640.1\|231347_232427_+	peptide chain release factor 1	NA	NA	NA	NA
WP_010962461.1\|232454_233618_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	4.8e-20	26.1
WP_006279391.1\|234081_235011_+	AEC family transporter	NA	NA	NA	NA
WP_080717648.1\|235545_235692_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_022626429.1\|235708_235861_+\|transposase	transposase	NA	NA	NA	NA
WP_080717647.1\|235947_236118_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_010962462.1\|236374_237706_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_010962373.1\|237747_239076_-\|transposase	IS4-like element ISWen1 family transposase	NA	NA	NA	NA
WP_010962463.1\|239194_240427_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.8e-58	58.3
WP_010962465.1\|241134_242061_-	helix-turn-helix domain-containing protein	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	5.6e-88	59.4
WP_010962466.1\|242139_243333_-	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	4.2e-197	95.2
WP_010962468.1\|245828_246833_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	1.8e-180	94.6
WP_010962471.1\|248607_249837_+	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.9e-214	89.4
WP_010962472.1\|249853_250345_+	MarR family transcriptional regulator	A0A1B2LRT3	Wolbachia_phage	1.5e-63	83.0
WP_010962473.1\|250514_252341_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	0.0e+00	85.2
WP_010082193.1\|252340_252562_+	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	1.0e-24	83.6
WP_010082194.1\|252607_253021_+	hypothetical protein	NA	NA	NA	NA
WP_010082195.1\|253221_253443_+	hypothetical protein	NA	NA	NA	NA
WP_010082196.1\|253423_253732_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_022626237.1\|256858_257920_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_010962475.1\|257894_258266_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	2.2e-51	86.9
WP_010962476.1\|258343_259345_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	3.3e-187	95.2
WP_010082171.1\|259435_259696_+	hypothetical protein	Q9JMM1	Wolbachia_phage	9.6e-22	71.8
WP_010962477.1\|259881_260904_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_010962479.1\|261228_261726_+\|tail	phage tail protein	Q75QM4	Wolbachia_phage	8.9e-24	45.1
WP_010962480.1\|261732_262206_+	hypothetical protein	Q75QM3	Wolbachia_phage	8.6e-61	70.7
WP_010082109.1\|262658_262913_+	PAAR domain-containing protein	A0A1B2LRW2	Wolbachia_phage	1.5e-14	77.8
WP_015588922.1\|262909_263245_+	GPW/gp25 family protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	9.1e-41	73.9
WP_010962482.1\|263247_264057_+\|plate	baseplate J/gp47 family protein	Q9JML6	Wolbachia_phage	7.2e-116	82.5
WP_015588924.1\|264056_265217_+\|tail	phage tail protein	Q9JML5	Wolbachia_phage	1.7e-190	81.0
WP_010962484.1\|265390_265993_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962485.1\|266254_266845_+	ankyrin repeat domain-containing protein	F8QZT9	Wolbachia_phage	1.5e-06	46.5
WP_010962486.1\|266877_267306_+	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	1.5e-59	83.7
WP_010962487.1\|267308_268811_+	recombinase family protein	Q9JML1	Wolbachia_phage	1.9e-247	85.7
WP_010962488.1\|268880_269024_+	hypothetical protein	NA	NA	NA	NA
WP_010962489.1\|268998_270213_+	hypothetical protein	NA	NA	NA	NA
WP_022626240.1\|270373_271201_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962491.1\|271149_273255_-	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	1.3e-121	48.2
WP_010962493.1\|273599_275225_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962494.1\|275578_276469_+	hypothetical protein	NA	NA	NA	NA
WP_010962495.1\|276457_277369_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	5.1e-126	80.7
WP_038198869.1\|277948_278233_+\|transposase	transposase	NA	NA	NA	NA
WP_081420805.1\|278321_278681_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.9e-08	38.1
WP_156768652.1\|278680_278845_+	hypothetical protein	NA	NA	NA	NA
WP_080717614.1\|278834_278999_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010962498.1\|279695_280460_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_010962499.1\|280475_282026_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	7.1e-11	35.0
WP_010962500.1\|282027_282915_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_010082655.1\|283090_283528_+	ribonuclease HI	J9Q745	Salmonella_phage	5.9e-32	44.1
WP_010962501.1\|283520_286643_+	AsmA-like C-terminal domain-containing protein	NA	NA	NA	NA
WP_010962503.1\|287205_288855_-	chaperonin GroEL	A0A240F779	uncultured_virus	6.4e-127	47.5
WP_173862895.1\|288955_289237_-	co-chaperone GroES	A0A221S3F7	uncultured_virus	2.7e-09	38.9
WP_010962504.1\|289404_290211_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_010962506.1\|291028_292768_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.6e-64	31.6
WP_010962507.1\|292828_293062_-	hypothetical protein	NA	NA	NA	NA
WP_010962508.1\|293058_293262_-	hypothetical protein	NA	NA	NA	NA
WP_010962509.1\|293833_295093_-	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_010962510.1\|295127_296423_-	sodium:proton antiporter	NA	NA	NA	NA
WP_010962511.1\|296712_299166_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.1e-199	47.4
WP_010962512.1\|299181_300459_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.0e-108	51.4
WP_010962513.1\|300458_301085_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	4.3e-60	60.9
WP_010962514.1\|301096_302431_-	trigger factor	NA	NA	NA	NA
WP_010962515.1\|302811_303408_+	BON domain-containing protein	NA	NA	NA	NA
WP_010962516.1\|303468_304398_+	glutathione synthase	NA	NA	NA	NA
WP_007549072.1\|304382_305414_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_006279962.1\|305483_305876_+	hypothetical protein	NA	NA	NA	NA
WP_010962518.1\|305881_307255_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	4.3e-44	28.4
WP_022626244.1\|307330_307753_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.1e-17	41.7
WP_022626245.1\|308062_308245_-	hypothetical protein	NA	NA	NA	NA
WP_099606204.1\|308728_309561_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_050707711.1\|309625_310033_-\|transposase	transposase	NA	NA	NA	NA
308704:309623	attR	NA	NA	NA	NA
WP_010082383.1\|310052_310253_-	hypothetical protein	NA	NA	NA	NA
WP_010962519.1\|310941_312285_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_010962520.1\|312320_312479_+	hypothetical protein	NA	NA	NA	NA
WP_010962521.1\|312631_315310_+	hypothetical protein	NA	NA	NA	NA
WP_010082554.1\|315301_315898_-	septum formation protein Maf	NA	NA	NA	NA
WP_007550159.1\|315875_316139_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_010962522.1\|316251_318729_-	hypothetical protein	NA	NA	NA	NA
WP_010962523.1\|319812_321090_-	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	5.9e-56	32.3
WP_010962524.1\|321270_322866_+	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	4.2e-99	57.8
WP_010962525.1\|323342_324053_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_006280267.1\|324188_325019_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_006279631.1\|325068_325197_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_010962526.1\|325246_325561_+	septum formation initiator family protein	NA	NA	NA	NA
WP_081420807.1\|325640_325943_+\|transposase	transposase	NA	NA	NA	NA
WP_099606206.1\|325927_326362_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-09	36.4
WP_041580622.1\|326365_326581_+	hypothetical protein	NA	NA	NA	NA
WP_010082072.1\|326573_326738_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010962527.1\|326838_327921_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_010082532.1\|328122_329205_-	Fic family protein	A0A1V0E025	Clostridioides_phage	4.6e-09	26.5
WP_010082533.1\|329442_331191_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-59	35.1
WP_080717604.1\|331800_331857_-	hypothetical protein	NA	NA	NA	NA
WP_010962529.1\|332091_333267_+	multifunctional ribose 5-phosphate isomerase B/3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	A0A1B1IVA4	uncultured_Mediterranean_phage	4.0e-06	28.3
WP_010082521.1\|333278_333719_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_010962530.1\|333858_335496_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.6e-93	36.0
WP_167513689.1\|335569_336724_-	hypothetical protein	NA	NA	NA	NA
WP_010962532.1\|336841_338293_-	replicative DNA helicase	A0A218KST2	Xenohaliotis_phage	3.0e-72	37.3
WP_010962533.1\|338514_339111_+	RDD family protein	NA	NA	NA	NA
WP_010962534.1\|339921_340596_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	4.5e-47	42.8
WP_010082530.1\|340873_341164_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_022626255.1\|341470_344692_-	UvrD-helicase domain-containing protein	G3MA40	Bacillus_virus	2.3e-11	32.3
WP_010082535.1\|344773_345640_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_010082536.1\|345643_346009_+	Mth938-like domain-containing protein	NA	NA	NA	NA
WP_010962536.1\|346010_346811_+	metal ABC transporter permease	NA	NA	NA	NA
WP_010082539.1\|346942_347122_+	hypothetical protein	NA	NA	NA	NA
WP_010962537.1\|347127_348120_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_010082541.1\|348289_349336_+	Fic family protein	D7RWK9	Brochothrix_phage	5.1e-05	23.0
WP_010962540.1\|349681_349894_+	hypothetical protein	NA	NA	NA	NA
WP_010962542.1\|349960_350746_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_010962543.1\|350742_351501_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-20	33.3
WP_081420807.1\|351579_351882_+\|transposase	transposase	NA	NA	NA	NA
WP_099606206.1\|351866_352301_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-09	36.4
WP_010082071.1\|352304_352466_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_010082072.1\|352458_352623_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_179943604.1\|352802_353907_-	peptide chain release factor 2	NA	NA	NA	NA
WP_010962545.1\|354060_355431_+	magnesium transporter	NA	NA	NA	NA
WP_010962546.1\|358417_359434_-	substrate-binding domain-containing protein	A0A1B1IWY0	uncultured_Mediterranean_phage	9.8e-62	38.6
WP_006280485.1\|359575_360133_+	dCTP deaminase	S5VM63	Pseudomonas_phage	1.5e-56	62.7
WP_010962547.1\|360133_360493_-	hypothetical protein	NA	NA	NA	NA
WP_010962549.1\|361425_364761_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	3.0e-115	29.2
WP_022626257.1\|364818_365634_+	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	5.5e-31	41.8
WP_050707716.1\|366028_367192_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_010962552.1\|367325_368954_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_138264940.1\|368984_369191_-	hypothetical protein	NA	NA	NA	NA
WP_010962554.1\|369208_371281_-	transketolase	NA	NA	NA	NA
WP_010962555.1\|371394_372009_+	30S ribosomal protein S4	NA	NA	NA	NA
WP_010962556.1\|372135_372336_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_010082513.1\|372782_373124_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_006279619.1\|373161_373476_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_010082514.1\|373468_374332_+	lipoyl synthase	NA	NA	NA	NA
WP_010962557.1\|374385_375102_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_010962558.1\|375098_376214_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_081420808.1\|376188_376578_-	hypothetical protein	NA	NA	NA	NA
WP_010962559.1\|376584_377325_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.4e-57	59.9
WP_173862902.1\|378906_379050_-	hypothetical protein	NA	NA	NA	NA
WP_010082515.1\|379298_379742_-\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	9.0e-28	76.8
WP_010962562.1\|380762_382469_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.1e-52	29.0
WP_010962563.1\|382664_382883_+	hypothetical protein	NA	NA	NA	NA
WP_010962564.1\|382976_384683_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_010962565.1\|384777_385002_+	hypothetical protein	NA	NA	NA	NA
WP_010962566.1\|384982_385282_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_167513690.1\|385608_385764_+	hypothetical protein	NA	NA	NA	NA
WP_006280467.1\|386283_387579_-	sodium:proton antiporter	NA	NA	NA	NA
WP_155975180.1\|387782_387950_+	hypothetical protein	NA	NA	NA	NA
WP_007548816.1\|388607_389231_-	heme ABC exporter ATP-binding protein CcmA	NA	NA	NA	NA
WP_010962571.1\|389234_389666_-	hypothetical protein	NA	NA	NA	NA
WP_010962572.1\|389856_391659_+\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	2.5e-07	22.0

DBSCAN-SWA_4

431427 : 641027

175

Wolbachia_phage(58.02%)

capsid,head,tRNA,transposase,terminase,protease,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010962602.1\|431427_431961_-\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	2.3e-30	43.2
WP_080717608.1\|432550_432625_+	hypothetical protein	NA	NA	NA	NA
WP_010962604.1\|433213_434311_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_010962605.1\|434307_435069_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.3e-49	44.6
WP_010081874.1\|435122_435578_-	arginine repressor ArgR	NA	NA	NA	NA
WP_022626280.1\|435703_436438_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_022626279.1\|436437_437085_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_010962606.1\|437068_437710_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-26	36.8
WP_099606204.1\|437812_438644_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_010962607.1\|439019_440219_-\|capsid	phage major capsid protein	S5FUW7	Shigella_phage	7.5e-53	33.7
WP_010962608.1\|440267_440561_+	hypothetical protein	NA	NA	NA	NA
WP_010962609.1\|440753_441551_-	hypothetical protein	NA	NA	NA	NA
WP_010082622.1\|441600_442275_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_010962610.1\|442305_443628_-	hypothetical protein	NA	NA	NA	NA
WP_022626278.1\|443804_444047_-	hypothetical protein	NA	NA	NA	NA
WP_010962611.1\|444088_445303_-	ATP-binding protein	NA	NA	NA	NA
WP_010962612.1\|445369_447964_-\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	1.5e-247	51.2
WP_022626277.1\|448213_449323_+	hypothetical protein	NA	NA	NA	NA
WP_010962614.1\|449373_449889_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_010962615.1\|450033_450354_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_010962616.1\|450353_451943_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.2e-153	51.0
WP_010962617.1\|451968_452376_+	nucleoside deaminase	NA	NA	NA	NA
WP_099606210.1\|452416_453688_-	MFS transporter	NA	NA	NA	NA
WP_022626274.1\|453797_454064_-	hypothetical protein	NA	NA	NA	NA
WP_010962620.1\|454778_455879_+	AAA family ATPase	E5ESM9	Bathycoccus_sp._RCC1105_virus	3.2e-42	42.7
WP_010962621.1\|456426_457425_+	pyruvate dehydrogenase complex E1 component subunit beta	A0A0K0KW14	Prochlorococcus_phage	2.0e-11	29.5
WP_006279664.1\|457400_457775_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_167513691.1\|457835_458048_-	hypothetical protein	NA	NA	NA	NA
WP_010082651.1\|458474_460271_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	1.3e-19	41.5
WP_010962622.1\|460346_461741_-	malonyl-CoA decarboxylase	NA	NA	NA	NA
WP_010962623.1\|462763_463456_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_006280002.1\|463436_463712_-	hypothetical protein	NA	NA	NA	NA
WP_010962624.1\|463879_464725_-	SPFH domain-containing protein	NA	NA	NA	NA
WP_010962625.1\|464732_465671_-	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	3.7e-23	47.8
WP_010962626.1\|465674_466415_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010962627.1\|466474_467182_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_010962628.1\|467242_468184_-	hypothetical protein	NA	NA	NA	NA
WP_010962629.1\|468304_468838_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_010962630.1\|468972_470295_+	malate dehydrogenase	NA	NA	NA	NA
WP_080717615.1\|470309_471182_-	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_006280012.1\|471347_471566_+	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_006280013.1\|471581_471905_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_010962632.1\|472099_473494_-	class II fumarate hydratase	NA	NA	NA	NA
WP_156518039.1\|473715_473853_-	hypothetical protein	NA	NA	NA	NA
WP_010962633.1\|473886_474909_-	GTPase ObgE	NA	NA	NA	NA
WP_010962634.1\|474896_476171_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.7e-135	60.3
WP_010962635.1\|476175_477672_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_010082236.1\|477698_478373_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.4e-18	51.7
WP_010962639.1\|480706_482209_+	secretion system protein	NA	NA	NA	NA
WP_038228260.1\|482216_483128_-	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_010962641.1\|483194_484421_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_010962643.1\|484810_486280_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_010962645.1\|488973_489912_-	helix-turn-helix transcriptional regulator	A0A1B2LRR8	Wolbachia_phage	7.5e-157	96.2
WP_010962646.1\|489980_491777_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	0.0e+00	98.5
WP_010962647.1\|492697_493627_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.7e-105	76.6
WP_173887057.1\|493946_497069_-	latrotoxin-related protein	NA	NA	NA	NA
WP_010962649.1\|497223_505755_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_010962650.1\|505790_507200_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_099606204.1\|507952_508785_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_041580719.1\|510912_511197_+\|transposase	transposase	NA	NA	NA	NA
WP_095866567.1\|511218_511560_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_156768661.1\|511644_511809_+	hypothetical protein	NA	NA	NA	NA
WP_080717614.1\|511798_511963_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_022626263.1\|512652_513516_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_006279325.1\|513886_514393_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.3e-30	47.1
WP_010962656.1\|514461_514653_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_010082212.1\|514669_515296_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_006279327.1\|515285_515981_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	2.2e-20	47.9
WP_010962658.1\|516256_516814_-	ribosome recycling factor	NA	NA	NA	NA
WP_010962659.1\|516821_517565_-	UMP kinase	NA	NA	NA	NA
WP_010962660.1\|517575_518436_-	elongation factor Ts	NA	NA	NA	NA
WP_010962661.1\|518416_519265_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_010081840.1\|519670_520042_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.1e-13	45.7
WP_010962662.1\|520122_521943_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1GV45	Paramecium_bursaria_Chlorella_virus	2.4e-95	37.2
WP_010962663.1\|522250_522694_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.8e-28	79.3
WP_173862902.1\|522942_523086_+	hypothetical protein	NA	NA	NA	NA
WP_010962664.1\|524667_525501_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.1e-58	59.3
WP_010962665.1\|525615_525807_-	hypothetical protein	NA	NA	NA	NA
WP_010082163.1\|525903_526791_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_010962666.1\|526781_527660_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_010962667.1\|528615_529788_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_022626293.1\|529826_531785_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_050707712.1\|531781_532234_-	ATP-binding protein	NA	NA	NA	NA
WP_099606204.1\|532314_533146_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_041580627.1\|533126_534095_-	hypothetical protein	NA	NA	NA	NA
WP_010962669.1\|534398_537005_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_010962671.1\|538420_539062_-	fructose-6-phosphate aldolase	M1PR54	Cyanophage	5.8e-44	45.8
WP_010082297.1\|539101_539443_-	hypothetical protein	A0A1B2LRQ3	Wolbachia_phage	3.8e-10	52.2
WP_081420812.1\|539713_540067_+\|transposase	transposase	NA	NA	NA	NA
WP_095866567.1\|540020_540362_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_156768648.1\|540446_540611_+	hypothetical protein	NA	NA	NA	NA
WP_080717620.1\|540600_540765_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010082295.1\|541288_542167_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.6e-39	40.0
WP_010962673.1\|542150_542726_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_010082293.1\|542718_542985_-	DUF2312 domain-containing protein	B0VK10	Azospirillum_phage	1.7e-10	40.7
WP_010962674.1\|542998_544282_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_010962675.1\|544370_545549_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_010962676.1\|545824_546997_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_153296793.1\|547024_547168_-	hypothetical protein	NA	NA	NA	NA
WP_010962373.1\|548106_549435_+\|transposase	IS4-like element ISWen1 family transposase	NA	NA	NA	NA
WP_010962679.1\|549881_550790_-	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	1.7e-145	84.8
WP_022626301.1\|550805_551021_-	hypothetical protein	A0A1B2LRU2	Wolbachia_phage	3.2e-15	66.2
WP_010962680.1\|551075_551597_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010962681.1\|551653_552598_-\|tail	tail protein	A0A1B2LRT8	Wolbachia_phage	7.3e-136	76.0
WP_010081876.1\|552598_552808_-\|tail	tail protein X	A0A1B2LRT9	Wolbachia_phage	8.2e-24	73.9
WP_022626303.1\|552804_553152_-\|tail	phage tail protein	A0A1B2LRV9	Wolbachia_phage	4.5e-43	71.9
WP_010962685.1\|555525_555783_-\|tail	phage tail assembly protein	A0A1B2LRV6	Wolbachia_phage	1.6e-37	98.8
WP_007303020.1\|556123_556324_-	hypothetical protein	NA	NA	NA	NA
WP_010082216.1\|556385_556883_-\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	4.0e-85	92.3
WP_010962686.1\|558073_558625_-	hypothetical protein	Q75QL3	Wolbachia_phage	3.3e-56	70.8
WP_022626305.1\|558631_560062_-	hypothetical protein	Q75QL4	Wolbachia_phage	2.1e-203	91.5
WP_010962688.1\|560058_560253_-	hypothetical protein	A0A1B2LRW5	Wolbachia_phage	2.6e-24	81.2
WP_010962689.1\|560257_561436_-	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	5.1e-203	90.8
WP_010962690.1\|561445_563374_-	DUF4815 domain-containing protein	A0A1B2LRP5	Wolbachia_phage	0.0e+00	95.6
WP_010962691.1\|563390_564092_-	hypothetical protein	A0A1B2LRU4	Wolbachia_phage	5.7e-101	79.8
WP_010962692.1\|564174_566223_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	1.4e-237	73.6
WP_010962695.1\|567452_567953_-	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	1.6e-68	79.6
WP_099606204.1\|568241_569074_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_010962698.1\|569703_570525_-	ATP-binding protein	E9P631	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	8.1e-131	85.0
WP_010962699.1\|570618_571113_-	sigma-70 family RNA polymerase sigma factor	A0A1B2LRS7	Wolbachia_phage	3.3e-39	54.0
WP_038228276.1\|571695_572145_+	Holliday junction DNA helicase	Q9JMN0	Wolbachia_phage	7.9e-80	96.6
WP_010962700.1\|572258_573485_+	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.8e-220	92.6
WP_010962701.1\|573498_573978_+	hypothetical protein	Q9JMM9	Wolbachia_phage	9.6e-76	95.0
WP_010962702.1\|573981_575463_+	ankyrin repeat domain-containing protein	F8QZT7	Wolbachia_phage	7.0e-218	84.5
WP_010962703.1\|575459_577283_+\|terminase	phage terminase large subunit family protein	Q9JMM7	Wolbachia_phage	0.0e+00	96.0
WP_010962704.1\|577286_577520_+	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	2.0e-26	80.8
WP_012673197.1\|577560_577821_+	hypothetical protein	NA	NA	NA	NA
WP_010962706.1\|577811_578093_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1C9M026	Mycobacterium_phage	3.0e-05	51.4
WP_006280203.1\|579609_580671_+	S49 family peptidase	Q75QM8	Wolbachia_phage	1.6e-163	87.1
WP_010082142.1\|580745_581117_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.0e-53	89.4
WP_010962707.1\|581153_582158_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	9.7e-187	94.6
WP_007550857.1\|582255_582561_+	hypothetical protein	Q9JMM1	Wolbachia_phage	3.4e-42	78.2
WP_006280189.1\|585536_587732_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	0.0e+00	99.8
WP_010962710.1\|588439_591967_-	DEAD/DEAH box helicase	H8ZJC9	Ostreococcus_tauri_virus	1.0e-36	28.6
WP_010082157.1\|592660_593422_+	NTP transferase domain-containing protein	A0A2K9L4K9	Tupanvirus	4.0e-15	28.8
WP_006280064.1\|593553_594513_+	NAD(P)-dependent oxidoreductase	E3T4Y8	Cafeteria_roenbergensis_virus	3.7e-18	28.5
WP_010962711.1\|594469_596806_+	glycosyltransferase	NA	NA	NA	NA
WP_010962712.1\|596766_598461_+	hypothetical protein	NA	NA	NA	NA
WP_010962713.1\|598464_599454_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_010962714.1\|599454_601230_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.4e-31	35.0
WP_006280069.1\|601231_602281_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_006280070.1\|602277_603330_+	threonine aldolase family protein	NA	NA	NA	NA
WP_006280071.1\|603457_604603_+	MFS transporter	NA	NA	NA	NA
WP_006280072.1\|604620_605928_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.3e-70	34.5
WP_006280073.1\|605992_606907_-	DMT family transporter	NA	NA	NA	NA
WP_010962716.1\|607390_608302_-	helix-turn-helix domain-containing protein	A0A1B2LRR7	Wolbachia_phage	4.2e-88	58.7
WP_010962717.1\|608327_609236_-	helix-turn-helix transcriptional regulator	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	2.6e-82	57.2
WP_006280787.1\|610544_611201_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	2.0e-68	60.5
WP_010962718.1\|611370_612282_-	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	4.5e-82	61.3
WP_010962719.1\|612411_613308_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.0e-130	79.8
WP_010082266.1\|613308_613848_+	hypothetical protein	D9I601	Acinetobacter_virus	2.4e-22	36.5
WP_041580637.1\|614550_616980_-	hypothetical protein	NA	NA	NA	NA
WP_010962721.1\|617222_618647_+	cytoplasmic incompatibility factor CifA	NA	NA	NA	NA
WP_010962722.1\|618722_622223_+	cytoplasmic incompatibility factor CifB	NA	NA	NA	NA
WP_010962723.1\|623342_626243_+	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	1.1e-94	39.3
WP_010962724.1\|626649_628119_-	recombinase family protein	Q9JML1	Wolbachia_phage	1.4e-242	85.4
WP_010962725.1\|628112_628553_-	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	2.9e-63	89.9
WP_010962726.1\|628565_629024_-	ankyrin repeat domain-containing protein	Q9JML3	Wolbachia_phage	1.7e-37	80.4
WP_041580639.1\|629049_629784_-	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	4.4e-80	83.3
WP_010962728.1\|629951_631112_-	hypothetical protein	A0A1B2LRQ8	Wolbachia_phage	9.2e-189	80.8
WP_010962729.1\|631111_631903_-\|plate	baseplate J/gp47 family protein	Q9JML6	Wolbachia_phage	1.9e-113	78.2
WP_007552425.1\|631905_632241_-	GPW/gp25 family protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	8.3e-42	80.2
WP_010082105.1\|632243_632498_-	PAAR domain-containing protein	Q75QM1	Wolbachia_phage	1.4e-12	69.6
WP_010962731.1\|632505_632970_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	2.0e-70	86.4
WP_010962732.1\|632956_633433_-	hypothetical protein	Q75QM3	Wolbachia_phage	3.2e-63	79.1
WP_038228285.1\|633429_633945_-\|tail	phage tail protein	A0A1B2LRS9	Wolbachia_phage	1.7e-57	67.1
WP_099606204.1\|634724_635556_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_080717620.1\|635580_635745_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_167513692.1\|635734_635899_-	hypothetical protein	NA	NA	NA	NA
WP_095866567.1\|635983_636325_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_038198869.1\|636346_636631_-\|transposase	transposase	NA	NA	NA	NA
WP_010962735.1\|636773_638294_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_010962736.1\|638559_639294_+	3-oxoacyl-[acyl-carrier-protein] reductase	F2NZ40	Diadromus_pulchellus_ascovirus	6.3e-10	25.7
WP_022626321.1\|639389_639725_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_010962738.1\|639746_641027_-\|protease	M48 family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_5

921235 : 976186

Bacillus_phage(13.33%)

tRNA,transposase,portal,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007549940.1\|921235_921439_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007549942.1\|921454_921601_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_081420825.1\|921543_921855_+\|transposase	transposase	NA	NA	NA	NA
WP_010962951.1\|922376_924293_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	7.2e-114	37.9
WP_010082321.1\|924420_924849_-	hypothetical protein	NA	NA	NA	NA
WP_010962952.1\|925041_925629_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_010962953.1\|925619_925928_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_022626390.1\|925924_927772_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_010962955.1\|927775_929218_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_010962956.1\|929214_930579_+	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA
WP_010082374.1\|930596_931640_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_010962957.1\|931636_931774_+	hypothetical protein	NA	NA	NA	NA
WP_010082373.1\|931757_932150_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_010082372.1\|932222_932597_-	hypothetical protein	NA	NA	NA	NA
WP_010082371.1\|932694_933180_-	hypothetical protein	NA	NA	NA	NA
WP_022626392.1\|933221_934697_-	hypothetical protein	NA	NA	NA	NA
WP_010962959.1\|935418_936672_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_006279610.1\|936700_937219_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.4e-08	33.8
WP_010962960.1\|937231_939133_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	5.8e-132	39.7
WP_010962961.1\|939125_939413_-	hypothetical protein	NA	NA	NA	NA
WP_022626393.1\|939528_940011_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_010082336.1\|940142_941669_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_010962962.1\|941972_942989_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	2.7e-19	28.6
WP_010082311.1\|943549_943720_-	hypothetical protein	NA	NA	NA	NA
WP_010962965.1\|943831_944788_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_010962966.1\|944780_945818_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_010962967.1\|945828_946011_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_010962968.1\|946921_947704_+	ABC transporter permease	NA	NA	NA	NA
WP_006279859.1\|947696_948398_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	3.0e-25	35.7
WP_010962969.1\|948718_949216_+	hypothetical protein	NA	NA	NA	NA
WP_010962970.1\|949288_950452_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_010962971.1\|950731_951175_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-28	76.8
WP_173862902.1\|951423_951567_+	hypothetical protein	NA	NA	NA	NA
WP_010962767.1\|951604_953152_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.9e-131	49.6
WP_010962972.1\|953148_953949_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	3.6e-51	59.4
WP_010962973.1\|953983_955231_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	6.7e-36	38.7
WP_153296798.1\|955321_955462_-	hypothetical protein	NA	NA	NA	NA
WP_010962974.1\|955517_956936_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_010962975.1\|957153_957651_+	hypothetical protein	NA	NA	NA	NA
WP_010962976.1\|957904_958612_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_010962977.1\|958611_959391_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_038228226.1\|959417_960428_-	hypothetical protein	NA	NA	NA	NA
WP_010962979.1\|960487_963064_-	DNA polymerase I	A0A1B1IST8	uncultured_Mediterranean_phage	3.0e-46	31.7
WP_010082072.1\|963278_963443_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|963435_963597_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_099606206.1\|963600_964035_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-09	36.4
WP_081420826.1\|964019_964322_-\|transposase	transposase	NA	NA	NA	NA
WP_010082068.1\|964554_965361_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010962980.1\|965366_966011_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_010962981.1\|966408_966759_-	hypothetical protein	NA	NA	NA	NA
WP_010962982.1\|966879_968547_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	2.6e-88	36.2
WP_010962983.1\|968555_970490_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_010962984.1\|970903_972391_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_010962985.1\|972394_974938_+	hypothetical protein	NA	NA	NA	NA
WP_010962986.1\|974992_976186_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	5.7e-85	44.4

Anti-CRISPR protein detection

Acr_ID: NC_002978.6|WP_010962494.1|275578_276469_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_002978.6|WP_010962494.1|275578_276469_+|hypothetical-protein

275578_276469_+

296 aa aa

197425-391659

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_002978_5	Orphan	5.1\|522089\|51\|NC_002978\|CRISPRCasFinder	522089-522139	51	341291-341341	2
NC_002978_8	Orphan	8.1\|950570\|51\|NC_002978\|CRISPRCasFinder	950570-950620	51	341291-341341	2
NC_002978_7	Orphan	7.1\|854874\|49\|NC_002978\|CRISPRCasFinder	854874-854922	49	380037-379989	0

1. spacer 5.1|522089|51|NC_002978|CRISPRCasFinder matches to NC_002978 position: 341291-341341, mismatch: 2

tggtatgacggttaagtaattcgtcatcccgctgcttgttagcgggatcta	CRISPR spacer
tggtatgacagttaagtaattcgtcatcccgctacttgttagcgggatcta	Protospacer
*********.***********************.*****************

2. spacer 8.1|950570|51|NC_002978|CRISPRCasFinder matches to NC_002978 position: 341291-341341, mismatch: 2

tggtatgacggttaagtaattcgtcatcccgctgcttgttagcgggatcta	CRISPR spacer
tggtatgacagttaagtaattcgtcatcccgctacttgttagcgggatcta	Protospacer
*********.***********************.*****************

3. spacer 7.1|854874|49|NC_002978|CRISPRCasFinder matches to NC_002978 position: 380037-379989, mismatch: 0

tgacggtatgacggttcgcgcggtggcatgacctcgtcatcccgctact	CRISPR spacer
tgacggtatgacggttcgcgcggtggcatgacctcgtcatcccgctact	Protospacer
*************************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_002978

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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