CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_006856	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 plasmid pSC138, complete sequence	0 crisprs	NA	0	2
NC_006855	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 plasmid pSCV50, complete sequence	0 crisprs	cas14j	0	1
NC_006905	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete sequence	2 crisprs	WYL,DinG,cas3,cas14j,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK	5	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5813 : 58336

Escherichia_phage(43.48%)

integrase,transposase

attL 11322:11381|attR 46478:47299

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001138073.1\|5813_8786_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_001011939.1\|10013_10655_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001239317.1\|10804_11305_-	hypothetical protein	NA	NA	NA	NA
11322:11381	attL	NA	NA	NA	NA
WP_001067855.1\|11384_12089_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001774155.1\|12954_13440_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	3.5e-49	86.2
WP_001067855.1\|13479_14184_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000105636.1\|15841_17536_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|17553_17916_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000993386.1\|17912_18149_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001300294.1\|18184_18853_+	EAL domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|20242_20947_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|21136_21952_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_024131417.1\|22102_22822_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.9e-137	99.1
WP_000845054.1\|23419_24433_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001083725.1\|24577_25075_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|25186_25477_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|25482_26274_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|26437_26785_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|26778_27618_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|27745_28246_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001381192.1\|28214_29207_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_001067855.1\|29384_30089_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000238872.1\|31623_32112_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_001245143.1\|32104_33088_-	hypothetical protein	NA	NA	NA	NA
WP_000891983.1\|33091_34006_-	response regulator	NA	NA	NA	NA
WP_187148225.1\|34319_34475_+	hypothetical protein	NA	NA	NA	NA
WP_001067858.1\|34486_35191_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_011264039.1\|35249_35489_+	macrolide transporter	A0A2K5B2B5	Erysipelothrix_phage	9.5e-08	46.2
WP_000612791.1\|35634_36498_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
WP_001354008.1\|36535_36781_+	GrpB family protein	NA	NA	NA	NA
WP_000034420.1\|37249_38041_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
WP_109023896.1\|38043_38319_-	hypothetical protein	NA	NA	NA	NA
WP_000800531.1\|39220_39553_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
WP_001206316.1\|39722_40514_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000095725.1\|40606_41866_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
WP_001261740.1\|42127_42919_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000050382.1\|42976_43585_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_001456218.1\|43680_44523_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA
WP_000845048.1\|44689_45703_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|45905_46256_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|46540_47245_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|47250_47391_+	hypothetical protein	NA	NA	NA	NA
46478:47299	attR	NA	NA	NA	NA
WP_001446887.1\|47876_48614_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|48610_48835_+	hypothetical protein	NA	NA	NA	NA
WP_000954592.1\|48956_49133_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000134999.1\|50173_50815_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_001067855.1\|51972_52677_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001055569.1\|52736_53264_-	conjugal transfer protein TraQ	NA	NA	NA	NA
WP_001493811.1\|53263_53968_-	IncI1-type conjugal transfer protein TraP	NA	NA	NA	NA
WP_011264042.1\|53967_55257_-	conjugal transfer protein TraO	NA	NA	NA	NA
WP_001191880.1\|55259_56243_-	IncI1-type conjugal transfer protein TraN	NA	NA	NA	NA
WP_000138552.1\|56253_56946_-	DotI/IcmL family type IV secretion protein	NA	NA	NA	NA
WP_001055900.1\|56942_57290_-	conjugal transfer protein	NA	NA	NA	NA
WP_001067858.1\|57631_58336_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

DBSCAN-SWA_2

119642 : 128444

Escherichia_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000331736.1\|119642_120368_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.4e-40	42.2
WP_000750474.1\|120467_120878_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000208727.1\|120980_121940_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000633445.1\|122085_123174_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	9.7e-124	61.7
WP_001067852.1\|123236_123941_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	4.0e-139	99.6
WP_000557466.1\|124204_125278_-	hypothetical protein	NA	NA	NA	NA
WP_000550473.1\|125321_125471_-	hypothetical protein	NA	NA	NA	NA
WP_000534857.1\|125812_126052_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	2.0e-18	54.4
WP_000323025.1\|126051_126339_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_001531258.1\|126642_127425_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.1e-136	96.5
WP_000627495.1\|127421_128444_-\|transposase	IS21-like element ISSen3 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-174	85.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_006855

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35264 : 42168

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000925627.1\|35264_35687_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
WP_001541560.1\|35686_36961_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.7e-154	63.7
WP_000064274.1\|37042_38017_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	5.1e-84	53.2
WP_000427676.1\|38016_39222_-	AAA family ATPase	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000728917.1\|39636_40578_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
WP_001541562.1\|40609_41176_-	DUF2913 family protein	NA	NA	NA	NA
WP_001541563.1\|41232_41568_-	hypothetical protein	NA	NA	NA	NA
WP_001541564.1\|41751_42168_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_006905

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CRISPR-Cas detection and classification

Crispr_ID: NC_006905_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006905_1

3031533-3031805

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
GTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

4 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of NC_006905_1

>merge|NC_006905|1|3031533-3031805|CRISPRCasFinder,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCCGCGCAAATCGTCATGATTTAATTGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGAAGATATTGAAAGCGCCCAATCTTCCCAGCGGTTTATCCCCGCTAGCGCGGGGAACACCCAGTGTGCTGGAGTGAGGCGTGAATATGCAGCAGTTTATCCCCGCTAGCGCGGGGAACAC

>NC_006905|1|1|3031533-3031805|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCGCGCAAATCGTCATGATTTAATTGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGAAGATATTGAAAGCGCCCAATCTTCCCAG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CCAGTGTGCTGGAGTGAGGCGTGAATATGCAG
CAGTTTATCCCCGCTAGCGCGGGGAACAC

>NC_006905|1|1|3031535-3031805|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCG
GTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCGCGCAAATCGTCATGATTTAATTGCGTCG
GTTTATCCCCGCTGGCGCGGGGAACAC	TGGAAGATATTGAAAGCGCCCAATCTTCCCAGCG
GTTTATCCCCGCTAGCGCGGGGAACAC	CCAGTGTGCTGGAGTGAGGCGTGAATATGCAGCA
GTTTATCCCCGCTAGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006905.1\|WP_000517480.1\|3026395_3026707_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_006905.1\|WP_001540809.1\|3041836_3042571_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_006905.1\|WP_001221538.1\|3023399_3024161_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_006905.1\|WP_000144833.1\|3032194_3033115_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_006905.1\|WP_001518648.1\|3031901_3032195_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_006905.1\|WP_011264375.1\|3042618_3044358_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_006905.1\|WP_001092261.1\|3027863_3029303_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_006905.1\|WP_011264373.1\|3024141_3025191_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_006905.1\|WP_001540805.1\|3035572_3036121_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_006905.1\|WP_001540803.1\|3033111_3033762_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_006905.1\|WP_011264374.1\|3040795_3041749_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_006905.1\|WP_001540804.1\|3033743_3034490_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_006905.1\|WP_000741645.1\|3025666_3026377_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_006905.1\|WP_000372384.1\|3029312_3030221_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_006905.1\|WP_001540800.1\|3025187_3025667_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_006905.1\|WP_000490481.1\|3030471_3031518_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_006905.1\|WP_023235206.1\|3026897_3027221_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_006905.1\|WP_001173659.1\|3027271_3027877_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_006905.1\|WP_000210926.1\|3044357_3046157_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_006905.1\|WP_000206408.1\|3034500_3035559_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NC_006905.1\|WP_000517480.1\|3026395_3026707_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_006905.1\|WP_001540809.1\|3041836_3042571_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.32701e-138
NC_006905.1\|WP_001221538.1\|3023399_3024161_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_006905.1\|WP_000144833.1\|3032194_3033115_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157
NC_006905.1\|WP_001518648.1\|3031901_3032195_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NC_006905.1\|WP_011264375.1\|3042618_3044358_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_006905.1\|WP_001092261.1\|3027863_3029303_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_006905.1\|WP_011264373.1\|3024141_3025191_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_006905.1\|WP_001540805.1\|3035572_3036121_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.28593e-32
NC_006905.1\|WP_001540803.1\|3033111_3033762_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.59402e-74
NC_006905.1\|WP_011264374.1\|3040795_3041749_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_006905.1\|WP_001540804.1\|3033743_3034490_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.30439e-47
NC_006905.1\|WP_000741645.1\|3025666_3026377_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.74134e-119
NC_006905.1\|WP_000372384.1\|3029312_3030221_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_006905.1\|WP_001540800.1\|3025187_3025667_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.70783e-104
NC_006905.1\|WP_000490481.1\|3030471_3031518_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_006905.1\|WP_023235206.1\|3026897_3027221_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.11782e-47
NC_006905.1\|WP_001173659.1\|3027271_3027877_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
NC_006905.1\|WP_000210926.1\|3044357_3046157_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_006905.1\|WP_000206408.1\|3034500_3035559_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.05003e-136

>NC_006905.1|WP_000490481.1|3030471_3031518_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_006905.1|WP_000372384.1|3029312_3030221_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_006905.1|WP_001092261.1|3027863_3029303_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVGYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_006905.1|WP_001173659.1|3027271_3027877_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_006905.1|WP_023235206.1|3026897_3027221_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFMSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIVLHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_006905.1|WP_000517480.1|3026395_3026707_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_006905.1|WP_000741645.1|3025666_3026377_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPVLVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_006905.1|WP_001540800.1|3025187_3025667_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPRMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_006905.1|WP_011264373.1|3024141_3025191_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRGLINTMGDYAHIAE
>NC_006905.1|WP_001221538.1|3023399_3024161_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_006905.1|WP_001518648.1|3031901_3032195_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NC_006905.1|WP_000144833.1|3032194_3033115_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NC_006905.1|WP_001540803.1|3033111_3033762_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVECGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NC_006905.1|WP_001540804.1|3033743_3034490_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLRASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_006905.1|WP_000206408.1|3034500_3035559_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKNVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NC_006905.1|WP_001540805.1|3035572_3036121_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQGFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NC_006905.1|WP_011264374.1|3040795_3041749_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVSSQSNIKDILNISDDAVIESMSREERQLFLQIYEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_006905.1|WP_001540809.1|3041836_3042571_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEINAQLETLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLATQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_006905.1|WP_011264375.1|3042618_3044358_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDQLIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWDNLNCRMASV
>NC_006905.1|WP_000210926.1|3044357_3046157_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGMLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY

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Crispr_ID: NC_006905_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006905_2

3049243-3049698

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTNGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

7 spacers

cse2gr11,cas7,cas5

The CRISPR arrays of NC_006905_2

>merge|NC_006905|2|3049243-3049698|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACGGCTTTGGCTTCTTCACTCATATTTATTTGACCGGTTTATCCCCGCTAGCGCGGGGAACACACCCGATGACGACAGCAGCTATATCTCCAGTGCGGTTTATCCCCGCTAGCGCGGGGAACACCTCAGCAGGCTGGAGGAGATGATCAAAAATGGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCGCCACGCCTATACCATCCGAGTTTTGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACACCACTAAGGGTTTCAAAATGACTACTAATTTCGGTTTATCCCCGCTCGCGCGGGGAACACCGCGCCAGTGCCAATGTGAGCTGGCGTTATTACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_006905|2|2|3049243-3049698|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCTTTGGCTTCTTCACTCATATTTATTTGAC
CGGTTTATCCCCGCTAGCGCGGGGAACAC	ACCCGATGACGACAGCAGCTATATCTCCAGTG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CTCAGCAGGCTGGAGGAGATGATCAAAAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGCCACGCCTATACCATCCGAGTTTTGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCACTAAGGGTTTCAAAATGACTACTAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCGCCAGTGCCAATGTGAGCTGGCGTTATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_006905|2|1|3049243-3049698|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCTTTGGCTTCTTCACTCATATTTATTTGAC
CGGTTTATCCCCGCTAGCGCGGGGAACAC	ACCCGATGACGACAGCAGCTATATCTCCAGTG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CTCAGCAGGCTGGAGGAGATGATCAAAAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGCCACGCCTATACCATCCGAGTTTTGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCACTAAGGGTTTCAAAATGACTACTAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCGCCAGTGCCAATGTGAGCTGGCGTTATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_006905|2|2|3049304-3049698|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCTTTGGCTTCTTCACTCATATTTATTTGAC
CGGTTTATCCCCGCTAGCGCGGGGAACAC	ACCCGATGACGACAGCAGCTATATCTCCAGTG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	CTCAGCAGGCTGGAGGAGATGATCAAAAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGCCACGCCTATACCATCCGAGTTTTGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCACTAAGGGTTTCAAAATGACTACTAATTT
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGCGCCAGTGCCAATGTGAGCTGGCGTTATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006905.1\|WP_001540809.1\|3041836_3042571_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_006905.1\|WP_000108313.1\|3046580_3046943_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_006905.1\|WP_001079644.1\|3060615_3061152_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NC_006905.1\|WP_000206408.1\|3034500_3035559_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_006905.1\|WP_011264375.1\|3042618_3044358_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_006905.1\|WP_000981804.1\|3056122_3058822_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NC_006905.1\|WP_110301500.1\|3047937_3049193_+\|IS3-like-element-ISSen1-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_006905.1\|WP_000210863.1\|3052182_3053820_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_006905.1\|WP_000036734.1\|3050801_3052100_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_006905.1\|WP_011264374.1\|3040795_3041749_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_006905.1\|WP_001540804.1\|3033743_3034490_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_006905.1\|WP_023235211.1\|3059627_3060134_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NC_006905.1\|WP_001044459.1\|3058834_3059608_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NC_006905.1\|WP_001540805.1\|3035572_3036121_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_006905.1\|WP_000210451.1\|3054047_3054848_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_006905.1\|WP_001540812.1\|3049994_3050666_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_006905.1\|WP_001540810.1\|3047032_3047830_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_006905.1\|WP_000832396.1\|3060148_3060619_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NC_006905.1\|WP_000210926.1\|3044357_3046157_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_006905.1\|WP_000842512.1\|3055455_3056043_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169

Protein	Function_ID	Function_description	E-value
NC_006905.1\|WP_001540809.1\|3041836_3042571_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.32701e-138
NC_006905.1\|WP_000108313.1\|3046580_3046943_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_006905.1\|WP_001079644.1\|3060615_3061152_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.83046e-121
NC_006905.1\|WP_000206408.1\|3034500_3035559_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.05003e-136
NC_006905.1\|WP_011264375.1\|3042618_3044358_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_006905.1\|WP_000981804.1\|3056122_3058822_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NC_006905.1\|WP_110301500.1\|3047937_3049193_+\|IS3-like-element-ISSen1-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.55921e-41
NC_006905.1\|WP_000210863.1\|3052182_3053820_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_006905.1\|WP_000036734.1\|3050801_3052100_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_006905.1\|WP_011264374.1\|3040795_3041749_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_006905.1\|WP_001540804.1\|3033743_3034490_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.30439e-47
NC_006905.1\|WP_023235211.1\|3059627_3060134_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	2.99855e-105
NC_006905.1\|WP_001044459.1\|3058834_3059608_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NC_006905.1\|WP_001540805.1\|3035572_3036121_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.28593e-32
NC_006905.1\|WP_000210451.1\|3054047_3054848_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_006905.1\|WP_001540812.1\|3049994_3050666_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	4.64989e-154
NC_006905.1\|WP_001540810.1\|3047032_3047830_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.65501e-102
NC_006905.1\|WP_000832396.1\|3060148_3060619_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NC_006905.1\|WP_000210926.1\|3044357_3046157_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_006905.1\|WP_000842512.1\|3055455_3056043_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100

>NC_006905.1|WP_110301500.1|3047937_3049193_+|IS3-like-element-ISSen1-family-transposase
MMTEFKRPQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWLRKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAEFFESVINVLKNDYGVSVGKKAARQVLTQSQAPKITVTRACQFLGHSRQAWYQYNTRCNKRQEHHAQVLDFVARTRCRQPRIGTRKLHYLLNMQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKPGPEQVTALEPEQVWVADITYLPLRSGTAYLSLVTDACSRKIVGYHVGENLQTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSMTDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERPHQALKYKTPDDVHQAFYRQKTVNLYQD
>NC_006905.1|WP_001540810.1|3047032_3047830_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_006905.1|WP_000108313.1|3046580_3046943_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_006905.1|WP_000210926.1|3044357_3046157_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGMLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NC_006905.1|WP_011264375.1|3042618_3044358_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDQLIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWDNLNCRMASV
>NC_006905.1|WP_001540809.1|3041836_3042571_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEINAQLETLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLATQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_006905.1|WP_011264374.1|3040795_3041749_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVSSQSNIKDILNISDDAVIESMSREERQLFLQIYEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_006905.1|WP_001540805.1|3035572_3036121_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQGFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NC_006905.1|WP_000206408.1|3034500_3035559_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKNVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NC_006905.1|WP_001540804.1|3033743_3034490_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLRASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_006905.1|WP_001540812.1|3049994_3050666_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALGELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_006905.1|WP_000036734.1|3050801_3052100_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_006905.1|WP_000210863.1|3052182_3053820_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_006905.1|WP_000210451.1|3054047_3054848_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_006905.1|WP_000842512.1|3055455_3056043_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NC_006905.1|WP_000981804.1|3056122_3058822_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNDSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVANDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NC_006905.1|WP_001044459.1|3058834_3059608_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NC_006905.1|WP_023235211.1|3059627_3060134_+|fimbrial-protein
MTMLTRWKILVLLCGGFVTGTEAAGTKIVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NC_006905.1|WP_000832396.1|3060148_3060619_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NC_006905.1|WP_001079644.1|3060615_3061152_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGIEDSTLPGLLALEPSSEASGFAIGVEMAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006905_2	2.6\|3049577\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049577-3049608	32	KX853513	Uncultured virus isolate Rctr41k, partial genome	9657-9688	6	0.812
NC_006905_2	2.4\|3049455\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049455-3049486	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	234396-234427	8	0.75
NC_006905_2	2.4\|3049455\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049455-3049486	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	85616-85647	8	0.75
NC_006905_1	1.4\|3031745\|32\|NC_006905\|CRISPRCasFinder	3031745-3031776	32	NZ_CP022021	Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence	72705-72736	9	0.719
NC_006905_1	1.4\|3031745\|32\|NC_006905\|CRISPRCasFinder	3031745-3031776	32	NZ_CP041212	Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence	56906-56937	9	0.719
NC_006905_1	1.4\|3031745\|32\|NC_006905\|CRISPRCasFinder	3031745-3031776	32	NC_022045	Listeria monocytogenes strain N1-011A plasmid, complete sequence	76500-76531	9	0.719
NC_006905_1	1.4\|3031745\|32\|NC_006905\|CRISPRCasFinder	3031745-3031776	32	NZ_CP014251	Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence	30149-30180	9	0.719
NC_006905_1	1.4\|3031745\|32\|NC_006905\|CRISPRCasFinder	3031745-3031776	32	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	23028-23059	9	0.719
NC_006905_1	1.4\|3031745\|32\|NC_006905\|CRISPRCasFinder	3031745-3031776	32	NZ_MH382833	Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence	11753-11784	9	0.719
NC_006905_1	1.4\|3031745\|32\|NC_006905\|CRISPRCasFinder	3031745-3031776	32	NZ_CP020834	Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence	35903-35934	9	0.719
NC_006905_1	1.1\|3031562\|32\|NC_006905\|CRISPRCasFinder	3031562-3031593	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NC_006905_1	1.1\|3031562\|32\|NC_006905\|CRISPRCasFinder	3031562-3031593	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NC_006905_2	2.2\|3049333\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049333-3049364	32	NZ_CP046164	Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence	362233-362264	10	0.688
NC_006905_2	2.2\|3049333\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049333-3049364	32	NZ_CP046067	Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence	110732-110763	10	0.688
NC_006905_2	2.2\|3049333\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049333-3049364	32	NZ_CP009266	Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence	36435-36466	10	0.688
NC_006905_2	2.2\|3049333\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049333-3049364	32	NZ_CP045357	Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence	217923-217954	10	0.688
NC_006905_2	2.2\|3049333\|32\|NC_006905\|CRISPRCasFinder,CRT,PILER-CR	3049333-3049364	32	MN693596	Marine virus AFVG_25M324, complete genome	45600-45631	10	0.688

1. spacer 2.6|3049577|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to KX853513 (Uncultured virus isolate Rctr41k, partial genome) position: , mismatch: 6, identity: 0.812

accactaagggtttcaaaatgactactaattt	CRISPR spacer
acagaaaaggagttcaaaatgactactaattt	Protospacer
** .  ****. ********************

2. spacer 2.4|3049455|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctcagcaggctggaggagatgatcaaaaatgg----	CRISPR spacer
ctcagcaggctggaagagacgatc----gtgttacc	Protospacer
**************.****.****    .**

3. spacer 2.4|3049455|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 8, identity: 0.75

ctcagcaggctggaggagatgatcaaaaatgg	CRISPR spacer
atgataaggctggaagagatgaacaaaaatta	Protospacer
 * *  ********.******* ******* .

4. spacer 1.4|3031745|32|NC_006905|CRISPRCasFinder matches to NZ_CP022021 (Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

5. spacer 1.4|3031745|32|NC_006905|CRISPRCasFinder matches to NZ_CP041212 (Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

6. spacer 1.4|3031745|32|NC_006905|CRISPRCasFinder matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

7. spacer 1.4|3031745|32|NC_006905|CRISPRCasFinder matches to NZ_CP014251 (Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

8. spacer 1.4|3031745|32|NC_006905|CRISPRCasFinder matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

9. spacer 1.4|3031745|32|NC_006905|CRISPRCasFinder matches to NZ_MH382833 (Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

10. spacer 1.4|3031745|32|NC_006905|CRISPRCasFinder matches to NZ_CP020834 (Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence) position: , mismatch: 9, identity: 0.719

ccagt--gtgctggagtgaggcgtgaatatgcag	CRISPR spacer
--aatcgttgttggagtgtggcgtgaatatggca	Protospacer
  *.*   **.******* ************  .

11. spacer 1.1|3031562|32|NC_006905|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

12. spacer 1.1|3031562|32|NC_006905|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

13. spacer 2.2|3049333|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046164 (Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence) position: , mismatch: 10, identity: 0.688

ggctttggcttcttcactcatatttatttgac	CRISPR spacer
agctttggcatcttcactgatattggctacgg	Protospacer
.******** ******** ***** ..*  .

14. spacer 2.2|3049333|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046067 (Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence) position: , mismatch: 10, identity: 0.688

ggctttggcttcttcactcatatttatttgac	CRISPR spacer
agctttggcatcttcactgatattggctacgg	Protospacer
.******** ******** ***** ..*  .

15. spacer 2.2|3049333|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 10, identity: 0.688

ggctttggcttcttcactcatatttatttgac	CRISPR spacer
agctttggcatcttcactgatattggctacgg	Protospacer
.******** ******** ***** ..*  .

16. spacer 2.2|3049333|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045357 (Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence) position: , mismatch: 10, identity: 0.688

ggctttggcttcttcactcatatttatttgac	CRISPR spacer
agctttggcatcttcactgatattggctacgg	Protospacer
.******** ******** ***** ..*  .

17. spacer 2.2|3049333|32|NC_006905|CRISPRCasFinder,CRT,PILER-CR matches to MN693596 (Marine virus AFVG_25M324, complete genome) position: , mismatch: 10, identity: 0.688

ggctttggcttcttcactcatatttatttgac	CRISPR spacer
ctcttttgcttcttcactcatttttgctccta	Protospacer
  **** ************** ***..*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

368941 : 409983

Salmonella_phage(51.79%)

terminase,holin,lysis,coat,portal,integrase,protease

attL 372787:372832|attR 413191:413236

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001539157.1\|368941_369994_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	4.8e-112	58.2
WP_001285275.1\|370275_371379_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_000893222.1\|371390_372641_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.2e-98	48.2
372787:372832	attL	NA	NA	NA	NA
WP_001539161.1\|372846_374010_-\|integrase	site-specific integrase	A0A220NQU7	Salmonella_phage	3.8e-227	98.2
WP_001283605.1\|374239_374875_-	DUF5420 family protein	A0A075B8I7	Enterobacteria_phage	2.5e-108	89.1
WP_001539163.1\|374945_376121_-	DUF551 domain-containing protein	A0A1U9HZ41	Salmonella_phage	4.2e-48	95.0
WP_001539165.1\|376117_376579_-	hypothetical protein	NA	NA	NA	NA
WP_001539166.1\|376575_377097_-	DUF262 domain-containing protein	Q8HAA5	Salmonella_phage	3.1e-96	100.0
WP_001539168.1\|377093_377327_-	hypothetical protein	S4TVX5	Salmonella_phage	1.2e-12	47.7
WP_001539169.1\|377323_377701_-	hypothetical protein	I6R9B7	Salmonella_phage	4.2e-58	94.3
WP_023235266.1\|377697_378324_-	HNH endonuclease	K7PHS8	Enterobacteria_phage	8.1e-107	97.9
WP_023235267.1\|378310_378487_-	DUF2737 family protein	K7PL43	Enterobacteria_phage	3.4e-23	93.1
WP_023235268.1\|378497_378791_-	DUF2856 family protein	A0A1V0E5L7	Salmonella_phage	1.9e-21	57.7
WP_001539174.1\|378808_379357_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	5.8e-101	95.6
WP_001539175.1\|379365_379872_-	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	1.1e-85	92.3
WP_001046989.1\|379872_380580_-	recombinase	A0A192Y857	Salmonella_phage	4.1e-131	94.5
WP_000902090.1\|380576_380720_-	hypothetical protein	A0A1R3Y5R4	Salmonella_virus	9.3e-19	97.9
WP_000156731.1\|380709_380898_-	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_000141641.1\|380878_381037_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
WP_001539177.1\|381243_381444_-	hypothetical protein	A0A2H4FQS9	Salmonella_phage	1.6e-32	100.0
WP_001539178.1\|381512_381770_-	hypothetical protein	A0A2H4FRY7	Salmonella_phage	1.5e-22	98.0
WP_001539179.1\|381896_382118_-	hypothetical protein	A0A2H4FRY7	Salmonella_phage	5.3e-37	97.3
WP_001539180.1\|382198_382501_-	hypothetical protein	A0A0M3ULJ5	Salmonella_phage	5.9e-47	96.0
WP_023138238.1\|382869_383502_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	2.8e-30	43.0
WP_000447947.1\|383602_383818_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	1.1e-18	69.0
WP_000424138.1\|383926_384217_+	hypothetical protein	I6RSP4	Salmonella_phage	2.4e-45	100.0
WP_000166968.1\|384237_384399_+	hypothetical protein	I6R9C7	Salmonella_phage	1.0e-21	100.0
WP_001539182.1\|384385_385234_+	replication protein	C6ZR51	Salmonella_phage	7.0e-154	99.3
WP_001539183.1\|385341_387222_+	toprim domain-containing protein	I6S1U6	Salmonella_phage	0.0e+00	98.4
WP_001749496.1\|387222_387501_+	hypothetical protein	B9UDH9	Salmonella_phage	2.8e-43	90.2
WP_023235271.1\|387574_388015_+	recombination protein NinB	K7PGZ3	Enterobacteria_phage	1.3e-79	98.6
WP_011264202.1\|388011_388884_+	phosphoadenosine phosphosulfate reductase family protein	A0A0K2FIH3	Escherichia_phage	3.5e-177	99.7
WP_000113766.1\|389020_389203_+	NinE family protein	C6ZR57	Salmonella_phage	5.7e-29	100.0
WP_000566855.1\|389199_389376_+	protein ninF	A0A0M4S6T3	Salmonella_phage	1.9e-26	94.8
WP_001539188.1\|389631_390027_+	RusA family crossover junction endodeoxyribonuclease	A0A0M4REJ2	Salmonella_phage	3.4e-71	98.5
WP_000149925.1\|390023_390227_+	phage NinH family protein	A0A075B8J4	Enterobacteria_phage	7.2e-33	100.0
WP_000219132.1\|390207_390387_+	hypothetical protein	A0A1V0E5I7	Salmonella_phage	1.6e-23	98.3
WP_001539190.1\|390383_390902_+	DUF1133 family protein	A0A1R3Y5U9	Salmonella_virus	6.1e-92	97.1
WP_000783734.1\|391362_391686_+\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_001539192.1\|391669_392146_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	3.2e-87	98.7
WP_001539193.1\|392142_392580_+\|lysis	lysis protein	K7P710	Enterobacteria_phage	2.9e-71	97.9
WP_001072462.1\|392785_393274_+	GIY-YIG nuclease family protein	K7P7S3	Enterobacteria_phage	2.7e-86	98.8
WP_000807788.1\|393764_394007_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_023235274.1\|394042_394531_+	DNA-packaging protein	A0A0M3ULC0	Salmonella_phage	5.0e-88	99.4
WP_001539195.1\|394508_396008_+\|terminase	terminase large subunit	G5DA96	Enterobacteria_phage	9.1e-306	99.6
WP_001539196.1\|396008_398174_+\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	0.0e+00	99.6
WP_001539198.1\|398187_399099_+	scaffold protein	A0A2D1GLN7	Escherichia_phage	5.4e-160	99.3
WP_001539200.1\|399098_400394_+\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	5.2e-241	98.6
WP_023235276.1\|400438_400675_+	hypothetical protein	A0A2D1GLK1	Escherichia_phage	1.1e-24	78.4
WP_001539204.1\|400652_401153_+	DNA recombination protein RmuC	G8EYJ2	Enterobacteria_phage	3.6e-89	97.6
WP_001539206.1\|401153_402572_+	packaged DNA stabilization protein gp10	A0A2D1GM00	Escherichia_phage	1.5e-273	98.3
WP_001539207.1\|402575_403214_+	hypothetical protein	A0A088CPT1	Enterobacteria_phage	6.1e-86	95.3
WP_000627591.1\|403213_403669_+	DUF2824 family protein	B8K1I4	Salmonella_phage	2.0e-86	98.7
WP_001539209.1\|403671_404361_+	hypothetical protein	B9UDK9	Salmonella_phage	4.3e-93	92.6
WP_023235277.1\|404370_405723_+	phage DNA ejection protein	A0A220NR03	Salmonella_phage	1.4e-220	90.5
WP_001539213.1\|405722_407636_+	hypothetical protein	E7C9U6	Salmonella_phage	0.0e+00	98.9
WP_001539215.1\|407653_407983_-	hypothetical protein	NA	NA	NA	NA
WP_011264204.1\|408222_409983_+	right-handed parallel beta-helix repeat-containing protein	I6S5Y0	Salmonella_phage	7.4e-57	85.9
413191:413236	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1003632 : 1010945

Dickeya_phage(16.67%)

integrase,protease

attL 1004883:1004897|attR 1016133:1016147

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001539592.1\|1003632_1004751_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125882.1\|1004747_1006694_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.6e-39	43.1
1004883:1004897	attL	NA	NA	NA	NA
WP_000447499.1\|1006823_1007045_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1007368_1007689_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_001539593.1\|1007719_1009996_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.3
WP_001117984.1\|1010208_1010406_-	hypothetical protein	NA	NA	NA	NA
WP_001539594.1\|1010567_1010945_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
1016133:1016147	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1051962 : 1156840

Enterobacteria_phage(32.0%)

holin,tRNA,protease,lysis,portal,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110301500.1\|1051962_1053217_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	2.2e-18	34.5
WP_000551246.1\|1055696_1057445_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.2e-60	30.5
WP_001539607.1\|1057441_1058419_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_001539608.1\|1058462_1059695_+	YcaQ family DNA glycosylase	NA	NA	NA	NA
WP_000350061.1\|1059746_1059929_+	protein YcaR	NA	NA	NA	NA
WP_000011576.1\|1059925_1060672_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000436889.1\|1060882_1061776_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000899553.1\|1061755_1062532_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_001539611.1\|1062667_1063471_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1063463_1064786_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|1064766_1065471_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_001539613.1\|1070283_1072131_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357053.1\|1072390_1072939_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1072966_1073614_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011264240.1\|1073675_1074866_-	aspartate transaminase	NA	NA	NA	NA
WP_001539614.1\|1075050_1076148_-	porin OmpF	Q1MVN1	Enterobacteria_phage	7.0e-98	51.5
WP_000117871.1\|1076754_1078155_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	1.7e-80	34.9
WP_000762342.1\|1078355_1078817_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_001539615.1\|1079134_1080331_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893204.1\|1080594_1082031_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_024131270.1\|1082108_1083311_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001539617.1\|1083516_1084794_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.1e-248	99.8
WP_001237031.1\|1085128_1085368_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|1085410_1086568_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001539619.1\|1089582_1089933_-	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_000917562.1\|1089954_1090113_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_000373338.1\|1090511_1090718_+	hypothetical protein	K7P7I0	Enterobacteria_phage	1.6e-16	67.6
WP_000997167.1\|1090750_1091683_-	hypothetical protein	K7PGT0	Enterobacteria_phage	9.6e-88	53.2
WP_001539621.1\|1091679_1092153_-	hypothetical protein	K7PLT9	Enterobacteria_phage	2.5e-52	57.9
WP_001539622.1\|1092303_1092771_-	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	7.9e-67	84.5
WP_000145711.1\|1092784_1093012_+	helix-turn-helix domain-containing protein	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
WP_077905880.1\|1092977_1093352_+	hypothetical protein	S4TTD7	Salmonella_phage	2.1e-62	97.6
WP_011264243.1\|1093443_1094280_+	replication protein	K7PGT1	Enterobacteria_phage	3.5e-49	48.5
WP_000801767.1\|1094276_1094972_+	hypothetical protein	G8C7U6	Escherichia_phage	1.5e-56	45.9
WP_000664367.1\|1094985_1095783_+	hypothetical protein	A0A1R3Y5Q8	Salmonella_virus	1.7e-32	81.9
WP_001539628.1\|1096302_1096542_+	DinI family protein	H6WRY5	Salmonella_phage	3.3e-37	98.7
WP_000929802.1\|1096876_1097479_+	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_001096557.1\|1097687_1098299_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	3.6e-91	96.1
WP_000801757.1\|1098295_1098436_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_000993185.1\|1098432_1099113_+	antitermination protein	I6PDF8	Cronobacter_phage	1.2e-60	54.5
WP_001539630.1\|1099233_1099920_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.1
WP_077905918.1\|1100195_1100525_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.2e-55	99.1
WP_023234789.1\|1100508_1100961_+	lysozyme	A0A0M4R365	Salmonella_phage	3.9e-79	97.3
WP_001534723.1\|1100978_1101458_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	5.0e-56	77.7
WP_023234790.1\|1101665_1102040_+	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	3.9e-16	47.8
WP_000196190.1\|1104131_1104338_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_174565078.1\|1104451_1105864_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	4.7e-86	54.3
WP_000478859.1\|1105909_1106308_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1106304_1106634_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_077905919.1\|1106713_1109701_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.1e-265	62.1
WP_000978295.1\|1109697_1110030_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
WP_000725267.1\|1110128_1110626_+	Ail/Lom family outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1110742_1111276_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001539637.1\|1111365_1112061_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.8e-89	66.2
WP_000606351.1\|1112070_1112808_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_001576012.1\|1112705_1113410_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
WP_187148223.1\|1115955_1116831_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	1.1e-48	77.1
WP_000178849.1\|1116869_1117112_+	hypothetical protein	NA	NA	NA	NA
WP_001539638.1\|1117165_1119604_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	1.9e-90	63.3
WP_000143167.1\|1119603_1120185_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001539639.1\|1120749_1121628_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	2.2e-171	98.6
WP_000334547.1\|1122200_1122827_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_010989011.1\|1122895_1123195_-	hypothetical protein	NA	NA	NA	NA
WP_001539642.1\|1123179_1123866_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1124135_1124327_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_011264247.1\|1124753_1127366_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.4
WP_001539645.1\|1127573_1128584_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1128750_1129293_+	cell division protein ZapC	NA	NA	NA	NA
WP_001539646.1\|1129289_1130399_-	YcbX family protein	NA	NA	NA	NA
WP_001086477.1\|1130497_1132606_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_001539647.1\|1134540_1135794_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433416.1\|1135798_1137439_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_011264248.1\|1137435_1137999_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1138254_1138422_+	ribosome modulation factor	NA	NA	NA	NA
WP_001539648.1\|1138521_1139040_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001539649.1\|1139108_1140869_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1141054_1141507_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001539650.1\|1141578_1142631_-	porin OmpA	NA	NA	NA	NA
WP_000288731.1\|1142987_1143497_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001539651.1\|1143713_1144319_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950883.1\|1144305_1146459_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1146477_1146924_-	YccF domain-containing protein	NA	NA	NA	NA
WP_001539652.1\|1147047_1149102_+	DNA helicase IV	A7KV33	Bacillus_phage	2.9e-20	27.6
WP_000424187.1\|1149137_1149596_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847732.1\|1149690_1150353_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|1150526_1150940_+	CoA-binding protein	NA	NA	NA	NA
WP_001539653.1\|1150984_1151302_-	heat shock protein HspQ	NA	NA	NA	NA
WP_023234842.1\|1151359_1152571_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859416.1\|1152785_1153334_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548082.1\|1153359_1154139_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000072884.1\|1154187_1154469_+	acylphosphatase	NA	NA	NA	NA
WP_001539655.1\|1154465_1154795_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374046.1\|1154881_1155541_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_001539656.1\|1156159_1156840_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	2.8e-73	65.9

DBSCAN-SWA_4

1302952 : 1352248

Salmonella_phage(31.91%)

terminase,head,holin,tRNA,capsid,portal,integrase,transposase,tail

attL 1307007:1307025|attR 1357344:1357362

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001539735.1\|1302952_1304059_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476069.1\|1304112_1304574_-	NUDIX hydrolase	NA	NA	NA	NA
WP_000825957.1\|1304585_1304915_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_023234873.1\|1304911_1305493_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_001539738.1\|1305664_1306915_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
1307007:1307025	attL	NA	NA	NA	NA
WP_001539740.1\|1307026_1308154_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21925	Phage_21	1.2e-121	59.2
WP_001339197.1\|1308399_1309608_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_011264258.1\|1309794_1309944_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	5.3e-09	100.0
WP_001539741.1\|1310080_1310908_-	DUF2303 family protein	Q8HAA2	Salmonella_phage	1.2e-150	98.2
WP_001539742.1\|1310965_1311322_-	hypothetical protein	Q8HAA1	Salmonella_phage	2.5e-60	100.0
WP_001624554.1\|1311879_1312077_+	hypothetical protein	NA	NA	NA	NA
WP_001191666.1\|1313205_1313430_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_011264260.1\|1313458_1314013_+	hypothetical protein	A0A1C9II13	Salmonella_phage	9.0e-102	99.5
WP_001539746.1\|1314009_1316490_+	phage regulatory protein	Q8HA97	Salmonella_phage	1.4e-157	45.3
WP_000620702.1\|1316486_1316711_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_001539747.1\|1316707_1317526_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	9.5e-132	97.4
WP_023234881.1\|1317527_1318010_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.1e-84	97.5
WP_001539748.1\|1318009_1318663_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.6e-113	88.4
WP_001539749.1\|1318659_1319049_+	RusA family crossover junction endodeoxyribonuclease	K7PH72	Enterobacteria_phage	4.2e-61	86.8
WP_001539751.1\|1319065_1319926_+	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	4.6e-161	99.0
WP_001539752.1\|1319933_1320923_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.5e-192	98.8
WP_001539753.1\|1320937_1321516_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	7.1e-49	57.2
WP_001539755.1\|1321741_1322161_+	hypothetical protein	A0A291AWZ9	Escherichia_phage	6.0e-58	75.5
WP_001294873.1\|1322661_1323051_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	4.8e-41	72.5
WP_000226307.1\|1323037_1323319_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001539762.1\|1323318_1323933_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.3e-106	91.7
WP_001539764.1\|1323929_1324472_+	DUF2514 family protein	NA	NA	NA	NA
WP_023234883.1\|1324574_1325078_+	hypothetical protein	NA	NA	NA	NA
WP_001102154.1\|1325336_1325882_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	7.4e-56	79.1
WP_001539769.1\|1325853_1327785_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.8e-259	65.7
WP_000201415.1\|1327768_1327972_+	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000831820.1\|1327968_1329549_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.2e-188	62.8
WP_001539774.1\|1329538_1331035_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	9.6e-98	52.4
WP_001539777.1\|1331047_1331395_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.4e-20	53.8
WP_011264261.1\|1331449_1332478_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	6.6e-114	60.8
WP_001539780.1\|1332535_1332895_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_001539781.1\|1332905_1333289_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.7e-27	54.7
WP_001539782.1\|1333321_1334452_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	8.9e-213	97.9
WP_000677089.1\|1334557_1335136_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000033885.1\|1335132_1335534_+\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000971954.1\|1335541_1336288_+	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000479607.1\|1336338_1336734_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_077905885.1\|1336730_1337069_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	2.3e-31	62.4
WP_001539789.1\|1337040_1340082_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.5e-296	64.7
WP_000447370.1\|1340084_1340414_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
WP_001539790.1\|1340423_1341122_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	3.5e-103	75.4
WP_000662740.1\|1341128_1341866_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
WP_023236538.1\|1341763_1342411_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.1e-90	78.1
WP_011264263.1\|1342473_1345836_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.9
WP_000178849.1\|1345874_1346117_+	hypothetical protein	NA	NA	NA	NA
WP_011264264.1\|1346170_1348849_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1B0VFW4	Salmonella_phage	6.2e-156	67.1
WP_023234886.1\|1348863_1349382_+\|tail	tail fiber assembly protein	A0A1S6KZY8	Salmonella_phage	2.9e-46	63.4
WP_024131291.1\|1349944_1350181_+	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	5.5e-08	90.6
WP_001539798.1\|1350480_1350789_+	hypothetical protein	K7PGV5	Enterobacterial_phage	8.4e-25	55.1
WP_187148224.1\|1350919_1351969_-	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	2.1e-115	61.0
WP_001539801.1\|1351954_1352248_+	Bro-N domain-containing protein	B6SD57	Bacteriophage	1.7e-19	53.5
1357344:1357362	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2272255 : 2281424

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195340.1\|2272255_2274289_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
WP_001540418.1\|2274529_2274988_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-52	71.9
WP_000950413.1\|2275744_2276212_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2276258_2276978_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272854.1\|2276974_2278660_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	8.1e-279	91.3
WP_011264326.1\|2278882_2279614_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	8.5e-100	87.4
WP_001261696.1\|2279673_2279781_+	protein YohO	NA	NA	NA	NA
WP_000824849.1\|2279761_2280493_-	ABC transporter permease	NA	NA	NA	NA
WP_000569173.1\|2280476_2281424_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_6

2747232 : 2792833

Salmonella_phage(77.59%)

plate,head,holin,lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000790154.1\|2747232_2749032_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_071813888.1\|2749436_2750927_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	2.8e-254	98.4
WP_001540650.1\|2751744_2752161_-\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	1.0e-65	90.3
WP_011264352.1\|2752167_2753580_-	hypothetical protein	A0A1B0V7G4	Salmonella_phage	2.0e-206	81.9
WP_000049934.1\|2753579_2754260_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.2e-127	97.3
WP_001540652.1\|2754256_2755456_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	7.0e-216	98.5
WP_001540653.1\|2755456_2755810_-	hypothetical protein	A0A0M4R339	Salmonella_phage	1.6e-59	97.4
WP_001540654.1\|2755945_2756701_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.6e-104	78.5
WP_001540655.1\|2756764_2757550_-	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.3e-85	62.7
WP_001028071.1\|2757614_2758178_-	Bro-N domain-containing protein	H6WRU8	Salmonella_phage	4.5e-32	59.0
WP_000414162.1\|2758251_2758410_-	Arc family DNA-binding protein	A0A077KAX5	Edwardsiella_phage	2.1e-11	71.4
WP_000818611.1\|2758510_2758888_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	6.7e-16	75.4
WP_000826019.1\|2758894_2759230_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
WP_000042299.1\|2759226_2760258_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	3.3e-97	51.7
WP_000388505.1\|2760260_2760563_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
WP_000346977.1\|2760566_2761217_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.9e-56	60.6
WP_001540656.1\|2761216_2763169_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	4.0e-168	64.5
WP_001540657.1\|2763346_2763799_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	8.5e-58	77.2
WP_000535993.1\|2763802_2764246_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	6.0e-56	74.5
WP_001540658.1\|2764258_2765404_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.7e-163	74.5
WP_000389380.1\|2765407_2765971_-	hypothetical protein	A0A0M4R331	Salmonella_phage	7.6e-80	75.3
WP_001540659.1\|2765945_2766335_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	1.1e-66	96.9
WP_000008736.1\|2766321_2766876_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.8e-94	99.5
WP_001125676.1\|2766872_2767280_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.0e-70	95.6
WP_001040692.1\|2767245_2767614_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	5.7e-60	98.4
WP_001540662.1\|2767655_2768597_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.8e-177	99.0
WP_011264354.1\|2768608_2769106_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.3e-87	99.4
WP_001540664.1\|2769110_2770343_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	9.0e-227	98.5
WP_137075829.1\|2770357_2771095_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	1.1e-99	87.6
WP_001540667.1\|2770979_2772449_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	2.4e-279	99.0
WP_001540668.1\|2772448_2774071_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.3
WP_023235155.1\|2774073_2774703_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	2.7e-110	99.5
WP_001064345.1\|2774765_2775290_-	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	9.8e-90	96.5
WP_001540671.1\|2775507_2775957_-\|lysis	lysis protein	H6WRZ5	Salmonella_phage	2.0e-59	83.2
WP_000984586.1\|2775974_2776427_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_077905929.1\|2776410_2776740_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	6.4e-55	98.2
WP_001540676.1\|2777015_2777702_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	3.9e-131	98.7
WP_001540678.1\|2778062_2778512_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|2778647_2778773_-	hypothetical protein	NA	NA	NA	NA
WP_001047630.1\|2779171_2779969_-	antitermination protein	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
WP_023235158.1\|2779958_2780105_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.1e-14	85.4
WP_001096557.1\|2780101_2780713_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	3.6e-91	96.1
WP_001540681.1\|2780921_2781524_-	DUF1367 family protein	S4TTI0	Salmonella_phage	2.6e-110	100.0
WP_001540683.1\|2781558_2781807_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	8.0e-42	98.8
WP_011264355.1\|2781923_2782157_-	DinI family protein	H6WRY5	Salmonella_phage	4.7e-36	98.7
WP_001540684.1\|2782671_2782953_-	hypothetical protein	Q5G8V2	Enterobacteria_phage	1.5e-15	90.9
WP_000224241.1\|2782963_2783221_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
WP_001276150.1\|2783223_2783487_-	hypothetical protein	A0A2H4A316	Salmonella_phage	4.5e-19	85.7
WP_001540687.1\|2783834_2784182_-	DUF977 family protein	H6WRX9	Salmonella_phage	7.2e-57	96.5
WP_001540688.1\|2784192_2784942_-	ATP-binding protein	S4TNF5	Salmonella_phage	6.2e-138	99.6
WP_001540689.1\|2784944_2785928_-	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_001538023.1\|2786012_2786387_-	hypothetical protein	S4TTD7	Salmonella_phage	3.0e-64	100.0
WP_000869364.1\|2786352_2786589_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.8e-38	100.0
WP_001009037.1\|2786718_2787123_+	transcriptional regulator	H6WRX4	Salmonella_phage	1.6e-71	99.3
WP_000917562.1\|2787521_2787680_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_001539619.1\|2787701_2788052_+	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_001540692.1\|2788178_2791106_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	99.2
WP_001539618.1\|2791068_2792226_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|2792268_2792508_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_024131350.1\|2792548_2792833_+	excisionase Xis	H6WRW8	Salmonella_phage	1.6e-41	85.1

DBSCAN-SWA_7

4345930 : 4399576

Burkholderia_phage(40.91%)

plate,holin,tRNA,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001339197.1\|4345930_4347139_+\|transposase	IS4-like element ISVsa5 family transposase	Q9E8P4	Bluetongue_virus	3.0e-235	100.0
WP_000421790.1\|4348687_4349377_-	dipeptidase PepE	NA	NA	NA	NA
WP_001541281.1\|4349448_4349550_+	hypothetical protein	NA	NA	NA	NA
WP_001541282.1\|4349584_4350124_+	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_001541283.1\|4350170_4351040_+	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA
WP_024131392.1\|4351036_4351309_-	DUF3811 domain-containing protein	NA	NA	NA	NA
WP_000881654.1\|4351406_4352348_-	ketopantoate/pantoate/pantothenate transporter PanS	NA	NA	NA	NA
WP_000587743.1\|4352609_4353338_-	hypothetical protein	A0A292GAQ8	Xanthomonas_phage	3.5e-13	28.2
WP_000084338.1\|4354075_4354531_-	hypothetical protein	NA	NA	NA	NA
WP_001151757.1\|4354527_4355142_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368206.1\|4355148_4356807_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.8e-52	40.5
WP_000359503.1\|4356809_4357442_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_000951730.1\|4357434_4358550_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
WP_001093501.1\|4358540_4358900_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_024131394.1\|4359063_4360245_-	hypothetical protein	B9UDL6	Salmonella_phage	2.2e-28	27.9
WP_000703637.1\|4360610_4361540_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	2.0e-149	83.4
WP_000593182.1\|4361536_4361899_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_001541288.1\|4362225_4362948_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000818153.1\|4362957_4364001_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.2e-75	45.1
WP_001269715.1\|4363988_4364198_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	2.6e-17	58.8
WP_001541291.1\|4364197_4365151_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
WP_001185655.1\|4367601_4367730_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003641.1\|4367689_4368007_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907494.1\|4368058_4368583_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729853.1\|4368582_4370010_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
WP_000875314.1\|4369999_4370197_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_001541292.1\|4370193_4370649_-	Gp37 family protein	NA	NA	NA	NA
WP_000777267.1\|4370807_4371122_-	hypothetical protein	Q6QIC4	Burkholderia_phage	8.3e-20	48.2
WP_001541293.1\|4371134_4371740_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	8.4e-61	60.4
WP_001226439.1\|4371742_4372030_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_000615249.1\|4372604_4372952_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.7e-21	51.5
WP_001541295.1\|4373083_4374433_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_001541296.1\|4374777_4376427_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_001541297.1\|4376870_4377113_+	outer membrane protein	NA	NA	NA	NA
WP_001541298.1\|4377146_4377815_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000977962.1\|4377811_4378549_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_001541299.1\|4378548_4380645_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000982749.1\|4380787_4381198_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252085.1\|4381363_4382254_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000382570.1\|4382268_4383813_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_011264450.1\|4383944_4385135_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179176.1\|4385496_4386606_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000973642.1\|4386694_4388053_+	maltoporin	NA	NA	NA	NA
WP_011264451.1\|4388216_4389134_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019230.1\|4389314_4389812_+	chorismate lyase	NA	NA	NA	NA
WP_000455248.1\|4389825_4390698_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017360.1\|4390796_4393217_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002900.1\|4393387_4393756_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646079.1\|4393864_4394473_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_001541301.1\|4394651_4395977_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_010989093.1\|4395973_4396087_+	hypothetical protein	NA	NA	NA	NA
WP_001030592.1\|4396108_4396318_+	CsbD family protein	NA	NA	NA	NA
WP_000416271.1\|4396417_4396933_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001039346.1\|4397179_4398490_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_001182218.1\|4398577_4399576_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_006856

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_006855

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_006905

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection