CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_002127	Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence	0 crisprs	NA	0	0
NC_002128	Escherichia coli O157:H7 str. Sakai plasmid pO157, complete sequence	0 crisprs	RT	0	1
NC_002695	Escherichia coli O157:H7 str. Sakai, complete genome	4 crisprs	DinG,PrimPol,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	5	15

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29207 : 80576

Macacine_betaherpesvirus(17.65%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_052636.1\|29207_30014_+	resolvase	I3WFA4	Macacine_betaherpesvirus	3.7e-56	99.1
NP_052637.1\|30735_31626_-\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_052638.1\|31622_31949_-	hypothetical protein	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_052640.1\|32836_34003_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
NP_052641.1\|34002_34974_+	plasmid-partitioning protein	I3WF22	Macacine_betaherpesvirus	4.8e-175	100.0
NP_052642.1\|36273_37998_+	reverse transcriptase	A0A0U4J920	Pseudomonas_phage	8.3e-170	53.0
NP_052643.1\|38074_38977_+	hypothetical protein	NA	NA	NA	NA
NP_052644.1\|38980_39286_+	hypothetical protein	NA	NA	NA	NA
NP_052645.1\|39362_40046_+	putative methylase	A0A2I7RE86	Vibrio_phage	8.7e-30	37.9
NP_958723.1\|40046_40268_+	hypothetical protein	NA	NA	NA	NA
NP_052646.1\|40161_40716_+	hypothetical protein	NA	NA	NA	NA
NP_052647.1\|40761_41538_+	hypothetical protein	NA	NA	NA	NA
NP_052648.1\|41410_41983_+	hypothetical protein	NA	NA	NA	NA
NP_052649.1\|42078_42381_+	hypothetical protein	NA	NA	NA	NA
NP_052650.1\|42427_42850_+	hypothetical protein	NA	NA	NA	NA
NP_052651.1\|43156_43546_+	hypothetical protein	NA	NA	NA	NA
NP_052652.1\|44033_44264_+	hypothetical protein	NA	NA	NA	NA
NP_052653.1\|44315_45677_+	hypothetical protein	NA	NA	NA	NA
NP_052654.1\|45723_46287_+	hypothetical protein	A8HNV9	Thalassomonas_phage	1.0e-20	36.7
NP_052655.1\|46372_46828_-	hypothetical protein	NA	NA	NA	NA
NP_052656.1\|47129_47582_+	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	4.4e-46	59.3
NP_958724.1\|47638_47872_+	hypothetical protein	NA	NA	NA	NA
NP_052657.1\|47937_49896_+	hypothetical protein	G8DH78	Emiliania_huxleyi_virus	1.8e-19	26.7
NP_052658.1\|49950_50385_+	plasmid SOS inhibition protein B	NA	NA	NA	NA
NP_052659.1\|50381_51143_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
NP_052660.1\|51374_51533_+	small toxic polypeptide	NA	NA	NA	NA
NP_052661.1\|51714_53688_+	NikB	NA	NA	NA	NA
NP_052662.1\|53755_54187_+	hypothetical protein	NA	NA	NA	NA
NP_052663.1\|54760_55120_-\|transposase	transposase Tra5	A0A0P0I4A4	Acinetobacter_phage	1.3e-08	40.5
NP_052664.1\|55301_55712_+\|transposase	transposase	U5N3F9	Enterobacteria_phage	3.3e-40	91.3
NP_052665.1\|55980_65490_+	toxin B	NA	NA	NA	NA
NP_052666.1\|65581_65854_+\|transposase	transposase Tra5	NA	NA	NA	NA
NP_052667.1\|65780_66284_-	hypothetical protein	Q6H9S4	Enterobacteria_phage	8.9e-40	96.4
NP_052669.1\|67748_68495_+	conjugal transfer pilus acetylation protein TraX	A0A077JBM8	Xanthomonas_phage	6.4e-10	30.8
NP_052670.1\|68553_69414_+	hypothetical protein	A2RQC8	Archaeal_BJ1_virus	2.3e-11	23.0
NP_052671.1\|69516_70077_+	conjugal transfer fertility inhibition protein FinO	NA	NA	NA	NA
NP_958725.1\|70209_70422_+	hypothetical protein	NA	NA	NA	NA
NP_052672.1\|70666_71128_+	hypothetical protein	A0A0R6PHV6	Moraxella_phage	5.5e-20	37.1
NP_958726.1\|71173_71383_+	hypothetical protein	NA	NA	NA	NA
NP_052673.1\|71420_71759_+	hypothetical protein	NA	NA	NA	NA
NP_052674.1\|71998_72253_+	replication protein	NA	NA	NA	NA
NP_052675.1\|72555_73413_+	replication protein	NA	NA	NA	NA
NP_052676.1\|74324_74609_+	hypothetical protein	NA	NA	NA	NA
NP_052677.1\|74608_74884_+	hypothetical protein	NA	NA	NA	NA
NP_052678.1\|74978_75185_+	hypothetical protein	NA	NA	NA	NA
NP_052681.1\|76061_76526_-\|transposase	transposase	NA	NA	NA	NA
NP_052684.1\|79688_80576_+\|transposase	transposase	H6WZH1	Escherichia_phage	1.6e-169	99.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_002695

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CRISPR-Cas detection and classification

Crispr_ID: NC_002695_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002695_1

71495-71629

Orphan

Consensus_repeat	Method
TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002695_1

>merge|NC_002695|1|71495-71629|CRISPRCasFinder
TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGCTGAATGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATTGCAGCGTGTAGGCC

>NC_002695|1|1|71495-71629|CRISPRCasFinder
TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	AGATAAGACGCGTCAGCGTCGCATCAGGCGCTGAA
TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATTGCAGCGTGTAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_002695.1\|NP_308094.1\|73193_74894_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NC_002695.1\|NP_308099.1\|79315_80299_-\|thiamine-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NC_002695.1\|NP_308088.1\|63448_64201_+\|hypothetical-protein	unknown	unknown	unknown
NC_002695.1\|NP_308084.1\|57401_58391_-\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234696
NC_002695.1\|NP_308095.1\|75232_76111_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236717
NC_002695.1\|NP_308086.1\|59729_62084_-\|organic-solvent-tolerance-protein	unknown	unknown	gnl\|CDD\|235158
NC_002695.1\|NP_308091.1\|68359_70711_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NC_002695.1\|NP_308102.1\|83454_84060_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NC_002695.1\|NP_308092.1\|70785_71481_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NC_002695.1\|NP_308090.1\|65289_68196_-\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|235319
NC_002695.1\|NP_308085.1\|58390_59677_-\|peptidyl-prolyl-cis-trans-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NC_002695.1\|NP_308098.1\|77729_79340_-\|thiamine-transporter-membrane-protein	unknown	unknown	gnl\|CDD\|181853
NC_002695.1\|NP_308097.1\|77047_77746_-\|thiamine-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182716
NC_002695.1\|NP_308089.1\|64618_65278_-\|23S-rRNA/tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
NC_002695.1\|NP_308100.1\|80670_81240_+\|hypothetical-protein	unknown	unknown	unknown
NC_002695.1\|NP_308083.1\|56583_57405_-\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
NC_002695.1\|NP_308087.1\|62338_63154_+\|Dna-J-like-membrane-chaperone-protein	unknown	unknown	gnl\|CDD\|236512
NC_002695.1\|NP_308093.1\|71680_73183_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NC_002695.1\|NP_308101.1\|81468_83127_-\|transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NC_002695.1\|NP_308096.1\|76196_76961_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659

Protein	Function_ID	Function_description	E-value
NC_002695.1\|NP_308094.1\|73193_74894_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NC_002695.1\|NP_308099.1\|79315_80299_-\|thiamine-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NC_002695.1\|NP_308090.1\|65289_68196_-\|ATP-dependent-helicase-HepA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NC_002695.1\|NP_308084.1\|57401_58391_-\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NC_002695.1\|NP_308095.1\|75232_76111_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NC_002695.1\|NP_308086.1\|59729_62084_-\|organic-solvent-tolerance-protein	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NC_002695.1\|NP_308091.1\|68359_70711_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NC_002695.1\|NP_308102.1\|83454_84060_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	7.66288e-142
NC_002695.1\|NP_308092.1\|70785_71481_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	3.528e-179
NC_002695.1\|NP_308085.1\|58390_59677_-\|peptidyl-prolyl-cis-trans-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NC_002695.1\|NP_308098.1\|77729_79340_-\|thiamine-transporter-membrane-protein	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NC_002695.1\|NP_308097.1\|77047_77746_-\|thiamine-transporter-ATP-binding-protein	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	5.93317e-163
NC_002695.1\|NP_308089.1\|64618_65278_-\|23S-rRNA/tRNA-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	5.25024e-158
NC_002695.1\|NP_308083.1\|56583_57405_-\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.27697e-148
NC_002695.1\|NP_308093.1\|71680_73183_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NC_002695.1\|NP_308087.1\|62338_63154_+\|Dna-J-like-membrane-chaperone-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NC_002695.1\|NP_308101.1\|81468_83127_-\|transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NC_002695.1\|NP_308096.1\|76196_76961_+\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.79494e-49

>NC_002695.1|NP_308092.1|70785_71481_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NC_002695.1|NP_308091.1|68359_70711_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILRGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLVSSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEATKIGRALVQHVNVWWAETLQKQQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYFRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NC_002695.1|NP_308090.1|65289_68196_-|ATP-dependent-helicase-HepA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NC_002695.1|NP_308089.1|64618_65278_-|23S-rRNA/tRNA-pseudouridine-synthase-A
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NC_002695.1|NP_308088.1|63448_64201_+|hypothetical-protein
MKVSVPGMPATLLNMSNNDIYKMVSGDKMDMKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNKKAGNINASKYFTGAVNENEKEKFIHSLELFNELKTCAKNPDEMVAKGNMSWVAQTFGDIELSVTFFIENKEICTQTLQLHKGPGNLGVDLREAYLPGVDMRDCYLGLKTMKGHNKVLYLEPGWNANLDGATLDGATLDGATVDGATHLYDEVIIINKITPKKIDTEEVATKQSTAEQITDNAIIE
>NC_002695.1|NP_308087.1|62338_63154_+|Dna-J-like-membrane-chaperone-protein
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NC_002695.1|NP_308086.1|59729_62084_-|organic-solvent-tolerance-protein
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINANHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVSIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NC_002695.1|NP_308085.1|58390_59677_-|peptidyl-prolyl-cis-trans-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NC_002695.1|NP_308084.1|57401_58391_-|4-hydroxythreonine-4-phosphate-dehydrogenase
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NC_002695.1|NP_308083.1|56583_57405_-|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPFQES
>NC_002695.1|NP_308093.1|71680_73183_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVKALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NC_002695.1|NP_308094.1|73193_74894_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCTTGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKEQIDASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NC_002695.1|NP_308095.1|75232_76111_+|AraC-family-transcriptional-regulator
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NC_002695.1|NP_308096.1|76196_76961_+|hypothetical-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLVRHPLMPVYIDILRKVVGV
>NC_002695.1|NP_308097.1|77047_77746_-|thiamine-transporter-ATP-binding-protein
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNELLSGKASASALLGITG
>NC_002695.1|NP_308098.1|77729_79340_-|thiamine-transporter-membrane-protein
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGDWSAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTMLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFSVIEKIPGRNVKTD
>NC_002695.1|NP_308099.1|79315_80299_-|thiamine-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDIFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NC_002695.1|NP_308100.1|80670_81240_+|hypothetical-protein
MKVRNPEQISIPASNTTKDPGLTNSQIIRMANLVKKTENMNIFEELWETLRNLFQSDKHSQTAARQILKDAFYFQNSDDYSKYFTGAVDGKARDKLTHWLIKFNELKEYAKDPENMAAKASLSPEGTLCVSFFIGDEAIFTLELQLKKSTRTGGIDLSNAYFNGVVICGIDCLEVDLSNAETNNSRWYD
>NC_002695.1|NP_308101.1|81468_83127_-|transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTITSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQVDAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDPE
>NC_002695.1|NP_308102.1|83454_84060_-|3-isopropylmalate-dehydratase-small-subunit
MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPDFVLNFSQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMR

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Crispr_ID: NC_002695_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002695_2

3598223-3598435

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACACA	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACA	PILER-CR

3 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_002695_2

>merge|NC_002695|2|3598223-3598435|CRISPRCasFinder,CRT,PILER-CR
CGGTTTATCCCCGCTGATGCGGGGAACACAGCGGCACGCTGGATTGAACAAATCCCTGGGCCGGTTTATCCCCGCTGGCGCGGGGAACACAAACCGAAACACACGATCAATCCGAATATGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTGGTGACAGTTTTTGTCACTGTTTTGGTGACGGTTTATCCCCGCTGGCGCGGGGAACACA

>NC_002695|2|2|3598223-3598434|CRISPRCasFinder
CGGTTTATCCCCGCTGATGCGGGGAACAC	AGCGGCACGCTGGATTGAACAAATCCCTGGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAACCGAAACACACGATCAATCCGAATATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGGTGACAGTTTTTGTCACTGTTTTGGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_002695|2|1|3598223-3598435|CRT
CGGTTTATCCCCGCTGATGCGGGGAACACA	GCGGCACGCTGGATTGAACAAATCCCTGGGC
CGGTTTATCCCCGCTGGCGCGGGGAACACA	AACCGAAACACACGATCAATCCGAATATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACACT	TTGGTGACAGTTTTTGTCACTGTTTTGGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACACA

>NC_002695|2|1|3598284-3598435|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACACA	AACCGAAACACACGATCAATCCGAATATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACACT	TTGGTGACAGTTTTTGTCACTGTTTTGGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_002695.1\|NP_311629.1\|3593031_3593343_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_002695.1\|NP_311643.1\|3607280_3607433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366840
NC_002695.1\|NP_311628.1\|3592302_3593013_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_002695.1\|NP_311625.1\|3590035_3590797_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_002695.1\|NP_311630.1\|3593536_3593860_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
NC_002695.1\|NP_311634.1\|3597103_3598141_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|182299
NC_002695.1\|NP_311632.1\|3594514_3595942_-\|sulfate-adenylyltransferase-subunit-1	unknown	unknown	gnl\|CDD\|235349
NC_002695.1\|NP_311633.1\|3595943_3596852_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
NC_002695.1\|NP_311637.2\|3599740_3600529_-\|hypothetical-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_002695.1\|NP_311631.1\|3593909_3594515_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_002695.1\|NP_311626.1\|3590777_3591827_-\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
NC_002695.1\|NP_311639.1\|3601129_3602185_-\|hypothetical-protein	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NC_002695.1\|NP_311627.1\|3591823_3592303_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_002695.1\|NP_311636.1\|3598820_3599744_-\|hypothetical-protein	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_002695.1\|NP_311642.2\|3604389_3607089_-\|hypothetical-protein	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_002695.1\|NP_311640.1\|3602196_3602733_-\|hypothetical-protein	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_002695.1\|NP_311641.1\|3602729_3604292_-\|hypothetical-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_002695.1\|NP_311638.1\|3600372_3601119_-\|hypothetical-protein	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_002695.1\|NP_311644.1\|3607696_3608431_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_002695.1\|NP_311635.1\|3598530_3598824_-\|hypothetical-protein	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
NC_002695.1\|NP_311629.1\|3593031_3593343_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NC_002695.1\|NP_311643.1\|3607280_3607433_-\|hypothetical-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NC_002695.1\|NP_311628.1\|3592302_3593013_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	6.38982e-120
NC_002695.1\|NP_311625.1\|3590035_3590797_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NC_002695.1\|NP_311630.1\|3593536_3593860_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.44794e-52
NC_002695.1\|NP_311634.1\|3597103_3598141_+\|alkaline-phosphatase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_002695.1\|NP_311632.1\|3594514_3595942_-\|sulfate-adenylyltransferase-subunit-1	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_002695.1\|NP_311633.1\|3595943_3596852_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_002695.1\|NP_311637.2\|3599740_3600529_-\|hypothetical-protein	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.62085e-93
NC_002695.1\|NP_311631.1\|3593909_3594515_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NC_002695.1\|NP_311626.1\|3590777_3591827_-\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_002695.1\|NP_311639.1\|3601129_3602185_-\|hypothetical-protein	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.45802e-155
NC_002695.1\|NP_311627.1\|3591823_3592303_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NC_002695.1\|NP_311636.1\|3598820_3599744_-\|hypothetical-protein	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.06391e-157
NC_002695.1\|NP_311642.2\|3604389_3607089_-\|hypothetical-protein	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NC_002695.1\|NP_311640.1\|3602196_3602733_-\|hypothetical-protein	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	3.2742e-30
NC_002695.1\|NP_311641.1\|3602729_3604292_-\|hypothetical-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_002695.1\|NP_311638.1\|3600372_3601119_-\|hypothetical-protein	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
NC_002695.1\|NP_311644.1\|3607696_3608431_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.85899e-137
NC_002695.1\|NP_311635.1\|3598530_3598824_-\|hypothetical-protein	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65

>NC_002695.1|NP_311634.1|3597103_3598141_+|alkaline-phosphatase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPQSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NC_002695.1|NP_311633.1|3595943_3596852_-|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHQNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NC_002695.1|NP_311632.1|3594514_3595942_-|sulfate-adenylyltransferase-subunit-1
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRSRVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGEK
>NC_002695.1|NP_311631.1|3593909_3594515_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NC_002695.1|NP_311630.1|3593536_3593860_-|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLMTVGIMFGALFMWLLG
>NC_002695.1|NP_311629.1|3593031_3593343_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NC_002695.1|NP_311628.1|3592302_3593013_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVYALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGAAITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NC_002695.1|NP_311627.1|3591823_3592303_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NC_002695.1|NP_311626.1|3590777_3591827_-|tRNA-pseudouridine-synthase-D
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NC_002695.1|NP_311625.1|3590035_3590797_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NC_002695.1|NP_311635.1|3598530_3598824_-|hypothetical-protein
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NC_002695.1|NP_311636.1|3598820_3599744_-|hypothetical-protein
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEKVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NC_002695.1|NP_311637.2|3599740_3600529_-|hypothetical-protein
MLVGRGTRRPGREQNITSPGCSFKSSAVAVWGTHHQSGAVAQQGGTMYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFVPELRTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEV
>NC_002695.1|NP_311638.1|3600372_3601119_-|hypothetical-protein
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NC_002695.1|NP_311639.1|3601129_3602185_-|hypothetical-protein
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NC_002695.1|NP_311640.1|3602196_3602733_-|hypothetical-protein
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAALSANVKAIDERLPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRVVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRHQRPTEFIRIRWALEYYQAGDVDNEQNQ
>NC_002695.1|NP_311641.1|3602729_3604292_-|hypothetical-protein
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHPFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLERVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NC_002695.1|NP_311642.2|3604389_3607089_-|hypothetical-protein
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKEGGDGYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLAPELKIPEGSRKNYEKISHSTLGYWLWNYYLSECEELLPSSSLSSRKLTRVIEMWMSITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKALFPLIEIPTFWDDDEGVELLKQLSWYISATVVLADWTGSSTRFFPRVAHPMDIKDYWQKTLVQAQNALTVFPPKAETAPFTGINTLFPFIEHPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAARKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFANSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIEMETLARFGKEDGSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIAGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDDESCGYSAREGLIGKVD
>NC_002695.1|NP_311643.1|3607280_3607433_-|hypothetical-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NC_002695.1|NP_311644.1|3607696_3608431_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKNGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NC_002695_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002695_3

3624127-3624215

Unclear

I-E

Consensus_repeat	Method
GGTTTATCCCCACTGGCGCGGGGAACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002695_3

>merge|NC_002695|3|3624127-3624215|CRISPRCasFinder
GGTTTATCCCCACTGGCGCGGGGAACTCCTCGACTTTAATTTTTTCGCTGCCCGCTTTTGCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NC_002695|3|3|3624127-3624215|CRISPRCasFinder
GGTTTATCCCCACTGGCGCGGGGAACTC	CTCGACTTTAATTTTTTCGCTGCCCGCTTTTGC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_002695.1\|NP_311661.1\|3625605_3626001_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224618
NC_002695.1\|NP_311657.2\|3619604_3620390_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NC_002695.1\|NP_311666.1\|3629041_3630340_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_002695.1\|NP_311656.1\|3618080_3619535_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223354
NC_002695.1\|NP_311647.1\|3612331_3612697_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_002695.1\|NP_311662.1\|3626014_3626689_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
NC_002695.1\|NP_311665.2\|3628076_3628982_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
NC_002695.1\|NP_311664.1\|3626922_3628071_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
NC_002695.1\|NP_311668.1\|3632292_3633084_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_002695.1\|NP_311650.1\|3614313_3614889_+\|anti-terminator-regulatory-protein	unknown	unknown	gnl\|CDD\|224865
NC_002695.1\|NP_311653.2\|3615893_3616673_-\|transporter	unknown	unknown	gnl\|CDD\|224997
NC_002695.1\|NP_311649.2\|3614036_3614297_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225289
NC_002695.1\|NP_311670.1\|3633489_3633738_-\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NC_002695.1\|NP_311648.2\|3612774_3614046_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182194
NC_002695.1\|NP_311669.1\|3633154_3633490_-\|toxin-ChpA	unknown	unknown	gnl\|CDD\|182138
NC_002695.1\|NP_311659.1\|3622012_3623491_+\|kinase	unknown	unknown	gnl\|CDD\|212662
NC_002695.1\|NP_311646.1\|3610216_3612016_-\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
NC_002695.1\|NP_311658.1\|3620708_3621986_+\|transporter	unknown	unknown	gnl\|CDD\|349949
NC_002695.1\|NP_311660.1\|3624554_3625226_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_002695.1\|NP_311667.1\|3630427_3632065_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NC_002695.1\|NP_311661.1\|3625605_3626001_+\|hypothetical-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.08687e-41
NC_002695.1\|NP_311657.2\|3619604_3620390_-\|oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.24046e-138
NC_002695.1\|NP_311666.1\|3629041_3630340_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_002695.1\|NP_311656.1\|3618080_3619535_-\|hypothetical-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.96301e-83
NC_002695.1\|NP_311647.1\|3612331_3612697_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NC_002695.1\|NP_311662.1\|3626014_3626689_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.44494e-83
NC_002695.1\|NP_311665.2\|3628076_3628982_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.2458e-104
NC_002695.1\|NP_311664.1\|3626922_3628071_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.38776e-66
NC_002695.1\|NP_311668.1\|3632292_3633084_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NC_002695.1\|NP_311650.1\|3614313_3614889_+\|anti-terminator-regulatory-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
NC_002695.1\|NP_311653.2\|3615893_3616673_-\|transporter	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.2806e-65
NC_002695.1\|NP_311649.2\|3614036_3614297_+\|hypothetical-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.18571e-41
NC_002695.1\|NP_311670.1\|3633489_3633738_-\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NC_002695.1\|NP_311648.2\|3612774_3614046_+\|hypothetical-protein	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	4.44674e-126
NC_002695.1\|NP_311669.1\|3633154_3633490_-\|toxin-ChpA	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NC_002695.1\|NP_311659.1\|3622012_3623491_+\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.7676e-107
NC_002695.1\|NP_311646.1\|3610216_3612016_-\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_002695.1\|NP_311658.1\|3620708_3621986_+\|transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.69151e-30
NC_002695.1\|NP_311660.1\|3624554_3625226_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NC_002695.1\|NP_311667.1\|3630427_3632065_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>NC_002695.1|NP_311659.1|3622012_3623491_+|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGQITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLSTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKALTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NC_002695.1|NP_311658.1|3620708_3621986_+|transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTQPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NC_002695.1|NP_311657.2|3619604_3620390_-|oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIENQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NC_002695.1|NP_311656.1|3618080_3619535_-|hypothetical-protein
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVNCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NC_002695.1|NP_311653.2|3615893_3616673_-|transporter
MNILLAFKAEPDAGMLAEKEWQAAAHGNSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRIRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NC_002695.1|NP_311650.1|3614313_3614889_+|anti-terminator-regulatory-protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NC_002695.1|NP_311649.2|3614036_3614297_+|hypothetical-protein
MSVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NC_002695.1|NP_311648.2|3612774_3614046_+|hypothetical-protein
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDCATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDTALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPVLLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLLWRHLRRHGLWNLAGDVIRSVRCL
>NC_002695.1|NP_311647.1|3612331_3612697_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NC_002695.1|NP_311646.1|3610216_3612016_-|sulfite-reductase-subunit-alpha
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGVVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQEEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NC_002695.1|NP_311660.1|3624554_3625226_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_002695.1|NP_311661.1|3625605_3626001_+|hypothetical-protein
MARSQANRASSDLQQTPGDEQKLQAWQQAQAQVTRTLGQLTIISERYPELKSQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNANAH
>NC_002695.1|NP_311662.1|3626014_3626689_+|hypothetical-protein
MRNFIFLMAFFCSSVFATQIPVPESPKYVNDLTGTLTNSEVNTLTNQIKALTQKNYAQLVVLVVETTGDETIEQYATRVFDSWKPGDKDRDDGVLLLVAWQDHTVRIEIGYGLEGIITDAQSGKIIRNSIIPAFKKGDLAGGLQKGISDIESRLTGNNLATITPTDHPLPFSGWWALLVWAIVLTFISARGYIKTLGVICFAAIVLAFVLPIAGFSGSWGVLAT
>NC_002695.1|NP_311664.1|3626922_3628071_+|hypothetical-protein
MRIFLLLLMLCGFQVFAERLPSVTDLTGTLTTEEQTALTQQLQTLEQQNHFQVAVLVTPTTGGKNIKLAASQRYGVYHWKPVGEKRYGEGILILVVWPEGLASMKIGHGLEEMLPPEQAAQIVRYHMQPEFEKNNLFAGLTGGIESIAQFTHIKANLSPLDALANHLFANPQRSLPCLAWTLLMIVAIVVLWLFASRPRRGIWMISMITPMVWFFSFQDDVIIRRVSVVCFSLLLATTCKQRLAVVFNMCRVFPMMLTPKNKNAKVKKQKKTPQVRESGRNSLFVVMLIIIVGWCLVFASNKDIAFISTIIGLIDHFIGPITIAGIVLLIIVAKFTGNLKLGSGEKSNRKTGNRNAHSRSSSRNSFRGGGGSSGGGGSSVRW
>NC_002695.1|NP_311665.2|3628076_3628982_+|hypothetical-protein
MRLIFILFTLWCLPGLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITHKTRAQVAVLVVPSTGDDSIEQYATRVFDSWKLGDKQRNDGILLLVAWEDHAVRIEVGYGLEGVVTDLQAAKIIRDILIPAFKSDDLMGGLTLASENIGALLLNGELPEDRGDYYSINPPIPLSLAVIILLAVLSYFIVFTDPSNLPWITLTGAIYGMVFLYVAEPGPWTNLIVACGMLTPFAIVPLVIFWLIVNKKLRAKYKKLSKDRASRKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGASGRW
>NC_002695.1|NP_311666.1|3629041_3630340_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_002695.1|NP_311667.1|3630427_3632065_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NC_002695.1|NP_311668.1|3632292_3633084_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NC_002695.1|NP_311669.1|3633154_3633490_-|toxin-ChpA
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NC_002695.1|NP_311670.1|3633489_3633738_-|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW

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Crispr_ID: NC_002695_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_002695_4

5339845-5339994

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_002695_4

>merge|NC_002695|4|5339845-5339994|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NC_002695|4|4|5339845-5339994|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTG
CGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_002695.1\|NP_313261.1\|5335127_5336324_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226719
NC_002695.1\|NP_313272.1\|5350718_5351003_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379344
NC_002695.1\|NP_313264.1\|5340030_5341542_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_002695.1\|NP_313260.2\|5334431_5334935_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366181
NC_002695.1\|NP_313266.2\|5342908_5343991_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237900
NC_002695.1\|NP_313268.2\|5345783_5346803_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|176186
NC_002695.1\|NP_313267.1\|5344151_5345654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283518
NC_002695.1\|NP_313269.1\|5347173_5349123_+\|integrase	unknown	unknown	gnl\|CDD\|271184
NC_002695.1\|NP_313271.1\|5349645_5350536_+\|transposase	unknown	unknown	gnl\|CDD\|222853
NC_002695.1\|NP_313258.1\|5332803_5333808_-\|ornithine-carbamoyltransferase-subunit-I	unknown	unknown	gnl\|CDD\|179587
NC_002695.1\|NP_313256.2\|5330399_5330852_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225345
NC_002695.1\|NP_313257.1\|5330974_5332747_+\|hypothetical-protein	unknown	unknown	unknown
NC_002695.1\|NP_313273.1\|5351217_5351550_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|311781
NC_002695.1\|NP_313263.1\|5339233_5339677_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NC_002695.1\|NP_313259.1\|5333969_5334386_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236876
NC_002695.1\|NP_313262.1\|5336378_5339234_-\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235582
NC_002695.1\|NP_313265.1\|5341808_5342909_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185075
NC_002695.1\|NP_313255.2\|5329661_5330255_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366102
NC_002695.1\|NP_313270.1\|5349322_5349649_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_002695.1\|NP_313253.1\|5328877_5329591_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|183714

Protein	Function_ID	Function_description	E-value
NC_002695.1\|NP_313272.1\|5350718_5351003_-\|hypothetical-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	1.08728e-08
NC_002695.1\|NP_313264.1\|5340030_5341542_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_002695.1\|NP_313260.2\|5334431_5334935_-\|hypothetical-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.52162e-19
NC_002695.1\|NP_313266.2\|5342908_5343991_+\|hypothetical-protein	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NC_002695.1\|NP_313268.2\|5345783_5346803_-\|oxidoreductase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.44918e-169
NC_002695.1\|NP_313267.1\|5344151_5345654_-\|hypothetical-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NC_002695.1\|NP_313269.1\|5347173_5349123_+\|integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	3.00603e-64
NC_002695.1\|NP_313271.1\|5349645_5350536_+\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.4254e-160
NC_002695.1\|NP_313258.1\|5332803_5333808_-\|ornithine-carbamoyltransferase-subunit-I	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NC_002695.1\|NP_313262.1\|5336378_5339234_-\|valyl-tRNA-synthetase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_002695.1\|NP_313261.1\|5335127_5336324_+\|hypothetical-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	5.35185e-152
NC_002695.1\|NP_313273.1\|5351217_5351550_-\|hypothetical-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	3.32232e-05
NC_002695.1\|NP_313263.1\|5339233_5339677_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NC_002695.1\|NP_313259.1\|5333969_5334386_+\|hypothetical-protein	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NC_002695.1\|NP_313256.2\|5330399_5330852_+\|hypothetical-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.50239e-70
NC_002695.1\|NP_313265.1\|5341808_5342909_+\|hypothetical-protein	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NC_002695.1\|NP_313255.2\|5329661_5330255_+\|hypothetical-protein	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.63528e-10
NC_002695.1\|NP_313270.1\|5349322_5349649_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	4.46762e-09
NC_002695.1\|NP_313253.1\|5328877_5329591_-\|oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.19644e-150

>NC_002695.1|NP_313263.1|5339233_5339677_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NC_002695.1|NP_313262.1|5336378_5339234_-|valyl-tRNA-synthetase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NC_002695.1|NP_313261.1|5335127_5336324_+|hypothetical-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLIGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGVWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIVSVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>NC_002695.1|NP_313260.2|5334431_5334935_-|hypothetical-protein
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALKAMEEAREMGFKRCYLETTAFLKEAIGLYEHLGFQHIDYALGCTGHVDCEVRMLREL
>NC_002695.1|NP_313259.1|5333969_5334386_+|hypothetical-protein
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NC_002695.1|NP_313258.1|5332803_5333808_-|ornithine-carbamoyltransferase-subunit-I
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKPFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NC_002695.1|NP_313257.1|5330974_5332747_+|hypothetical-protein
MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAGGQDNTRNILNPKTFLEFLVKIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADSPKVIIEISLSTITTMGTRQGHTAIIFPQPDGSTNRYERKSFERKDESSLHLITNKVLACYQREANKEIARLLNNHQKLNNLQKLNNLQKLNNLQKLNNIQKLNNIQELNNSQELNNSQELNNSQELNNSQDLKNSQVSCKGSVDFTITDLLEKSLNNALLAIRNEHLLLMPHVCSESISYLLGENGILEEIDKLYELNDHGIDNDKEGNNEINDIMINLSHILIESLDDAKVNLTPVIHSMLMTFLELPYNNDVKILEWCFNKSMQYFDDSAKIEHACSVINHINFRRDQSKVAETLFFNLDKEPYKNSPELQELIWKKLVVYVNDFNLSNREKTYLIQRIFNNVESLFNKVPVSILVNDIFMNDFFMKNTEMINWYFPRLLKSYEDEKIYFDKLGYNFNNKESNEEIMKNQPKDVIEEKLNNELKLRFRMMQTILKSEVNVSPFIDQQRLNTLNPPENLRIAIEKFGWKKKTITA
>NC_002695.1|NP_313256.2|5330399_5330852_+|hypothetical-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NC_002695.1|NP_313255.2|5329661_5330255_+|hypothetical-protein
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLVDILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFMSTVMSGLSAKAREGHSLEQLCATAALAGEAIKTILKE
>NC_002695.1|NP_313253.1|5328877_5329591_-|oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NC_002695.1|NP_313264.1|5340030_5341542_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NC_002695.1|NP_313265.1|5341808_5342909_+|hypothetical-protein
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NC_002695.1|NP_313266.2|5342908_5343991_+|hypothetical-protein
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NC_002695.1|NP_313267.1|5344151_5345654_-|hypothetical-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIDVNDWQPHANPVVVWDIFGEKGHSVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NC_002695.1|NP_313268.2|5345783_5346803_-|oxidoreductase
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVVLKADF
>NC_002695.1|NP_313269.1|5347173_5349123_+|integrase
MSQRYKLYRRTSGIYVVRISVPQRFRRYAGQCEIHTSTGTHDLHEAKQKSALLLAVWYQTLQEYEQLDYRTLSDCAPLLAGEGMISLSNFAQSIELPISQLIREVVNRNLPVFWLATGQFGFYVDEFNAVEREPGAKREKQSDDEKDQPKEVIILNSAFELGIESFANGYLRPFNPRHTLDCLLSAGVSEGEAAFRTSGDNQSGGWFFDLPGVDITADSLLISKVHAEGLRLTWLVKTTPPAVSIHPAVPLVAPVIANEYVHRKHYNENLSWLREEYLKHRRKGKVSEAALRDIRYYFDLMIEVMGDIQLEDFDRDFLRAYESKLRTIPANRNLMKGKHGVKTLDELIAKAAECGDKLMTEESVKKYINGLYGAMEWAVDDGKFLKSPCDNFFPPDDKGEREQDHTDIFEPHEIKAIFSQPWFVAGTVERNAQGRFHQYCPFHYWAPLLGLMTGARVNEIAQLMLDDVLADDGVYYLNLESDSENGKKLKNANSRRKIPVHSTLIELGFIEYVDALKAAGYDRLFPELKPHKTKGYGRPVSAWFNESLLAGRLKLERDRSKSFHSFRHSVSTLLKEKGVSSELRGQLLGHVRGKTETEVRYSKDLKPVHMVEVVEKIDFSLPEIARFNIPDGLDAVRDALRRKRGKQTG
>NC_002695.1|NP_313270.1|5349322_5349649_+|transposase
MTKNTRFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTSAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
>NC_002695.1|NP_313271.1|5349645_5350536_+|transposase
MMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA
>NC_002695.1|NP_313272.1|5350718_5351003_-|hypothetical-protein
MEILLVKRQNMKIKIYQEKGHQLPHIHIDYGKQAHAASYAIQSGDRIEGDLPKKYDSDVSSWLGRNRDKILEIWNALQAGAPYEPLIAELTGGV
>NC_002695.1|NP_313273.1|5351217_5351550_-|hypothetical-protein
MRTVEILQYTLRKGSGAAFHAIMQEISVPLHQSHGIDVVSFGNSLDDLDCYYLIRAFDSAKSMTAVLDAFYASADWRSGPREDIIGSIENCIKTVISLPSESVKGLRMQS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_002695_2	2.3\|3598374\|32\|NC_002695\|CRISPRCasFinder	3598374-3598405	32	MK047640	Phage NV18, complete genome	15645-15676	1	0.969
NC_002695_2	2.6\|3598375\|31\|NC_002695\|CRT,PILER-CR	3598375-3598405	31	MK047640	Phage NV18, complete genome	15646-15676	1	0.968
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101196-101230	2	0.943
NC_002695_2	2.3\|3598374\|32\|NC_002695\|CRISPRCasFinder	3598374-3598405	32	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	2718-2749	2	0.938
NC_002695_2	2.6\|3598375\|31\|NC_002695\|CRT,PILER-CR	3598375-3598405	31	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	2718-2748	2	0.935
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165464-165498	3	0.914
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14239-14273	5	0.857
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56080-56114	5	0.857
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	6804-6838	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208981-209015	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219475-219509	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210309-210343	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191264-191298	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30177-30211	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	170-204	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	88-122	6	0.829
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87137-87171	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	138033-138067	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	43-77	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3372-3406	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208887-208921	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	42-76	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3371-3405	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219381-219415	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	42-76	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3371-3405	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210215-210249	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	42-76	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3371-3405	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191170-191204	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27246-27280	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18350-18384	7	0.8
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15018-15052	7	0.8
NC_002695_2	2.4\|3598253\|31\|NC_002695\|CRT	3598253-3598283	31	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	90200-90230	7	0.774
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	61916-61950	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4114-4148	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229148-229182	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229249-229283	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229350-229384	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229451-229485	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	203852-203886	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204038-204072	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204131-204165	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4113-4147	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239642-239676	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239743-239777	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239844-239878	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239945-239979	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214346-214380	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214532-214566	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214625-214659	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4113-4147	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230554-230588	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230655-230689	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230756-230790	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230857-230891	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205180-205214	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205366-205400	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205459-205493	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4113-4147	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211524-211558	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211625-211659	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211726-211760	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211827-211861	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186135-186169	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186321-186355	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186414-186448	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	14272-14306	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	6744-6778	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7392-7426	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	83590-83624	8	0.771
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84216-84250	8	0.771
NC_002695_2	2.1\|3598252\|32\|NC_002695\|CRISPRCasFinder	3598252-3598283	32	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	90200-90231	8	0.75
NC_002695_2	2.6\|3598375\|31\|NC_002695\|CRT,PILER-CR	3598375-3598405	31	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	102901-102931	8	0.742
NC_002695_2	2.6\|3598375\|31\|NC_002695\|CRT,PILER-CR	3598375-3598405	31	NZ_CP032697	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence	313484-313514	8	0.742
NC_002695_2	2.6\|3598375\|31\|NC_002695\|CRT,PILER-CR	3598375-3598405	31	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	984473-984503	8	0.742
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386558-386592	9	0.743
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4013-4047	9	0.743
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4012-4046	9	0.743
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4012-4046	9	0.743
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4012-4046	9	0.743
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	13988-14022	9	0.743
NC_002695_1	1.1\|71545\|35\|NC_002695\|CRISPRCasFinder	71545-71579	35	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41415-41449	9	0.743
NC_002695_2	2.3\|3598374\|32\|NC_002695\|CRISPRCasFinder	3598374-3598405	32	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	102900-102931	9	0.719
NC_002695_2	2.3\|3598374\|32\|NC_002695\|CRISPRCasFinder	3598374-3598405	32	NZ_CP032697	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence	313483-313514	9	0.719
NC_002695_2	2.3\|3598374\|32\|NC_002695\|CRISPRCasFinder	3598374-3598405	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	984472-984503	9	0.719

1. spacer 2.3|3598374|32|NC_002695|CRISPRCasFinder matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 1, identity: 0.969

tttggtgacagtttttgtcactgttttggtga	CRISPR spacer
tttggtgacactttttgtcactgttttggtga	Protospacer
********** *********************

2. spacer 2.6|3598375|31|NC_002695|CRT,PILER-CR matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 1, identity: 0.968

ttggtgacagtttttgtcactgttttggtga	CRISPR spacer
ttggtgacactttttgtcactgttttggtga	Protospacer
********* *********************

3. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.943

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcgctgaa	Protospacer
 ***********.**********************

4. spacer 2.3|3598374|32|NC_002695|CRISPRCasFinder matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 2, identity: 0.938

tttggtgacagtttttgtcactgttttggtga	CRISPR spacer
tttggtgacactttttgtcactgatttggtga	Protospacer
********** ************ ********

5. spacer 2.6|3598375|31|NC_002695|CRT,PILER-CR matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 2, identity: 0.935

ttggtgacagtttttgtcactgttttggtga	CRISPR spacer
ttggtgacactttttgtcactgatttggtga	Protospacer
********* ************ ********

6. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.914

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
agataagacgcgtcagcgtcgcatcaggcgttaca	Protospacer
******************************.*. *

7. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 5, identity: 0.857

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgacagcggcgcatcaggcgctggt	Protospacer
 *********** ***** **************.

8. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 5, identity: 0.857

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
cgctaagacgcgccagcgtcgcatcaggcgttgag	Protospacer
 * *********.*****************.***.

9. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
agataagacgcgtcagcgtcgcatctggcataaac	Protospacer
************************* ***.. .*

10. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 ****************************... .*

11. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 ****************************... .*

12. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 ****************************... .*

13. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 ****************************... .*

14. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatcaga	Protospacer
 ****************************.....*

15. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcttcaat	Protospacer
 **************************** ...*

16. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 6, identity: 0.829

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatcggc	Protospacer
 ****************************...*.

17. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcggcagcgtcgcatcaggcatcgtg	Protospacer
 *********** ****************...* .

18. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcattagcgtcgcatcaggcagcgca	Protospacer
 **********.*.***************. .* *

19. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
 ****************************.....

20. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
 ***********.****************.*. .

21. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataaaacgcgtcagcgtcgcatcaggcatcggc	Protospacer
 *****.**********************...*.

22. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
 ****************************.....

23. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
 ***********.****************.*. .

24. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataaaacgcgtcagcgtcgcatcaggcatcggc	Protospacer
 *****.**********************...*.

25. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
 ****************************.....

26. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
 ***********.****************.*. .

27. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataaaacgcgtcagcgtcgcatcaggcatcggc	Protospacer
 *****.**********************...*.

28. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
 ****************************.....

29. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
 ***********.****************.*. .

30. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataaaacgcgtcagcgtcgcatcaggcatcggc	Protospacer
 *****.**********************...*.

31. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtctgcgtcgcatctggcaccggt	Protospacer
 ************* ********** ***.*.*.

32. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
 ****************************.....

33. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcacctgg	Protospacer
 ***********.****************.*. ..

34. spacer 2.4|3598253|31|NC_002695|CRT matches to NC_015512 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence) position: , mismatch: 7, identity: 0.774

gcggcacgctggattgaacaaat---ccctgggc	CRISPR spacer
gcggcacgatgggttgaacaaatggactttg---	Protospacer
******** ***.**********   *..**

35. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
agataagacgcgccagcgtcgcatctggcatctgc	Protospacer
************.************ ***... .

36. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***********.****************... .

37. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

38. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

39. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

40. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

41. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcgacgcatcaggcatcggc	Protospacer
 ****** ********** **********...*.

42. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

43. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

44. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***********.****************... .

45. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

46. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

47. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

48. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

49. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcgacgcatcaggcatcggc	Protospacer
 ****** ********** **********...*.

50. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

51. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

52. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***********.****************... .

53. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

54. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

55. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

56. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

57. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcgacgcatcaggcatcggc	Protospacer
 ****** ********** **********...*.

58. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

59. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

60. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***********.****************... .

61. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

62. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

63. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

64. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
 ************.***************... .

65. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcgacgcatcaggcatcggc	Protospacer
 ****** ********** **********...*.

66. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

67. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagtcgcgtcagcggcgcatcaggcatcggt	Protospacer
 ****** ********** **********...*.

68. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagatgcgccagcgtcgcatcaggtaattca	Protospacer
 *******.***.***************.. *  *

69. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgtatcaggcatctgc	Protospacer
 ********************.*******... .

70. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcatccgg	Protospacer
 ***********.****************... ..

71. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgtcagcgtcgtatcaggcatctgc	Protospacer
 ********************.*******... .

72. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcaggcatccgg	Protospacer
 ***********.****************... ..

73. spacer 2.1|3598252|32|NC_002695|CRISPRCasFinder matches to NC_015512 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence) position: , mismatch: 8, identity: 0.75

agcggcacgctggattgaacaaat---ccctgggc	CRISPR spacer
tgcggcacgatgggttgaacaaatggactttg---	Protospacer
 ******** ***.**********   *..**

74. spacer 2.6|3598375|31|NC_002695|CRT,PILER-CR matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 8, identity: 0.742

ttggtgacagtttttgtcactgttttggtga	CRISPR spacer
cagtcaagagtctttggcactgttttggtga	Protospacer
. * ..* ***.**** **************

75. spacer 2.6|3598375|31|NC_002695|CRT,PILER-CR matches to NZ_CP032697 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence) position: , mismatch: 8, identity: 0.742

ttggtgacagtttttgtcactgttttggtga	CRISPR spacer
cagtcaagagtctttggcactgttttggtga	Protospacer
. * ..* ***.**** **************

76. spacer 2.6|3598375|31|NC_002695|CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

ttggtgacagtttttgtcactgttttggtga	CRISPR spacer
cagtcaagagtttttggcaccgttttggtga	Protospacer
. * ..* ******** ***.**********

77. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.743

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgttagcatcgcatcaggcatcagc	Protospacer
 ************.***.***********.....

78. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.743

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgctagcgtcgcatcaggcatctgc	Protospacer
 ***********..***************... .

79. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.743

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgctagcgtcgcatcaggcatctgc	Protospacer
 ***********..***************... .

80. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.743

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgctagcgtcgcatcaggcatctgc	Protospacer
 ***********..***************... .

81. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.743

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgctagcgtcgcatcaggcatctgc	Protospacer
 ***********..***************... .

82. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.743

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
cgataagacgcgccagcgtcgcatcgggcatccgt	Protospacer
 ***********.************.***... .

83. spacer 1.1|71545|35|NC_002695|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.743

agataagacgcgtcagcgtcgcatcaggcgctgaa	CRISPR spacer
tgataagacgcgccagcgtcgcatcagacatcagc	Protospacer
 ***********.**************.*.....

84. spacer 2.3|3598374|32|NC_002695|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 9, identity: 0.719

tttggtgacagtttttgtcactgttttggtga	CRISPR spacer
acagtcaagagtctttggcactgttttggtga	Protospacer
 . * ..* ***.**** **************

85. spacer 2.3|3598374|32|NC_002695|CRISPRCasFinder matches to NZ_CP032697 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence) position: , mismatch: 9, identity: 0.719

tttggtgacagtttttgtcactgttttggtga	CRISPR spacer
gcagtcaagagtctttggcactgttttggtga	Protospacer
 . * ..* ***.**** **************

86. spacer 2.3|3598374|32|NC_002695|CRISPRCasFinder matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tttggtgacagtttttgtcactgttttggtga	CRISPR spacer
gcagtcaagagtttttggcaccgttttggtga	Protospacer
 . * ..* ******** ***.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

296155 : 311987

Enterobacteria_phage(29.41%)

integrase,tail

attL 290585:290597|attR 313345:313357

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
290585:290597	attL	NA	NA	NA	NA
NP_308295.1\|296155_297211_-	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9
NP_308296.1\|297498_298602_+	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
NP_308297.1\|298613_299867_+	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	47.2
NP_308298.1\|300071_301046_-\|integrase	integrase	U5P434	Shigella_phage	7.2e-179	99.3
NP_308299.1\|300936_301182_-	transcription antitermination protein	J3JZZ6	Escherichia_phage	1.0e-12	90.5
NP_308300.1\|301421_301811_-	hypothetical protein	A0A0R6PGY5	Moraxella_phage	1.7e-06	36.3
NP_308301.1\|301938_302652_-	hypothetical protein	A4KWV9	Enterobacteria_phage	3.5e-130	99.2
NP_308302.1\|302752_302953_+	Cro	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
NP_308303.1\|303071_303365_+	hypothetical protein	A2SY75	Escherichia_phage	3.7e-46	100.0
NP_308307.1\|304627_305422_+\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	2.8e-80	92.9
NP_308308.1\|305421_306015_+	hypothetical protein	Q9MCR5	Enterobacteria_phage	5.2e-55	61.7
NP_308309.1\|305986_306430_-	hypothetical protein	A0A0F7LDZ0	Escherichia_phage	7.0e-81	97.3
NP_308310.1\|306450_306861_-\|tail	tail fiber protein	A0A0F7LBW5	Escherichia_phage	2.2e-65	97.6
NP_308311.1\|306890_307445_+	DNA-invertase	A0A0F7LA37	Escherichia_phage	2.8e-87	88.4
NP_308312.1\|307502_308276_-	hypothetical protein	A0A289ZIY5	Serratia_phage	5.0e-50	44.7
NP_308314.1\|309099_309843_+	transcriptional regulator	NA	NA	NA	NA
NP_308315.1\|309884_310238_-	hypothetical protein	Q9ZXG3	Shigella_phage	1.6e-40	70.8
NP_308316.1\|310805_311987_+\|integrase	integrase	Q7M297	Enterobacteria_phage	2.4e-144	61.3
313345:313357	attR	NA	NA	NA	NA

DBSCAN-SWA_2

892239 : 928363

Enterobacteria_phage(48.78%)

tail,protease,terminase,portal,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_308828.1\|892239_892458_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
NP_308829.1\|892497_892665_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	98.2
NP_308831.1\|892979_893510_+	hypothetical protein	NA	NA	NA	NA
NP_308832.1\|893720_893942_-	hypothetical protein	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
NP_308833.2\|894040_894256_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	2.9e-32	98.6
NP_308834.1\|894332_894524_-	hypothetical protein	A0A0P0ZC67	Stx2-converting_phage	1.1e-25	96.8
NP_308835.1\|894496_894679_-	hypothetical protein	A0A0P0ZAS9	Stx2-converting_phage	4.1e-27	95.0
NP_308836.1\|894675_895356_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
NP_944511.1\|895352_895997_-	hypothetical protein	A0A1I9LJN0	Stx_converting_phage	6.3e-123	99.5
NP_308837.1\|896053_896236_+	protein NinE	Q8H9Z6	Enterobacteria_phage	4.8e-28	96.7
NP_308838.1\|896232_896403_+	protein NinF	Q716C4	Shigella_phage	7.9e-25	96.4
NP_308839.1\|896392_897016_+	protein NinG	Q716C3	Shigella_phage	1.6e-94	96.1
NP_308840.1\|897012_897678_+	serine/threonin protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
NP_308841.1\|897889_898849_-	outer membrane protein	NA	NA	NA	NA
NP_308842.1\|899323_900013_+	anti-termination protein	I6PDF8	Cronobacter_phage	1.5e-58	48.1
NP_308843.2\|900223_900940_+	hypothetical protein	NA	NA	NA	NA
NP_308845.1\|901805_902021_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
NP_308846.1\|902020_902518_+	endolysin	A0A1B5FP97	Escherichia_phage	7.1e-90	98.2
NP_308847.1\|902514_902982_+	endopeptidase	A0A291AWW3	Escherichia_phage	9.4e-76	97.4
NP_308849.1\|902969_903122_+	hypothetical protein	K7PKL2	Enterobacteria_phage	8.9e-20	96.0
NP_308850.1\|903528_903807_+	hypothetical protein	NA	NA	NA	NA
NP_308851.1\|903796_904288_+	hypothetical protein	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
NP_308852.1\|904287_906390_+\|terminase	terminase large subunit	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
NP_308853.1\|906386_906599_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
NP_308854.1\|906526_907651_+\|portal	portal protein	K7PJP3	Enterobacteria_phage	5.4e-194	99.4
NP_308855.1\|907850_908108_+	hypothetical protein	A5LH29	Enterobacteria_phage	4.9e-42	100.0
NP_308856.1\|907956_910080_+\|protease	protease/scaffold protein	K7PGT6	Enterobacteria_phage	0.0e+00	99.4
NP_308857.1\|910121_910490_+	hypothetical protein	A0A291AWX2	Escherichia_phage	9.7e-52	100.0
NP_308858.1\|910482_910758_+	hypothetical protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
NP_308859.1\|910769_911348_+\|tail	minor tail protein	A5LH33	Enterobacteria_phage	6.1e-101	99.0
NP_308860.1\|911344_911746_+\|tail	minor tail protein	A5LH34	Enterobacteria_phage	2.0e-71	98.5
NP_308861.1\|911756_912500_+\|tail	major tail protein	A5LH35	Enterobacteria_phage	9.5e-131	98.0
NP_308862.1\|912560_912947_+\|tail	minor tail protein	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
NP_308863.1\|912955_913285_+\|tail	minor tail protein	A5LH37	Enterobacteria_phage	7.6e-56	100.0
NP_308864.1\|913256_916322_+\|tail	tail length tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.9
NP_308865.1\|916321_916651_+\|tail	minor tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
NP_308866.1\|916660_917359_+\|tail	minor tail protein	A5LH40	Enterobacteria_phage	3.9e-134	99.1
NP_308867.1\|917508_918108_+\|tail	tail assembly protein	K7PLW1	Enterobacteria_phage	2.7e-120	98.0
NP_308868.1\|918005_918653_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.4e-108	94.4
NP_308869.1\|918713_922127_+	host specificity protein	K7PKJ2	Enterobacteria_phage	0.0e+00	97.1
NP_308870.1\|922197_922797_+	outer membrane protein	H6WZM8	Escherichia_phage	1.8e-103	92.5
NP_308871.1\|922856_924173_+\|tail	tail fiber protein	Q6H9S9	Enterobacteria_phage	2.0e-67	95.6
NP_308872.1\|924135_924444_+	hypothetical protein	A0A0N7CBX1	Escherichia_phage	4.8e-52	98.0
NP_308873.1\|924620_925601_+	hypothetical protein	Q8HAB2	Salmonella_phage	2.9e-87	49.5
NP_308874.1\|925661_926654_+	hypothetical protein	NA	NA	NA	NA
NP_308875.1\|927481_928363_+	hypothetical protein	A5LH48	Enterobacteria_phage	8.6e-147	90.1

DBSCAN-SWA_3

1146009 : 1311174

202

Escherichia_phage(45.07%)

integrase,transposase,tail,protease,terminase,head,portal,holin

attL 1182128:1182187|attR 1271612:1272298

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_309066.1\|1146009_1147770_-\|protease	ATP-dependent protease	NA	NA	NA	NA
NP_309067.1\|1147955_1148408_+	hypothetical protein	NA	NA	NA	NA
NP_309068.1\|1148483_1149524_-	outer membrane protein A	NA	NA	NA	NA
NP_309069.1\|1149880_1150390_-	SOS cell division inhibitor	NA	NA	NA	NA
NP_309070.1\|1150608_1151238_+	hypothetical protein	NA	NA	NA	NA
NP_309071.2\|1151200_1153354_-	hypothetical protein	NA	NA	NA	NA
NP_309072.1\|1153372_1153819_-	hypothetical protein	NA	NA	NA	NA
NP_309073.1\|1153941_1155996_+	DNA helicase IV	A7KV33	Bacillus_phage	5.9e-21	27.9
NP_309074.2\|1156027_1156486_-	methylglyoxal synthase	NA	NA	NA	NA
NP_309075.1\|1156581_1157244_-	hypothetical protein	NA	NA	NA	NA
NP_309076.1\|1157416_1157830_+	hypothetical protein	NA	NA	NA	NA
NP_309077.2\|1157874_1158192_-	heat shock protein HspQ	NA	NA	NA	NA
NP_309078.2\|1158249_1159440_-	oxidoreductase	NA	NA	NA	NA
NP_309079.1\|1159534_1159813_+	acylphosphatase	NA	NA	NA	NA
NP_309080.2\|1159809_1160139_-	sulfur transfer protein TusE	NA	NA	NA	NA
NP_309081.1\|1160229_1160889_-	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.8e-48	55.3
NP_309082.1\|1161296_1162316_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	1.3e-85	49.7
NP_309084.1\|1162603_1165075_-	hypothetical protein	A0A192Y6E0	Salmonella_phage	8.8e-56	56.6
NP_309085.1\|1165168_1165360_-	hypothetical protein	NA	NA	NA	NA
NP_309086.1\|1165356_1165545_-	cell division inhibition protein	NA	NA	NA	NA
NP_309087.1\|1165811_1166117_+	hypothetical protein	NA	NA	NA	NA
NP_309088.1\|1166118_1166304_+	hypothetical protein	NA	NA	NA	NA
NP_309090.1\|1166490_1166880_-	hypothetical protein	NA	NA	NA	NA
NP_309092.1\|1167021_1167177_-	hypothetical protein	M4QQ57	Salicola_phage	3.0e-07	53.2
NP_309094.1\|1167454_1167742_-	hypothetical protein	NA	NA	NA	NA
NP_309095.1\|1167741_1167933_-	hypothetical protein	NA	NA	NA	NA
NP_309096.2\|1167960_1168362_-	regulatory protein	A0A1B5FPF4	Escherichia_phage	7.4e-13	54.5
NP_309097.1\|1168470_1168743_+	hypothetical protein	A0A0U2S629	Escherichia_phage	1.1e-12	45.8
NP_309098.1\|1168726_1169152_+	hypothetical protein	NA	NA	NA	NA
NP_309099.1\|1169358_1169814_-	hypothetical protein	NA	NA	NA	NA
NP_309100.1\|1169892_1170984_+	hypothetical protein	V5URT9	Shigella_phage	5.1e-133	70.0
NP_309101.1\|1170990_1171737_+	replication protein	A0A088CBP4	Shigella_phage	6.2e-114	84.2
NP_309102.1\|1171758_1172529_+	hypothetical protein	A0A0U2SAW4	Escherichia_phage	6.1e-80	64.5
NP_309103.1\|1172544_1172958_+	hypothetical protein	A0A0U2QQN3	Escherichia_phage	9.8e-61	89.1
NP_309104.1\|1173309_1174083_-	hypothetical protein	NA	NA	NA	NA
NP_309107.1\|1174630_1174843_+	prophage maintenance protein	A0A0U2QV81	Escherichia_phage	1.5e-25	95.4
NP_309108.1\|1175010_1175289_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
NP_309109.2\|1175290_1176340_+	hypothetical protein	U5P0K4	Shigella_phage	1.2e-110	54.9
NP_309110.1\|1176352_1176724_+	crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
NP_309111.1\|1176713_1177085_+	anti-termination protein	Q777W5	Enterobacteria_phage	4.0e-53	83.2
NP_309112.1\|1177236_1178055_+	hypothetical protein	NA	NA	NA	NA
NP_309114.1\|1178801_1179389_+	transcriptional regulator	NA	NA	NA	NA
NP_309115.1\|1180156_1182007_+	hypothetical protein	B6DZ89	Enterobacteria_phage	0.0e+00	96.1
1182128:1182187	attL	NA	NA	NA	NA
NP_309116.1\|1182182_1182509_+\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_309117.1\|1182505_1183159_+\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	7.1e-114	73.3
NP_309119.1\|1184143_1184611_-	endopeptidase	Q7AYI6	Enterobacteria_phage	2.2e-72	93.5
NP_309121.1\|1184612_1184726_-	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
NP_309123.1\|1184946_1185480_-	endolysin	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
NP_309124.1\|1185512_1185707_-	hypothetical protein	NA	NA	NA	NA
NP_309125.1\|1185675_1185912_+	hypothetical protein	NA	NA	NA	NA
NP_309126.1\|1185860_1186205_+	hypothetical protein	NA	NA	NA	NA
NP_309127.1\|1186167_1186374_-\|holin	holin	Q6H9V8	Enterobacteria_phage	4.5e-30	97.1
NP_309128.1\|1187124_1187400_+	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.4e-10	51.5
NP_309129.1\|1187475_1187856_+	hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
NP_309130.1\|1187852_1188200_+	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
NP_309131.1\|1188249_1189788_+	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
NP_309133.1\|1190051_1191980_+\|terminase	terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	3.3e-260	65.9
NP_944588.1\|1191963_1192170_+	hypothetical protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
NP_309134.1\|1192166_1193759_+\|portal	portal protein	K7P6U7	Enterobacteria_phage	8.7e-182	60.5
NP_309135.1\|1193748_1195254_+\|head,tail	head-tail preconnector protein	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
NP_309136.1\|1195290_1195638_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
NP_309137.1\|1195695_1195962_+\|head	major head protein	NA	NA	NA	NA
NP_309138.1\|1196078_1196684_+	hypothetical protein	Q687F6	Enterobacteria_phage	7.6e-102	98.0
NP_309139.2\|1196697_1197129_+\|tail	minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	68.1
NP_309140.1\|1197179_1197569_+\|tail	minor tail protein	S5MDP5	Escherichia_phage	1.1e-37	81.7
NP_309141.1\|1197549_1200129_+\|tail	tail length tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.5
NP_309142.1\|1200125_1200455_+\|tail	minor tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
NP_309143.1\|1200454_1201153_+\|tail	minor tail protein	H6WZM3	Escherichia_phage	2.9e-129	98.3
NP_309144.1\|1201271_1201907_+\|tail	tail assembly protein	A0A0P0ZE89	Stx2-converting_phage	1.9e-127	99.1
NP_309145.1\|1201804_1202485_+\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	2.5e-114	100.0
NP_309146.1\|1202438_1202645_+	hypothetical protein	NA	NA	NA	NA
NP_309147.1\|1202675_1203203_-	copper/zinc-superoxide dismutase	Q9MC02	Salmonella_phage	2.0e-58	59.9
NP_309148.1\|1203336_1206810_+	host specificity protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	96.5
NP_309149.1\|1206877_1207477_+	outer membrane protein	A0A0P0ZCF6	Stx2-converting_phage	8.8e-111	99.0
NP_309150.1\|1207535_1208855_+\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	1.0e-79	97.5
NP_309151.1\|1208856_1209126_+	hypothetical protein	A0A0P0ZEF0	Stx2-converting_phage	3.4e-46	100.0
NP_309152.1\|1209250_1209820_-	EspF-like protein	NA	NA	NA	NA
NP_309153.1\|1209795_1209978_+	hypothetical protein	NA	NA	NA	NA
NP_309154.1\|1210458_1210641_-	hypothetical protein	H6WZN3	Escherichia_phage	1.1e-21	89.7
NP_309155.1\|1211258_1212377_+	hydrogenase-1 small subunit	NA	NA	NA	NA
NP_309156.1\|1212373_1214167_+	hydrogenase 1 large subunit	NA	NA	NA	NA
NP_309157.1\|1214185_1214893_+	hydrogenase 1 b-type cytochrome subunit	NA	NA	NA	NA
NP_309158.1\|1214889_1215477_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
NP_309159.1\|1215473_1215872_+	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA
NP_309160.1\|1215868_1216726_+	hydrogenase-1 operon protein HyaF	NA	NA	NA	NA
NP_309161.1\|1216859_1218404_+	third cytochrome oxidase subunit I	NA	NA	NA	NA
NP_309162.1\|1218415_1219552_+	third cytochrome oxidase subunit II	NA	NA	NA	NA
NP_309163.1\|1219736_1221041_+	phosphoanhydride phosphorylase	NA	NA	NA	NA
NP_309164.1\|1221160_1223341_-	cryptic autophosphorylating protein tyrosine kinase Etk	NA	NA	NA	NA
NP_309165.2\|1223360_1223807_-	phosphotyrosine-protein phosphatase	NA	NA	NA	NA
NP_309166.1\|1223794_1224934_-	hypothetical protein	NA	NA	NA	NA
NP_309167.1\|1224979_1227076_-	hypothetical protein	NA	NA	NA	NA
NP_309168.1\|1227075_1227822_-	hypothetical protein	NA	NA	NA	NA
NP_309169.1\|1227818_1228463_-	regulator	NA	NA	NA	NA
NP_309170.2\|1228569_1228875_-	hypothetical protein	NA	NA	NA	NA
NP_309171.1\|1229316_1229529_-	cold shock-like protein	NA	NA	NA	NA
NP_309172.1\|1229814_1230027_+	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	7.8e-22	71.4
NP_309173.1\|1230200_1230431_+	cold shock gene	NA	NA	NA	NA
NP_309174.1\|1230641_1231715_-	hypothetical protein	NA	NA	NA	NA
NP_309175.2\|1231786_1234531_-	hybrid sensory histidine kinase TorS	A0A1V0SGX0	Hokovirus	9.2e-38	31.9
NP_309176.1\|1234613_1235642_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA
NP_309177.1\|1235614_1236307_-	DNA-binding transcriptional regulator TorR	W8CYM9	Bacillus_phage	4.5e-18	28.0
NP_309178.1\|1236436_1237609_+	trimethylamine N-oxide reductase cytochrome c-type subunit	NA	NA	NA	NA
NP_309179.1\|1237608_1240155_+	trimethylamine N-oxide reductase subunit	A0A077SK27	Escherichia_phage	1.7e-70	30.7
NP_309180.1\|1240151_1240751_+	chaperone protein TorD	NA	NA	NA	NA
NP_309181.1\|1240904_1241210_-	chaperone-modulator protein CbpM	NA	NA	NA	NA
NP_309182.1\|1241209_1242130_-	curved DNA-binding protein CbpA	A0A1V0SIM1	Klosneuvirus	2.5e-11	43.0
NP_309185.1\|1243937_1245179_+	glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
NP_309186.1\|1245216_1245444_-	hypothetical protein	NA	NA	NA	NA
YP_004935383.1\|1245464_1246010_-	TrpR binding protein WrbA	NA	NA	NA	NA
NP_309187.1\|1246039_1247350_-\|integrase	integrase	A0A1I9LJL6	Stx_converting_phage	3.2e-254	100.0
NP_309188.1\|1247402_1247687_-	excisionase	G9L654	Escherichia_phage	9.1e-50	100.0
NP_309189.1\|1247772_1248084_-	hypothetical protein	A0A1I9LJL8	Stx_converting_phage	2.1e-55	100.0
NP_309190.1\|1248143_1248488_-	hypothetical protein	Q9XJG9	Enterobacteria_phage	2.8e-61	100.0
NP_309191.1\|1248420_1249044_-	hypothetical protein	A0A1I9LJM0	Stx_converting_phage	3.1e-119	100.0
NP_309192.1\|1249047_1249335_-	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	9.2e-50	100.0
NP_309193.1\|1249336_1249555_-	hypothetical protein	A0A1I9LJM2	Stx_converting_phage	3.5e-33	100.0
NP_309194.1\|1249556_1249844_-	hypothetical protein	Q9XJH3	Enterobacteria_phage	1.9e-50	100.0
NP_309195.1\|1249773_1250241_-	hypothetical protein	Q7Y2N7	Escherichia_phage	1.3e-88	100.0
NP_309196.1\|1250113_1250887_-	hypothetical protein	A0A0N7C1Y5	Escherichia_phage	1.7e-143	100.0
NP_309197.1\|1250883_1251105_-	C4-type zinc finger TraR	A0A0N7C211	Escherichia_phage	3.8e-35	100.0
NP_309198.1\|1251203_1251419_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.0e-32	100.0
NP_309199.1\|1251495_1251687_-	hypothetical protein	A0A0N7C481	Escherichia_phage	4.3e-27	100.0
NP_309200.1\|1251659_1251842_-	hypothetical protein	A0A0N7CHV0	Escherichia_phage	4.3e-29	100.0
NP_309201.1\|1251838_1252519_-	exonuclease	A0A0N6WET1	Escherichia_phage	1.6e-132	100.0
NP_309202.1\|1252515_1253301_-	recombination protein Bet	A0A0N7BTT9	Escherichia_phage	6.3e-149	100.0
NP_309203.1\|1253306_1253723_-	hypothetical protein	A0A0P0ZBR6	Stx2-converting_phage	2.7e-74	100.0
NP_309204.1\|1253677_1253947_-	Kil protein	M1FN78	Enterobacteria_phage	1.7e-42	100.0
NP_309205.1\|1253789_1253954_-	regulatory protein cIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
NP_309206.1\|1254026_1254395_-	hypothetical protein	A0A0N7C1W2	Escherichia_phage	2.0e-65	100.0
NP_309207.1\|1254577_1254829_-	hypothetical protein	A4KWV4	Enterobacteria_phage	5.6e-43	100.0
NP_309208.1\|1254887_1255160_-	hypothetical protein	A0A0N7C217	Escherichia_phage	5.7e-41	100.0
NP_309209.1\|1255137_1255320_-	hypothetical protein	A0A0N7C057	Escherichia_phage	2.8e-28	100.0
NP_309210.1\|1255616_1255778_+	hypothetical protein	A0A0P0ZCZ3	Stx2-converting_phage	2.7e-22	100.0
NP_309211.1\|1255888_1256410_-	hypothetical protein	A0A0N7BTU4	Escherichia_phage	1.8e-88	100.0
NP_309212.1\|1256911_1257565_-	cI repressor protein	Q9KXF4	Enterobacteria_phage	2.8e-126	100.0
NP_309213.1\|1257682_1257898_+	CRO	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
NP_309214.1\|1258039_1258336_+	hypothetical protein	A0A0N7BZS9	Escherichia_phage	6.8e-48	100.0
NP_309215.1\|1258368_1258515_+	hypothetical protein	Q687G5	Enterobacteria_phage	1.1e-19	100.0
NP_309216.1\|1258507_1259407_+	replication protein O	A0A0N7C1Z7	Escherichia_phage	1.2e-164	100.0
NP_309217.1\|1259381_1260833_+	replication protein P	Q7Y2K5	Escherichia_phage	7.7e-278	100.0
NP_309218.1\|1260832_1261102_+	hypothetical protein	A0A0N7C059	Escherichia_phage	8.4e-45	100.0
NP_309219.1\|1261172_1261451_+	hypothetical protein	Q9ZWY1	Enterobacteria_phage	3.4e-49	100.0
NP_309220.1\|1261583_1261799_+	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	1.3e-32	100.0
NP_309221.1\|1261809_1262046_+	hypothetical protein	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
NP_309222.1\|1262002_1262449_+	hypothetical protein	A0A0N7C2V1	Escherichia_phage	2.4e-81	100.0
NP_309223.1\|1262445_1262973_+	DNA methylase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
NP_309224.1\|1262969_1263152_+	protein NinE	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
NP_309226.1\|1263426_1264161_+	antirepressor protein	A0A0N7C203	Escherichia_phage	1.9e-123	100.0
NP_309227.1\|1264235_1264958_+	DNA-binding protein	A0A0N7C231	Escherichia_phage	7.8e-130	100.0
NP_309228.1\|1264957_1265563_+	protein NinG	A0A1I9LJQ2	Stx_converting_phage	2.3e-98	100.0
NP_309229.1\|1265559_1265754_+	hypothetical protein	G9L694	Escherichia_phage	1.9e-30	100.0
NP_309230.1\|1265746_1266181_+	antitermination protein Q	G9L695	Escherichia_phage	2.8e-82	100.0
NP_309231.1\|1266429_1266582_+	hypothetical protein	A0A0N7C2V5	Escherichia_phage	5.2e-20	100.0
NP_309232.1\|1266964_1267924_+	Shiga toxin 2 subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
NP_309233.1\|1267935_1268205_+	Shiga toxin 2 subunit B	A0A2R2Z326	Escherichia_phage	1.2e-43	100.0
NP_309234.1\|1268691_1270596_+	hypothetical protein	A0A0N7C1Y0	Escherichia_phage	0.0e+00	100.0
NP_309235.1\|1270402_1271293_-\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_309236.1\|1271289_1271616_-\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_309237.1\|1272077_1272257_+	hypothetical protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
NP_309238.2\|1272297_1272570_+	hypothetical protein	A0A1I9LJR2	Stx_converting_phage	1.2e-22	100.0
1271612:1272298	attR	NA	NA	NA	NA
NP_309239.1\|1272646_1272862_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
NP_309240.1\|1272866_1273400_+	endolysin	A0A1I9LJR4	Stx_converting_phage	1.8e-102	100.0
NP_309241.1\|1273670_1274240_+	antirepressor protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
NP_309242.1\|1274393_1274858_+	endopeptidase	A0A1I9LJR7	Stx_converting_phage	5.8e-78	100.0
NP_309244.1\|1274889_1275183_-	Bor protein	A0A2R2X2B2	Escherichia_phage	6.8e-48	100.0
NP_309245.2\|1275290_1275536_+	hypothetical protein	A0A2R2Z338	Escherichia_phage	8.4e-44	100.0
NP_309246.1\|1275591_1276398_+\|terminase	small subunit terminase	A0A2R2Z334	Escherichia_phage	7.6e-134	100.0
NP_309247.1\|1276378_1278085_+\|terminase	terminase large subunit	A0A2R2Z350	Escherichia_phage	0.0e+00	100.0
NP_309248.1\|1278084_1280229_+\|portal	portal protein	A0A2R2Z346	Escherichia_phage	0.0e+00	100.0
NP_309249.1\|1280386_1281394_+	hypothetical protein	A0A2R2Z355	Escherichia_phage	2.3e-180	100.0
NP_309250.1\|1281417_1282632_+	hypothetical protein	A0A2R2Z358	Escherichia_phage	1.3e-233	100.0
NP_309251.1\|1282687_1283077_+	hypothetical protein	A0A2R2Z353	Escherichia_phage	9.9e-63	100.0
NP_309252.1\|1283126_1283588_+	hypothetical protein	A0A2R2Z354	Escherichia_phage	7.8e-75	100.0
NP_309253.1\|1283571_1284135_+	hypothetical protein	A0A2R2Z349	Escherichia_phage	3.2e-102	100.0
NP_309254.1\|1284134_1284785_+	hypothetical protein	A0A1I9LJS8	Stx_converting_phage	2.7e-121	100.0
NP_309255.1\|1284781_1286719_+\|tail	tail fiber protein	A0A1I9LJS9	Stx_converting_phage	1.1e-64	100.0
NP_309256.1\|1286720_1286990_+	hypothetical protein	A0A1I9LJT0	Stx_converting_phage	2.2e-45	100.0
NP_309257.1\|1287075_1287318_+	hypothetical protein	A0A0N7CHY0	Escherichia_phage	3.9e-41	100.0
NP_309258.1\|1287204_1287447_-	outer membrane protein	NA	NA	NA	NA
NP_309259.2\|1287612_1289238_+	hypothetical protein	A0A1I9LJT3	Stx_converting_phage	0.0e+00	100.0
NP_309260.1\|1289234_1290503_+\|tail	tail tip fiber protein	A0A2R2Z364	Escherichia_phage	4.9e-220	100.0
NP_309261.1\|1290517_1290796_+	outer membrane protein	A0A2R2Z367	Escherichia_phage	1.1e-50	100.0
NP_309262.1\|1290801_1291419_+	hypothetical protein	A0A2R2Z362	Escherichia_phage	1.1e-121	100.0
NP_309263.1\|1291509_1292244_+	outer membrane protein	A0A2R2Z365	Escherichia_phage	1.3e-135	100.0
NP_309264.1\|1292673_1293075_+	hypothetical protein	A0A2R2Z359	Escherichia_phage	3.7e-73	100.0
NP_309265.1\|1293168_1293825_+	hypothetical protein	A0A2R2Z361	Escherichia_phage	2.4e-109	100.0
NP_309266.1\|1293827_1294274_+	hypothetical protein	A0A1I9LJU1	Stx_converting_phage	1.4e-76	100.0
NP_309267.1\|1294283_1294535_+	hypothetical protein	A0A2R2Z351	Escherichia_phage	7.9e-13	100.0
NP_309268.1\|1294545_1295811_+	hypothetical protein	A0A1I9LJU3	Stx_converting_phage	1.4e-206	100.0
NP_309269.1\|1295880_1304262_+	hypothetical protein	A0A0N7C080	Escherichia_phage	0.0e+00	100.0
NP_309270.1\|1304547_1304733_+	hypothetical protein	A0A1I9LJU5	Stx_converting_phage	1.5e-29	100.0
NP_309271.1\|1304812_1305157_-	hypothetical protein	A0A1I9LJU6	Stx_converting_phage	4.6e-56	100.0
NP_309272.1\|1305276_1305489_-	MokW protein	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
NP_309273.1\|1305722_1306118_-	hypothetical protein	A0A1I9LJU8	Stx_converting_phage	4.7e-68	100.0
NP_309274.1\|1306117_1306777_-	hypothetical protein	A0A1I9LJU9	Stx_converting_phage	5.3e-125	100.0
NP_309275.1\|1306797_1307016_-	hypothetical protein	A0A1I9LJV0	Stx_converting_phage	4.4e-36	100.0
NP_309276.1\|1307002_1307287_-	hypothetical protein	A0A1I9LJV1	Stx_converting_phage	3.2e-47	100.0
NP_309277.1\|1307283_1307505_-	C4-type zinc finger TraR	A0A0N7C094	Escherichia_phage	1.3e-35	100.0
NP_309278.1\|1307552_1308182_-	anti-repressor protein	A0A0N6WET9	Escherichia_phage	2.6e-113	100.0
NP_309279.2\|1309330_1310659_-	transporter	Q9KX94	Enterobacteria_phage	1.8e-236	100.0
NP_309280.2\|1310679_1311174_-	hypothetical protein	Q9KX93	Enterobacteria_phage	7.6e-52	99.0

DBSCAN-SWA_4

1538644 : 1664600

161

Enterobacteria_phage(35.65%)

integrase,transposase,tail,capsid,protease,terminase,tRNA,head,portal,holin

attL 1564955:1564975|attR 1602477:1602497

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_309525.1\|1538644_1539466_+	NAD-dependent deacetylase	A0A2I7S9Y2	Vibrio_phage	5.6e-23	35.6
NP_309526.1\|1539621_1540668_-	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
NP_309527.1\|1540664_1541459_-	spermidine/putrescine ABC transporter membrane protein	NA	NA	NA	NA
NP_309528.1\|1541625_1542744_-\|integrase	integrase	Q77Z04	Phage_21	1.0e-83	43.9
NP_309529.1\|1542712_1542982_-	excisionase	NA	NA	NA	NA
NP_309530.1\|1543043_1543481_-	hypothetical protein	K7PLW7	Enterobacteria_phage	5.9e-40	60.5
NP_309531.1\|1543523_1544081_+	hypothetical protein	NA	NA	NA	NA
NP_309532.1\|1544195_1544426_-	hypothetical protein	M4QQ57	Salicola_phage	1.6e-07	55.3
NP_309533.1\|1544663_1545140_-	phage repressor	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
NP_309534.1\|1545264_1545588_+	hypothetical protein	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
NP_309535.1\|1545571_1545997_+	hypothetical protein	NA	NA	NA	NA
NP_309536.1\|1546065_1547103_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	3.3e-89	79.5
NP_309537.1\|1546963_1547557_+	replication protein	A0A0U2JGJ0	Escherichia_phage	2.5e-81	92.2
NP_309538.1\|1547590_1548307_+	hypothetical protein	A0A0U2SAW4	Escherichia_phage	2.1e-71	62.4
NP_309539.1\|1548303_1548621_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.1e-32	70.6
NP_309540.1\|1548617_1548920_+	hypothetical protein	A0A0U2SAZ1	Escherichia_phage	1.9e-45	87.9
NP_309541.1\|1548909_1549227_+	hypothetical protein	A0A1I9LJV1	Stx_converting_phage	2.1e-42	92.4
NP_309542.1\|1549180_1549498_+	hypothetical protein	A0A088CQ13	Enterobacteria_phage	4.4e-45	90.0
NP_309543.1\|1549484_1549922_+	hypothetical protein	Q8VNQ2	Enterobacteria_phage	1.9e-38	94.0
NP_309544.1\|1549923_1550115_+	hypothetical protein	G9L660	Escherichia_phage	1.6e-26	98.4
NP_309545.1\|1550117_1550705_+	hypothetical protein	K7PH57	Enterobacteria_phage	7.5e-38	45.8
NP_309547.1\|1551113_1551326_+	prophage maintenance protein	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
NP_309548.1\|1551493_1551772_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
NP_309549.1\|1551773_1552823_+	hypothetical protein	U5P0K4	Shigella_phage	1.2e-107	53.4
NP_309550.1\|1552835_1553210_+	crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.1e-33	62.7
NP_309551.1\|1553206_1554028_+	antitermination protein	K7P7B9	Enterobacteria_phage	1.3e-83	58.6
NP_309552.1\|1554440_1554941_-	hypothetical protein	NA	NA	NA	NA
NP_309553.1\|1554892_1555078_+	hypothetical protein	NA	NA	NA	NA
NP_309554.1\|1555106_1557044_+	hypothetical protein	Q6H9W1	Enterobacteria_phage	2.5e-292	76.8
NP_309555.1\|1557191_1557374_+	hypothetical protein	A0A2R2Z345	Escherichia_phage	1.0e-14	67.8
NP_309556.1\|1557411_1557681_+	hypothetical protein	A0A2R2Z348	Escherichia_phage	8.2e-08	75.3
NP_309557.1\|1557756_1557972_+\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
NP_309558.1\|1557976_1558321_+	hypothetical protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
NP_309559.1\|1558371_1558905_+	endolysin	B6DZ92	Enterobacteria_phage	3.0e-102	99.4
NP_309560.1\|1559175_1559745_+	antirepressor protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
NP_309561.1\|1559898_1560366_+	endopeptidase	A0A0H4IT10	Shigella_phage	1.6e-75	95.5
NP_309563.1\|1560389_1560614_+	hypothetical protein	NA	NA	NA	NA
NP_309564.1\|1560610_1560829_+	hypothetical protein	Q9T1L1	Enterobacteria_phage	6.4e-11	73.3
NP_309565.1\|1560970_1561111_+	hypothetical protein	NA	NA	NA	NA
NP_309566.1\|1561240_1561426_-	hypothetical protein	H6WZK6	Escherichia_phage	1.4e-19	88.5
NP_309567.1\|1561467_1561833_+	Dnase	B6DZ96	Enterobacteria_phage	9.9e-65	99.2
NP_944519.1\|1561485_1561731_-	hypothetical protein	NA	NA	NA	NA
NP_309568.1\|1562122_1562686_+\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	4.7e-90	100.0
NP_309569.1\|1562682_1564344_+\|terminase	large terminase subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	100.0
NP_309570.1\|1564407_1566345_+\|head	major head protein/prohead proteinase	B6ETE8	Enterobacteria_phage	0.0e+00	100.0
1564955:1564975	attL	NA	NA	NA	NA
NP_944520.1\|1566389_1566611_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
NP_309571.1\|1566556_1569058_+\|portal	portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	99.2
NP_309572.1\|1569137_1569464_+	hypothetical protein	A0A0P0ZDA0	Stx2-converting_phage	9.2e-54	100.0
NP_309573.1\|1569473_1569824_+\|head,tail	head-tail adapotor	A0A0P0ZCU6	Stx2-converting_phage	7.0e-60	100.0
NP_309574.1\|1569820_1570267_+	hypothetical protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
NP_309575.1\|1570263_1570608_+	hypothetical protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
NP_309576.1\|1570666_1571383_+\|tail	major tail subunit	A0A0P0ZD29	Stx2-converting_phage	2.8e-127	98.3
NP_309577.1\|1571388_1571763_+\|tail	tail assembly chaperone	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
NP_309578.1\|1571786_1572068_+\|tail	phage tail protein	A0A0P0ZDE6	Stx2-converting_phage	1.3e-45	100.0
NP_309581.1\|1575356_1575698_+\|tail	minor tail protein	A0A0P0ZBQ8	Stx2-converting_phage	3.3e-62	99.1
NP_309582.1\|1575697_1576396_+\|tail	minor tail protein	A0A0P0ZBE3	Stx2-converting_phage	3.1e-131	97.8
NP_309583.1\|1576412_1576667_-	regulatory protein	NA	NA	NA	NA
NP_309584.1\|1577189_1578068_+	antirepressor protein	I6R977	Salmonella_phage	2.5e-93	77.2
NP_309585.1\|1578121_1578859_+\|tail	tail assembly protein	B6ETG2	Enterobacteria_phage	8.2e-151	100.0
NP_309586.1\|1578756_1579041_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	1.4e-29	85.7
NP_309587.1\|1579162_1581511_+	secreted effector protein	NA	NA	NA	NA
NP_309588.1\|1582101_1585503_+	hypothetical protein	A0A0N7KZG3	Stx2-converting_phage	1.7e-219	39.2
NP_309591.1\|1586045_1586951_-\|transposase	insertion element IS2 transposase InsD	Q9ZXG3	Shigella_phage	6.3e-177	98.7
NP_309592.1\|1587112_1587274_-\|transposase	transposase	Q76S41	Shigella_phage	3.5e-22	100.0
NP_944521.1\|1587284_1587584_+	hypothetical protein	NA	NA	NA	NA
NP_309594.1\|1587811_1588087_-	hypothetical protein	NA	NA	NA	NA
NP_309595.1\|1588147_1589509_-	hypothetical protein	Q9MBM1	Phage_Gifsy-1	1.4e-50	29.2
NP_309596.1\|1589629_1589842_-	hypothetical protein	NA	NA	NA	NA
NP_309597.2\|1589872_1590703_-	spermidine/putrescine ABC transporter membrane protein	Q6GZ02	Mycoplasma_phage	6.5e-11	28.7
NP_309598.1\|1590719_1591856_-	putrescine/spermidine ABC transporter ATPase	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
NP_309599.1\|1592105_1593332_+	peptidase T	NA	NA	NA	NA
NP_309600.2\|1593380_1594502_-	hypothetical protein	NA	NA	NA	NA
NP_309601.1\|1594750_1595980_+\|integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.4e-132	55.9
NP_309603.1\|1596590_1597334_+	hypothetical protein	NA	NA	NA	NA
NP_944522.1\|1597033_1597165_-	hypothetical protein	NA	NA	NA	NA
NP_309604.1\|1597359_1597557_+	Icd-like protein	NA	NA	NA	NA
NP_309605.1\|1597549_1597735_+	hypothetical protein	NA	NA	NA	NA
NP_309606.1\|1597734_1597926_+	hypothetical protein	A0A1W6JPD9	Morganella_phage	1.7e-07	50.0
NP_309607.1\|1597915_1598158_+	hypothetical protein	NA	NA	NA	NA
NP_309608.1\|1598163_1598463_+	hypothetical protein	NA	NA	NA	NA
NP_309612.1\|1600590_1600935_-	hypothetical protein	NA	NA	NA	NA
NP_309613.1\|1600964_1601216_+	hypothetical protein	NA	NA	NA	NA
NP_309614.1\|1601212_1601623_+	single stranded DNA-binding protein	NA	NA	NA	NA
NP_309615.1\|1601633_1601906_+	transcriptional activator	NA	NA	NA	NA
NP_309616.2\|1601952_1602255_+	hypothetical protein	NA	NA	NA	NA
NP_309617.1\|1602547_1603705_+\|head	major head protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.8e-137	64.9
1602477:1602497	attR	NA	NA	NA	NA
NP_309618.2\|1603744_1604317_+\|head,protease	prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-61	63.5
NP_309619.1\|1604318_1605530_+\|head,portal	head portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.2e-188	79.2
NP_309620.1\|1605526_1605865_+\|head,tail	head-tail adaptor	A0A2H4JHK5	uncultured_Caudovirales_phage	1.9e-30	52.7
NP_309621.1\|1605861_1606158_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.0e-32	65.3
NP_309622.1\|1606157_1606598_+	hypothetical protein	A0A2H4JAS8	uncultured_Caudovirales_phage	1.2e-61	71.9
NP_309623.1\|1606590_1606764_+	hypothetical protein	NA	NA	NA	NA
NP_309624.1\|1606887_1607244_+\|terminase	terminase small subunit	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
NP_309625.1\|1607227_1608889_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	9.8e-277	81.4
NP_309626.1\|1608902_1609184_+	hypothetical protein	NA	NA	NA	NA
NP_309628.1\|1610040_1611501_-	sensor protein PhoQ	NA	NA	NA	NA
NP_309629.1\|1611500_1612172_-	PhoP family transcriptional regulator	NA	NA	NA	NA
NP_309630.1\|1612340_1613711_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
NP_309631.1\|1613714_1614356_-	hypothetical protein	NA	NA	NA	NA
NP_309632.2\|1614391_1615498_-\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
NP_309633.1\|1615551_1616013_-	phosphohydrolase	NA	NA	NA	NA
NP_309634.3\|1616022_1616676_-	23S rRNA pseudouridine(2457) synthase	NA	NA	NA	NA
NP_309635.1\|1616847_1618098_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
NP_309636.1\|1618211_1619354_-	intergrase	O21940	Phage_21	8.1e-206	100.0
NP_309637.1\|1619343_1619580_-	excisionase	NA	NA	NA	NA
NP_309638.1\|1619683_1620508_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	3.8e-96	69.3
NP_309639.1\|1620504_1621206_+	replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.3e-129	99.6
NP_309640.1\|1621202_1621505_+	Ren protein	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
NP_309641.1\|1621572_1621905_+	multidrug efflux protein	NA	NA	NA	NA
NP_309642.1\|1622149_1623676_+	hypothetical protein	Q3HQV4	Burkholderia_phage	1.2e-31	31.1
NP_309643.1\|1624177_1624633_+	hypothetical protein	I6PD71	Cronobacter_phage	8.6e-58	64.9
NP_309644.1\|1624632_1624803_+	prophage protein NinE	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
NP_309645.1\|1624795_1625086_+	hypothetical protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
NP_309646.1\|1625082_1625445_+	endodeoxyribonuclease RUS	K7PM48	Enterobacteria_phage	7.3e-60	95.7
NP_944523.1\|1625441_1625582_+	hypothetical protein	K7PHH3	Enterobacteria_phage	7.7e-10	71.1
NP_309647.1\|1625578_1626268_+	antitermination protein	I6PDF8	Cronobacter_phage	1.7e-57	48.9
NP_309648.1\|1626577_1626895_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.3e-40	86.1
NP_309649.1\|1626881_1627358_+	endolysin	K7PKV2	Enterobacteria_phage	4.3e-84	95.6
NP_309650.1\|1627354_1627816_+	endopeptidase	A0A0K2FJD0	Enterobacteria_phage	2.7e-75	97.4
NP_309651.1\|1627574_1627757_+	lipoprotein Rz1	K7PHU6	Enterobacteria_phage	4.7e-15	93.3
NP_309652.1\|1627847_1628141_-	Bor protein	K7PL54	Enterobacteria_phage	1.5e-47	99.0
NP_309653.2\|1628432_1628843_-	hypothetical protein	C6ZCX4	Enterobacteria_phage	2.7e-71	98.5
NP_309654.1\|1629128_1629335_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
NP_309655.1\|1629499_1629694_-	hypothetical protein	A0A0K2FIR8	Escherichia_phage	1.5e-27	98.4
NP_309656.1\|1630082_1630628_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	2.6e-93	97.8
NP_309657.1\|1630602_1632528_+\|terminase	terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
NP_309658.1\|1632524_1632731_+\|head,tail	head-to-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
NP_309659.1\|1632727_1634329_+\|portal	portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.7
NP_309660.1\|1634309_1635629_+\|capsid	minor capsid protein	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
NP_309661.1\|1635638_1635971_+\|capsid	major capsid protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
NP_309662.1\|1636026_1637052_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.7e-191	98.8
NP_309663.1\|1637093_1637492_+	DNA packaging protein	A0A0K2FIR1	Enterobacteria_phage	3.5e-63	98.5
NP_309664.1\|1637503_1637857_+\|capsid	minor capsid protein	A0A2R9YJJ5	Escherichia_phage	2.9e-61	98.3
NP_309665.1\|1637868_1638447_+\|tail	minor tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
NP_309666.1\|1638443_1638839_+\|tail	minor tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
NP_309667.1\|1638846_1639587_+\|tail	major tail protein V	A0A0K2FJ05	Enterobacteria_phage	8.3e-127	95.9
NP_309668.1\|1639602_1640025_+\|tail	minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	96.4
NP_309669.1\|1640006_1640441_+\|tail	minor tail protein	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
NP_309670.1\|1640433_1642983_+\|tail	tail length tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	87.3
NP_309671.1\|1642979_1643309_+\|tail	minor tail protein	A0A2R9YJM0	Escherichia_phage	2.5e-59	100.0
NP_309672.1\|1643308_1644007_+\|tail	minor tail protein	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
NP_309673.1\|1644012_1644756_+\|tail	tail assembly protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
NP_309674.1\|1644653_1645325_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.1e-104	99.6
NP_309675.1\|1645385_1648784_+	host specificity protein	K7PKJ2	Enterobacteria_phage	0.0e+00	90.7
NP_309676.1\|1648850_1649450_+	membrane protein	A0A291AWV3	Escherichia_phage	8.8e-111	99.0
NP_309677.1\|1649514_1652430_+\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	1.5e-57	98.3
NP_309678.1\|1652429_1653011_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.3e-100	93.2
NP_309679.1\|1653130_1654021_-	catalase	NA	NA	NA	NA
NP_309680.1\|1654039_1654546_-	hypothetical protein	NA	NA	NA	NA
NP_309681.1\|1654582_1655083_-	hypothetical protein	NA	NA	NA	NA
NP_309682.1\|1655161_1655344_-	hypothetical protein	NA	NA	NA	NA
NP_309683.1\|1655841_1656273_-	hypothetical protein	NA	NA	NA	NA
NP_309684.1\|1656566_1656815_+	hypothetical protein	K7PMH7	Enterobacteria_phage	1.7e-12	76.5
NP_309685.1\|1656890_1657271_+	hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
NP_309686.1\|1657267_1657615_+	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
NP_309687.1\|1657664_1659203_+	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
NP_309689.1\|1659505_1660990_-	hypothetical protein	NA	NA	NA	NA
NP_309690.1\|1661176_1662130_-\|protease	outer membrane protease	NA	NA	NA	NA
NP_309691.1\|1662628_1663213_+	hypothetical protein	NA	NA	NA	NA
NP_309692.1\|1663386_1663713_+\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_309693.1\|1663709_1664600_+\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0

DBSCAN-SWA_5

1757548 : 1831088

Stx2-converting_phage(38.0%)

integrase,tail,protease,terminase,head,portal,holin

attL 1757385:1757412|attR 1815560:1815587

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1757385:1757412	attL	NA	NA	NA	NA
NP_309784.1\|1757548_1758679_-\|integrase	integrase	O21940	Phage_21	3.4e-103	51.4
NP_309785.1\|1758656_1758905_-	excisionase	NA	NA	NA	NA
NP_309786.1\|1758969_1761441_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.1e-58	58.2
NP_309787.1\|1761533_1761725_-	hypothetical protein	NA	NA	NA	NA
NP_309788.1\|1761721_1761910_-	DicB	NA	NA	NA	NA
NP_309789.1\|1762383_1762617_+	hypothetical protein	NA	NA	NA	NA
NP_309790.1\|1762594_1763002_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	7.0e-11	37.8
NP_309791.1\|1763024_1763243_-	hypothetical protein	NA	NA	NA	NA
NP_944527.1\|1763315_1763615_-	hypothetical protein	NA	NA	NA	NA
NP_309792.1\|1763878_1764286_-	transcriptional repressor DicA	I6PD69	Cronobacter_phage	9.8e-29	49.6
NP_309793.1\|1764362_1764590_+	DNA-binding transcriptional regulator DicC	NA	NA	NA	NA
NP_309794.1\|1764573_1765125_+	hypothetical protein	NA	NA	NA	NA
NP_309795.1\|1765096_1766137_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	7.9e-91	87.2
NP_309796.1\|1765925_1766591_+	phage replication protein	A0A0U2JGJ0	Escherichia_phage	1.9e-85	98.7
NP_309799.1\|1768218_1768977_+	colonization factor	NA	NA	NA	NA
NP_309800.1\|1769255_1769468_+	prophage maintenance protein	A0A0U2QV81	Escherichia_phage	1.4e-15	70.0
NP_309801.1\|1769688_1769946_+	hypothetical protein	NA	NA	NA	NA
NP_309802.1\|1770015_1770294_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.2e-11	48.4
NP_309803.1\|1770295_1771342_+	hypothetical protein	U5P0K4	Shigella_phage	4.2e-108	54.2
NP_309804.1\|1771354_1771714_+	endonuclease	V5URS4	Shigella_phage	3.6e-35	60.9
NP_309805.1\|1771722_1772253_+	hypothetical protein	A0A0U2S606	Escherichia_phage	9.3e-72	72.6
NP_309806.1\|1772371_1772692_+	lipoprotein	S5MQK8	Escherichia_phage	2.5e-35	97.4
NP_309807.1\|1772842_1773901_+	DNA methylase	S5MDR0	Escherichia_phage	1.1e-199	94.3
NP_309808.1\|1774697_1776551_+	hypothetical protein	H6WZJ9	Escherichia_phage	0.0e+00	97.9
NP_309809.1\|1776700_1776916_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
NP_309810.1\|1776920_1777265_+	hypothetical protein	B6DZ91	Enterobacteria_phage	4.5e-59	100.0
NP_309811.1\|1777315_1777849_+	endolysin	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
NP_309812.1\|1778119_1778689_+	antirepressor protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
NP_309813.1\|1778842_1779310_+	endopeptidase	Q9EYC9	Enterobacteria_phage	1.2e-78	100.0
NP_309815.1\|1779672_1779900_-	hypothetical protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
NP_309816.1\|1779941_1780307_+	Dnase	B6DZ96	Enterobacteria_phage	9.9e-65	99.2
NP_944528.1\|1779959_1780205_-	hypothetical protein	NA	NA	NA	NA
NP_309818.1\|1780596_1781160_+\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	4.7e-90	100.0
NP_309819.1\|1781156_1782818_+\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	100.0
NP_309820.1\|1782881_1784819_+\|head,protease	major head protein/prohead protease	B6ETE8	Enterobacteria_phage	0.0e+00	100.0
NP_309822.1\|1785030_1787610_+\|portal	portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	97.3
NP_309823.1\|1787612_1787939_+	hypothetical protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
NP_309824.1\|1787948_1788299_+\|head,tail	head-tail adaptor	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
NP_309825.1\|1788295_1788742_+	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
NP_309826.1\|1788738_1789083_+	hypothetical protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
NP_309827.1\|1789012_1789858_+\|tail	major tail subunit	A0A0N7KZJ9	Stx2-converting_phage	5.3e-154	97.9
NP_309828.1\|1789863_1790238_+\|tail	tail assembly chaperone	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
NP_309829.1\|1790261_1790543_+	hypothetical protein	A0A0P0ZDE6	Stx2-converting_phage	1.3e-45	100.0
NP_309830.1\|1790595_1793676_+\|tail	tail length tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	94.2
NP_309831.1\|1793668_1794010_+\|tail	minor tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
NP_309832.1\|1794009_1794447_+\|tail	minor tail protein	A0A0P0ZBE3	Stx2-converting_phage	6.5e-63	100.0
NP_309833.1\|1794634_1798111_+	host specificity protein	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.3
NP_309834.1\|1798178_1798778_+	outer membrane protein	Q9EV15	Enterobacteria_phage	1.6e-107	96.5
NP_309835.1\|1798929_1800243_+\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	2.1e-80	97.9
NP_309836.1\|1800244_1800514_+	hypothetical protein	A0A1U9AJC2	Stx1_converting_phage	3.2e-44	98.9
NP_309839.1\|1801540_1802866_-	hypothetical protein	H6WZN2	Escherichia_phage	1.9e-214	81.2
NP_309840.1\|1803526_1804219_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	1.3e-110	88.6
NP_309841.1\|1804692_1805604_+	hypothetical protein	A5LH48	Enterobacteria_phage	3.0e-134	82.2
NP_309842.1\|1805669_1806239_+	hypothetical protein	NA	NA	NA	NA
NP_309845.1\|1807204_1808743_-	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
NP_309846.1\|1808792_1809140_-	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
NP_309847.1\|1809136_1809517_-	hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
NP_309848.1\|1809856_1810135_-	hypothetical protein	NA	NA	NA	NA
NP_309851.1\|1810845_1811493_-	hypothetical protein	B6ETE1	Enterobacteria_phage	1.6e-41	41.1
NP_309852.1\|1811676_1812267_+	bfpT-regulated chaperone-like protein	NA	NA	NA	NA
NP_309856.1\|1815737_1816244_-	hypothetical protein	NA	NA	NA	NA
1815560:1815587	attR	NA	NA	NA	NA
NP_309857.1\|1816289_1816790_-	hypothetical protein	NA	NA	NA	NA
NP_309858.2\|1816875_1817055_-	hypothetical protein	NA	NA	NA	NA
NP_309859.1\|1817435_1818242_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
NP_309860.1\|1818241_1819435_-	tryptophan synthase subunit beta	NA	NA	NA	NA
NP_309861.1\|1819446_1820808_-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	A0A0P0IR83	Acinetobacter_phage	4.3e-36	40.2
NP_309862.1\|1820808_1822404_-	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.0e-52	38.2
NP_309863.1\|1822403_1823966_-	anthranilate synthase component I	NA	NA	NA	NA
NP_309865.1\|1824239_1825121_+	hypothetical protein	NA	NA	NA	NA
NP_309866.4\|1825117_1825738_+	hypothetical protein	NA	NA	NA	NA
NP_309867.1\|1825765_1827349_+	hypothetical protein	NA	NA	NA	NA
NP_309868.1\|1827561_1828434_+	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA
NP_309869.1\|1828473_1829064_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
NP_309870.1\|1829060_1829819_-	short chain dehydrogenase	A0A0N9R355	Chrysochromulina_ericina_virus	6.7e-07	23.9
NP_309871.1\|1830038_1831088_+\|protease	periplasmic protease	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_6

1909208 : 1973142

Escherichia_phage(40.3%)

transposase,tail,protease,terminase,tRNA,head,portal,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_309945.1\|1909208_1910099_-\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_309946.1\|1910095_1910422_-\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_309947.1\|1910447_1911245_-	pump protein	NA	NA	NA	NA
NP_309948.1\|1911281_1912727_-	hypothetical protein	NA	NA	NA	NA
NP_309949.2\|1912726_1914037_-	aminohydrolase	NA	NA	NA	NA
NP_309950.1\|1914212_1915121_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
NP_309951.1\|1915450_1916014_+	hypothetical protein	NA	NA	NA	NA
NP_309952.2\|1916034_1917267_-	hypothetical protein	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
NP_309953.1\|1917521_1918505_+	zinc transporter	NA	NA	NA	NA
NP_309954.1\|1918982_1920356_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
NP_309955.1\|1920484_1921420_-\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
NP_309956.1\|1921471_1922707_-\|transposase	transposase	A0A0U2JGI6	Escherichia_phage	3.8e-241	99.5
NP_309957.2\|1922708_1922924_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
NP_309958.1\|1923023_1923212_-	hypothetical protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
NP_309959.1\|1923249_1923399_-	restriction alleviation and modification protein	A0A0U2QQP4	Escherichia_phage	2.5e-22	95.9
NP_309960.1\|1923454_1924264_-	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	4.0e-106	71.5
NP_309961.1\|1924256_1926857_-	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	6.1e-249	63.5
NP_309962.1\|1926958_1927234_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	4.0e-42	95.6
NP_944530.1\|1927308_1927485_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	4.4e-18	72.4
NP_309963.1\|1927478_1927712_-	FtsZ inhibitor protein	A0A0U2RTC4	Escherichia_phage	2.8e-36	98.6
NP_309964.2\|1928141_1928630_+	phage superinfection exclusion protein	NA	NA	NA	NA
NP_309965.1\|1928626_1928782_-	hypothetical protein	M4QQ57	Salicola_phage	6.1e-08	55.3
NP_309967.1\|1928792_1928972_-	hypothetical protein	NA	NA	NA	NA
NP_309968.1\|1929214_1929526_-	transcriptional regulator	G8C7L8	Escherichia_phage	1.5e-08	42.4
NP_309969.1\|1929713_1929968_+	regulatory protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
NP_309970.1\|1929964_1930387_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.3e-68	92.9
NP_309971.1\|1930464_1931253_+	hypothetical protein	G9L6A8	Escherichia_phage	2.0e-41	64.3
NP_309972.1\|1931259_1932006_+	replication protein	V5UQI5	Shigella_phage	5.6e-115	81.3
NP_309973.1\|1931977_1932790_+	hypothetical protein	A0A0U2SAW4	Escherichia_phage	7.5e-121	90.5
NP_309975.1\|1932805_1933228_+	hypothetical protein	A0A0U2QQN3	Escherichia_phage	3.1e-62	88.5
NP_309976.1\|1933333_1933546_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	5.8e-33	94.3
NP_309977.1\|1933797_1934061_+	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
NP_309978.1\|1934071_1934233_+	hypothetical protein	A0A192Y6F5	Salmonella_phage	3.2e-15	89.4
NP_309979.1\|1934311_1934557_+	hypothetical protein	Q9G078	Enterobacteria_phage	5.9e-13	70.7
NP_309980.1\|1934988_1936140_+	methyltransferase	Q8JKX6	Natrialba_phage	1.0e-22	36.9
NP_309981.1\|1936107_1937097_-	hypothetical protein	NA	NA	NA	NA
NP_309982.1\|1937096_1938488_-	hypothetical protein	NA	NA	NA	NA
NP_309983.1\|1938987_1939587_+	hypothetical protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
NP_309984.1\|1939586_1939877_+	hypothetical protein	A0A0U2KD41	Escherichia_phage	3.3e-47	87.5
NP_309985.1\|1939873_1940428_+	antitermination protein	A0A0U2S606	Escherichia_phage	5.0e-68	69.1
NP_309986.1\|1940989_1941421_+	hypothetical protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
NP_309987.1\|1941417_1941585_+	hypothetical protein	H6WZJ7	Escherichia_phage	1.1e-10	74.5
NP_309988.1\|1941995_1943849_+	hypothetical protein	B6DZ89	Enterobacteria_phage	0.0e+00	96.4
NP_309989.1\|1943998_1944214_+\|holin	holin	Q6H9V8	Enterobacteria_phage	1.3e-32	97.2
NP_309990.1\|1944218_1944563_+	hypothetical protein	A0A0P0ZD64	Stx2-converting_phage	1.8e-55	95.6
NP_309991.1\|1944613_1945147_+	endolysin	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
NP_309992.1\|1945417_1945987_+	antirepressor protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
NP_309993.1\|1946140_1946608_+	endopeptidase	Q9EYC9	Enterobacteria_phage	1.2e-78	100.0
NP_309994.1\|1946970_1947198_-	hypothetical protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
NP_309995.1\|1947239_1947605_+	DNase	B6DZ96	Enterobacteria_phage	9.9e-65	99.2
NP_944531.1\|1947257_1947503_-	hypothetical protein	NA	NA	NA	NA
NP_309997.1\|1947894_1948458_+\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	4.7e-90	100.0
NP_309998.1\|1948454_1950116_+\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	100.0
NP_309999.1\|1950179_1952117_+\|head,protease	phage major head protein/prohead protease	B6ETE8	Enterobacteria_phage	0.0e+00	100.0
NP_944532.1\|1952161_1952383_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	1.3e-35	98.6
NP_310001.1\|1952328_1953693_+\|portal	portal protein	A0A0P0ZCX8	Stx2-converting_phage	6.4e-258	98.5
NP_310002.1\|1953689_1954913_+	hypothetical protein	A0A0P0ZCZ4	Stx2-converting_phage	9.9e-101	98.0
NP_310003.1\|1954909_1955236_+	hypothetical protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
NP_310004.1\|1955245_1955596_+\|head,tail	head-tail adaptor	H6WZL5	Escherichia_phage	2.0e-59	100.0
NP_310005.1\|1955592_1956039_+	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
NP_310006.1\|1956035_1956380_+	hypothetical protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
NP_310007.1\|1956448_1957165_+\|tail	major tail protein	A0A0P0ZD29	Stx2-converting_phage	4.0e-126	97.5
NP_310008.1\|1957170_1957545_+\|tail	tail assembly chaperon	A0A0N7KZA2	Stx2-converting_phage	3.0e-64	99.2
NP_310009.1\|1957568_1957850_+	hypothetical protein	A0A0P0ZDE6	Stx2-converting_phage	1.3e-45	100.0
NP_310010.1\|1957901_1960982_+\|tail	tail length tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	93.3
NP_310011.1\|1960974_1961316_+\|tail	minor tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
NP_310012.1\|1961315_1962014_+\|tail	minor tail protein	H6WZM3	Escherichia_phage	1.3e-129	97.4
NP_310013.1\|1962024_1962768_+\|tail	tail assembly protein	A0A0P0ZE89	Stx2-converting_phage	5.4e-150	99.2
NP_310014.1\|1962665_1963346_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	5.7e-106	91.1
NP_310015.1\|1963299_1963506_+	hypothetical protein	NA	NA	NA	NA
NP_310016.1\|1963536_1964064_-	copper/zinc-superoxide dismutase	Q9MC02	Salmonella_phage	1.8e-59	60.5
NP_310017.1\|1964197_1967695_+	host specificity protein	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	94.3
NP_310018.1\|1967765_1968365_+	outer membrane protein	B6ETG5	Enterobacteria_phage	3.0e-111	100.0
NP_310019.1\|1968657_1969743_+\|tail	tail fiber protein	A0A0P0ZD68	Stx2-converting_phage	1.1e-37	97.4
NP_310020.1\|1969672_1970014_+	hypothetical protein	G3CFN8	Escherichia_phage	2.1e-56	92.9
NP_310021.1\|1970126_1970702_+	hypothetical protein	H6WZN1	Escherichia_phage	5.3e-89	88.4
NP_310022.1\|1970774_1971404_+	hypothetical protein	B6DZB9	Enterobacteria_phage	1.3e-77	92.2
NP_310023.1\|1971485_1972127_+	hypothetical protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
NP_310024.2\|1972707_1973142_-	filament protein	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8

DBSCAN-SWA_7

2155110 : 2253837

134

Enterobacteria_phage(30.63%)

integrase,transposase,tail,capsid,protease,terminase,head,portal,holin

attL 2158174:2158233|attR 2203952:2204235

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_310177.1\|2155110_2155314_+	hypothetical protein	J9Q802	Salmonella_phage	1.6e-11	55.2
NP_310178.1\|2155349_2156810_-	oxidoreductase	H8ZJP8	Ostreococcus_tauri_virus	1.9e-42	29.6
NP_310179.1\|2156898_2158182_-	transporter	NA	NA	NA	NA
2158174:2158233	attL	NA	NA	NA	NA
NP_310180.1\|2158313_2158556_+	damage-inducible protein	Q687E4	Enterobacteria_phage	2.4e-27	83.3
NP_310181.1\|2158717_2159359_-	hypothetical protein	B6DZC0	Enterobacteria_phage	8.6e-104	96.2
NP_310182.1\|2159440_2160070_-	hypothetical protein	B6DZB9	Enterobacteria_phage	6.1e-78	91.5
NP_310183.1\|2160142_2160718_-	hypothetical protein	H6WZN1	Escherichia_phage	4.1e-89	88.9
NP_310184.1\|2160831_2161101_-	hypothetical protein	H6WZN0	Escherichia_phage	6.4e-45	98.9
NP_310186.2\|2161514_2162324_-\|tail	tail fiber protein	Q9EYE8	Enterobacteria_phage	2.1e-59	100.0
NP_310187.1\|2162388_2162988_-	outer host membrane protein	A0A0P0ZE39	Stx2-converting_phage	1.2e-110	100.0
NP_310188.1\|2163055_2166535_-	host specificity protein	B6DZB5	Enterobacteria_phage	0.0e+00	99.4
NP_310189.1\|2166775_2167453_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.0e-120	100.0
NP_310190.1\|2167350_2168034_-\|tail	tail assembly protein	Q9EYE4	Enterobacteria_phage	5.2e-107	100.0
NP_944539.1\|2167862_2168093_-	hypothetical protein	Q9EYE4	Enterobacteria_phage	5.1e-35	100.0
NP_310191.1\|2168103_2168802_-\|tail	minor tail protein	A0A0P0ZBE3	Stx2-converting_phage	1.2e-130	97.8
NP_310192.1\|2168801_2169131_-\|tail	minor tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
NP_310193.1\|2169127_2171740_-\|tail	tail length tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	95.9
NP_310194.1\|2171720_2172134_-\|tail	minor tail protein	Q687F4	Enterobacteria_phage	3.2e-43	83.2
NP_310195.1\|2172160_2172583_-\|tail	minor tail protein	Q687F5	Enterobacteria_phage	2.4e-70	97.9
NP_310196.1\|2172596_2173349_-	hypothetical protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
NP_310197.1\|2173356_2173752_-\|tail	minor tail protein	A0A2R9YJI2	Escherichia_phage	3.3e-58	81.7
NP_310198.1\|2173748_2174282_-\|tail	minor tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-58	66.7
NP_310199.1\|2174296_2174650_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.9e-57	92.3
NP_310200.1\|2174661_2175060_-	DNA-packaging protein	A0A0K2FIR1	Enterobacteria_phage	3.5e-63	98.5
NP_310201.1\|2175101_2176127_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.7e-191	98.8
NP_310202.1\|2176182_2176515_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
NP_310203.1\|2176524_2177844_-\|capsid	minor capsid protein	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
NP_310204.1\|2177824_2179426_-\|portal	portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.7
NP_310205.1\|2179422_2179629_-\|head,tail	head-to-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
NP_310206.1\|2179625_2181551_-\|terminase	terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.1
NP_310207.1\|2181525_2182071_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	4.7e-79	82.8
NP_310208.1\|2182457_2182682_+	hypothetical protein	A0A0K2FIR8	Escherichia_phage	1.7e-19	90.6
NP_310209.1\|2182763_2183078_-	transcriptional regulator	NA	NA	NA	NA
NP_310210.1\|2183541_2184000_-	endopeptidase	Q7AYI6	Enterobacteria_phage	4.4e-62	83.4
NP_310212.1\|2184157_2184727_-	antirepressor protein	A0A1I9LJR6	Stx_converting_phage	9.0e-105	99.5
NP_310213.1\|2184997_2185531_-	endolysin	B6DZ92	Enterobacteria_phage	3.0e-102	99.4
NP_310214.1\|2185581_2185926_-	hypothetical protein	B6DZ91	Enterobacteria_phage	4.5e-59	100.0
NP_310215.1\|2185930_2186137_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.0e-31	98.5
NP_944540.1\|2186144_2186306_+	hypothetical protein	NA	NA	NA	NA
NP_310216.1\|2186627_2188436_-	hypothetical protein	B6DZ89	Enterobacteria_phage	0.0e+00	98.8
NP_310217.1\|2188913_2189345_-	hypothetical protein	H6WZJ6	Escherichia_phage	1.6e-66	96.5
NP_310218.1\|2189795_2190383_-	transcriptional regulator	NA	NA	NA	NA
NP_310219.1\|2190644_2190842_-	hypothetical protein	S5MQK8	Escherichia_phage	8.9e-28	96.9
NP_310220.1\|2191066_2191621_-	anti-terminator protein	A0A0U2S606	Escherichia_phage	1.0e-65	67.4
NP_310221.1\|2191683_2191989_-	crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	7.1e-32	66.3
NP_310222.2\|2192001_2193051_-	hypothetical protein	U5P0K4	Shigella_phage	1.2e-110	54.6
NP_310223.1\|2193052_2193325_-	hypothetical protein	S4TNP0	Salmonella_phage	1.1e-12	53.0
NP_310224.1\|2193446_2193791_-	hypothetical protein	A0A1I9LJU6	Stx_converting_phage	6.1e-56	99.1
NP_310225.1\|2193910_2194123_-	MokW protein	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
NP_310226.1\|2194356_2194914_-	hypothetical protein	A0A0N7KZV3	Escherichia_phage	2.8e-34	41.7
NP_310227.1\|2194915_2195134_-	hypothetical protein	A0A2R2Z311	Escherichia_phage	2.3e-21	72.2
NP_310228.1\|2195261_2195573_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	7.2e-56	92.2
NP_310229.1\|2195565_2195793_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	5.1e-11	49.3
NP_310230.1\|2195789_2196071_-	hypothetical protein	A0A222YXX1	Escherichia_phage	1.0e-29	73.6
NP_310231.1\|2196103_2196838_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	3.4e-72	62.8
NP_310232.1\|2196853_2197516_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.4e-79	90.2
NP_310233.1\|2197307_2198351_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.4e-82	65.1
NP_310234.1\|2198419_2198845_-	hypothetical protein	NA	NA	NA	NA
NP_310235.1\|2198828_2199071_-	regulatory protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
NP_310236.1\|2199276_2199801_+	repressor protein	A0A1W6JP50	Morganella_phage	1.3e-12	32.9
NP_310237.1\|2200012_2200246_+	hypothetical protein	M4QQ57	Salicola_phage	7.8e-07	53.2
NP_310238.1\|2200257_2200896_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
NP_310239.1\|2200896_2201106_-	hypothetical protein	NA	NA	NA	NA
NP_310240.1\|2201154_2201415_-	hypothetical protein	NA	NA	NA	NA
NP_310241.1\|2201670_2201859_+	cell division inhibitor	NA	NA	NA	NA
NP_310242.1\|2201855_2202044_+	hypothetical protein	NA	NA	NA	NA
NP_310243.1\|2202136_2203381_+	exonuclease	H6WRX1	Salmonella_phage	1.4e-86	50.3
NP_310244.1\|2203362_2203914_+\|integrase	integrase	Q859D2	Escherichia_coli_phage	6.5e-60	63.0
NP_310245.1\|2204019_2204274_+	hypothetical protein	H6WZN4	Escherichia_phage	3.4e-11	82.5
2203952:2204235	attR	NA	NA	NA	NA
NP_310246.1\|2204276_2205167_-\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_310247.1\|2205163_2205490_-\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_310248.1\|2205696_2206566_-\|transposase	transposase	A0A218MNI5	uncultured_virus	1.2e-47	45.7
NP_310249.1\|2206609_2206990_+	hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
NP_310250.1\|2206986_2207334_+	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
NP_310251.1\|2207383_2208922_+	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
NP_310253.1\|2209504_2209876_-	hypothetical protein	A0A0P0ZBX1	Stx2-converting_phage	1.7e-67	99.2
NP_310254.1\|2210139_2210487_-	hypothetical protein	B6ETE2	Enterobacteria_phage	6.1e-48	96.8
NP_310256.1\|2210865_2211375_-	hypothetical protein	H6WZN1	Escherichia_phage	3.3e-50	60.7
NP_310257.1\|2211554_2211824_-	hypothetical protein	H6WZN0	Escherichia_phage	6.4e-45	98.9
NP_310258.1\|2211825_2213049_-\|tail	tail fiber protein	B6DZB7	Enterobacteria_phage	8.7e-81	94.8
NP_310259.1\|2213113_2213713_-	outer membrane protein	A0A0P0ZE39	Stx2-converting_phage	1.2e-110	100.0
NP_310263.1\|2217596_2218277_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	1.7e-110	97.8
NP_310264.1\|2218174_2218849_-\|tail	tail assembly protein	A0A0P0ZE89	Stx2-converting_phage	6.4e-134	96.9
NP_310265.1\|2218928_2219627_-\|tail	minor tail protein	H6WZM3	Escherichia_phage	1.1e-128	97.0
NP_310266.1\|2219626_2219968_-\|tail	minor tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
NP_310267.1\|2219960_2223203_-\|tail	tail length tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	97.4
NP_310268.1\|2223250_2223532_-\|tail	tail protein	A0A0P0ZED8	Stx2-converting_phage	1.8e-45	100.0
NP_310269.1\|2223555_2223930_-\|tail	tail assembly chaperone	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
NP_310270.1\|2223944_2224661_-\|tail	major tail subunit	A0A0P0ZDV1	Stx2-converting_phage	1.6e-127	100.0
NP_310271.1\|2224726_2225071_-	hypothetical protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
NP_310272.1\|2225067_2225514_-	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
NP_310273.1\|2225510_2225861_-\|head,tail	head-tail adaptor	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
NP_310274.1\|2225870_2226197_-	hypothetical protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
NP_310275.1\|2226199_2228779_-\|portal	portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	97.3
NP_944541.1\|2228724_2228946_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	1.3e-35	98.6
NP_310277.1\|2228990_2230928_-\|head,protease	major head protein/prohead protease	B6ETE8	Enterobacteria_phage	0.0e+00	100.0
NP_310278.1\|2230991_2232653_-\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	100.0
NP_310279.1\|2232649_2233213_-\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	4.7e-90	100.0
NP_310280.1\|2233396_2233540_-	hypothetical protein	NA	NA	NA	NA
NP_310281.1\|2233502_2233868_-	Dnase	B6DZ96	Enterobacteria_phage	9.9e-65	99.2
NP_310282.1\|2233909_2234137_+	hypothetical protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
NP_310283.1\|2234499_2234967_-	endopeptidase	Q9EYC9	Enterobacteria_phage	1.2e-78	100.0
NP_310285.1\|2235120_2235690_-	antirepressor protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
NP_310286.1\|2235960_2236494_-	endolysin	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
NP_310287.1\|2236544_2236889_-	hypothetical protein	B6DZ91	Enterobacteria_phage	4.5e-59	100.0
NP_310288.1\|2236893_2237100_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.0e-31	98.5
NP_944542.1\|2237107_2237254_+	hypothetical protein	NA	NA	NA	NA
NP_310289.1\|2237548_2239399_-	hypothetical protein	B6DZ89	Enterobacteria_phage	0.0e+00	98.4
NP_310290.1\|2239447_2239576_-	hypothetical protein	NA	NA	NA	NA
NP_310291.1\|2239720_2239987_-	hypothetical protein	NA	NA	NA	NA
NP_310292.1\|2239877_2240306_-	hypothetical protein	H6WZJ6	Escherichia_phage	4.4e-64	97.8
NP_310294.1\|2240945_2241635_-	antitermination protein	I6PDF8	Cronobacter_phage	4.0e-59	51.1
NP_310295.1\|2241631_2241991_-	crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.9e-38	67.5
NP_310296.1\|2242003_2243053_-	hypothetical protein	U5P0K4	Shigella_phage	1.4e-108	53.7
NP_944589.1\|2243500_2243713_-	hypothetical protein	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
NP_310297.1\|2243757_2243913_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	1.9e-09	83.8
NP_310298.1\|2243901_2244006_-	hypothetical protein	NA	NA	NA	NA
NP_310299.1\|2244121_2244706_-	hypothetical protein	A0A0P0ZD75	Stx2-converting_phage	1.9e-33	84.8
NP_310300.1\|2244762_2245158_-	hypothetical protein	A0A0U2QQN3	Escherichia_phage	7.8e-31	51.4
NP_310301.1\|2245173_2245842_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	1.0e-62	61.2
NP_944543.1\|2245763_2245943_-	hypothetical protein	A0A088CE47	Shigella_phage	5.6e-13	88.9
NP_310302.1\|2245968_2246709_-	replication protein	A0A088CBP4	Shigella_phage	4.6e-125	90.2
NP_310303.2\|2246715_2247678_-	replication protein	U5P0A0	Shigella_phage	4.8e-82	57.3
NP_310304.1\|2247700_2248126_-	hypothetical protein	NA	NA	NA	NA
NP_310305.1\|2248122_2248425_-	hypothetical protein	K7PHA1	Enterobacteria_phage	8.6e-06	34.8
NP_310306.1\|2248459_2248894_+	hypothetical protein	NA	NA	NA	NA
NP_310307.1\|2248878_2249106_+	hypothetical protein	NA	NA	NA	NA
NP_310308.1\|2249107_2249386_+	hypothetical protein	NA	NA	NA	NA
NP_310309.1\|2249590_2249755_+	hypothetical protein	NA	NA	NA	NA
NP_310310.1\|2249681_2250038_+	hypothetical protein	NA	NA	NA	NA
NP_944544.1\|2250109_2250328_+	hypothetical protein	NA	NA	NA	NA
NP_310311.1\|2250896_2251085_+	inhibitor of cell division	NA	NA	NA	NA
NP_310312.1\|2251081_2251273_+	hypothetical protein	NA	NA	NA	NA
NP_310313.1\|2251365_2253837_+	hypothetical protein	K7PLW7	Enterobacteria_phage	3.2e-58	60.1

DBSCAN-SWA_8

2561991 : 2612026

Enterobacteria_phage(62.07%)

integrase,tRNA,transposase,tail

attL 2555215:2555230|attR 2613189:2613204

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2555215:2555230	attL	NA	NA	NA	NA
NP_310613.1\|2561991_2563725_+\|tRNA	arginyl-tRNA synthetase	A0A2K9L6Z2	Tupanvirus	4.0e-87	33.7
NP_310614.1\|2563901_2564390_+	hypothetical protein	NA	NA	NA	NA
NP_310615.1\|2564509_2564902_-	flagellar protein	NA	NA	NA	NA
NP_310616.1\|2564901_2566980_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
NP_310617.1\|2566972_2568121_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
NP_310618.1\|2568322_2568967_-	chemotaxis protein CheZ	NA	NA	NA	NA
NP_310619.1\|2568977_2569367_-	chemotaxis regulatory protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
NP_310620.1\|2569381_2570431_-	chemotaxis-specific methylesterase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
NP_310621.1\|2570433_2571294_-	chemotaxis methyltransferase CheR	NA	NA	NA	NA
NP_310622.1\|2571312_2572914_-	methyl-accepting protein IV	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-14	29.8
NP_310623.1\|2572959_2574621_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	5.8e-11	38.4
NP_310624.1\|2574763_2575267_-	purine-binding chemotaxis protein	NA	NA	NA	NA
NP_310625.1\|2575287_2577252_-	chemotaxis protein CheA	NA	NA	NA	NA
NP_310626.1\|2577256_2578183_-	flagellar motor protein MotB	NA	NA	NA	NA
NP_310627.1\|2578179_2579067_-	flagellar motor protein MotA	NA	NA	NA	NA
NP_310628.1\|2579193_2579772_-	transcriptional activator FlhC	NA	NA	NA	NA
NP_310629.2\|2579774_2580125_-	transcriptional activator FlhD	NA	NA	NA	NA
NP_310630.1\|2580904_2581333_+	universal stress protein UspC	NA	NA	NA	NA
NP_310631.1\|2581339_2582764_-	trehalose-6-phosphate synthase	NA	NA	NA	NA
NP_310632.1\|2582738_2583539_-	trehalose-6-phosphate phosphatase	NA	NA	NA	NA
NP_310635.1\|2584706_2586221_-	L-arabinose transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-13	27.1
NP_310636.1\|2586290_2587280_-	L-arabinose-binding periplasmic protein	NA	NA	NA	NA
NP_310637.1\|2588076_2588580_+	ferritin	NA	NA	NA	NA
NP_944547.1\|2588659_2588911_-	hypothetical protein	NA	NA	NA	NA
NP_310639.1\|2589373_2589697_+	hypothetical protein	NA	NA	NA	NA
NP_310640.1\|2589867_2590365_+	ferritin	NA	NA	NA	NA
NP_310641.1\|2590401_2590641_-	hypothetical protein	NA	NA	NA	NA
NP_310642.1\|2590832_2592044_+	tyrosine-specific transporter	NA	NA	NA	NA
NP_310643.1\|2592105_2592771_-	hypothetical protein	NA	NA	NA	NA
NP_310644.1\|2593127_2594129_-\|integrase	integrase	Q94N03	Haemophilus_virus	4.2e-105	58.5
NP_310645.1\|2594134_2594482_-	hypothetical protein	NA	NA	NA	NA
NP_310646.1\|2594511_2595162_-	hypothetical protein	NA	NA	NA	NA
NP_310647.1\|2595177_2595582_-	transcriptional regulator	Q6QID2	Burkholderia_phage	2.7e-23	53.8
NP_944548.1\|2595657_2595864_+	hypothetical protein	NA	NA	NA	NA
NP_310649.1\|2595880_2596084_+	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
NP_310650.1\|2596105_2596456_+	hypothetical protein	A0A0A7NV42	Enterobacteria_phage	8.6e-50	81.9
NP_310651.1\|2596466_2596745_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	4.8e-35	80.4
NP_310652.1\|2596756_2596999_+	hypothetical protein	A0A0A7NQ71	Enterobacteria_phage	1.2e-37	98.8
NP_310653.1\|2597201_2597618_+	hypothetical protein	NA	NA	NA	NA
NP_310654.1\|2597641_2597845_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
NP_310655.1\|2597841_2598108_+	hypothetical protein	A0A0A7NV47	Enterobacteria_phage	3.1e-31	77.3
NP_310656.1\|2598104_2598404_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	1.6e-41	89.9
NP_310658.1\|2598726_2598957_+	derepression protein	A0A0A7NV48	Enterobacteria_phage	5.9e-31	94.7
NP_310659.1\|2599029_2599395_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	6.6e-61	96.7
NP_310660.1\|2599539_2602224_+	phage replication protein	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	97.7
NP_310661.1\|2602300_2603260_+	plasmid partition protein	A0A0A7NPX4	Enterobacteria_phage	7.9e-178	98.7
NP_310662.1\|2603264_2603579_+	plasmid partition protein	A0A0A7NPT5	Enterobacteria_phage	1.1e-19	52.9
NP_310663.1\|2603598_2604288_-\|transposase	transposase	H6WZH1	Escherichia_phage	1.3e-126	99.6
NP_310664.1\|2604287_2604614_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	1.8e-54	97.2
NP_310665.1\|2605244_2605721_-	hypothetical protein	A0A1L2JYI5	Streptococcus_phage	8.5e-08	34.4
NP_310666.2\|2605973_2606468_-\|tail	tail protein	A0A0A7NV65	Enterobacteria_phage	1.2e-86	100.0
NP_310669.1\|2609264_2609501_-\|tail	phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.9e-22	98.0
NP_310670.1\|2609428_2609794_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.7e-56	98.3
NP_310671.1\|2609848_2610361_-\|tail	tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.1e-92	99.4
NP_310672.1\|2610360_2611545_-\|tail	tail sheath protein	A0A0A7NV69	Enterobacteria_phage	1.7e-219	96.7
NP_310673.1\|2611702_2612026_+\|tail	tail protein	A0A0A7NQ97	Enterobacteria_phage	2.1e-42	97.8
2613189:2613204	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2650868 : 2663362

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_310721.1\|2650868_2652563_-	hypothetical protein	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
NP_310722.1\|2652733_2652916_-	hypothetical protein	NA	NA	NA	NA
NP_310723.1\|2652994_2653912_-	hypothetical protein	NA	NA	NA	NA
NP_310724.1\|2654084_2655005_+	hypothetical protein	NA	NA	NA	NA
NP_310725.1\|2654993_2655464_-	DNA mismatch endonuclease	E5E3X5	Burkholderia_phage	2.0e-33	47.6
NP_310726.1\|2655444_2656863_-	DNA cytosine methylase	E5E3X6	Burkholderia_phage	3.0e-101	54.8
NP_310727.1\|2656929_2657625_-	hypothetical protein	A0A1D6Y7U0	Golden_Marseillevirus	3.6e-07	28.0
NP_310728.1\|2657720_2658047_-	hypothetical protein	NA	NA	NA	NA
NP_310729.1\|2658595_2659240_+	outer membrane protein	Q1MVN1	Enterobacteria_phage	5.8e-60	60.6
NP_310730.1\|2659206_2659782_+	hypothetical protein	Q1MVN1	Enterobacteria_phage	3.1e-36	46.1
NP_310731.1\|2659862_2660213_+	hypothetical protein	NA	NA	NA	NA
NP_310732.1\|2660373_2661225_+	chaperone protein HchA	NA	NA	NA	NA
NP_310733.1\|2661332_2662691_-	2-component sensor protein	Q8QKV7	Ectocarpus_siliculosus_virus	8.7e-05	20.0
NP_310734.2\|2662690_2663362_-	transcriptional regulatory protein YedW	W8CYM9	Bacillus_phage	5.4e-32	35.2

DBSCAN-SWA_10

2670960 : 2711983

Enterobacteria_phage(35.71%)

integrase,transposase,tail,terminase,head,portal,holin

attL 2705411:2705425|attR 2717683:2717697

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_310744.1\|2670960_2672274_-\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	4.8e-77	97.0
NP_310745.1\|2672338_2672938_-	outer membrane protein	A0A0P0ZE39	Stx2-converting_phage	1.2e-110	100.0
NP_310748.1\|2676724_2677402_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.0e-120	100.0
NP_310749.1\|2677299_2677869_-\|tail	tail assembly protein	Q9EYE4	Enterobacteria_phage	1.6e-114	100.0
NP_310750.1\|2678053_2678752_-\|tail	minor tail protein	Q9EYE3	Enterobacteria_phage	1.5e-133	100.0
NP_310751.1\|2678751_2679081_-\|tail	minor tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
NP_310754.1\|2681636_2681942_-\|tail	minor tail protein	S5MDP5	Escherichia_phage	1.9e-21	76.9
NP_310755.1\|2682076_2682508_-\|tail	minor tail protein	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	68.1
NP_310756.2\|2682521_2683184_-	hypothetical protein	Q687F6	Enterobacteria_phage	1.6e-113	97.7
NP_310757.1\|2683243_2683510_-\|head	major head protein	NA	NA	NA	NA
NP_310758.1\|2683567_2683915_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
NP_310759.1\|2683951_2685457_-\|head,tail	head-tail preconnector protein	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
NP_310760.1\|2685446_2687039_-\|portal	portal protein	K7P6U7	Enterobacteria_phage	8.7e-182	60.5
NP_310761.1\|2687035_2687242_-\|head	head completion protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
NP_310762.1\|2687225_2689154_-\|terminase	terminase large subunit	A0A0K2FJ14	Enterobacteria_phage	3.3e-260	65.9
NP_310763.1\|2689125_2689635_-\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
NP_310764.1\|2690335_2690650_-	transcriptional regulator	NA	NA	NA	NA
NP_944549.1\|2690891_2691032_-	hypothetical protein	NA	NA	NA	NA
NP_310765.1\|2691114_2691582_-	endopeptidase	Q7AYI6	Enterobacteria_phage	7.2e-68	88.3
NP_310767.2\|2691733_2691949_-	hypothetical protein	NA	NA	NA	NA
NP_310768.1\|2692071_2692605_-	endolysin	A0A0N7KZF9	Stx2-converting_phage	1.4e-99	97.7
NP_310769.1\|2692655_2693000_-	hypothetical protein	B6DZ91	Enterobacteria_phage	1.7e-58	99.1
NP_310770.1\|2693004_2693211_-\|holin	holin	Q6H9V8	Enterobacteria_phage	2.4e-31	100.0
NP_310771.1\|2693530_2693857_+\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_310772.1\|2693853_2694744_+\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_310773.1\|2694825_2696676_-	hypothetical protein	B6DZ89	Enterobacteria_phage	0.0e+00	96.4
NP_310775.1\|2696989_2697157_-	hypothetical protein	H6WZJ7	Escherichia_phage	5.4e-10	70.6
NP_310776.1\|2697153_2697582_-	hypothetical protein	H6WZJ6	Escherichia_phage	4.9e-63	96.4
NP_310777.1\|2698215_2698905_-	antiterminator	I6PDF8	Cronobacter_phage	1.5e-58	51.1
NP_310778.1\|2698901_2699261_-	crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.5e-36	64.9
NP_310779.1\|2699273_2700323_-	hypothetical protein	U5P0K4	Shigella_phage	1.3e-109	54.9
NP_310780.1\|2700324_2700603_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.3e-11	48.4
NP_310781.1\|2700770_2700983_-	prophage maintenance protein	A0A0U2QV81	Escherichia_phage	7.6e-25	90.0
NP_310782.1\|2701169_2701274_-	hypothetical protein	NA	NA	NA	NA
NP_310783.1\|2701383_2701947_-	hypothetical protein	H6WZG0	Escherichia_phage	4.5e-48	94.9
NP_310784.1\|2702073_2702385_-	hypothetical protein	A0A222YY67	Escherichia_phage	2.4e-51	83.5
NP_310785.1\|2702381_2702570_-	hypothetical protein	A0A291AXE7	Shigella_phage	1.7e-07	45.3
NP_310786.1\|2702566_2702923_-	hypothetical protein	A0A222YY85	Escherichia_phage	3.1e-15	65.8
NP_310787.1\|2702919_2703144_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.6e-09	42.3
NP_310788.1\|2703165_2703864_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	1.6e-71	59.5
NP_310789.1\|2703898_2704561_-	phage replication protein	A0A0U2JGJ0	Escherichia_phage	7.8e-84	96.7
NP_310790.1\|2704352_2705390_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.1e-87	68.3
2705411:2705425	attL	NA	NA	NA	NA
NP_310791.1\|2705458_2705884_-	hypothetical protein	NA	NA	NA	NA
NP_310792.1\|2705880_2706108_-	cell division control protein	NA	NA	NA	NA
NP_310793.1\|2706202_2706850_+	repressor protein	A0A1P8DTH0	Proteus_phage	2.9e-06	24.9
NP_310794.1\|2707124_2707277_+	hypothetical protein	M4QQ57	Salicola_phage	8.7e-07	53.2
NP_310795.1\|2707757_2707946_+	cell division inhibition protein	NA	NA	NA	NA
NP_310796.1\|2707942_2708131_+	hypothetical protein	NA	NA	NA	NA
NP_310797.1\|2708226_2710425_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	5.5e-41	42.5
NP_310798.1\|2710378_2710699_+	hypothetical protein	K7PLW7	Enterobacteria_phage	1.5e-29	69.0
NP_310799.1\|2710757_2710961_+	hypothetical protein	NA	NA	NA	NA
NP_310800.1\|2710960_2711983_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	2.0e-99	57.4
2717683:2717697	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2870029 : 2946279

Enterobacteria_phage(67.5%)

integrase,transposase,tail,protease,terminase,tRNA,portal,holin

attL 2895905:2895925|attR 2943785:2943805

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_310947.1\|2870029_2872063_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.4e-54	27.6
NP_310952.1\|2879020_2882650_+	regulator	NA	NA	NA	NA
NP_310953.1\|2882711_2883029_+	hypothetical protein	NA	NA	NA	NA
NP_310954.2\|2884269_2885358_+	hypothetical protein	NA	NA	NA	NA
NP_310957.1\|2887640_2888777_+	hypothetical protein	Q9EYF7	Enterobacteria_phage	1.9e-167	100.0
NP_310958.1\|2888773_2891011_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	100.0
NP_310959.1\|2890817_2891708_-\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_310960.1\|2891704_2892031_-\|transposase	transposase	Q9ETV7	Enterobacteria_phage	3.7e-55	100.0
NP_310961.2\|2892214_2892676_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
NP_310962.1\|2892717_2893188_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
NP_310963.2\|2893234_2893954_-	two-component response-regulatory protein YehT	NA	NA	NA	NA
NP_310964.1\|2893950_2895636_-	2-component sensor protein	Q9EYF3	Enterobacteria_phage	1.7e-305	100.0
2895905:2895925	attL	NA	NA	NA	NA
NP_310966.1\|2896150_2896399_+	hypothetical protein	Q687E4	Enterobacteria_phage	9.1e-38	97.6
NP_310967.1\|2896766_2897075_-	hypothetical protein	Q9EYE9	Enterobacteria_phage	4.3e-53	100.0
NP_310968.1\|2897037_2898351_-\|tail	tail fiber protein	Q9EYE8	Enterobacteria_phage	8.8e-79	100.0
NP_310969.1\|2898415_2899015_-	outer membrane protein Lom	Q9EV15	Enterobacteria_phage	2.6e-110	100.0
NP_310972.1\|2902795_2903473_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.0e-120	100.0
NP_310973.1\|2903370_2904114_-\|tail	tail assembly protein	Q9EYE4	Enterobacteria_phage	3.7e-151	100.0
NP_310974.1\|2904124_2904823_-\|tail	minor tail protein	Q9EYE3	Enterobacteria_phage	1.5e-133	100.0
NP_310975.1\|2904822_2905152_-\|tail	minor tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
NP_310976.1\|2905148_2907794_-\|tail	tail length tape measure protein	Q9EYE1	Enterobacteria_phage	0.0e+00	100.0
NP_310977.1\|2907837_2908146_-\|tail	minor tail protein	Q687F4	Enterobacteria_phage	1.3e-54	100.0
NP_310978.1\|2908172_2908595_-\|tail	minor tail protein	Q687F5	Enterobacteria_phage	5.1e-73	100.0
NP_310979.1\|2908608_2909361_-	hypothetical protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
NP_310980.1\|2909368_2909767_-\|tail	minor tail protein U	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
NP_310981.1\|2909779_2910403_-\|tail	minor tail protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
NP_310982.1\|2910405_2910687_-	hypothetical protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
NP_310983.1\|2910679_2911006_-	hypothetical protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
NP_310984.1\|2911093_2912110_-	hypothetical protein	Q8VNN5	Enterobacteria_phage	1.1e-190	100.0
NP_310985.1\|2912255_2912582_+\|transposase	transposase	Q9ETV7	Enterobacteria_phage	3.7e-55	100.0
NP_310986.1\|2912578_2913469_+\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_310987.1\|2913471_2914578_-\|protease	protease/scaffold protein	Q8VNN5	Enterobacteria_phage	9.1e-178	92.4
NP_310988.1\|2914375_2915878_-\|portal	portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
NP_310989.1\|2915877_2916114_-	hypothetical protein	S5MBY8	Escherichia_phage	1.7e-33	98.7
NP_310990.1\|2916086_2918210_-\|terminase	terminase large subunit	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
NP_310991.1\|2918206_2918683_-	hypothetical protein	Q9EYD0	Enterobacteria_phage	2.1e-83	100.0
NP_944551.1\|2918739_2918988_+	hypothetical protein	NA	NA	NA	NA
NP_310992.1\|2919137_2919605_-	endopeptidase	Q9EYC9	Enterobacteria_phage	1.2e-78	100.0
NP_310994.1\|2919758_2920328_-	antirepressor protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
NP_310995.1\|2920598_2921132_-	endolysin	A0A1I9LJR4	Stx_converting_phage	1.8e-102	100.0
NP_310996.1\|2921136_2921352_-\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
NP_310997.1\|2921429_2921675_-	hypothetical protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
NP_310998.1\|2921715_2921895_-	hypothetical protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
NP_310999.1\|2922032_2923979_-	hypothetical protein	Q9EYC8	Enterobacteria_phage	0.0e+00	100.0
NP_311000.1\|2924489_2924759_-	Shiga toxin I subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
NP_311001.1\|2924768_2925716_-	Shiga toxin I subunit A	Q777W4	Enterobacteria_phage	3.2e-171	100.0
NP_311002.1\|2926222_2926657_-	antitermination protein	Q8VNP1	Enterobacteria_phage	4.3e-83	100.0
NP_311003.1\|2926649_2926844_-	hypothetical protein	G9L694	Escherichia_phage	1.9e-30	100.0
NP_311004.1\|2926840_2927446_-	hypothetical protein	Q9EYC6	Enterobacteria_phage	2.3e-98	100.0
NP_311005.1\|2927438_2927648_-	hypothetical protein	G9L691	Escherichia_phage	3.5e-30	97.1
NP_311006.1\|2927607_2928009_-	hypothetical protein	Q9EYC4	Enterobacteria_phage	1.4e-72	100.0
NP_311007.1\|2928011_2928188_-	protein NinE	A5VW90	Enterobacteria_phage	4.6e-28	100.0
NP_311008.1\|2928184_2928712_-	DNA methylase	Q9EYC2	Enterobacteria_phage	1.6e-100	100.0
NP_311009.1\|2928708_2929155_-	hypothetical protein	A0A1I9LJP8	Stx_converting_phage	2.4e-81	100.0
NP_311010.1\|2929111_2929537_-	hypothetical protein	Q8SC44	Stx2_converting_phage	2.4e-78	100.0
NP_311011.1\|2929706_2929985_-	hypothetical protein	Q9EYB9	Enterobacteria_phage	4.4e-49	100.0
NP_311012.1\|2930055_2930346_-	Ren protein	A0A0P0ZCJ0	Stx2-converting_phage	9.6e-47	100.0
NP_311013.1\|2930342_2931044_-	phage replication protein P	Q9EYB6	Enterobacteria_phage	5.8e-130	100.0
NP_311014.1\|2931040_2931979_-	phage replication protein O	C1JJ53	Enterobacteria_phage	2.8e-172	100.0
NP_311015.1\|2932011_2932308_-	regulatory protein CII	Q9EYB4	Enterobacteria_phage	1.8e-48	100.0
NP_311016.1\|2932422_2932641_-	regulatory protein	K7PKH4	Enterobacteria_phage	1.1e-34	100.0
NP_311017.1\|2932758_2933397_+	prophage repressor CI	K7PH19	Enterobacteria_phage	5.0e-120	100.0
NP_311018.1\|2933519_2933801_+	hypothetical protein	A4KWR2	Enterobacteria_phage	1.1e-44	100.0
NP_311019.1\|2933807_2934359_+	hypothetical protein	A4KWR1	Enterobacteria_phage	4.1e-70	100.0
NP_311021.1\|2934871_2935144_+	regulatory protein	Q9EYB0	Enterobacteria_phage	2.0e-41	100.0
NP_311022.1\|2935160_2935742_-	superinfection exclusion protein	Q9EYA9	Enterobacteria_phage	4.0e-100	100.0
NP_311023.1\|2936002_2936371_+	single-stranded DNA binding protein	A0A1I9LJN3	Stx_converting_phage	7.6e-65	100.0
NP_311024.1\|2936443_2936608_+	regulatory protein cIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
NP_311025.1\|2936450_2936720_+	Kil protein	Q9EYA7	Enterobacteria_phage	1.3e-42	100.0
NP_311028.1\|2937097_2937883_+	hypothetical protein	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
NP_311029.1\|2937879_2938557_+	exonuclease	A0A1I9LJM9	Stx_converting_phage	4.6e-132	100.0
NP_311030.1\|2938550_2938739_+	hypothetical protein	G3CFH8	Escherichia_phage	1.2e-29	100.0
NP_311031.1\|2938711_2938903_+	hypothetical protein	A0A1I9LJM8	Stx_converting_phage	1.9e-27	100.0
NP_311032.1\|2938913_2939195_+	hypothetical protein	A0A0P0ZBQ0	Stx2-converting_phage	1.9e-47	100.0
NP_311033.1\|2939293_2939515_+	C4-type zinc finger protein	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
NP_311034.1\|2939511_2940459_+	hypothetical protein	A0A0P0ZE96	Stx2-converting_phage	3.6e-183	100.0
NP_944552.1\|2940686_2940974_+	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	9.5e-55	100.0
NP_311036.1\|2940970_2941327_+	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	3.1e-63	100.0
NP_311037.1\|2941323_2941686_+	hypothetical protein	Q9EY98	Enterobacteria_phage	1.8e-71	100.0
NP_311038.1\|2941773_2942016_+	hypothetical protein	B6DZ51	Enterobacteria_phage	1.5e-37	100.0
NP_944553.1\|2942019_2942154_+	hypothetical protein	A0A0P0ZDP5	Stx2-converting_phage	4.9e-22	100.0
NP_311039.1\|2942172_2942427_+	excisionase	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
NP_311040.1\|2942460_2943747_+\|integrase	integrase	Q9EY96	Enterobacteria_phage	7.6e-253	100.0
NP_311041.1\|2943821_2944469_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	5.6e-95	99.4
2943785:2943805	attR	NA	NA	NA	NA
NP_311042.1\|2944616_2945348_-	transport system permease	NA	NA	NA	NA
NP_311043.1\|2945352_2946279_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.8e-23	30.8

DBSCAN-SWA_12

3191899 : 3197043

Enterobacteria_phage(50.0%)

integrase

attL 3182350:3182366|attR 3194314:3194330

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3182350:3182366	attL	NA	NA	NA	NA
NP_311257.1\|3191899_3192832_+	transport	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
NP_311258.1\|3193143_3194301_+\|integrase	prophage Sf6-like integrase	E7DYQ6	Enterobacteria_phage	2.2e-222	100.0
NP_311259.1\|3194475_3195612_-	acyltransferase	Q716G3	Shigella_phage	1.4e-80	72.8
3194314:3194330	attR	NA	NA	NA	NA
NP_311260.1\|3195621_3196302_-	DNA transfer protein	G5DA80	Enterobacteria_phage	1.8e-59	71.0
NP_311261.1\|3196288_3196756_-	hypothetical protein	Q2A0B3	Sodalis_phage	1.7e-64	74.7
NP_311262.1\|3196755_3197043_-	hypothetical protein	Q716G6	Shigella_phage	7.6e-44	98.9

DBSCAN-SWA_13

3474904 : 3489655

Enterobacteria_phage(31.25%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_311509.1\|3474904_3475387_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
NP_311510.1\|3476232_3476481_+	DNA damage-inducible protein	A5LH55	Enterobacteria_phage	3.1e-38	98.8
NP_311512.1\|3476982_3477573_-	chaperone-like protein	NA	NA	NA	NA
NP_311513.1\|3477755_3478406_+	hypothetical protein	B6DZZ5	Stx2-converting_phage	2.8e-25	37.2
NP_311514.1\|3478484_3479543_+	hypothetical protein	NA	NA	NA	NA
NP_311515.1\|3479672_3480095_-	hypothetical protein	B6DZB9	Enterobacteria_phage	5.7e-72	97.0
NP_311516.1\|3480255_3480645_-	hypothetical protein	Q6H9S8	Enterobacteria_phage	5.1e-67	96.1
NP_311517.1\|3480742_3481069_+\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_311518.1\|3481065_3481956_+\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_311519.1\|3481762_3482260_-	hypothetical protein	A0A0N7C1Y0	Escherichia_phage	2.0e-44	97.5
NP_311520.1\|3482456_3482804_-	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
NP_311521.1\|3482800_3483181_-	hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
NP_311523.1\|3483537_3483882_-	hypothetical protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
NP_311524.1\|3483886_3484102_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
NP_311525.1\|3484251_3486105_-	hypothetical protein	H6WZJ9	Escherichia_phage	0.0e+00	97.7
NP_311526.1\|3486345_3486675_+	hypothetical protein	NA	NA	NA	NA
NP_311527.2\|3486765_3487482_-	hypothetical protein	NA	NA	NA	NA
NP_311528.1\|3487761_3488385_-	antitermination protein	K7PM87	Enterobacteria_phage	2.2e-112	98.1
NP_311529.1\|3488381_3489047_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
NP_311530.1\|3489043_3489655_-	hypothetical protein	A0A1U9AJF8	Stx1_converting_phage	2.5e-92	95.6

DBSCAN-SWA_14

3869374 : 3875566

Stx2-converting_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_311889.1\|3869374_3870265_-\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
NP_311890.1\|3870261_3870588_-\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
NP_311891.1\|3870593_3870710_-	hypothetical protein	NA	NA	NA	NA
NP_311892.1\|3870778_3871126_+	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	3.1e-60	99.1
NP_311893.1\|3871322_3872714_+	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	6.5e-274	100.0
NP_311895.1\|3872936_3873287_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.8e-39	65.5
NP_311896.1\|3873499_3874903_+	hypothetical protein	A0A0P0ZEB3	Stx2-converting_phage	5.0e-173	65.1
NP_311898.1\|3875221_3875566_+	hypothetical protein	Q716C1	Shigella_phage	1.7e-18	54.7

DBSCAN-SWA_15

5041092 : 5079469

Shigella_phage(55.0%)

transposase,tail,protease,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
NP_312970.1\|5041092_5041623_-	regulatory protein	A0A2D1GNR8	Pseudomonas_phage	3.7e-36	62.4
NP_312971.1\|5041813_5042062_+	DNA-binding protein	A0A2D1GNH1	Pseudomonas_phage	1.3e-28	73.2
NP_312972.1\|5042063_5044154_+\|transposase	phage transposase	A0A2D1GNK9	Pseudomonas_phage	8.8e-166	45.4
NP_312973.1\|5044224_5045157_+	DNA transposition protein	A0A0C4UQR3	Shigella_phage	1.2e-69	48.3
NP_312974.1\|5045159_5045381_+	hypothetical protein	NA	NA	NA	NA
NP_312975.1\|5045393_5045648_+	hypothetical protein	NA	NA	NA	NA
NP_312976.1\|5045649_5045931_+	hypothetical protein	I6WB15	Burkholderia_virus	2.8e-11	47.4
NP_312977.1\|5045927_5046200_+	hypothetical protein	NA	NA	NA	NA
NP_312978.1\|5046204_5046498_+	hypothetical protein	NA	NA	NA	NA
NP_312979.1\|5046509_5047040_+	host-nuclease inhibitor protein	C9DGL8	Escherichia_phage	1.9e-48	57.1
NP_312980.1\|5047137_5047680_+	hypothetical protein	A0A0C4UQZ6	Shigella_phage	4.9e-28	40.0
NP_312981.1\|5047683_5048217_+	hypothetical protein	A0A0C4UQU2	Shigella_phage	2.8e-68	67.8
NP_312982.1\|5048216_5048732_+	hypothetical protein	C9DGM0	Escherichia_phage	5.5e-45	53.6
NP_312983.1\|5048996_5049287_+	hypothetical protein	NA	NA	NA	NA
NP_944579.1\|5049283_5049469_+	hypothetical protein	NA	NA	NA	NA
NP_312984.1\|5049465_5049840_+	hypothetical protein	NA	NA	NA	NA
NP_312985.1\|5049832_5050030_+	hypothetical protein	A0A291AXE7	Shigella_phage	1.2e-05	34.5
NP_312986.1\|5050019_5050316_+	hypothetical protein	NA	NA	NA	NA
NP_312987.1\|5050312_5050822_+	hypothetical protein	A0A0C4UQU3	Shigella_phage	6.7e-27	42.4
NP_312988.1\|5050891_5051317_+	transcriptional regulator	NA	NA	NA	NA
NP_312989.1\|5051388_5051889_+	endolysin	B6SD29	Bacteriophage	3.0e-27	42.6
NP_312991.1\|5052107_5052554_+	hypothetical protein	B6SD19	Bacteriophage	1.2e-11	48.0
NP_312992.1\|5052563_5052791_+	C4-type zinc finger TraR	NA	NA	NA	NA
NP_312993.1\|5052771_5053080_+	hypothetical protein	NA	NA	NA	NA
NP_312994.1\|5053076_5053367_+	hypothetical protein	A0A0C4UR00	Shigella_phage	1.0e-24	62.1
NP_312995.1\|5053369_5053951_+	hypothetical protein	A0A0C4UQU5	Shigella_phage	1.9e-49	57.0
NP_312996.1\|5053950_5055615_+\|portal	portal protein	A0A0C4UR29	Shigella_phage	1.4e-230	73.2
NP_312997.1\|5055677_5057204_+	hypothetical protein	A0A0C4UQR8	Shigella_phage	3.1e-160	58.0
NP_312998.1\|5057187_5058513_+	hypothetical protein	A0A0C4UQY9	Shigella_phage	6.4e-154	59.7
NP_312999.1\|5058631_5059105_+	virion morphogenesis protein	A0A0C4UR01	Shigella_phage	5.1e-37	53.9
NP_313000.1\|5059281_5060406_+\|protease	protease	A0A0C4UQU6	Shigella_phage	2.2e-78	47.6
NP_313001.1\|5060405_5061353_+\|head	major head subunit	A0A0C4UQR9	Shigella_phage	1.2e-122	67.2
NP_313002.1\|5061396_5061783_+	hypothetical protein	NA	NA	NA	NA
NP_313003.1\|5061779_5062199_+	hypothetical protein	A0A0C4UR02	Shigella_phage	4.7e-34	53.6
NP_313004.1\|5062195_5062756_+	hypothetical protein	A0A0C4UQU7	Shigella_phage	1.1e-41	47.7
NP_313005.1\|5062756_5063002_+	hypothetical protein	C9DGP6	Escherichia_phage	2.8e-07	54.5
NP_313006.1\|5062998_5064501_+\|tail	tail sheath protein	C9DGP7	Escherichia_phage	5.6e-138	51.3
NP_313007.1\|5064509_5064875_+	hypothetical protein	C9DGP8	Escherichia_phage	2.0e-25	51.7
NP_313008.1\|5064889_5065366_+	hypothetical protein	A0A0C4UR03	Shigella_phage	1.0e-21	50.8
NP_313009.1\|5065492_5067568_+	tape measure protein	A0A0C4UQU8	Shigella_phage	2.1e-71	37.7
NP_313010.1\|5067533_5068904_+	DNA circulation protein	C9DGQ2	Escherichia_phage	1.0e-53	33.1
NP_313011.1\|5068887_5070012_+\|tail	tail protein	C9DGQ3	Escherichia_phage	2.9e-91	48.5
NP_313012.1\|5070001_5070616_+	hypothetical protein	A0A0C4UQZ3	Shigella_phage	8.0e-51	50.8
NP_313013.1\|5070608_5071046_+	hypothetical protein	A0A0C4UR04	Shigella_phage	1.9e-38	53.5
NP_313014.1\|5071042_5072128_+	hypothetical protein	A0A0C4UQU9	Shigella_phage	1.1e-98	53.2
NP_313015.1\|5072118_5072679_+	hypothetical protein	C9DGQ7	Escherichia_phage	2.3e-44	48.1
NP_313016.1\|5072678_5073590_+\|tail	tail fiber	C9DGQ8	Escherichia_phage	2.9e-36	47.5
NP_313017.1\|5073624_5074146_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	2.1e-47	52.6
NP_313018.1\|5074225_5074429_-\|tail	tail fiber protein	NA	NA	NA	NA
NP_313019.1\|5074650_5075211_+	DNA-invertase	A0A0C4UR34	Shigella_phage	4.3e-75	75.7
NP_313020.1\|5075310_5077350_+	hypothetical protein	S5MDQ7	Escherichia_phage	4.3e-274	79.4
NP_313021.1\|5077496_5077679_+	hypothetical protein	S5MBZ5	Escherichia_phage	1.3e-09	54.4
NP_313022.1\|5077714_5077960_+	hypothetical protein	NA	NA	NA	NA
NP_313023.1\|5077998_5078310_-	hypothetical protein	NA	NA	NA	NA
NP_313024.1\|5078577_5078778_+	translational regulator	NA	NA	NA	NA
NP_944580.1\|5078680_5078917_-	hypothetical protein	NA	NA	NA	NA
NP_313025.1\|5078731_5079469_+	DNA modification protein	A0A0C4UQZ7	Shigella_phage	1.7e-103	79.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_002128

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_002695

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection