CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_003295	Ralstonia solanacearum GMI1000, complete genome	1 crisprs	DEDDh,csa3,DinG,PD-DExK,WYL,cas3	0	1	10	0
NC_003296	Ralstonia solanacearum GMI1000, complete genome	1 crisprs	csa3	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_003295_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003295_1

1445581-1445691

Orphan

Consensus_repeat	Method
TCCCTATGTTCGTCCCGAGCCGTCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003295_1

>merge|NC_003295|1|1445581-1445691|CRISPRCasFinder
TCCCTATGTTCGTCCCGAGCCGTCCGCGCCTCCGCTGCCGGAGCAGGGCGCCCCGTCCGGGCGCGCCGCCAACAGCGCTTCCCATCCCTATATTCGTCCCGAGCCGTCCGC

>NC_003295|1|1|1445581-1445691|CRISPRCasFinder
TCCCTATGTTCGTCCCGAGCCGTCCGC	GCCTCCGCTGCCGGAGCAGGGCGCCCCGTCCGGGCGCGCCGCCAACAGCGCTTCCCA
TCCCTATATTCGTCCCGAGCCGTCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003295.1\|WP_043876582.1\|1435727_1437785_+\|NEL-domain-containing-protein	unknown	unknown	gnl\|CDD\|339245
NC_003295.1\|WP_011001303.1\|1442193_1442700_+\|ribonuclease-E-activity-regulator-RraA	unknown	unknown	gnl\|CDD\|236487
NC_003295.1\|WP_011001309.1\|1449938_1450868_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_003295.1\|WP_011001297.1\|1434595_1435579_+\|CysB-family-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237172
NC_003295.1\|WP_011001301.1\|1439523_1440336_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_003295.1\|WP_011001316.1\|1456301_1457033_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_003295.1\|WP_011001314.1\|1454364_1455828_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NC_003295.1\|WP_011001304.1\|1442692_1443106_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|225016
NC_003295.1\|WP_011001313.1\|1453797_1454268_+\|DUF1857-family-protein	unknown	unknown	gnl\|CDD\|176872
NC_003295.1\|WP_011001300.1\|1438275_1439520_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NC_003295.1\|WP_020371745.1\|1449427_1449862_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_003295.1\|WP_011001296.1\|1433442_1434561_+\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
NC_003295.1\|WP_043876731.1\|1452110_1453691_+\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NC_003295.1\|WP_028853004.1\|1455879_1456149_-\|acyl-CoA-binding-protein	unknown	unknown	gnl\|CDD\|226731
NC_003295.1\|WP_011001302.1\|1440420_1442166_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|181285
NC_003295.1\|WP_043876583.1\|1447991_1449296_+\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NC_003295.1\|WP_011001299.1\|1437982_1438276_+\|2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|379083
NC_003295.1\|WP_011001311.1\|1451324_1452026_+\|haloacid-dehalogenase-type-II	unknown	unknown	gnl\|CDD\|130495
NC_003295.1\|WP_011001310.1\|1450892_1451114_-\|hypothetical-protein	unknown	unknown	unknown
NC_003295.1\|WP_011001305.1\|1443283_1445146_+\|GALA-protein	unknown	unknown	gnl\|CDD\|275380

Protein	Function_ID	Function_description	E-value
NC_003295.1\|WP_043876582.1\|1435727_1437785_+\|NEL-domain-containing-protein	gnl\|CDD\|339245	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting. This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus of the family-members there is a series of LRR repeats, and the NEL domain interacts with the most N-terminal repeat. The key residue for the ligation step is the cysteine, eg found at position 386 in UniProtKB:E7K2H2. The LRR section sequesters this active site until invasion has occurred.	3.89932e-52
NC_003295.1\|WP_011001303.1\|1442193_1442700_+\|ribonuclease-E-activity-regulator-RraA	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	1.43722e-96
NC_003295.1\|WP_011001309.1\|1449938_1450868_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.22847e-92
NC_003295.1\|WP_011001297.1\|1434595_1435579_+\|CysB-family-HTH-type-transcriptional-regulator	gnl\|CDD\|237172	PRK12683, PRK12683, transcriptional regulator CysB-like protein; Reviewed.	0
NC_003295.1\|WP_011001301.1\|1439523_1440336_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	6.05813e-65
NC_003295.1\|WP_011001316.1\|1456301_1457033_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	3.2287e-55
NC_003295.1\|WP_011001314.1\|1454364_1455828_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.46633e-68
NC_003295.1\|WP_011001304.1\|1442692_1443106_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|225016	COG2105, COG2105, Uncharacterized conserved protein [Function unknown].	7.16915e-29
NC_003295.1\|WP_011001313.1\|1453797_1454268_+\|DUF1857-family-protein	gnl\|CDD\|176872	cd08863, SRPBCC_DUF1857, DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.21381e-54
NC_003295.1\|WP_011001300.1\|1438275_1439520_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	3.4073e-90
NC_003295.1\|WP_020371745.1\|1449427_1449862_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	5.66819e-31
NC_003295.1\|WP_011001296.1\|1433442_1434561_+\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.25082e-167
NC_003295.1\|WP_043876731.1\|1452110_1453691_+\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NC_003295.1\|WP_028853004.1\|1455879_1456149_-\|acyl-CoA-binding-protein	gnl\|CDD\|226731	COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism].	2.7436e-46
NC_003295.1\|WP_011001302.1\|1440420_1442166_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|181285	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.	0
NC_003295.1\|WP_043876583.1\|1447991_1449296_+\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NC_003295.1\|WP_011001299.1\|1437982_1438276_+\|2TM-domain-containing-protein	gnl\|CDD\|379083	pfam13239, 2TM, 2TM domain. This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.	7.78691e-15
NC_003295.1\|WP_011001311.1\|1451324_1452026_+\|haloacid-dehalogenase-type-II	gnl\|CDD\|130495	TIGR01428, Haloacetate_dehalogenase, 2-haloalkanoic acid dehalogenase, type II. Catalyzes the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids. Belongs to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.	1.61219e-91
NC_003295.1\|WP_011001305.1\|1443283_1445146_+\|GALA-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	1.97624e-33

>NC_003295.1|WP_011001305.1|1443283_1445146_+|GALA-protein
MVSRIPTGNRGQGNGIEQSASSHATEATPWLGVNLPYGHWLPSSARSVVSRASSLLGGLANFRWGGRPASARPAPNIRSAAIAPAQQTLPPELWQQIATLAGARPRRAMREVSLELRNASRAVVTHLTISDPAMFRQLSLYPALKSVRFKGELTLEALKALPPELEHLEIGRCTGSAISAEGLAHLASMPLKSLNLNGIEIGVEGARTLAASKSLVSLSLIGCGIGDRAAQALVASRSIQCLDLSVNRIGRDGAQALAGAPLVSLNLHNNEIGNEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSYNPIGFWGVNALGRAKLRKLDLCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEANTRITGTPQNPNFLAEDVPRPDVRWRD
>NC_003295.1|WP_011001304.1|1442692_1443106_+|gamma-glutamylcyclotransferase
MTEAIHVFAYGTLRAGEANDLRVAASRRGIAEPKLIGHATLHGRLYDFGAYPGLVPDPTGTAVRGDVYRIDPGLVPVLDTIEAVYPGGGALFLRETHTVMLGSEPLDCIVYPVSAGQVAGRHVITGGDWVAYRLARG
>NC_003295.1|WP_011001303.1|1442193_1442700_+|ribonuclease-E-activity-regulator-RraA
MTTMMIPVTDLCDAHEDQLASGAVRVLAPVFRSFGARAAFAGPAATLKVFEDNGLVRAMLEQPGEGRVLVVDGGGSLRCALVGGNLAKLAEDNGWEGVLVNGCVRDTRELAACNVGVHALAAHPRKSFKKNQGERDIGVQMPGAYIHPGEWIYGDEDGVLVSRERLHD
>NC_003295.1|WP_011001302.1|1440420_1442166_+|thiamine-pyrophosphate-binding-protein
METAVARPVSTGPTDSTDSGSRPVPRHGGQILVDALIAHGTDLAFGVPGESYLAVLEGFYQRRDRARFIVCRQEGGAATMADAHGKLTGRPGIVFCTRGPGATNASIGVHTAFQDSTPLILFIGQVGRDCVDREAFQEIDYRRMFGQMAKWVAQIDSVERIPEYIARAFQTATAGRPGPVVLALPEDMLTQVATVADVPPMPRAMAWPAPHDLARLKALLGRAERPLLLLGGAGWTPQAAARLQAFAERWRLPVGCVFRRQDLFDNRHPNYAGDVGIAINPKLAARVREADVVLAIGTRLGEMATSGYTLFDVPRPRQTLIHVHAGAEELGRVYQADLMIHAAMPAIGEALDGVAPDAPPRWQAWTEAAHADYLANIAPPPFAGRGIDLARAMQWLRERLPRNAILTNGAGNYATWLHRFYQYGPLAAGSRTQLAPTSGAMGYGAPAAVAAKIACPQTPVICLAGDGCFLMNGQELATAMQYDAPVIFIVVNNGMYGTIRMHQERAYPEHVSGTELRNPDFAALARAYGAEGHTVRSLEGFQAAVEAALAVPVATVIEVQTDPEIISPRATLQSLRAQARG
>NC_003295.1|WP_011001301.1|1439523_1440336_+|response-regulator-transcription-factor
MPIAPRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVFLDIRMPGLSGIEVARELAGRAQRPLVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAATVRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGANGAYLRFIKALVGQEIRFIPVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAVHLSLGRLALKIRGRTETLPVARQYAHLFRQM
>NC_003295.1|WP_011001300.1|1438275_1439520_+|sensor-histidine-kinase
MRDRPRFDPATPSSKIGRMLANVSLPPLAECLRIAMRGLRAFAWIVAINTGIAAVLAFGIKPDDTFWHDLVYSQAIGLSMWLLIDIPRHLLWGNGPPSRRVLPWIVVAAVLIGVPFGQWVARRILCTGDQPWRADSLRMSFIIAMLAALGATYFYWSRGKLATLQRQAALDALEREEAEKQVVRAQLMALQAQIEPHFLFNALAHVDVLIARDPAGARRLLQHLIGFLRTSLAHARAEQCTLAQEFALLRAYLDIQALRFGARLRFSLALDDAIAGLVVPPMLIQPLVENAVVHGIEPSREGGTIALSARREGDRLRLEVRDTGIGFGRDAAPGKGSGMGLTHVRERLARLFDADARLTIAETMPHGVTVTVELPLAHDAAGADASGAAVPQWRCRFSRPAVAPALAPRAPAGT
>NC_003295.1|WP_011001299.1|1437982_1438276_+|2TM-domain-containing-protein
MSATTFPASDDAALLHRARRRAGARMGLRIHLLAFLAVNLMLAAIALSRGQSWFIWPLLGWGVGLAAHGLGLAWALGSGYRRLVDRELARLRNQAGR
>NC_003295.1|WP_043876582.1|1435727_1437785_+|NEL-domain-containing-protein
MPTRVPSPTLGRSHPVTGAASTATSTAATATRSGPATAPASGRSREGLLAELPTGRTARTPSVSAAGAHAGRPAWNVQGAIEAMAALSPEREKRLFKKSASPQYRYAKGLTAEQRGQLESALEQRFRNPAAPAEARDSALAMWLSVQQARLRTHTAGHRNHHNLEQFQLAALSVPIPLLALGYRRQRRRYYSSPLRPEYRTAFNNFMRVIGDPSLSEAVRQTVAQRLEYHRRSEETIARHERQLLGEHGVMGLAESGYQIGTNYDHVNLTALEREAVVESRGSGVPPALHIQALQTERSRVESGALRHQWLTRELRDAQARAGQGEAVAASAGPSSVRQVDAAESSAAAARLRRDTANDIRRLRRPLAAEIKQWLKLAHAEPLPDPKAFDNELYANAFARLLERRRPLSLISYFARWDPVVVDGAKVIQAIAKDANLRKEVFAAAETALGTCGDNVADGFANIVTMVDTHQLVDDVRSGKLDQPALEAWGRQRYRLDSLITEVNQWMASRRRQAGQHSIMTERRVAREPLETMLHAKVALKTVLDLPKNLPSSMRHRLASALKPDDLKRLAETVQAKEADPVELARYLLSNDAWRGAMKALHPAAFAALRKRFAPEKDALAKEIPPQPTDPEGLEFLDERMAYAERTDAFTQKCRAAEDTLLLSLAGRYALVPAVVGAGPSQGSR
>NC_003295.1|WP_011001297.1|1434595_1435579_+|CysB-family-HTH-type-transcriptional-regulator
MNFQQLRSIREAVRRQFNLTEVANALYTSQPGVSRQIRELEDELGVEIFERYGKRLTGLTEPGREIVRIVERLLLEAENLRQAGEEFSGRQSGRLTVATTHTQARYALPKVVQAFRKAYPHVTLALQEASPSHIVELLLTGQADIGVATEAVASEPGLTSFEAYRWRHVLVVSPDHPLTKNPLPALEDVAQYPLITYDAGFTGRRNIDAAFAGAGLQPEIVLTAMDADVIKTYVALDVGVGIIASMAYDGRKDDNLVCIGADHLFEPNTTRVAVRRGAYLRGYAHDFIGMFAPHLSREAVAEAVASTVVAQPARPALVASPRQTLAA
>NC_003295.1|WP_011001296.1|1433442_1434561_+|sulfate-ABC-transporter-ATP-binding-protein
MSIQVQHVTKRFGNFVALDDVSLAFRQGELTALLGPSGCGKTTLLRIIAGLEHADAGTILLNGEDASDRHVRERQVGFVFQHYALFKHMTVFENVAFGLRVKPRAQRPSEAQIRAKVKALLELVQLDWLAERYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDDLHVTSLFVTHDQEEALEVADSVVLMNRGQVEQVGSPDAVYNTPATPFVYGFLGNVNLFHGRLEAGEGGSVLHVGETALSVPPGGVDASRADQAVAFVRPHEIDLERYAPGAEGIPVTLRRALTLGAVAQLELERTDSDDIIEVSLPIERFRAQGLREGETLVVRPRAIRVFAQGQGSEHAAAAQAAA
>NC_003295.1|WP_043876583.1|1447991_1449296_+|isocitrate-lyase
MSREPEVKALQQEWDTNPRWKGIKRGYTAQDVVRLRGSLQIEHTLARRGAEKLWTLMNSEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANSNGEMYPDQSLYSVDSVPKVVKRINNTFQRADQIQWSEGKDDVDFFAPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTREAVSKLVAARLAADVMGVPTVLIARTDAEAADLLTADVDDNDRPFCTGERTVEGFYRTKPGLQQAIARGLAYADYADLVWCETGKPDLEYAKKFAEAIHAKFPGKMLAYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGFHALNYSMFNLAHGYARNQMSAFVELQEAEFAAAEKGFTAVKHQREVGTGYFDAVTQTIERDASTTALKGSTEDEQFFEEKAHAKKVA
>NC_003295.1|WP_020371745.1|1449427_1449862_-|universal-stress-protein
MFQHILIPTDGSELSRKAVAGALDFAKTLGARLTAYTCLEEYPYTPFSEIVVETPQAFKERVEAQARVVLKDVEDTARAAGIDCDTDMSCFAVPYMGIIDAAERHGCDVIFMASHGRRGLAGLLLGSETQKVLTHTAIPVIVYR
>NC_003295.1|WP_011001309.1|1449938_1450868_-|LysR-family-transcriptional-regulator
MAHFKQLETFVAVATRGSLSAAAAAEGVAPAIIGRRIDALEERLGVKLLVRTTRRITLTFEGSAFLEDCQRILNDLHNAEASVSAGGVKASGHLRVTAPAGFGRRHVAPMVPDFLAAHPDVSITLDLGDRIVDLVNEGFDCAIRLGDLPDSSLVSIRLWENRRVVVAAPAYLERRGRPEQLEQLAGHNCLAFGASANVQRGWVFQQGGKTVTVKVGGTMECTDGAVLREWCLQGHGLAWRSWWEVGHDIATGRLVTVLDAFEAPPIGIHAVFPQRKHLPLRVRLLIDFLKNTYGNPAYWRRADPTLLTD
>NC_003295.1|WP_011001310.1|1450892_1451114_-|hypothetical-protein
MSLWPQIACVAQRVPAGKIGADGGAAWLAGVAAGALAAWAWLRGRFRLAPAVLEIGVAPWRLRRPSTPAGMPA
>NC_003295.1|WP_011001311.1|1451324_1452026_+|haloacid-dehalogenase-type-II
MTSIRAVVFDAYGTLFDVYSVAARAEQLFPGKGEALSVLWRDRQIDYTRIRSLAGPSGEHYKPFWDVTVDALRYACARLNLPLGNHAEATLMREYACLSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSGLFDHVLSVDAVRLYKTAPAAYALAPRAFGVPAAQILFVSSNGWDACGATWHGFTTFWINRLGHPPEALDVAPAAAGHDMRDLLQFVQARQSMR
>NC_003295.1|WP_043876731.1|1452110_1453691_+|malate-synthase-A
MELTLPQGMEIKAEILPAYEDILTPEALALVARLHRAFEPRRQQRLAERAERVKRLDAGERPDFLPETRHIREGDWTIAPIPPALECRRVEITGPVEAKMVINAFNSGADSYMTDFEDSNAPSWHNQIQGQVNLKAAIRRTLTLESGGKSYKLNDKIATLQVRPRGWHLDEKHVTVDGQRVSGGIFDFALFLFHNAREQLARGAGPFFYLPKMESHLEARLWNDVFIAAQDALGLPRGTIKATVLIETILAAFEMDEILYELREHSAGLNAGRWDYIFSCIKKFKVDQNFCLADRARVTMTSPFMRAYALLLLKTCHKRNAPAMGGMSALIPIKNDPEKNAVAMQGIINDKKRDATDGYDGGWVAHPGLVEAAMKEFVDVLGDAPNQIGKQRPDVNVAAADLLNFQPEQPITEAGLRMNINVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRSQVWQWIRSPKGTLEDGTKVTAELVRKLIPEELAKVKADGAVGHFDRAAQIFEQMSTSESFSEFLTLPLYEEL
>NC_003295.1|WP_011001313.1|1453797_1454268_+|DUF1857-family-protein
MRFEHLVEVNDPLNPLMDALTLNQIWQGLVLRVLEPTEFVEGLDEGIITARGEGWVERELRFGKARIQDRVTLEPHQRVTYTTAATGEHAGGSLTMTIETNEANAAFIRFVYDTTLPSADETGDTRYAEIVKSAYREADIDTVRRIREFAAIGRLG
>NC_003295.1|WP_011001314.1|1454364_1455828_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MATFTPTLETLRARHGERFKWLVLFTLTVGAVSSIISATIVNVAIPDLSRHFVLGQERAQWVSASFMVAMTLAMLLTPWLLLRFGLRRTFIGALLLLGVGGLVGGLSPTYGVMIAMRVVGGVAAGIMQPLPNILILRVFPEREQGKAFGLFGFGVVLAPALGPSLGGFLVELFGWRSIFFVVVPFTLLGWAMARRFMAINSSMAGEPKPLDWRGLLLVGAATVALLNGLVELHADVTRGVALMAVSAVCLAVFLFWQRRVESPLLDLRLFSYRQFAMGAVVAFIYGAGLYGSTYLLPVYMQVALAYTPSSAGLVLLPPGLALAATIVVAGRLTSRIEPYRLVSFGLAALAVSFLLMTTNTRATGYLLLIGIAAIGRVGLGFVLPSLSLGAMRGVDFTLIPQGSSAVNFLRQLGGAIGVSATGIFLQWRLAARGIGAVGGVAVDPEARIVACDETFVFLGVLCALAVAAAWRMRRREPAAVVSAGVGP
>NC_003295.1|WP_028853004.1|1455879_1456149_-|acyl-CoA-binding-protein
MSDLQTRFDQAQTDVKSLSERPSNMTLLRLYALFKQGSEGDAHGDKPGFTDIVGRYKYEAWAGLKGLSQDDARQKYIDLVEELKSGATT
>NC_003295.1|WP_011001316.1|1456301_1457033_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MPWILAFDTSTEFCSVALGDGTRTLFRHEHTGARSSSRVLPAAGELLAEAGIALGDCAAIAFGAGPGSFTGLRTACGVAQGLAFGAGLPVVQVNSLMACAEQTRAALPAGTAVTVALDARMDECYWASFVPVAEDASGWHALSAVQVSAPQAVAPPQQPYWLAGNAAAVFGDRLAAATGAAAVLPDVAPHAREIVTLGLRLLAAGHTVRPEDAAPLYVRDKVALTIEERQAVQQAKAAAGARA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003295_1	1.1\|1445608\|57\|NC_003295\|CRISPRCasFinder	1445608-1445664	57	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1200220-1200276	0	1.0

1. spacer 1.1|1445608|57|NC_003295|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 0, identity: 1.0

gcctccgctgccggagcagggcgccccgtccgggcgcgccgccaacagcgcttccca	CRISPR spacer
gcctccgctgccggagcagggcgccccgtccgggcgcgccgccaacagcgcttccca	Protospacer
*********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

841310 : 899438

Acidithiobacillus_phage(33.33%)

portal,head,tRNA,transposase,terminase,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011000751.1\|841310_843965_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.7
WP_043876555.1\|844254_845361_+	purine nucleoside permease	NA	NA	NA	NA
WP_011000753.1\|845357_846398_+	hypothetical protein	NA	NA	NA	NA
WP_021155847.1\|846635_848744_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_043876556.1\|848770_849481_+	hypothetical protein	NA	NA	NA	NA
WP_011000756.1\|849490_850240_-	slipin family protein	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	3.9e-23	31.6
WP_011000757.1\|850251_851664_-	nodulation protein NfeD	NA	NA	NA	NA
WP_011000758.1\|851738_852647_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_020831465.1\|852755_853976_+	MFS transporter	NA	NA	NA	NA
WP_011000760.1\|854058_854844_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_011000761.1\|854856_855045_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_011000762.1\|855097_856135_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_011000763.1\|856153_856735_+	NUDIX hydrolase	NA	NA	NA	NA
WP_003263554.1\|856774_857002_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_011000764.1\|857015_857387_-	cytochrome c	NA	NA	NA	NA
WP_011000767.1\|858718_859351_-	LysE family translocator	NA	NA	NA	NA
WP_011000768.1\|859739_860138_+	RcnB family protein	NA	NA	NA	NA
WP_011000770.1\|860630_861251_+	glutathione transferase GstA	NA	NA	NA	NA
WP_028860305.1\|861646_862453_+	endoglucanase	NA	NA	NA	NA
WP_071654075.1\|862467_862683_-	ester cyclase	NA	NA	NA	NA
WP_016727157.1\|862902_863502_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011000774.1\|863635_864364_+	nitroreductase family protein	NA	NA	NA	NA
WP_011000775.1\|864384_864690_+	hypothetical protein	NA	NA	NA	NA
WP_011000779.1\|867209_868316_+	type III secretion system YopJ family effector PopP1	NA	NA	NA	NA
WP_011000780.1\|868652_869465_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_162014406.1\|869566_869923_+	hypothetical protein	NA	NA	NA	NA
WP_086004961.1\|869968_871086_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.0e-47	40.0
WP_011000783.1\|871127_872081_+	hypothetical protein	NA	NA	NA	NA
WP_011000784.1\|872260_874870_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_043876558.1\|875333_876083_+	phospholipase D family protein	NA	NA	NA	NA
WP_011000786.1\|876463_876754_+	DNA-binding protein	NA	NA	NA	NA
WP_011000787.1\|876750_877248_+	hypothetical protein	NA	NA	NA	NA
WP_011000788.1\|877244_878117_+	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	4.4e-103	66.4
WP_011000789.1\|878134_878767_+	hypothetical protein	K4ICM8	Acidithiobacillus_phage	4.7e-62	67.5
WP_043876559.1\|878776_879244_+	hypothetical protein	K4I3X7	Acidithiobacillus_phage	3.5e-38	54.2
WP_043876560.1\|879249_879648_+	hypothetical protein	NA	NA	NA	NA
WP_011000792.1\|879631_881929_+	hypothetical protein	K4HZY1	Acidithiobacillus_phage	5.0e-295	65.3
WP_011000793.1\|882160_882373_+	hypothetical protein	NA	NA	NA	NA
WP_011000794.1\|882362_882770_+	hypothetical protein	NA	NA	NA	NA
WP_011000796.1\|883333_884656_+\|transposase	IS5-like element ISRso9 family transposase	K4ICS3	Acidithiobacillus_phage	1.2e-54	48.6
WP_011000798.1\|886056_887292_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	2.0e-194	81.5
WP_043876561.1\|887251_887497_-	hypothetical protein	NA	NA	NA	NA
WP_043876562.1\|887599_887965_-	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	1.4e-29	56.3
WP_011000801.1\|888189_888378_-	hypothetical protein	K4HZY7	Acidithiobacillus_phage	1.8e-14	67.9
WP_043876718.1\|888476_888827_-	hypothetical protein	NA	NA	NA	NA
WP_011000803.1\|888954_889449_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	6.3e-22	57.3
WP_011000804.1\|889538_889811_-	hypothetical protein	NA	NA	NA	NA
WP_011000805.1\|889904_890441_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	6.5e-73	81.5
WP_011000806.1\|890440_892423_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	86.2
WP_011000807.1\|892466_892976_+\|portal	phage portal protein	A0A0F6WCR7	Sinorhizobium_phage	1.3e-25	45.0
WP_011000808.1\|892986_893379_+	hypothetical protein	NA	NA	NA	NA
WP_011000809.1\|893379_893601_+	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	5.9e-12	58.9
WP_011000810.1\|893600_895127_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	7.6e-151	57.9
WP_011000811.1\|895136_896387_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	2.3e-60	41.2
WP_011000812.1\|896396_896774_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.0e-24	49.6
WP_011000813.1\|896780_897785_+\|capsid	major capsid protein	A0A1B2LRS0	Wolbachia_phage	8.1e-109	66.3
WP_011000814.1\|897787_898090_+	hypothetical protein	NA	NA	NA	NA
WP_011000815.1\|898095_898542_+	hypothetical protein	NA	NA	NA	NA
WP_011000816.1\|898664_899438_+	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	4.7e-48	44.4

DBSCAN-SWA_2

909710 : 918732

Ralstonia_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011000828.1\|909710_913301_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	0.0e+00	53.5
WP_043876720.1\|913312_914479_+	hypothetical protein	NA	NA	NA	NA
WP_011000830.1\|914482_914965_+	hypothetical protein	A0A0M4TU90	Ralstonia_phage	2.0e-12	44.0
WP_011000831.1\|914961_915360_+	hypothetical protein	NA	NA	NA	NA
WP_011000832.1\|915364_917209_+	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	8.2e-107	46.7
WP_011000833.1\|917218_917443_+	hypothetical protein	A0A0M5MVN2	Ralstonia_phage	4.7e-17	58.1
WP_003270772.1\|917510_917801_+	membrane protein	K4I011	Acidithiobacillus_phage	3.1e-13	47.6
WP_011000834.1\|917797_918274_+	hypothetical protein	K4ICR8	Acidithiobacillus_phage	7.1e-71	82.9
WP_011000835.1\|918270_918732_+	lysozyme	K4I410	Acidithiobacillus_phage	4.6e-67	83.0

DBSCAN-SWA_3

964600 : 972836

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011000865.1\|964600_965974_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.5e-76	38.9
WP_049842162.1\|966000_966948_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	9.0e-17	27.6
WP_011000867.1\|966944_967940_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	4.1e-28	32.3
WP_011000868.1\|968069_968387_+	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_011000869.1\|968490_969393_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	8.2e-52	40.8
WP_028852812.1\|969473_970586_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_011000871.1\|970703_971627_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	9.3e-43	35.9
WP_011000872.1\|971783_972836_+	methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-26	33.5

DBSCAN-SWA_4

1004869 : 1013032

Ralstonia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043876725.1\|1004869_1007527_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	0.0e+00	85.3
WP_011000911.1\|1007529_1008369_+	hypothetical protein	A0A077KEQ4	Ralstonia_phage	1.2e-108	74.6
WP_011000912.1\|1008365_1010606_+	alpha/beta hydrolase	A0A077K801	Ralstonia_phage	0.0e+00	83.1
WP_011000913.1\|1010614_1010881_+	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	4.9e-05	52.2
WP_011000914.1\|1011504_1011771_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.4e-12	50.6
WP_011000915.1\|1011788_1012517_+	hypothetical protein	NA	NA	NA	NA
WP_080511051.1\|1012538_1012757_+	hypothetical protein	NA	NA	NA	NA
WP_080511052.1\|1012804_1013032_+	ogr/Delta-like zinc finger family protein	E5E3P1	Burkholderia_phage	3.0e-11	51.7

DBSCAN-SWA_5

1756421 : 1830338

Burkholderia_virus(20.83%)

portal,protease,lysis,head,tRNA,transposase,integrase,terminase,tail,capsid

attL 1778559:1778579|attR 1825682:1825702

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011001577.1\|1756421_1757402_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_011001578.1\|1757468_1758830_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_011001579.1\|1758925_1760110_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA
WP_080511060.1\|1760114_1760822_+	hypothetical protein	NA	NA	NA	NA
WP_011001581.1\|1760864_1762079_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_011001582.1\|1762106_1762964_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_011001583.1\|1763075_1764269_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_043876597.1\|1764303_1767735_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_011001585.1\|1767906_1768668_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011001586.1\|1768664_1769171_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011001587.1\|1769250_1769778_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_016721800.1\|1769836_1770385_-	peroxiredoxin	NA	NA	NA	NA
WP_011001589.1\|1770550_1771912_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_003267785.1\|1771949_1772672_-	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	1.4e-33	35.8
WP_020425251.1\|1772951_1773302_+	hypothetical protein	NA	NA	NA	NA
WP_011001591.1\|1773373_1774990_+	DUF1800 family protein	NA	NA	NA	NA
WP_011001592.1\|1775017_1776202_+	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_011001593.1\|1776202_1777075_-	presqualene diphosphate synthase HpnD	NA	NA	NA	NA
WP_011001594.1\|1777211_1778420_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011001595.1\|1778486_1781606_+	efflux RND transporter permease subunit	NA	NA	NA	NA
1778559:1778579	attL	NA	NA	NA	NA
WP_011001596.1\|1781994_1782999_+\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	2.9e-66	49.8
WP_080511061.1\|1782999_1783308_-	hypothetical protein	NA	NA	NA	NA
WP_011001597.1\|1783361_1784927_-	hypothetical protein	Q8W6Q9	Burkholderia_virus	3.1e-30	54.1
WP_011001598.1\|1784928_1785729_-	PRTRC system ThiF family protein	NA	NA	NA	NA
WP_011001599.1\|1785725_1786511_-	PRTRC system protein A	NA	NA	NA	NA
WP_011001600.1\|1786512_1787235_-	PRTRC system protein B	NA	NA	NA	NA
WP_011001601.1\|1787242_1788292_-	PRTRC system protein F	NA	NA	NA	NA
WP_011001602.1\|1788288_1788678_-	PRTRC system protein C	NA	NA	NA	NA
WP_011001603.1\|1788690_1789284_-	PRTRC system protein E	NA	NA	NA	NA
WP_011001604.1\|1789309_1789546_-	hypothetical protein	NA	NA	NA	NA
WP_011001605.1\|1789542_1789974_-	hypothetical protein	A0A291LIA5	Streptomyces_phage	9.4e-06	36.8
WP_011001606.1\|1789983_1790199_-	hypothetical protein	NA	NA	NA	NA
WP_011001607.1\|1790204_1790357_-	hypothetical protein	NA	NA	NA	NA
WP_011001608.1\|1790353_1790791_-	hypothetical protein	NA	NA	NA	NA
WP_011001609.1\|1790787_1791162_-	hypothetical protein	NA	NA	NA	NA
WP_157048845.1\|1791170_1791308_-	hypothetical protein	NA	NA	NA	NA
WP_011001611.1\|1791855_1792161_-	hypothetical protein	NA	NA	NA	NA
WP_086004752.1\|1792211_1793014_-\|transposase	IS5-like element IS1421 family transposase	NA	NA	NA	NA
WP_011001614.1\|1793028_1793487_-	hypothetical protein	NA	NA	NA	NA
WP_078222094.1\|1793625_1794150_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011001616.1\|1794706_1795210_+	hypothetical protein	NA	NA	NA	NA
WP_011001617.1\|1795206_1795617_+	hypothetical protein	NA	NA	NA	NA
WP_011001618.1\|1795625_1795823_+	hypothetical protein	NA	NA	NA	NA
WP_043876600.1\|1795819_1796854_+	hypothetical protein	NA	NA	NA	NA
WP_011001619.1\|1796850_1797147_+	hypothetical protein	NA	NA	NA	NA
WP_011001620.1\|1797170_1797773_+	hypothetical protein	NA	NA	NA	NA
WP_011001621.1\|1797956_1798331_+	HNH endonuclease	A0A1B0RXJ3	Streptococcus_phage	2.8e-22	43.1
WP_049832880.1\|1798754_1799096_+	hypothetical protein	NA	NA	NA	NA
WP_043876602.1\|1799140_1800811_+\|terminase	terminase large subunit	C7BGG7	Burkholderia_phage	4.8e-207	62.4
WP_011001622.1\|1800813_1800972_+	hypothetical protein	NA	NA	NA	NA
WP_011001623.1\|1800968_1802192_+\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	7.7e-162	69.6
WP_011001624.1\|1802199_1802811_+\|head,protease	HK97 family phage prohead protease	A0A1J0GUZ0	Halomonas_phage	9.4e-60	63.1
WP_011001625.1\|1802821_1804060_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	2.5e-128	56.8
WP_011001626.1\|1804093_1804417_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011001627.1\|1804424_1804751_+\|head	phage head closure protein	NA	NA	NA	NA
WP_011001628.1\|1804753_1805257_+	hypothetical protein	I7GSL4	Xanthomonas_virus	6.2e-09	33.3
WP_011001629.1\|1805246_1805600_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011001630.1\|1805663_1806317_+\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	2.2e-54	51.6
WP_043876603.1\|1806322_1806643_+	hypothetical protein	NA	NA	NA	NA
WP_080511062.1\|1806690_1806951_+	DUF1799 domain-containing protein	A0A2R3UAE2	Siphoviridae_environmental_samples	5.5e-09	45.5
WP_011001631.1\|1806952_1809826_+\|tail	phage tail tape measure protein	A0A1V0E821	Vibrio_phage	1.7e-90	33.8
WP_011001632.1\|1809828_1810167_+\|tail	phage tail protein	Q8W6T5	Burkholderia_virus	3.6e-21	47.7
WP_011001633.1\|1810163_1810841_+\|tail	phage tail protein	A0A1W6JT73	Escherichia_phage	7.8e-31	46.7
WP_011001634.1\|1810846_1811443_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_011001635.1\|1811439_1812141_+\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	2.6e-77	62.4
WP_011001636.1\|1812142_1812853_+	C40 family peptidase	D6PG99	uncultured_phage	2.6e-69	54.5
WP_011001637.1\|1812856_1813459_+\|tail	tail assembly protein	Q8W6T1	Burkholderia_virus	1.8e-50	55.5
WP_011001638.1\|1813528_1813867_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_043876605.1\|1813863_1814118_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_011001639.1\|1814169_1817325_+	host specificity protein J	A4JX16	Burkholderia_virus	0.0e+00	56.7
WP_043876606.1\|1817324_1817636_+	hypothetical protein	NA	NA	NA	NA
WP_011001640.1\|1817661_1818318_+	hypothetical protein	NA	NA	NA	NA
WP_011001641.1\|1818386_1818878_+	glycoside hydrolase family protein	D5LH07	Escherichia_phage	8.7e-56	67.7
WP_011001642.1\|1818877_1819186_+	hypothetical protein	NA	NA	NA	NA
WP_011001643.1\|1819188_1819464_+	hypothetical protein	NA	NA	NA	NA
WP_011001644.1\|1819463_1820009_+\|lysis	lysis protein	A0A0H5AUG6	Pseudomonas_phage	2.6e-08	43.6
WP_011001645.1\|1820272_1821238_-\|transposase	IS5-like element ISRso18 family transposase	A0A077K814	Ralstonia_phage	7.9e-170	93.1
WP_071623775.1\|1821304_1822375_-	hypothetical protein	NA	NA	NA	NA
WP_119918759.1\|1822503_1822773_-	hypothetical protein	NA	NA	NA	NA
WP_043876739.1\|1822837_1823875_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_011001649.1\|1824371_1824566_+	hypothetical protein	NA	NA	NA	NA
WP_011001650.1\|1824637_1826611_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
1825682:1825702	attR	NA	NA	NA	NA
WP_011001651.1\|1826865_1828215_+	trigger factor	NA	NA	NA	NA
WP_003267806.1\|1828244_1828898_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.8e-53	54.9
WP_011001652.1\|1829063_1830338_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.9e-135	58.9

DBSCAN-SWA_6

1987270 : 2056036

Pseudomonas_phage(50.0%)

integrase,tRNA,transposase

attL 2031675:2031692|attR 2061804:2061821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011001756.1\|1987270_1988761_+\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_011001757.1\|1988757_1989102_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011001758.1\|1989575_1990199_+	flavin reductase family protein	NA	NA	NA	NA
WP_011001759.1\|1990209_1990653_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_043876743.1\|1990745_1991447_-	Asp/Glu racemase	NA	NA	NA	NA
WP_011001761.1\|1991500_1992532_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_011001762.1\|1992676_1993636_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_011001763.1\|1993687_1994827_-	cupin domain-containing protein	NA	NA	NA	NA
WP_011001764.1\|1994865_1997184_-	bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase	NA	NA	NA	NA
WP_011001765.1\|1997180_1997627_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_011001766.1\|1997631_1999143_-	indolepyruvate oxidoreductase subunit beta family protein	NA	NA	NA	NA
WP_086004966.1\|2001544_2002755_-\|transposase	IS3-like element ISRso10 family transposase	A0A1B0Z042	Pseudomonas_phage	8.9e-102	65.5
WP_011001770.1\|2003333_2004362_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011001771.1\|2004549_2005443_-	transporter	NA	NA	NA	NA
WP_011001772.1\|2005546_2007154_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011001773.1\|2007157_2007949_-	cyclase family protein	NA	NA	NA	NA
WP_011001774.1\|2007985_2008537_-	flavin reductase family protein	NA	NA	NA	NA
WP_011001775.1\|2008547_2009798_-	alanine-phosphoribitol ligase	NA	NA	NA	NA
WP_011001776.1\|2009845_2010634_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_162939063.1\|2011211_2019116_-	Type III effector protein (Skwp 4)	NA	NA	NA	NA
WP_011001778.1\|2019455_2020334_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_011001779.1\|2020539_2021427_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_080511063.1\|2021715_2022018_-	hypothetical protein	NA	NA	NA	NA
WP_043876613.1\|2022268_2022985_-	hypothetical protein	NA	NA	NA	NA
WP_011001781.1\|2023800_2025276_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_011001782.1\|2025557_2026061_-	hypothetical protein	NA	NA	NA	NA
WP_011001783.1\|2026053_2028357_-	hypothetical protein	NA	NA	NA	NA
WP_011001784.1\|2028353_2029922_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011001785.1\|2029857_2031096_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011001786.1\|2031487_2031943_-	hypothetical protein	NA	NA	NA	NA
2031675:2031692	attL	NA	NA	NA	NA
WP_011001787.1\|2032081_2032555_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_043876614.1\|2032885_2033362_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_011001789.1\|2033471_2033939_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011001790.1\|2034094_2035633_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_011001791.1\|2035645_2036803_-	HlyD family secretion protein	NA	NA	NA	NA
WP_011001792.1\|2036827_2038255_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_155738957.1\|2039096_2039258_-	hypothetical protein	NA	NA	NA	NA
WP_011001794.1\|2039256_2039874_+	FABP family protein	NA	NA	NA	NA
WP_011001795.1\|2040078_2041470_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_011001796.1\|2041646_2042639_+	ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_011001797.1\|2042642_2044619_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_011001798.1\|2044621_2045248_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_011001799.1\|2045244_2045622_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_011001800.1\|2045648_2047382_+	nitrite/sulfite reductase	NA	NA	NA	NA
WP_011001801.1\|2047368_2047878_+	DUF934 domain-containing protein	NA	NA	NA	NA
WP_011001433.1\|2047947_2049282_+\|transposase	IS4-like element ISRso13 family transposase	NA	NA	NA	NA
WP_043876615.1\|2051440_2051731_-	hypothetical protein	NA	NA	NA	NA
WP_011001803.1\|2051854_2052211_-	hypothetical protein	NA	NA	NA	NA
WP_011001804.1\|2052493_2052661_-	hypothetical protein	NA	NA	NA	NA
WP_011001805.1\|2052657_2052951_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011001806.1\|2052954_2053215_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_011001807.1\|2053400_2054642_-	hypothetical protein	NA	NA	NA	NA
WP_011001808.1\|2054818_2056036_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.1e-123	56.1
2061804:2061821	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2084601 : 2115573

Ralstonia_phage(66.67%)

plate,portal,head,holin,integrase,tail,capsid,terminase

attL 2084443:2084460|attR 2125140:2125157

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2084443:2084460	attL	NA	NA	NA	NA
WP_011001833.1\|2084601_2085837_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	3.4e-234	98.8
WP_011001834.1\|2085811_2086027_-	AlpA family transcriptional regulator	A0A077K9Z8	Ralstonia_phage	4.5e-33	97.2
WP_011001835.1\|2086023_2088732_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	0.0e+00	99.6
WP_011001836.1\|2088786_2088993_-	hypothetical protein	A0A077K9T6	Ralstonia_phage	6.9e-31	100.0
WP_011001837.1\|2088985_2089228_-	hypothetical protein	A0A077K830	Ralstonia_phage	1.6e-39	97.5
WP_011001838.1\|2089227_2089440_-	hypothetical protein	A0A077KET1	Ralstonia_phage	2.2e-24	94.4
WP_011001839.1\|2089436_2089604_-	hypothetical protein	A4PE63	Ralstonia_virus	3.6e-14	79.2
WP_011001840.1\|2089600_2089834_-	hypothetical protein	A4PE62	Ralstonia_virus	1.2e-12	55.4
WP_011001841.1\|2089948_2090197_-	ogr/Delta-like zinc finger family protein	A0A077K829	Ralstonia_phage	4.7e-34	82.9
WP_080511084.1\|2090193_2090478_-	DNA-binding protein	A0A1S5NNI6	Burkholderia_phage	5.0e-32	71.7
WP_043876747.1\|2090764_2091268_+	helix-turn-helix transcriptional regulator	A0A077K9Z1	Ralstonia_phage	1.9e-45	64.7
WP_011001847.1\|2091937_2092489_-	hypothetical protein	A0A077K9T2	Ralstonia_phage	6.2e-95	96.6
WP_011001849.1\|2092848_2093973_-	phage late control D family protein	A4PE54	Ralstonia_virus	3.7e-203	96.5
WP_011001850.1\|2093969_2094392_-\|tail	phage tail protein	A4PE53	Ralstonia_virus	1.4e-73	99.3
WP_011001851.1\|2094394_2097058_-	hypothetical protein	A4PE52	Ralstonia_virus	0.0e+00	93.6
WP_011001852.1\|2097054_2097156_-\|tail	GpE family phage tail protein	A0A077K821	Ralstonia_phage	2.1e-09	97.0
WP_011001853.1\|2097152_2097509_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.2e-54	98.3
WP_011001854.1\|2097554_2098064_-\|tail	phage major tail tube protein	A0A077KER7	Ralstonia_phage	8.3e-94	100.0
WP_011001855.1\|2098095_2099271_-\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	3.9e-219	96.2
WP_011001856.1\|2099364_2099829_-	hypothetical protein	A0A077K8R9	Ralstonia_phage	6.2e-80	92.2
WP_011001857.1\|2099825_2100578_-	hypothetical protein	A4PE47	Ralstonia_virus	1.6e-117	90.4
WP_011001858.1\|2100590_2102255_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	0.0e+00	98.7
WP_011001859.1\|2102261_2102879_-\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	6.5e-101	96.2
WP_011001860.1\|2102871_2103780_-\|plate	baseplate assembly protein	A0A077K9X9	Ralstonia_phage	8.8e-155	96.0
WP_011001861.1\|2103782_2104130_-	GPW/gp25 family protein	A4PE42	Ralstonia_virus	1.4e-55	93.9
WP_011001862.1\|2104126_2104744_-\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	1.3e-109	94.6
WP_011001863.1\|2105006_2105702_+	hypothetical protein	NA	NA	NA	NA
WP_011001864.1\|2105779_2106232_+	hypothetical protein	A0A077KER3	Ralstonia_phage	1.4e-55	72.7
WP_011001865.1\|2106253_2106700_-	phage virion morphogenesis protein	A0A077K9X5	Ralstonia_phage	1.3e-69	92.5
WP_011001866.1\|2106696_2107131_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	3.0e-76	96.5
WP_011001867.1\|2107127_2107628_-	hypothetical protein	A0A077K9R7	Ralstonia_phage	1.1e-77	92.8
WP_011001868.1\|2107624_2108431_-	DUF3380 domain-containing protein	A4PE36	Ralstonia_virus	1.0e-146	98.9
WP_011001869.1\|2108427_2108742_-\|holin	phage holin family protein	A4PE35	Ralstonia_virus	1.7e-49	98.1
WP_011001870.1\|2108738_2109143_-\|holin	phage holin family protein	A0A077K9X1	Ralstonia_phage	8.2e-28	97.8
WP_011001871.1\|2109158_2109365_-\|tail	tail protein X	A0A077K8R0	Ralstonia_phage	1.8e-31	100.0
WP_011001872.1\|2109364_2109844_-\|head	head completion/stabilization protein	A4PE32	Ralstonia_virus	2.3e-85	100.0
WP_011001873.1\|2109940_2110663_-\|terminase	terminase endonuclease subunit	A0A077K804	Ralstonia_phage	2.6e-125	98.3
WP_011001874.1\|2110659_2111676_-\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	4.7e-189	100.0
WP_011001875.1\|2111729_2112569_-\|capsid	GPO family capsid scaffolding protein	A0A077K9W8	Ralstonia_phage	1.8e-146	95.3
WP_011001878.1\|2114487_2115573_+\|portal	phage portal protein	A0A077K9Q8	Ralstonia_phage	2.7e-206	97.0
2125140:2125157	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2829831 : 2839964

unidentified_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011002537.1\|2829831_2831376_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.6e-23	33.6
WP_011002538.1\|2831375_2831885_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_011002539.1\|2831918_2832563_+	deoxynucleoside kinase	M1IA15	Paramecium_bursaria_Chlorella_virus	1.7e-06	27.8
WP_011002540.1\|2832619_2833444_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	1.9e-34	31.3
WP_011002541.1\|2833455_2834163_+	ABC transporter permease	NA	NA	NA	NA
WP_011002542.1\|2834170_2834857_+	energy-coupling factor ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.5e-13	27.2
WP_011002543.1\|2834812_2836693_-	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	A0A0B5J984	Pandoravirus	4.6e-57	37.4
WP_011002544.1\|2836728_2837871_-	molecular chaperone DnaJ	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	2.9e-22	32.7
WP_028853574.1\|2838005_2839964_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.7e-147	49.3

DBSCAN-SWA_9

2855123 : 2903206

Bacillus_phage(16.67%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011002563.1\|2855123_2856755_+\|protease	MprA protease, GlyGly-CTERM protein-sorting domain-containing form	NA	NA	NA	NA
WP_011002564.1\|2856973_2859013_+\|protease	MprA protease, GlyGly-CTERM protein-sorting domain-containing form	A0A1B0T6A2	Bacillus_phage	3.5e-10	34.7
WP_011002565.1\|2859068_2859689_-	rhombosortase	NA	NA	NA	NA
WP_011002566.1\|2859685_2862553_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_011002567.1\|2862731_2867012_+	TIGR02099 family protein	NA	NA	NA	NA
WP_011002568.1\|2867017_2867887_+	carbon-nitrogen hydrolase family protein	M1H5W0	Paramecium_bursaria_Chlorella_virus	8.3e-09	25.3
WP_011002569.1\|2867914_2869375_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_011002570.1\|2869767_2870847_+	3-deoxy-7-phosphoheptulonate synthase AroG	A0A2I6UFP9	Klebsiella_phage	1.1e-76	45.0
WP_011002571.1\|2870970_2871306_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011002572.1\|2871590_2872487_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_011002573.1\|2872560_2873118_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_011002574.1\|2873240_2874659_+	FAD-binding protein	NA	NA	NA	NA
WP_011002575.1\|2874669_2875560_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011002576.1\|2875730_2877224_+	FAD-binding protein	NA	NA	NA	NA
WP_011002577.1\|2877234_2878353_+	glycolate oxidase subunit GlcE	NA	NA	NA	NA
WP_011002578.1\|2878362_2879610_+	glycolate oxidase subunit GlcF	NA	NA	NA	NA
WP_011002579.1\|2879661_2880039_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_011002580.1\|2880035_2880758_+	LrgB family protein	NA	NA	NA	NA
WP_011002581.1\|2880916_2881312_+	VOC family protein	NA	NA	NA	NA
WP_011002582.1\|2881362_2881842_+	cupin domain-containing protein	NA	NA	NA	NA
WP_011002583.1\|2881884_2882583_+	YafY family transcriptional regulator	NA	NA	NA	NA
WP_011002584.1\|2882599_2883097_-	glutathione peroxidase	Q6VZR0	Canarypox_virus	5.5e-26	40.2
WP_011002585.1\|2883192_2886405_-	pilus assembly protein	NA	NA	NA	NA
WP_011002586.1\|2886436_2886973_-	pilus assembly PilX N-terminal domain-containing protein	NA	NA	NA	NA
WP_016723683.1\|2886976_2888005_-	PilW family protein	NA	NA	NA	NA
WP_011002588.1\|2888001_2888592_-	type IV pilus modification protein PilV	NA	NA	NA	NA
WP_016723684.1\|2888588_2889077_-	GspH/FimT family pseudopilin	NA	NA	NA	NA
WP_011002590.1\|2889080_2889521_-	type IV pilin protein	NA	NA	NA	NA
WP_011002591.1\|2889715_2890855_-	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_011002592.1\|2890907_2891951_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_011002593.1\|2892075_2892798_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011002594.1\|2892832_2893657_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_011002595.1\|2893678_2893957_+	hypothetical protein	NA	NA	NA	NA
WP_011002596.1\|2893953_2894829_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_003271865.1\|2894902_2895403_-	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	2.1e-20	36.2
WP_011002597.1\|2895561_2895804_-	hypothetical protein	NA	NA	NA	NA
WP_011002598.1\|2895862_2896111_-	hypothetical protein	NA	NA	NA	NA
WP_016723690.1\|2896329_2897274_-	hydrogen peroxide-inducible genes activator	A0A2P0ZL89	Lactobacillus_phage	4.0e-09	23.9
WP_011002600.1\|2897879_2898422_-	hypothetical protein	NA	NA	NA	NA
WP_172833515.1\|2898491_2898980_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_011002602.1\|2898997_2901262_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_043876652.1\|2901311_2902031_-	molecular chaperone	NA	NA	NA	NA
WP_011002604.1\|2902149_2902653_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_011002605.1\|2902702_2903206_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_10

3487428 : 3498183

Acidithiobacillus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011003116.1\|3487428_3487893_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.7e-53	67.6
WP_011003117.1\|3488035_3490315_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	0.0e+00	74.5
WP_011003118.1\|3490311_3490572_-	DNA-binding protein	K4I1D6	Acidithiobacillus_phage	5.5e-17	62.0
WP_011003119.1\|3490568_3491327_-	hypothetical protein	K4HZA0	Acidithiobacillus_phage	1.3e-82	62.1
WP_011003120.1\|3491313_3491862_-	HNH endonuclease	A0A1B0TRC1	Escherichia_phage	4.1e-22	39.3
WP_011003121.1\|3491861_3492374_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	7.2e-53	67.5
WP_011003122.1\|3492381_3493029_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.2e-81	73.3
WP_011003123.1\|3493025_3493931_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	2.4e-104	68.2
WP_043876681.1\|3493902_3494436_-	HNH endonuclease	A0A172JFU7	Citrobacter_phage	2.1e-23	39.2
WP_011003125.1\|3494450_3494933_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	3.4e-44	57.5
WP_011003126.1\|3494943_3495207_-	hypothetical protein	K4I3X3	Acidithiobacillus_phage	3.5e-19	75.4
WP_011003127.1\|3495434_3495896_+	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	1.2e-46	64.1
WP_011003128.1\|3495945_3498183_+	hypothetical protein	K4I1D0	Acidithiobacillus_phage	4.0e-289	66.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_003296

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CRISPR-Cas detection and classification

Crispr_ID: NC_003296_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003296_1

1154123-1154303

Orphan

Consensus_repeat	Method
GCGGGCGCGCAAGCACTGGCTGCCAACACCGCGCTCA	PILER-CR

2 spacers

The CRISPR arrays of NC_003296_1

>merge|NC_003296|1|1154123-1154303|PILER-CR
GCGGGCGCGCAAGCACTGGCCGACAACACTGCGCTCACCACGCTCCGCGTCACCGGCAATCAGATCGGTATGGCGGGCGCGCAAGCACTGGCTGCCAATCGCAGCCTGACCAAGCTCAATATCAGCCAGAATGACATCCGGTCCGCGGGCGCGCAGGCACTGGCTGCCAACACCTCGCTCA

>NC_003296|1|1|1154123-1154303|PILER-CR
GCGGGCGCGCAAGCACTGGCCGACAACACTGCGCTCA	CCACGCTCCGCGTCACCGGCAATCAGATCGGTATG
GCGGGCGCGCAAGCACTGGCTGCCAATCGCAGCCTGA	CCAAGCTCAATATCAGCCAGAATGACATCCGGTCCGCGGGCGCGCA
GGCACTGGCTGCCAACACCTCGCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003296.1\|WP_011004209.1\|1150165_1151107_-\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
NC_003296.1\|WP_011004208.1\|1148890_1150084_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|235980
NC_003296.1\|WP_011004218.1\|1165266_1165677_+\|hypothetical-protein	unknown	unknown	unknown
NC_003296.1\|WP_011004217.1\|1164116_1164968_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119349
NC_003296.1\|WP_011001782.1\|1157905_1158409_-\|hypothetical-protein	unknown	unknown	unknown
NC_003296.1\|WP_011004202.1\|1143296_1144088_-\|hypothetical-protein	unknown	unknown	unknown
NC_003296.1\|WP_011001785.1\|1162205_1163444_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271175
NC_003296.1\|WP_011001784.1\|1160701_1162270_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271175
NC_003296.1\|WP_119918804.1\|1144150_1145203_-\|S1/P1-nuclease	unknown	unknown	gnl\|CDD\|211382
NC_003296.1\|WP_011004216.1\|1163695_1164091_-\|hypothetical-protein	unknown	unknown	unknown
NC_003296.1\|WP_011004204.1\|1145572_1145956_-\|DUF4437-domain-containing-protein	unknown	unknown	gnl\|CDD\|380365
NC_003296.1\|WP_011004215.1\|1157417_1157633_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379256
NC_003296.1\|WP_011004207.1\|1147821_1148751_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_003296.1\|WP_011004219.1\|1165748_1167053_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|273829
NC_003296.1\|WP_011004213.1\|1155503_1156394_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NC_003296.1\|WP_080511113.1\|1146059_1146974_-\|LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274657
NC_003296.1\|WP_011001783.1\|1158401_1160705_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227032
NC_003296.1\|WP_011004206.1\|1147050_1147719_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|225355
NC_003296.1\|WP_011004201.1\|1141333_1143277_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_003296.1\|WP_043876846.1\|1151405_1152512_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745

Protein	Function_ID	Function_description	E-value
NC_003296.1\|WP_011004209.1\|1150165_1151107_-\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.14463e-153
NC_003296.1\|WP_011004208.1\|1148890_1150084_+\|FAD-dependent-monooxygenase	gnl\|CDD\|235980	PRK07236, PRK07236, hypothetical protein; Provisional.	0
NC_003296.1\|WP_011004217.1\|1164116_1164968_+\|hypothetical-protein	gnl\|CDD\|119349	cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model.	6.76501e-08
NC_003296.1\|WP_011001785.1\|1162205_1163444_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	7.50736e-08
NC_003296.1\|WP_011001784.1\|1160701_1162270_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.14896e-09
NC_003296.1\|WP_119918804.1\|1144150_1145203_-\|S1/P1-nuclease	gnl\|CDD\|211382	cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes. This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis.	1.64628e-34
NC_003296.1\|WP_011004204.1\|1145572_1145956_-\|DUF4437-domain-containing-protein	gnl\|CDD\|380365	cd02237, cupin_DAD_ChrR, 2,4'-Dihydroxyacetophenone dioxygenase (DAD) and anti-sigma factor ChrR, and similar proteins; cupin domain. This family includes the proteins 2,4'-Dihydroxyacetophenone dioxygenase (DAD) and anti-sigma factor ChrR. DAD catalyzes the oxidation of 2,4'-dihydroxyacetophenone to 4-hydroxybenzoate and formate as part of the 4-hydroxyacetophenone catabolic pathway. The enzyme is a homotetramer containing one iron per molecule of enzyme. Anti-sigma factor ChrR is a member of the ZAS (Zn2+ anti-sigma) subfamily of group IV anti-sigmas. It inhibits transcriptional activity by binding to the Rsp extra cytoplasmic function (ECF) sigma factor E (sigmaE). Some ChrR members contain tandem repeats of two distinct homologous functional domains. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	4.62061e-07
NC_003296.1\|WP_011004215.1\|1157417_1157633_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	2.60947e-05
NC_003296.1\|WP_011004207.1\|1147821_1148751_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.57784e-88
NC_003296.1\|WP_011004219.1\|1165748_1167053_+\|TolC-family-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.75009e-10
NC_003296.1\|WP_011004213.1\|1155503_1156394_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	1.50866e-110
NC_003296.1\|WP_080511113.1\|1146059_1146974_-\|LLM-class-oxidoreductase	gnl\|CDD\|274657	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB\|2B81. [Unknown function, Enzymes of unknown specificity].	5.36069e-159
NC_003296.1\|WP_011001783.1\|1158401_1160705_-\|hypothetical-protein	gnl\|CDD\|227032	COG4688, COG4688, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_003296.1\|WP_011004206.1\|1147050_1147719_-\|DsbA-family-protein	gnl\|CDD\|225355	COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	3.13033e-88
NC_003296.1\|WP_011004201.1\|1141333_1143277_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	4.36643e-83
NC_003296.1\|WP_043876846.1\|1151405_1152512_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.38626e-53

>NC_003296.1|WP_043876846.1|1151405_1152512_+|Gfo/Idh/MocA-family-oxidoreductase
MGTAEPSCRWGILGTAGIARKNWHAILHSGNGRIVAVGSRSAQTAQRFIAECQASAPAPYAVEAVEGYDALIRRPDIDALYIPLPTALRAEWAIKAARAGKHIVIEKPCGVTSADLLCIIDAANAAGVQFMDGVMFMHSSRLQAMRSVLDDGASVGDIRRITSHFSFDADAAWVERNSAVEPAGCLGDVGWYSIRLALFAMQYSMPVEVRGRILRSVKRPDGAGVVPTEFVGELLFDNGVTAALYNAFTTSRQQWADISGSKGYLHLKDFVLPHYGNEVAFTVGNDRFGGDGCFFNLERHEKTVSLPEYSNNHRTAQETGLYRTFGGLVLSGKREPFWPEVALKTQRVMDALLLSANAGGGPVAPIPA
>NC_003296.1|WP_011004209.1|1150165_1151107_-|transcriptional-regulator-GcvA
MDLRKLPNLGALKMFEAAARLESFSRAAEALCVTHSAVSHQIRALEAELGMVLFKRDGRRITLTDPGRRYAERIRSALFEIAAATESMRTGDRERRLVISLLPSFAARWLTPRIGRFIERYPEIDVELQSTHVITDFNRDDVDVVLRLSDGNDPDLFVEPLLDEVFFPACAPTFNGGRLPKTPADLADVTLLRSDYEMWRAWFMAAGLEGWAEPRRGVLYQDASQLMQASMEGQGVGLVRRSLAMQEIINGRLVRLFDIDAPSPWTYWFICPQPLLDTFRVRALREWLHEEVAQFRALYERSPTAVTMAGRAA
>NC_003296.1|WP_011004208.1|1148890_1150084_+|FAD-dependent-monooxygenase
MCTQLATHPHPVNPAPRALVIGGSLGGLFAGNLLRRIGWHVDLYERSAHDLDSRGGGIVLQPDVVEVFRRTGVDLGAMDLGVGSVHRTVLRPDGSIRSRHFAPQTQTSWSLIYTTLRAAFGDAHYHQAKTLARIEQNPPAGTVTAHFTDGSSETADLLIGADGGNSAVRRQLWPDKVPTYAGYLAWRGLVPEEAMPPTAREMLHGDFGFANNRGSHILGYLVPGEHNDVRPGHRLYNWVWYRVADTRLLGEIMTDREGRPRGHSIPEGMLDARWVAHLRDDARALLPPAFREIVEATAQPFAQAIRDLASDHMVSGRVVILGDAASIPRPHTAASTSKAAANALALADALQALPDDVPAALSRWEPEQIALGKALRRQGMEAGNYLLFQRPPEGQVA
>NC_003296.1|WP_011004207.1|1147821_1148751_+|LysR-family-transcriptional-regulator
MDRFGALSAFVAVVEHGGFAPAARRLGLAPSSLTRQLNALEASLGTRLMNRSTRSVTLTEAGAQYYDDARRILEELDSADRTVSELAGPPSGLLRVTMPVAFGRLHVAPAIPAFLRRFPGMRLDIRLTDAMVNLVEDRIDVAIRLGALTAPNLVARKLAPHRRVICASPDYLGEHGTPAQPRDLAHHNCLLFDYLTGDSTWTLTRDGKREKVPVSGNLRANGSELLREAAMGGAGMLLMPTWLVGDDIAAGRLVPVLEPWTPTPGADEGESAIWAVYLPNRRGSKKLAGFLDFLAQHFGAPPYWERYRS
>NC_003296.1|WP_011004206.1|1147050_1147719_-|DsbA-family-protein
MTLTVTITSDFICPWCLIGERRLAKAIGALPGDVAVELKWRPFELNPAMRPEGMDRQTYRSLKFGSWERSRMLDAHTVEAARDDGIAFDYAAIAKTPNTFLAHRLNWFAARRGLATPIANAVFSAYFEHGRDIGDAAVLADIAAENGLGRDEVSAFLAGDEGTRDVREAERAVQAGGVRSVPLFDIDGETVSGAQSVAAFEAALRRAIARTHACGTGACPVS
>NC_003296.1|WP_080511113.1|1146059_1146974_-|LLM-class-oxidoreductase
MFQPGRLTLGLMLPTAPLDHGIPDMTGQLDLAADADRYGFAALWTRDVPLFDPQFNDAGQIYDPWVWLGQLATVTRTIALSTAGIVLPLRHPLHTAKAAASVDIVSAGRFLLGAASGDRPSEYPAFNRSHEARGAVYREYIDVIRRSTAEDYPALSGTFGTLRDLDLLPKPTGRHLPILAIGSAQQSLQWIARNLDGWVTYFRPVETQRPRLDLWRSVVETQAGGAFLPFAQSMFIDLADDPDTAPSPIFLGYRLGRNRLIEELQALARLGANHVGFNLRHSVRPARDVLQELAECVLPLFPSA
>NC_003296.1|WP_011004204.1|1145572_1145956_-|DUF4437-domain-containing-protein
MRKPDVTVVDTNRIPWERLDVPELNAVIPQKICVVDGDTGMAVIKIRYQAGFTNVSHWHNCAHGMYVLDGILVTSAGSFGPGSFVWFPEGTTMSHGAQADNDVTFLFITNKPFDIHYTHLEGDAPGQ
>NC_003296.1|WP_119918804.1|1144150_1145203_-|S1/P1-nuclease
MHRDGWFPLEEASMSPANPLLRAALAWAIMTACASAFAFGPDGHQTVGELADSLIAGTNAESQVQNILGMTLEQASVWADCAKGVTRTQSGKFVYQGAGHYPECKPFETTTGKSAMVAFVKRNWSGCHPAADEEVCHKQYHYTDVALQRGQYQQGLVGTSDHDIVAAIRAAIIKLQGGTTPSPIDFASKREALLLLSHYVGDIHQPLHVSAVYLDAQGHVVDPDQGTFDPQTKTIGGNSILDAGKKLHFEWDQVPAALKPDQLGVSGVAEARAIPLTSGDIISWPAQWATDTMHSAAPAFSGTAFSAEDASKHWQVTLPANYVSERETVQRAQLIKAGARLAQLLQAIWP
>NC_003296.1|WP_011004202.1|1143296_1144088_-|hypothetical-protein
MAYSVPLPLRPSLTALVNALLPLASWLETKRYVPDPSSLIPPASPLPWRTGPVSLDADSLALISAFEAWVDDDATNEALAPRWLMLKARPTAFFPYQVSSVPAWRAARGLSPDAAFAPFTGPGANMSYLLARPGASADPGDSVPRARYYDQGFTLLQSAIDQAGGPITDWAAFANALLSNAVAAWPATAVVSSSLFIKRLTCDLLIACMDQQNPALAGRDPIWLRAVLIEAGENRHRGNEYGPAQTAVAVVGVLDTLASLPQA
>NC_003296.1|WP_011004201.1|1141333_1143277_-|GMC-family-oxidoreductase
MKSKPDFLIVGSGGGGGTIAWVLASAGYDVLILEQGRNLAQQLRNPVLPFDPAVHDEELFRLRKPDPKRRLRGDYNTFRDLGTRDPARAFDGGWTGSVLGGGSVLWGTWSFRPLPIDFRLKTYYERTGELGQLQKEGYNVADWPLAYQEMMPYFHVAETLLGVSGDRAGMNRSIRESAWYQDLRTRFGGEAWFGTDAQWLPDAAFPLGAYPTTPVGRIVSDGMDHKGMHPFPTPTAIVQPGSAGFGTQAAIANALNQHRDELDGVLWNRPAEQLWSSQIRQACNMCGYCGEYLCWGRTSPKWGTADTTLRELGQRDNAEIRCNAKTLEVLYDAASRRATGVAYLDLTDPDHPRRVEQFAETVIISCGAVQTSRLLLLSGPPEGLGNSSGQLGRNAMFHLFGLGMRTVLGEAFQGRLHGELGPTGNTSTFDTYFVRDGDGRWIKGGHLTSAAKKNPLEDAVNAVNGSSKAGAFLDQLLVNNRTFEIRLTGDDLPCPENRVSLDPTHVDEYGVPVARISRRSISDAAGNKFVGPNEQRLDAAAQGAMKAVFELYAARRGALAAAPKPTQAILSLVGDHQMGTCRMGEDPATSVVNRYGRLHDVENVFVVDSSFMPTGLGLNPMVTVVANALRVGTHIVTRLQQGSMPGR
>NC_003296.1|WP_011004213.1|1155503_1156394_-|VacJ-family-lipoprotein
MRTTHLIVIVFFAQFTSACAVQPKALRSNPDSSFTGKASVDLHEPPHGEEADLRQLKVEQRSDGDEKSDHGDNLNSVNVAGETSQKNPKPSNIDTNSGISDPWEGFNRKTHAINSVLDKYIVRPVGVAYDAVTPDPVQHSVTRFFGNLRGPSTVVNQLLQGKPFKAGQSVSRFVVNTTVGIGGLFDPASSLGLSREDADLGQTFASWGWRDSRYIVLPLLGPTTLRDATSMFGEQKLSPTSYVSDTALKTGLQFIQITNNRARLLARDEIRKQSLDDYIFVRDAWTKRRNHQLSKD
>NC_003296.1|WP_011004215.1|1157417_1157633_-|helix-turn-helix-domain-containing-protein
MRPDTITMTMRQLDRLKVLQALSDGHLKTSIAAARLGLSTRQTLRLLRRYQSEGASSLQNRRQGTPGHRQF
>NC_003296.1|WP_011001782.1|1157905_1158409_-|hypothetical-protein
MTETKTPESIPDDPDLQRILEELLAHDENITARAVVRHHPTLKAASSITRSPARSALLAQYQQRQTEFRRWQRRLPHQASATTAAALADKDLRIAALESQVQLLAASHLAMIKVVGELGGFSKWAAFYEHYAAARKQLEALGALPVASVTPLPSGPSASEETPPPAT
>NC_003296.1|WP_011001783.1|1158401_1160705_-|hypothetical-protein
MNAGYRAYVDLGRTLAEQRGLQWLLPLEPDGRVSKGHGWNLTTLAGDVPPPTHYLNHLGRDAKMLQALAEPSLRAAPLSVGWQELIKTAALEQLLVKRNTTGHIVGNIVRPLRVLATCMPDKEPWQLTVEDGSRAVELARGLQACGKLGEMVESVLRNLFDVQHLADAGPLYRGVPRPRSASTRRRAAFLKSEDELRDSLEQRKRAERLPERRAFWELVRIVMTEPPRSYVDTLRFLCLRSMIVTGLRVGEAVLLPADWQRNRVYYDRQGRPTGEKGGYADALMLRHFAEKQQTEESDSRVLFEKAQYVPEMFRELITETLQRCVELTEPLRRTLRLQTATGRLLPWYAEHDVVPAAHLYPHLTGNPFWAAVDDEDRARLQERYRTQFDVAAFQEIHDLQRSGPRRQLDMAAYIYLNRLGKAMQADDCTLSFRRPDGSVIPTDARKQWGQTCLHIGELEAYLRVAVPTKLSDTEALPLATGTLQSWELLFLTPKRSLAEERDDGLCDVTRVMAVNRPDGGFVANALGERSIGESLFERYGQSAEDKQLRLESHMLRHLQNTELFRLGVADTIISKRFNRRSVAQSYEYDHRSLAEQLDQIELPPEVEISLGEKASTVAKMIQAGRASGPVVATFLRIQADEGDEAAFAYLKTEADGFHATPYGHCLNSFTVDPCPKHLECFTGCRHLSATNLPENRAHLTSLEGKLVAALEHAQARPATTPGRDNQIAHAQVRLDGVRKLLTTADGERPFPDGPDLSMPSPLGVLDD
>NC_003296.1|WP_011001784.1|1160701_1162270_-|tyrosine-type-recombinase/integrase
MIGSRCCAPYHLDSAMLVQPVDLQQWTAKDADHWLGQIVRQLPALPPLLRYYDDFDDATRVIHSPTEATVFALHINGGMQYLDFSAHEHSYALLLKHLFLYLLGGNLHVSTATGYLQATKHFSYAEVLALLMAGPGNCVASWAELRALGKPTEAYGFAKALLRLLCHYRLCGWSPEYREFIGVALPWPARDKYAGVRTGEVFLSVEEEAVIVRYLDETVQAGAGIPHEDLCDAVMLLCAYQFGMRPIQIALLALRDVRVWQDVGDVLPAVHLTFRMVKQRRGAVIKPLLRRVKREWAALPAQLEQVHRARECAGAQRFCSVESAHQVSMRIANLTERLLGVRVTATDLRHTAAQRLVDAGANQEELAAFLGHADVATGLVYFDSSPNQAERVNRAMGLSPVYQRVARIAHARFISAEELSTLKGEQQIAGVPHGLPIAGIGGCTTGQPACPFNPITSCYGCHRFMPVRDTRLHREVLDGLRGVVRFFHDTSRSEASSPAYLQLQHAIAGVQAILAELEGDAQ
>NC_003296.1|WP_011001785.1|1162205_1163444_-|tyrosine-type-recombinase/integrase
MVLQVQHPSIPKRLHGAVLVDGCGLPRYWVSVWAQLALADLAELTRLRKLYAIERLYAYADELLGAGALDDALFSLDEARLGSILEGWFVSIRNQHQITDSDQKRWRAGLDFVVAVTTWLGQGTRHENRLARLDARWQRLNLLYGQLQIQRPHRTNILRALPAVVVEAMYALLDPESDTNPFKGVRTRWRVFTAFVLMLHQGLRRGELLLLNANAIKSGLDARQQRRRYWINVSEQGRVDTDPRYSKPGIKTADSIRQVPVSELTANLVQCYVDNYRGRPDHPYLLNAQTNTPLSTESLTKLFERISTALPAAVLAELEDRTGKTSITPHDLRHTCAVVRLNQLLSQGDSMDEALQKMRTFFGWSHTSDQPANYARAVFEDRLAVVWNNVFDDRVAVLRALPPGLRDAGPTR
>NC_003296.1|WP_011004216.1|1163695_1164091_-|hypothetical-protein
MVQRLERCAAMPNGRLSRCDKPMLLVTSIYQALPWCKKSVRRIVAAFVWRLVSERTDMPGTMIESLGLGPSPNGRSIERIPQKSVGLDRIENMAPFSILKRHADENAALRIVRHVANVDLDVGTVVGTQSS
>NC_003296.1|WP_011004217.1|1164116_1164968_+|hypothetical-protein
MSFEIATWYDTWNSTGLDNLAQRKVPLGYASRYNLAFGEFVPCANGYTVDLNAQFASQVLTQIRTQAPGVLIYAGVGDTGLSATVLDNRRNNNRSTANIVAYLQQQGLNGIAIDSEQDGMTYVPELVSQLGPAFKQAGLGIAVSVPWPGNGPVSLYGDNAVAAFNQHVDAVELQDYSSEGTPADIQVWIHAGVRRAILMGGVCTENGNVQTSLEDTAAWTTFALQSQVRGMFSWRLDNDHGQHGTQEDVDPTFTGAQTIYETVQNYGSGADRSSGVLDVAGST
>NC_003296.1|WP_011004218.1|1165266_1165677_+|hypothetical-protein
MRRSPRWLWFAGFLILTFLTVQLAAAAYACADGRVAVRPVMAMDEMADMTESCPEMAKRTPQDDSPHDGLCLEHCQAGTKSADHVSPQIPAFLPILLGQIEPTPIAALVPLSLAQGDAIARAPPPPIAILHCCFRT
>NC_003296.1|WP_011004219.1|1165748_1167053_+|TolC-family-protein
MHLRFPPRGGRLFALAAALIAVSRLAYAEATCALSLQEAVGLASARSADAETSRAAIQSANEMAVAAGQLPDPVLKFGLDNVPLNKSDQFSLSRDFMTQRSISVVQEFTRADKRRAKADRYAAEAEAAEARRTVGLADVQRNAVAAWLDRWYAEQTGVLLGHHGHPLELARQAAMAAYRSGRGTRADVLAADLEVQKLHDRQDENRASIDMAMVSLERWIGPAARRPLGDRPTLEVPSSVQRLETDAFDAVPEVAVARRDVALAETEIRAAAEAKKPDVTVELMYSQRGSAYSNMGSLNISFPVPWDQGHRQDREVAAKLAQAQEARAKSEIQRRNTRAMVTTRLTELRRNLDRLKRYDETTLPLANAQANAALTAYRTNTGSLSAVAEANHRAVDTAQERLALEARTAKLWTDLAFLVPLPTAQTESATGSPQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1370800-1370834	0	1.0
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	39094-39128	0	1.0
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1037053-1037087	0	1.0
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1154159-1154193	0	1.0
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1154169-1154203	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1370728-1370773	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1067098-1067143	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	981452-981497	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1690381-1690426	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	993393-993438	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1154220-1154265	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1329695-1329740	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1465542-1465587	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1576941-1576986	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1072769-1072814	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1069471-1069516	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	39022-39067	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1045472-1045517	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	919903-919948	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1132652-1132697	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1154230-1154275	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1132652-1132697	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1132652-1132697	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1132656-1132701	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1160275-1160320	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1024871-1024916	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1132651-1132696	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1036981-1037026	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1160276-1160321	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	903237-903282	0	1.0
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	903237-903282	0	1.0
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	981524-981558	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1577013-1577047	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	919975-920009	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1024943-1024977	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	903309-903343	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	903309-903343	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1067037-1067071	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1690320-1690354	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	993332-993366	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1329634-1329668	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1465481-1465515	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1072708-1072742	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1069410-1069444	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1045411-1045445	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1132591-1132625	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1160214-1160248	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1044675-1044709	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1132591-1132625	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1160214-1160248	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1132591-1132625	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1044698-1044732	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1132595-1132629	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1160214-1160248	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1160214-1160248	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1160214-1160248	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1044698-1044732	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1044698-1044732	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1132590-1132624	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1044698-1044732	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1044698-1044732	1	0.971
NC_003296_1	1.1\|1154160\|35\|NC_003296\|PILER-CR	1154160-1154194	35	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1160215-1160249	1	0.971
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1044736-1044781	1	0.978
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1044759-1044804	1	0.978
NC_003296_1	1.2\|1154232\|46\|NC_003296\|PILER-CR	1154232-1154277	46	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1044759-1044804	1	0.978

1. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
***********************************

2. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
***********************************

3. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
***********************************

4. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
***********************************

5. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcggtatg	Protospacer
***********************************

6. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

7. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

8. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

9. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

10. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

11. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

12. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

13. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

14. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

15. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

16. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

17. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

18. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

19. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

20. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

21. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

22. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

23. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

24. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

25. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

26. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

27. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

28. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

29. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

30. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

31. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

32. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

33. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

34. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

35. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
**********************************************

36. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

37. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

38. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

39. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

40. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

41. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

42. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

43. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

44. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

45. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

46. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

47. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

48. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

49. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

50. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

51. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

52. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

53. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

54. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

55. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

56. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

57. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

58. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

59. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

60. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

61. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

62. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

63. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

64. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

65. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

66. spacer 1.1|1154160|35|NC_003296|PILER-CR matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.971

ccacgctccgcgtcaccggcaatcagatcggtatg	CRISPR spacer
ccacgctccgcgtcaccggcaatcagatcgctatg	Protospacer
****************************** ****

67. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

68. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

69. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

70. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

71. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

72. spacer 1.2|1154232|46|NC_003296|PILER-CR matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 1, identity: 0.978

tcgcagcctgaccaagctcaatatcagccagaatgacatccggtcc	CRISPR spacer
tcgcagtctgaccaagctcaatatcagccagaatgacatccggtcc	Protospacer
******.***************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

562933 : 626294

Escherichia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011000214.1\|562933_563977_+\|transposase	IS21-like element ISRso6 family transposase	A0A2L1IVA1	Escherichia_phage	2.9e-77	45.1
WP_011000215.1\|563973_564819_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.1e-77	57.5
WP_011003764.1\|565488_566895_-	RHS repeat protein	NA	NA	NA	NA
WP_011003765.1\|566936_569582_-	RHS repeat protein	NA	NA	NA	NA
WP_119918820.1\|569807_571811_-	RHS repeat protein	NA	NA	NA	NA
WP_011003768.1\|572492_574256_-	RHS repeat protein	NA	NA	NA	NA
WP_080511098.1\|574685_576515_-	RHS repeat protein	NA	NA	NA	NA
WP_086004966.1\|577527_578738_-\|transposase	IS3-like element ISRso10 family transposase	A0A1B0Z042	Pseudomonas_phage	8.9e-102	65.5
WP_011003770.1\|579338_579833_-	hypothetical protein	NA	NA	NA	NA
WP_011003771.1\|579822_580539_-	hypothetical protein	NA	NA	NA	NA
WP_011001433.1\|581897_583232_+\|transposase	IS4-like element ISRso13 family transposase	NA	NA	NA	NA
WP_011003773.1\|583153_583669_-	hypothetical protein	NA	NA	NA	NA
WP_011003774.1\|583670_584864_-	type II secretion system F family protein	NA	NA	NA	NA
WP_119918784.1\|584867_585275_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_011003776.1\|585305_585770_-	type II secretion system protein	NA	NA	NA	NA
WP_011003777.1\|585756_586143_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_011003778.1\|586136_586613_-	type II secretion system protein	NA	NA	NA	NA
WP_011003779.1\|586609_587098_-	hypothetical protein	NA	NA	NA	NA
WP_043876929.1\|587099_587675_-	hypothetical protein	NA	NA	NA	NA
WP_011003443.1\|589926_591258_-\|transposase	IS701-like element ISRso17 family transposase	NA	NA	NA	NA
WP_011003782.1\|591919_596026_+	discoidin domain-containing protein	NA	NA	NA	NA
WP_155740427.1\|598433_598724_+	hypothetical protein	NA	NA	NA	NA
WP_011000219.1\|598844_600095_+\|transposase	IS256-like element ISRso7 family transposase	A0A218MNI5	uncultured_virus	4.8e-42	42.8
WP_011003784.1\|600676_601426_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-27	35.9
WP_011003785.1\|601422_602211_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_011003786.1\|602235_603003_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011003787.1\|603265_603703_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_011003788.1\|603841_604891_+	ornithine cyclodeaminase	A0A1V0SL93	Klosneuvirus	1.8e-98	52.1
WP_011003789.1\|604887_605847_+	hypothetical protein	NA	NA	NA	NA
WP_011003790.1\|605891_606509_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_011003791.1\|606881_607328_-	DUF3005 domain-containing protein	NA	NA	NA	NA
WP_011003792.1\|608099_609632_+	M20 family peptidase	NA	NA	NA	NA
WP_011003793.1\|609750_611148_-	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_011003794.1\|611144_611819_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	8.0e-36	36.5
WP_011003795.1\|612088_612394_+	hypothetical protein	NA	NA	NA	NA
WP_011003796.1\|612399_613725_+	TolC family protein	NA	NA	NA	NA
WP_011003797.1\|613751_614966_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011003798.1\|614976_618171_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_011003799.1\|618177_618612_-	HIT family protein	NA	NA	NA	NA
WP_011003801.1\|619076_620300_-	DUF2087 domain-containing protein	NA	NA	NA	NA
WP_019719262.1\|620307_620736_-	hypothetical protein	NA	NA	NA	NA
WP_011003803.1\|621009_621891_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011003804.1\|621890_623090_-	MFS transporter	NA	NA	NA	NA
WP_011003805.1\|623089_624280_-	hypothetical protein	NA	NA	NA	NA
WP_011003806.1\|624380_624614_-	hypothetical protein	NA	NA	NA	NA
WP_086004967.1\|625174_626294_+\|transposase	IS3-like element ISRso12 family transposase	S5WIU1	Leptospira_phage	1.9e-50	41.4

DBSCAN-SWA_2

687803 : 723390

uncultured_Caudovirales_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086004959.1\|687803_688983_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-61	42.9
WP_119918788.1\|689356_689629_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011003850.1\|689890_690751_+	hypothetical protein	NA	NA	NA	NA
WP_011003851.1\|690841_692614_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_052286333.1\|693285_694653_+	amidohydrolase family protein	NA	NA	NA	NA
WP_011003853.1\|694945_696079_-	nickel/cobalt efflux transporter RcnA	NA	NA	NA	NA
WP_011003854.1\|696180_696453_+	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_011003855.1\|696585_697557_+	chromate resistance protein	NA	NA	NA	NA
WP_011003856.1\|697575_698781_+	chromate transporter	NA	NA	NA	NA
WP_043876826.1\|698834_699341_+	chromate resistance protein	NA	NA	NA	NA
WP_086004986.1\|699423_700564_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.6e-50	43.4
WP_080511102.1\|700724_701105_+	hypothetical protein	NA	NA	NA	NA
WP_155740431.1\|701322_703251_+	hypothetical protein	NA	NA	NA	NA
WP_119918822.1\|705196_705637_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_011003864.1\|705517_706075_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_011003865.1\|706064_707108_-	transporter	NA	NA	NA	NA
WP_071015387.1\|707198_707576_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_086004987.1\|707964_709174_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	4.3e-96	62.2
WP_119918790.1\|709240_709612_+	hypothetical protein	NA	NA	NA	NA
WP_011003870.1\|709960_710533_-	hypothetical protein	NA	NA	NA	NA
WP_011003871.1\|710924_711593_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	6.9e-64	59.5
WP_011003872.1\|711725_711974_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	8.0e-34	84.8
WP_028861544.1\|711970_712336_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	2.0e-28	74.7
WP_011003873.1\|712251_712908_-	type III secretion system effector protein	NA	NA	NA	NA
WP_011003875.1\|713734_713923_-	hypothetical protein	NA	NA	NA	NA
WP_043876937.1\|714020_714371_-	hypothetical protein	NA	NA	NA	NA
WP_011003879.1\|715788_716010_-	hypothetical protein	NA	NA	NA	NA
WP_011003880.1\|716107_716644_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	9.1e-75	82.6
WP_086004752.1\|717007_717809_+\|transposase	IS5-like element IS1421 family transposase	NA	NA	NA	NA
WP_080511103.1\|718314_719949_+	glycoside hydrolase family 6 protein	NA	NA	NA	NA
WP_011000796.1\|720129_721452_-\|transposase	IS5-like element ISRso9 family transposase	K4ICS3	Acidithiobacillus_phage	1.2e-54	48.6
WP_071615493.1\|722200_722533_-	hypothetical protein	NA	NA	NA	NA
WP_011003885.1\|722583_723054_-	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_011003886.1\|723258_723390_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1648985 : 1682957

Heterosigma_akashiwo_virus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011001433.1\|1648985_1650320_-\|transposase	IS4-like element ISRso13 family transposase	NA	NA	NA	NA
WP_011003443.1\|1650529_1651861_-\|transposase	IS701-like element ISRso17 family transposase	NA	NA	NA	NA
WP_011004581.1\|1651942_1652767_-\|transposase	IS5-like element ISRso1 family transposase	NA	NA	NA	NA
WP_086004991.1\|1656832_1657177_+\|transposase	transposase	NA	NA	NA	NA
WP_011004585.1\|1657307_1658885_+	polyamine aminopropyltransferase	A0A1C9C533	Heterosigma_akashiwo_virus	5.5e-11	27.0
WP_011004586.1\|1658898_1660521_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011004587.1\|1660556_1661273_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_011004588.1\|1661402_1661765_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_011004589.1\|1661803_1662493_+	glutathione S-transferase	NA	NA	NA	NA
WP_080511118.1\|1662608_1662797_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_011004590.1\|1662926_1664303_-	hypothetical protein	NA	NA	NA	NA
WP_080511119.1\|1665021_1665231_+	hypothetical protein	NA	NA	NA	NA
WP_011004591.1\|1665568_1666735_-	hypothetical protein	NA	NA	NA	NA
WP_011004592.1\|1666767_1667037_-	MoaD/ThiS family protein	NA	NA	NA	NA
WP_043876877.1\|1667271_1668231_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011004594.1\|1668275_1668713_-	RidA family protein	NA	NA	NA	NA
WP_043876878.1\|1668754_1669795_-	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_011004596.1\|1669898_1670393_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_011004597.1\|1670839_1671175_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011004598.1\|1671167_1671650_+	SRPBCC family protein	NA	NA	NA	NA
WP_011004599.1\|1671757_1672375_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011004600.1\|1672440_1673061_+	LysE family translocator	NA	NA	NA	NA
WP_011004601.1\|1673188_1673566_-	RidA family protein	NA	NA	NA	NA
WP_011004603.1\|1674089_1675055_+	lipoprotein transmembrane	NA	NA	NA	NA
WP_011004604.1\|1675125_1675479_+	hypothetical protein	NA	NA	NA	NA
WP_011004605.1\|1675874_1676795_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011004606.1\|1676986_1678051_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_043876977.1\|1678158_1679487_+	MFS transporter	NA	NA	NA	NA
WP_011003443.1\|1680719_1682051_-\|transposase	IS701-like element ISRso17 family transposase	NA	NA	NA	NA
WP_011004581.1\|1682132_1682957_-\|transposase	IS5-like element ISRso1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003295

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_003296

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection