CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012660	Pseudomonas fluorescens SBW25, complete genome	2 crisprs	DEDDh,DinG,csa3,cas3,RT,WYL,PD-DExK	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_012660_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012660_1

739574-739671

Orphan

Consensus_repeat	Method
CCAGGCGACTCAGTTCTAACCAAGGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012660_1

>merge|NC_012660|1|739574-739671|CRISPRCasFinder
CCAGGCGACTCAGTTCTAACCAAGGAGAACACAGTGCTCCAGGAGATGGGGCGGCGAAGCCGCCCTAAGACCAGGCGACTCAATTCTAACCAAGGAGA

>NC_012660|1|1|739574-739671|CRISPRCasFinder
CCAGGCGACTCAGTTCTAACCAAGGAGA	ACACAGTGCTCCAGGAGATGGGGCGGCGAAGCCGCCCTAAGA
CCAGGCGACTCAATTCTAACCAAGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012660.1\|WP_012722028.1\|738863_739055_+\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NC_012660.1\|WP_012722035.1\|747128_748028_+\|serine-protein-kinase-RIO	unknown	unknown	gnl\|CDD\|224632
NC_012660.1\|WP_043204732.1\|739750_741433_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_012660.1\|WP_012722027.1\|737579_738521_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
NC_012660.1\|WP_012722020.1\|731079_731349_-\|DUF3613-domain-containing-protein	unknown	unknown	gnl\|CDD\|289069
NC_012660.1\|WP_012722036.1\|748173_748575_-\|Cu(I)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133383
NC_012660.1\|WP_012722038.1\|750839_751220_-\|hypothetical-protein	unknown	unknown	unknown
NC_012660.1\|WP_012722033.1\|744258_745602_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|236207
NC_012660.1\|WP_012722029.1\|739113_739530_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NC_012660.1\|WP_012722037.1\|748571_750773_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_012660.1\|WP_012722026.1\|736342_737560_-\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NC_012660.1\|WP_012722032.1\|743407_744256_-\|acyl-dehydratase	unknown	unknown	gnl\|CDD\|366711
NC_012660.1\|WP_012722024.1\|733884_735156_-\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NC_012660.1\|WP_012722025.1\|735152_736346_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374910
NC_012660.1\|WP_043204728.1\|732103_732991_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_012660.1\|WP_012722031.1\|741619_743104_-\|collagen-like-triple-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|374271
NC_012660.1\|WP_043204730.1\|732992_733874_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_012660.1\|WP_012722039.1\|751367_751565_+\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NC_012660.1\|WP_012722034.1\|745716_746994_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236440
NC_012660.1\|WP_043204726.1\|731352_732093_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343

Protein	Function_ID	Function_description	E-value
NC_012660.1\|WP_012722028.1\|738863_739055_+\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	5.18757e-09
NC_012660.1\|WP_012722035.1\|747128_748028_+\|serine-protein-kinase-RIO	gnl\|CDD\|224632	COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning].	4.05255e-78
NC_012660.1\|WP_043204732.1\|739750_741433_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	9.0966e-68
NC_012660.1\|WP_012722027.1\|737579_738521_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	3.03718e-44
NC_012660.1\|WP_012722020.1\|731079_731349_-\|DUF3613-domain-containing-protein	gnl\|CDD\|289069	pfam12266, DUF3613, Protein of unknown function (DUF3613). This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.	1.14475e-13
NC_012660.1\|WP_012722036.1\|748173_748575_-\|Cu(I)-responsive-transcriptional-regulator	gnl\|CDD\|133383	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	6.6345e-76
NC_012660.1\|WP_012722039.1\|751367_751565_+\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	1.21146e-12
NC_012660.1\|WP_012722033.1\|744258_745602_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|236207	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	0
NC_012660.1\|WP_012722029.1\|739113_739530_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	6.88908e-22
NC_012660.1\|WP_012722037.1\|748571_750773_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_012660.1\|WP_012722026.1\|736342_737560_-\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	2.26846e-94
NC_012660.1\|WP_012722032.1\|743407_744256_-\|acyl-dehydratase	gnl\|CDD\|366711	pfam01575, MaoC_dehydratas, MaoC like domain. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydrogenase-epimerase, fatty acid synthase beta subunit. Several bacterial proteins that are composed solely of this domain have (R)-specific enoyl-CoA hydratase activity. This domain is also present in the NodN nodulation protein N.	2.3272e-15
NC_012660.1\|WP_012722024.1\|733884_735156_-\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	4.79321e-157
NC_012660.1\|WP_012722025.1\|735152_736346_-\|hypothetical-protein	gnl\|CDD\|374910	pfam16968, TadZ_N, Pilus assembly protein TadZ N-terminal. TadZ_N is the N-terminal region of the Flp pilus assembly protein TadZ, which carries an AAA, ATPase domain immediately downstream, AAA_31, pfam13614. The domain is an example of a signal-transduction-response receiver. It is localized to the cytoplasmic side of the inner bacterial cell-membrane, contacting also with both tadA and RcpC.	1.93452e-43
NC_012660.1\|WP_043204728.1\|732103_732991_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	2.08583e-16
NC_012660.1\|WP_012722031.1\|741619_743104_-\|collagen-like-triple-helix-repeat-containing-protein	gnl\|CDD\|374271	pfam15984, Collagen_mid, Bacterial collagen, middle region. Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.	1.13324e-14
NC_012660.1\|WP_043204730.1\|732992_733874_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.10196e-51
NC_012660.1\|WP_012722034.1\|745716_746994_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236440	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase.	0
NC_012660.1\|WP_043204726.1\|731352_732093_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	2.63816e-17

>NC_012660.1|WP_012722029.1|739113_739530_+|response-regulator
MSVYPPSRQQILLVDDEEDALIELAESLEHEGFVCFTATSVTFALQELTLHPDIALVITDLRMPEESGISLIKRLREHTSRSHLPVIVMSGHAEMDDVSDMLRLQVLDLFRKPIYLVRLIDTLNSLFPLSTPTLKRTL
>NC_012660.1|WP_012722028.1|738863_739055_+|Flp-family-type-IVb-pilin
MFLDLMLKLYVQTQLFFQRKEGASGIEYAIIVAMVALVIVGAGSGLGTKIKSIFDSVATKMTT
>NC_012660.1|WP_012722027.1|737579_738521_-|Flp-pilus-assembly-protein-CpaB
MNSRISMVLAGLLLIGALIAGYWGLVLSRAPEPVAVPAAPVVSVEKTIAAAEDQTRQPVVVLVHDVPAYRALTAADLVVERLRTVPVGSLTQLDQAIGRMPLRALGAGTWLTEDSFTGGGPLARMIRPDERALAVAVDEVIGAAGQLTPGDYVDVLLFLRQDASNAEQSAQIVLPAMRLLSVGDQMGLANDGLPAVPPPVTVEERAQAAQRRAAARTVVLAVPEPLLSRLMLAAQAGTLRLAVRSAEEHLLSRYWAGESEAPQKMESANRDLYQFTQLALTGPPKRIAPAGGEPSVRRGIEVIRGAQGAPQTP
>NC_012660.1|WP_012722026.1|736342_737560_-|type-II-and-III-secretion-system-protein-family-protein
MSQRYAPLFMHMAWALMLSSLPVGMALAAPGNCSALGQLPAVVEVGEGLQQELQSPVAITRLAIGDPKIADVRVNGDRHFLLTGVASGATSLMVWTACASTPRQSMVFVKGRATSALTSLSLSPSEDPLLPSQVQTDIRFVEVSRTKLKEASTRLLGTGKNFFLGSPNLLSPSEGVFKLPVSTDSFNVGFGGGRVSAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKEFGIRLTLTPTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGESFVISGLISTNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQLPSLPGEKLRSYDPNWFRLFFLENGNFDRRSGLSQ
>NC_012660.1|WP_012722025.1|735152_736346_-|hypothetical-protein
MSDSLSQTFLAITRNATDLEWLQGALAPLGQVVSVGTGSLDELLALVDVTFASLVFVGLDRENVVTQSALIEGALEAKPMLAVVALGDGMDNQLVLNAMRAGARDFVAYGSRSSEVAGLVRRLSKRLPTVAHNAQLGGLTVLFGTQSNADGAMLATHLALVVQKSGQQTLLLDLGLPRSDSLALLGLESTFNFGDALRHLRRLDTTLINSAFTTALDGLRILAYATGDEPLKLTSAAELFMLLSALRQHFQHIVVNITGQPDSEALRTFVSHCDKLLWCTDQNVLDCRRNLAVLSRWRDKGMKLDHAKLVVDRYIKACAPDTEALEKSFGLECVAVLPLSAELRLNVKNQGQTLFVLAPREPLTQAVRALGERLAKRSEGLAKPSMRWFERILGSGR
>NC_012660.1|WP_012722024.1|733884_735156_-|CpaF-family-protein
MNGEKLFGGPARSAGGNSDHDGLKLVLHRYIIDAIEESGKNLLEGTRQSLAQFVIDKVSEYITRMRLAISRYEMERLAEEIVDELTGFGPLEVLLRDPSVTEILVNGPHRVFIERDGLLHQSDLRFIDDHHVERVMQRILAPLGRRLDESSPMVDARLPDGSRVNAIIPPIALDGPCLSIRKFRKDMLKSSDLVAMQTIDQSIFEFFQEAVGKRCNILISGGTGTGKTTLLNILSQLINPHERLVTIEDVAELQLGHPHVVRLETRPPNAEGHGEVRSSDLIRNALRMRPDRIILGEIRGVEVLDVMTAMNTGHDGSMSTVHANNAQDALLRLETLVGLTGRVIAEKTLRQMICAALDVIIQLTRMPDGRRCVSEVVEVVGVRDDVYVTNTLFRLDRRTGFGFLREALNPAGDKLRRESALQS
>NC_012660.1|WP_043204730.1|732992_733874_-|type-II-secretion-system-F-family-protein
MTGPVLLLICLLLIGLSFWQFHHGLRKAQTARVLERLGNGQPEAQETTTTWTGLERMFQRAGLGKPTDRLGLWASAWVIGALLGWLLADGLGLIAMIVGPPLALRVFIAWRYQQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIENPLRDAMGRVQRNVRMGVSLPDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIKMIREREQGARQLKAMTGETRMTAYVLGGLPVLIVGYFLVVNPGYLMNMWHDGTGRIMLFGALAMDLGGTFIMWRMLRSV
>NC_012660.1|WP_043204728.1|732103_732991_-|type-II-secretion-system-F-family-protein
MALLACALLLLAAAVLVGGQLLEHRRRERRVAERLQGKMVSDNRLGTLIRQLGASSLAQRSVSLDNETQALLNRVGWRKSSQRSLFAAFQIGTPIVLLGLTLLGQQLLFPHADPAWIAPMFALGIGYLLPKRVLAAAAKHRQQAIAKEISTFIPLLRILFESGMAVEQSLRVLGNEAQRLLPHLTHELRLILARVDSGLELGEELGKTVHVLEVDEFTDTCIILQQLIQQGGGAMKSLLALKQLLDDRRLTRLQEYISKMSAKMSVVMMVFLFPALLIVLGGPAFIGIARALSHF
>NC_012660.1|WP_043204726.1|731352_732093_-|tetratricopeptide-repeat-protein
MKALIAGLALLMLGGCATNGQSPWAALTSSNSCTKPSSDQELALNLSDDLANEGKLHASLANLQSLPEAFPQVRQRKARNYRLLGRSEAEPLYRSLLGTCMNAEGEHGLGQLAAARGDNGQAMAHMQRAAQLAPTDEKIRNDLGVVYLNQLRMEDARFEFMTAIELKQSDPLAAVNLVTLLIYQDNWGQAAKVASQLGLSPEQVTDAQARAEKLKGPSPSPSPSPSAPARKIAVVSDAIRWLSSEE
>NC_012660.1|WP_012722020.1|731079_731349_-|DUF3613-domain-containing-protein
MKVHYLVGLALLPLSALAIEPGPSSPQQAETENWMALQINGRAASPTPQRTTPAEREQALQRWLDSHKHPIPEFFESPSGGSSKGGNSQ
>NC_012660.1|WP_043204732.1|739750_741433_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MRALTPLLLLTLSAYAHADTLPSFLNSNDTIRNLPVPNLPADAYRPAATPTQVPVPAATAEQPLLMDTKVTIRKLQIDGGTVYPLKEVAQVFEPLIGHETNLAQLIEATRSITRRYQEDGYLLSYAFLPEQRFEGGLVHVVLVEGYIRDYQLQGDIGSVSSYVDKLAEKLKAERPLTRKTFERYTTLMSAIPGVTVQAQVPPPSTTDGGTHMQISASRKPFTTSMSLNEASRGGTQALLTGTSNSWTSMGEQLSVSGLFPPGEDKEHYYRASYSQFINAEGTQLALSGERYRADPSTRLQLGDGLELKPHQQIDRYSIGVSHPFIASPSESLSLGTRLYAVDQTNRYTLEGFPQRFELQTNLRALAFEGDWRKADTTQLRIISGGVYQGINGMGAKTHTDFGGLKPDLDFFRLRLSGVQSNKLFDNWQGVLSGALYWSNDNLPDSERATFGGQSFGRGYPDDQGTGDKGWGAAYEVNYSYNRAGDWVRILQPYVVLDRAKTWFNDLPVKGNDMSSAAVGLRFGDAKYYNVALEVAKPMSDVALDSFDRRPRYSLSFSYQL
>NC_012660.1|WP_012722031.1|741619_743104_-|collagen-like-triple-helix-repeat-containing-protein
MNTHVVFWKTSTALALAVTLALGGCSSGGGGHHSGGSSDAGAGGGTGGGGTDPGTNPGGTASPLVTATVVDTAGNTVTRLSRTVRSLGTTLGSLPIVGETAGDLVTAAGNAVDSIGNGLSDGLGSLGTDSNALGKTVAGVANGVSDLGDGVTVTGANVATLLGKVPVVSGASPVVGNVVGKVGNAVTMLGDTLSTASTTGPLGSVTHTVGAKVLVPVVSLVENTTGKVGTATGLDSPVGGLLKKVGDTVDGLGDKVADAGGTGNPVTDAVGNVLNGVGTAVGKASGYVDRDADSSGGGNGGGTGGGLGKLGLAELIGGVIAGAGSGLDAGSTNGVISAAGVTGVKAGTTVAALGGGTPSTKTSIPVAGLTGPIGNALNPVTSGVQSLTQNIGGATGLGAPANGLVTRVGGAVSNLGGNISGTNANPVTNALGGTVTAVGGTVASIGGLVTGGTNTGGGLLAGGLNVGAGASAGAGASASGGLLGGLLGGLGGKK
>NC_012660.1|WP_012722032.1|743407_744256_-|acyl-dehydratase
MQWKTLGTTPFLPPLYWRAALKRKITGSTLPEHGLRCRVSINPKQVAAYRKVCGFADSPLLPATYPHVLAFGLQMQLLTDKSFPFPLLGLIHLSNRIRVHRPLGGVSELSVGVHTQNLKPHPKGATFDLVTTVEDSLGLLWEAESRMLCRGVKLEGEAEDIAQPSPAQVSELSRRKAPADIGRRYARVSGDYNPIHLSALTAKLFGFPQAIAHGLWNKAHTLAALGEHLPAANMEIHVEFRKPVRLPSEVTLLASAAGSSGALWLKGAGEIEHMVGKWQPIA
>NC_012660.1|WP_012722033.1|744258_745602_-|3-oxoacyl-ACP-reductase
MSDRYIDFANSSLGHRLVAAIGLPSPVRLERWQAGRLRPVEGALLLGGGALATQVQAFANRLTDAIYTYGAETSTWIPGHGPTLKAVVFDASELQHTDQLKQLREFFQPLLKNLDNSAHLVILGRAPESLSDPFAASAQRALEGFSRSLAKELRNGDVLQLLYVGDGAEDQLEGALRFFLSPKSAYISGQVIRLEACATPVEDWTRPLAGRKALVTGAARGIGASIAETLARDGADVILLDVSQAKADLEALAARLGARTVTLDICAEDAARQLIEHLPDGLDILVHNAGITRDKTLANMTPEYWDAVLAVNLNAPQVLTQALLDSGTLHDNARVVLLASISGIAGNRGQTNYAASKAGLIGLAQAWAPLLKERGITINAVAPGFIETQMTAHIPFALREAGRRMSSLGQGGLPQDVAEAVAWLGQPGSGAVSGQALRVCGQSLLGA
>NC_012660.1|WP_012722034.1|745716_746994_+|acetyl-CoA-C-acetyltransferase
MTQLRRVAIIGGNRIPFARSNGPYATASNQAMLTAALEGLIERYNLHGLRMGEVAAGAVLKHSRDFNLTRECVLGSRLSPQTPAYDIQQACGTGLEAALLVANKIALGQIECGIAGGVDTTSDAPIGVNEGLRKLLLHANRSKSMADKLKLLLQLRPHHLKPELPRNGEPRTGLSMGQHCELMAQTWQIPRAEQDQLALESHQKMAAAYAEGWHNDLLTPFLGLTRDNNLRPDLTLEKLAALKPAFERSEKGTLTAGNSTPLTDGASLVLLGSEAWAQARGLPILAYLRDGEAAAVDFVNGAEGLLMAPVYAVPRLLARNGLTLQDFDYYEIHEAFAAQVLCTLKAWEDADYCKTRLGLDAPLGSIDRSRLNVKGSSLAAGHPFAATGGRIVANLAKLLDAAGKGRGLISICAAGGQGVTAIIER
>NC_012660.1|WP_012722035.1|747128_748028_+|serine-protein-kinase-RIO
MKTPKRIEPLIEDGLVDEVLRPLMSGKEAAVYVVRCGNELRCAKVYKEANKRSFRQASEYQEGRKVRNSRQARAMAKGSKFGKKETEDAWQNAEVAALFRLAGAGVRVPKPYDFLEGVLLMELVADEYGDAAPRLNDVTLEPDQAREYHAFLISQIVLMLCTGLVHGDLSEFNVLLTPTGPVIIDLPQAVDAAGNNHAFNMLERDVGNMASYFGRFAPELKATKYAKEMWALYEAGTLHPASVLTGEFDEPEELADVGGVIREIEAARLDEERRQAIRAADDAPPSKVPDEPPPPPWMQ
>NC_012660.1|WP_012722036.1|748173_748575_-|Cu(I)-responsive-transcriptional-regulator
MNIGQAARQSGLSAKMIRYYESIGLLKAAHRTDSGYRVYGSDDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADVKALARQHIEALNQKILELGQLRDTLQDLVEHCQGDDRPDCPILKELASGSCCA
>NC_012660.1|WP_012722037.1|748571_750773_-|copper-translocating-P-type-ATPase
MNGSTTFDLPISGMTCASCAGRVERALGKVPGVQSVSVNLANERAHVEVLGQMDPGVLIAAVDKAGYTASLPQSESTTDANQAQRLHHERWALLLAILLALPLVLPMLVEPFGLHWMLPAWAQFALATPVQFIFGARFYIAAWKAVRAGAGNMDLLVAIGTSAGYGLSIYEWLTAHPGMAPHLYFEASAVVIALVLLGKYLESRAKRQTASAIRALEALRPERAIRVLDGREEDVAINALKLNDLVLVKPGERFPVDGEVVEGQSHADEALISGESLPVPKQPGDNVTGGAINGEGRLLVRTLALGAESVLARIIRLVEDAQSAKAPIQKLVDRVSQVFVPTVLVLALVTLVGWWLYGAPLETAIINAVAVLVIACPCALGLATPTAIMAGTGVAARHGILIKDAEALERAHAVSAVVFDKTGTLTSGTPRIAHLAAVDGNEALLLQQAGALQRGSEHPLAKAVLDACNEKGLTVADVTASQSLTGRGIAGTLDGRPLALGNRRLLEESGLSAGDLADSAKSWEAEGRTLSWLIEQGAQPRVLGLFAFGDTLKPGALEAVEQLKAQHISSHLLTGDNRGSARVVAEALGIDDVHAEVLPADKAATVVALKKTGVVAMVGDGINDAPALAAADIGIAMGGGTDVAMHAAGITLMRGDPRLVPAALEISRKTYAKIRQNLFWAFVYNLIGIPLAAFGLLNPVLAGAAMALSSVSVVSNALLLKTWKPKNLEDQRP
>NC_012660.1|WP_012722038.1|750839_751220_-|hypothetical-protein
MRWSFFALLGLMSLSAAAPQAIAAEDYAVLIISRERLEVPTNCEIGLYIQDQLAGRLFQEQSTSFNLPAGDVSLRLKLLPGQTPGCLPGLLAPPAQNITLKAGDVRKLRIAQGPDGMYLKPAALEY
>NC_012660.1|WP_012722039.1|751367_751565_+|heavy-metal-associated-domain-containing-protein
MQVFSVEGMTCGHCVRAVTQAVQSQDPAASVKVDLAAKEVGVDSRLSAEQVIAAITEEGYSAKLA

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Crispr_ID: NC_012660_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012660_2

4081583-4081729

Orphan

Consensus_repeat	Method
CTCCCCTGATGCGCATTTGCTCCTGTCTGGCGCAGGCCAGGTACAGACGCGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012660_2

>merge|NC_012660|2|4081583-4081729|CRISPRCasFinder
CTCCCCTGATGCGCATTTGCTCCTGTCTGGCGCAGGCCAGGTACAGACGCGTTTTGACCCTGTTACCCCAACCCCTGCTCACCACAAAAAGCGCTCCCCTGATGTGCATTTGCTCCTGTCTGGCGCAGGCCAGGTACAGACGCGTTT

>NC_012660|2|2|4081583-4081729|CRISPRCasFinder
CTCCCCTGATGCGCATTTGCTCCTGTCTGGCGCAGGCCAGGTACAGACGCGTTT	TGACCCTGTTACCCCAACCCCTGCTCACCACAAAAAGCG
CTCCCCTGATGTGCATTTGCTCCTGTCTGGCGCAGGCCAGGTACAGACGCGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_012660.1\|WP_012724830.1\|4078147_4079053_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_012660.1\|WP_012724832.1\|4079878_4081462_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238793
NC_012660.1\|WP_012724842.1\|4091565_4094079_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NC_012660.1\|WP_012724831.1\|4079270_4079882_+\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|227840
NC_012660.1\|WP_012724827.1\|4075008_4075632_-\|hypothetical-protein	unknown	unknown	unknown
NC_012660.1\|WP_012724825.1\|4073759_4074200_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NC_012660.1\|WP_012724826.1\|4074724_4075057_+\|hypothetical-protein	unknown	unknown	unknown
NC_012660.1\|WP_012724839.1\|4088355_4088802_-\|protein-TolR	unknown	unknown	gnl\|CDD\|274306
NC_012660.1\|WP_012724840.1\|4088817_4089510_-\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NC_012660.1\|WP_012724835.1\|4084651_4085335_+\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239268
NC_012660.1\|WP_043205507.1\|4089557_4091423_-\|phytase	unknown	unknown	gnl\|CDD\|226698
NC_012660.1\|WP_012724824.1\|4071356_4073579_-\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|183173
NC_012660.1\|WP_012724838.1\|4087585_4088359_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NC_012660.1\|WP_043205503.1\|4074518_4074728_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185312
NC_012660.1\|WP_012724834.1\|4083290_4084655_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NC_012660.1\|WP_012724828.1\|4075919_4077002_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|238527
NC_012660.1\|WP_012724833.1\|4082303_4083278_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270276
NC_012660.1\|WP_012724829.1\|4077245_4078040_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|235916
NC_012660.1\|WP_012724837.1\|4086540_4087485_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|240657
NC_012660.1\|WP_012724836.1\|4085365_4086544_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871

Protein	Function_ID	Function_description	E-value
NC_012660.1\|WP_012724830.1\|4078147_4079053_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.22458e-47
NC_012660.1\|WP_012724832.1\|4079878_4081462_+\|sulfurtransferase	gnl\|CDD\|238793	cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.	1.28104e-68
NC_012660.1\|WP_012724831.1\|4079270_4079882_+\|cysteine-dioxygenase	gnl\|CDD\|227840	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only].	1.06596e-60
NC_012660.1\|WP_012724839.1\|4088355_4088802_-\|protein-TolR	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	2.73452e-48
NC_012660.1\|WP_012724825.1\|4073759_4074200_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.5057e-53
NC_012660.1\|WP_012724842.1\|4091565_4094079_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NC_012660.1\|WP_012724840.1\|4088817_4089510_-\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.29694e-81
NC_012660.1\|WP_012724835.1\|4084651_4085335_+\|AhpC/TSA-family-protein	gnl\|CDD\|239268	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.	2.17598e-38
NC_012660.1\|WP_043205507.1\|4089557_4091423_-\|phytase	gnl\|CDD\|226698	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism].	3.7678e-91
NC_012660.1\|WP_012724824.1\|4071356_4073579_-\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|183173	PRK11519, PRK11519, tyrosine-protein kinase Wzc.	0
NC_012660.1\|WP_012724838.1\|4087585_4088359_-\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	3.54553e-13
NC_012660.1\|WP_043205503.1\|4074518_4074728_+\|hypothetical-protein	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	7.94423e-10
NC_012660.1\|WP_012724834.1\|4083290_4084655_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NC_012660.1\|WP_012724828.1\|4075919_4077002_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|238527	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).	2.42557e-100
NC_012660.1\|WP_012724833.1\|4082303_4083278_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270276	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.50734e-97
NC_012660.1\|WP_012724829.1\|4077245_4078040_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|235916	PRK07044, PRK07044, aldolase II superfamily protein; Provisional.	6.70588e-153
NC_012660.1\|WP_012724837.1\|4086540_4087485_+\|dihydrofolate-reductase	gnl\|CDD\|240657	cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	4.93746e-170
NC_012660.1\|WP_012724836.1\|4085365_4086544_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.7009e-55

>NC_012660.1|WP_012724832.1|4079878_4081462_+|sulfurtransferase
MTTVSTRSFARIRQALLDHEEVALVDVREEAPFAESHPLFAANIPLSKLELEVYSRIPRRDTQVTVYDNGEGLAARAAERLVALGYTQVSVLEGGLDGWRKAGGELFIDVNVPSKAFGELVESERHTPSLAAEEVQALLDSQADVVVLDARRFDEYQTMSIPTGISVPGAELVLRARELAPDPATRIIVNCAGRTRSIIGTQSLINAGVANPVSALRNGTIGWTLAGQKLAHGQSRRFAPTSEAHRQAAAADARRVADKARVGRATLADLHAWQQEKTRTTYLFDVRTPEEFEAGHLPGARSTPGGQLVQETDHVASVRGARLVLADDDGVRANMSASWLAQLGWEVHVLDDLHAAHFSEKGAWVAPVPAPPQAELISPHTLAEWLKHGDTVVLDFTASANYVKRHIPGAWWVLRAQLSQALAKVPAAQRYVLTCGSSQLARLAVAEVEAITGNQVFLLQDGTAGWINVQLPLEEGETHLASPRIDRYRRPYEGTDNPKEAMQAYLDWEYGLVDQLARDGTHGFYVI
>NC_012660.1|WP_012724831.1|4079270_4079882_+|cysteine-dioxygenase
MTQARHPERLRAFIGALAELIDGNPREGDLLHRGGKLLAQLVSHDDWLPDEYAQPDPERYQQFLLHADSRQRFSIVSFVWGPGQSTPIHDHRVWGLIGMLRGAEFSQGFERAPDGRLVAEGKPIQLVPGQVEAVSPKVGDIHQVSNAHSDQVSISIHVYGANIGAVRRAVYQPDGSEKLFISGYSNAFLPNIWDLSKEKSPAL
>NC_012660.1|WP_012724830.1|4078147_4079053_-|LysR-family-transcriptional-regulator
MKIDDIDAFVEVIRCQSISHAAESLQLTQPAITRRVQNFEQALGVELFDRNTKPLKPTLIGTRVYEQCRLILREMDALRELVATDAPPTGLLRLGVPQTIGDVVLLDALKHLRTEYPELRAQVATGWGSQLVGKIERGELDAAAALFPAGKIFPDNIIGESIGKMELVVVCAKSQLPKKPCKLADVYQNGWILNPDGCGFRAGLQRTLSDQGLALRVNLETFGTELQLGLVADGLGLGLVPRPLLERSAHREQLAVMPLKDFKPVMDLWLIYPHFLGNLQGPVDAFGKWVAASLHKIKDAA
>NC_012660.1|WP_012724829.1|4077245_4078040_-|class-II-aldolase/adducin-family-protein
MSSVTSISSVSNNVRQRVTPEEWEVRVKLAAAYRLAALYKWTDHIYTHFSARVPGPEEHFLINAFGLLFDEISASNLVKVDLDGTIVDDPTGLGINYAGYVIHSAIHGARHDLQAVLHTHTRDGIAVSAQKDGLLPISQHSIGFSGRVAYHGYEGIALDLDERERLVADLGDKSVMILRNHGLLTAGVSVEHAFQQLQQLERACTIQVAAQAAGNAELIFPPKEVVEKVEQQAKAHSTGEGPGVARHWNALIRQLERSDTDYKN
>NC_012660.1|WP_012724828.1|4075919_4077002_+|LLM-class-flavin-dependent-oxidoreductase
MSIEFIGYIGGHHASEIHPRSGPTLQPDYVETVARAHEDAGFDRALVAFHSNSPDSTLIASHAASVTKKLQFLIAHRPGFTQPTLAARQFTTLDVFNGGRTAVHIITGGDDRELRADGSHIGKDERYARTDEYLSVVRQEWTSEQPFDFDGTYYQVEGAHSTVKSPQQPHIPLYFGGASKAAIEVAGKHADVYALWGETYEQVREIVTQVRAEAAKHGRTIRFSLSLRPILAETEALAWARADSILQQATALAEKNGFVRREPPNEGSRRLLAAAAQGSRLDKRLWTGIAGLLGAQGNSTSLVGTAEQVAEALVDYYDLGITTFLIRGFDPLNDAIDYGKRLIPLTRQLIAEREQAKQVA
>NC_012660.1|WP_012724827.1|4075008_4075632_-|hypothetical-protein
MMRAELAHYGGITVMIPAAIIIAVWLRYSNPWALRAWIITVGVSYSIVAFSKLLFKGWGLSFEPLDIAVLSGHAMNTTLMITVAASLIARQFNPRLGWPAAGVGLMASAWFSAYCVAPYIHPLNEALAGATLGAVAAMAFLWRIEPVDVKVSPAYIGAGLAALLVCAMAPKYNAELLLNRVAITLSGAERAHQEPSWRLEAAHSRAE
>NC_012660.1|WP_012724826.1|4074724_4075057_+|hypothetical-protein
MSLLDDVIRSYALRKLTGMFEGFAEPAVGTQYRRNTLAIGRWLEQLQGSSPQQITHTLFKQMIEARRRGDVQRFNAQTVLLELMVESNRALDLVTYSALLCAASSRQEGS
>NC_012660.1|WP_043205503.1|4074518_4074728_+|hypothetical-protein
MQVLYADNSLDSDESGSGLSMVFADWRFKLQVSDAASVCLCVESRGDSQFMQVKTAELLANISGTEERP
>NC_012660.1|WP_012724825.1|4073759_4074200_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MFNRILIVCVGNICRSPTAEKLLRNALASSAIEVSSAGLAALRDSPLEPTASLVLAEHGHAPGTHRARQLTSDAVSDADLVLVMEQRHIDEVLSLAPEARGKVFLLGKWQYNREIMDPYRQGKPAFVHAYALIEQATQAWAQRLVS
>NC_012660.1|WP_012724824.1|4071356_4073579_-|polysaccharide-biosynthesis-tyrosine-autokinase
MQSAPAIASHNGEETDLDFMLLLGTLLDHKWLIGGISIAFMALGAAYAVLTPPIYQATALVQVEPKKSDMLGFSDVGSLLGKESPTVTEVELIRSRITIGTAVDNLNLDLEVKPKRFPLIGDFMARRFKPAQAQAVASPWLGLSSYGWGGEELRFSQLHLPADLLGQALTLTASSGDSFTLSDQDDTVLLTGQVGRYYESDGIKLKVEVLQANPGAQFSVIRSPRLTSILRYQKLLDVAERGKESGIIGLALESTRPAAAIQVLNEVARIYVRQNIDRTSAEAAQSLAFLKDQLPQVRKDVEQAETALNKFQIRNKTIDISLEAKAILDQIVALDASISELKMQQAEIERKFTPQHPVYRALLTQLAELTARQNELAKKVESLPTTQQELLSLTRDLKVSTEIYTQLLNKYQELDVMRAGTVGNVRLIDTADVDLRNPIRPQKALIVVIATLLGAFVAIALVLFRKALNRGVSNPNELEKLGLPVYAAIPFSAIQKDMDQKLVRTNKPGATQLLALSNPTDLAIEGLRSLRTSLHFAMLEAGNNRLMISGPSPQVGKTFVSSNLAAVVAHSGQRVLLVDVDMRKGYLHKVFGIPAEDGLSDLLAKRCELGAVIHPTEVENLHVLARGRIPPNPSELLMHANFSEFLEHVSALYDLVILDTPPFLAVTDATIVGRQSGTNLIVARFELNSVREVELTMRRYQQNGIELKGAIFNGIEKRSSAKYGYGAYSYYHYEYTSDSV
>NC_012660.1|WP_012724833.1|4082303_4083278_+|ABC-transporter-substrate-binding-protein
MVLTTPFKRLLLGTALAFGLIGSAHAADLQSLRVANQKSTIKALLEVSGETKNVPYEIQWSEFPSASPLGEALNAGAVDIGALGDAPYVFALGAGASLKVVSIIHAEGRNTTALLVPKDSPIKTVADLKGKKIVTGRGSIGHYLAIKALATAGLTTKDVQFIFLLPSESRLVLDNGTVDAWATWDPYTTVVTSQSQARVLISGNKLLSNHLYLAATQKAIADKRPQLDDFVARVDRAYAWANTHPDEYAAAQAKITGLPLAVHVEVAKDTHLTPVAIDDSVISGLQATADTYQKEGLLTQHIDVSQGFDKSFNAKRAPLSQASR
>NC_012660.1|WP_012724834.1|4083290_4084655_+|LLM-class-flavin-dependent-oxidoreductase
MSKPHQAKPRHLKLGAMVHGVGHGWGEWRHPNAQPNASTSFGFYKQQTELAEAAKFDFVFIADSLHIHAKSSPHYLNRFEPLTILSALAAITTNIGLVATVTVSYTEPYQVARQFSSLDHISGGRAGWNVVTSWLSGTADNFSKAEHPPHAVRYRIAKEHVNTVQGLWDSWEDDAFTYNKQTGEFFAPSKLHALNHKGDFFSVKGPLNIARSRQGQPVIFQAGTSEDGRNFAAQNADAIFVHVDSIEEGLAYSQDLKRRAKGFGRDPQSLSILPGIRPIVGRDEAEVESRYQQAVDLVTVEDAIVALGRPFNDHDFSKYPLDAPFPELGDLGSNSQKGGSDRIKQLAKDEGLTLREVALHFSRPKRDFVGTPEQVADAIQAWFETGASDGFIINSVLPDGLQYFTEWVVPVLQQRGLFRSEYTGHTLRDNLGLDVPANRYSVAAEVEEKQEALA
>NC_012660.1|WP_012724835.1|4084651_4085335_+|AhpC/TSA-family-protein
MSESLNRQLADLHAERVATWAPEALQVNIDQRQRLVDEARPDDYVQVGDELAPFTLLTVEGGELNRDLLLADGPAVLIFFRFAGCPACNIALPYYERQLYPRLRELGVPLVAVSPQVPERLVEIKTRHTLQLQVASDPDNTLGRRLGILYSADEASRNAALAKGNHLGETTGTGTWELPQPTVVVIAGDGTVAFVEVSPDWLVRTEAEPVLQAVERLLGEQPVRIAI
>NC_012660.1|WP_012724836.1|4085365_4086544_+|acyl-CoA/acyl-ACP-dehydrogenase
MTSSSQPSLRSVEVANFEALLERLSTELASTAHLYDESGAFPHANFTLLHEHGLVALTVPKSLGGGGASLPQARKAISAIAKGEPSTALILVMQYLQHTRLQDSKTWPAHLRTQVANDAVRDGALINALRVEPDLGTPARGGLPATTAVRTAEGWRISGRKIYSTGSHGLSWFSVWARSDDADPLVGAWLVPKDSPGVSIIDTWDHLGMRATCSHEVVLDNVRVPLDHAVSVSPWSAPSPELDGEGFLWMSVLLSSVYDAVAQAARDWLVNWLEERQPSNLGAALSTLPRFQETVGHIDTLLFANRSLLDAAAEGHTPSANAAQLKYLVTHNAIRAVELAIEASGNPGLSRHSPLQRHYRDVLCSRVHTPQNDAVLQGVGKAVFAQRHKERP
>NC_012660.1|WP_012724837.1|4086540_4087485_+|dihydrofolate-reductase
MSQVMIASQLDEDYNDVIRQRLASIHPGAQVIGVPVGVPSDLPPQANILLLRPINVRGYTAPDTPPPGWPYGAQWVHLVSSGIDFYPQWLFNGPPVTTSRGSAADNLAEFALAAIFAASKHLPEIWVKDAQWQFTPLRPLKGTTLGILGFGAIGESLAQKALALGIKVVALRQSPTPFSTGVEAAKDIHDLFARADHLVVAAPLTESTRHIINRDVLGSAKPGLHLINIARGGLLDQEALLEALDNGQIGLASLDVTEPEPLPDGHPLYTHPRVRLSPHTSAISTNSRNEIADTFLANLERYIDGRTLENLANS
>NC_012660.1|WP_012724838.1|4087585_4088359_-|energy-transducer-TonB
MTAMIMHSPTLTMAHGQPSGFWRNSFAASLAVALHVGVLAALMLGGSTEKTPVQAPRVMHTQLVMMPPAPVPVPVPAPAPEPVALTPPEPVAVPEPVKPTVDPQIQAQKLEKAALARKRVEDKKIEQQQERLATEQRNRELEQQRVNQERLAAERARPAAPAPAPAFDSRQYQPLSKEAPDYPERALDKNIEGDCSVEYTVNIQGRVENPRVLDGCHPLFMRPSLAAANTFRYQPRIVDGKPVPVPAVRNTFHYRIK
>NC_012660.1|WP_012724839.1|4088355_4088802_-|protein-TolR
MLTRPQRKHGPKAEMNVVPYIDVMLVLLVIFMVTAPMLTQGVKIELPKVAAEALATDTRQQILTLSVKADGGYYWNLGGELDTRHQTDSAVTLDEMGAKVMQVVAARSDTQVYIRADDNAGYGRVVAAMAVLQKGGVSNLGLVTEAPQ
>NC_012660.1|WP_012724840.1|4088817_4089510_-|protein-TolQ
MHATMEHMTIWGLISDASLLVKAVMVTLLLASLLSWYLIIQRGSVLRRLERQLNGFVRRFRAASDLQPLYRETVQAGEGGIAPIFIAGVQEYQHLHSHDPAVLEGVERALQVAITEQEIELEKGLQFLATVGSVSPYIGLFGTVWGIMNSFIGLSQVQQATLSTVAPGIAEALIATAIGLFAAIPAVIAYNRFAARGQTLLTRYYAFGNELQVRLHRTLRGTPINLAVAA
>NC_012660.1|WP_043205507.1|4089557_4091423_-|phytase
MRISKLYLLIALAACSPVMAADLALTPWAPSLNAEAMAFLPNGSERLAAGTRDGLQLLDKNGAELARFTGNFSSLDTRVVGAQVLVASLDNDRQQALLISLDASTKTFGQPLYLPTRDYPVNGLCLYRDGAANLFVFLVGEEGKGEQWLVGNGSTLLAEAQRVRGLPLPPSAQFCQVDDATQQLVVNEENVGWWAYPAHPEADVKRAPVALFDSPKREAGAMALVPGGVVALDPKTAQLHLFQHSGERWVEQSSLTLPGLKEPEQLSVNGQHLLVRDDDTGKLYQGTLNWQAKPVAAAPVLPEVAALRQTDPVGRQGDAADDPAIWIHPTQPEKSRVLGTNKKQGLLAYDLDGKLLQELAVGRLNNVDVRPHFKLGAHTVDLAVASNRDRNSLSLFSIDRQSGELREAGEVPTPLKDIYGICLFQPAGGDLYAIANGKDGTFLQYRLSAPDGRVQGELVRQFKVDSQPEGCVADDQRQRLFIGEEDVGVWAVDARADQPATLTSVIKVGPQLQADVEGLALYQSDKRDYLVISSQGNDSYVVVDAEPPFATHGAFRVGLNAAAGIDGASETDGLEVTALNLGGPWSQGMLVVQDGRKRMPEQTQNFKFVPWAEVTRTLKLP
>NC_012660.1|WP_012724842.1|4091565_4094079_-|TonB-dependent-receptor
MYKRTGLVSFTLTALALAMASERLNAADAATTEHVEVVGQAAAMDQALKEQRKSDSIKSVVHADGVAQLPDENVAEAAQRLPGISVERDQGEGRFVSVRGLGPDLNSVTINGTLVPAPESARRAVALDVLPSELVQSLSVIKTLTPDMDANSLGGTVDVQSLSAFDHKGLFYTGSTEASYDKNTRQTSPKFSGAASNRFSLGDGIDNFGVAAALSWQKRDFGSDNVETGGAWDFTDGAKLNEFEQRDYDISRERAGGGLNFDYKPDDLSSYYLRTLYSRYTDTETRNAASLEFADPQAPGELGDAEAKRKLKNREETQEIQSYVFGGERMLGLWTLSGQAGYSQSSEDSPAHIAGATFDGGDFANSGFYDQDKPRPIIGSGFYDARNFTLDKVDWEKQNTKDTEKNLRLDLARDYDLSGYASQVKFGGKVSRRHKDNDLEAWVYKDFDTLGFSADQLNLSQFQKGSVDYRLGNYGPGISPGAIKQLIGSLNPADFYDETESRVNDFTIREDINAGYLMNTIDIDDWRFIAGLRYEGTEFEAKGTGATDGVFTPTETKRRYHHWLPGLHARYQIDKHTQVRAAWTKSVVRPTFGQLAPGFVIDDDEATFGNPDLKPLESSNLDLGIEHFMGRAGTVSAFVFYKDIKNFVYNTDLAGTGAWTNFAEAHTYANGDSAKLYGLELAYSQKFDWLPAPWNGLLIGANSTFSRSSADIEGFDSTSGTNRKRNISLPNQSDTVGNLMLGWEDDKLSLRVSANYKSAYLYELASINDKAHDLHVDAQTFVDFSACYSLTKNLQVSFEAQNLTDESYFVYTGHRSYNGQYEEYGPTYKLGLTFTHF

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1280008 : 1319173

uncultured_Caudovirales_phage(33.33%)

plate,tail,tRNA,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012722482.1\|1280008_1280479_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_012722483.1\|1280614_1281724_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	8.3e-22	38.4
WP_012722484.1\|1281720_1282641_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	7.1e-19	27.4
WP_012722485.1\|1283074_1285183_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
WP_012722486.1\|1285260_1285599_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_012722487.1\|1285678_1286149_-	bacterioferritin	NA	NA	NA	NA
WP_010564137.1\|1286350_1286569_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_003172097.1\|1286812_1287415_+	peroxiredoxin	NA	NA	NA	NA
WP_010564138.1\|1287752_1288424_-	ribonuclease T	NA	NA	NA	NA
WP_012722488.1\|1288420_1289467_-	dihydroorotase	NA	NA	NA	NA
WP_012722489.1\|1289623_1290532_+	OmpA family protein	NA	NA	NA	NA
WP_012722490.1\|1290673_1291891_+	argininosuccinate synthase	NA	NA	NA	NA
WP_012722491.1\|1292516_1293149_+	response regulator transcription factor	NA	NA	NA	NA
WP_012722492.1\|1293233_1293416_-	hypothetical protein	NA	NA	NA	NA
WP_012722493.1\|1293523_1294162_-	endonuclease III	NA	NA	NA	NA
WP_012722494.1\|1294289_1295453_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_012722495.1\|1295603_1297655_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_012722496.1\|1297827_1298922_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_003208688.1\|1299416_1299740_-	ferredoxin family protein	NA	NA	NA	NA
WP_012722497.1\|1299882_1302474_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.1e-28	22.9
WP_012722498.1\|1302643_1303015_-	hypothetical protein	NA	NA	NA	NA
WP_043204860.1\|1303007_1303496_-	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	2.2e-27	44.5
WP_173390396.1\|1303753_1304497_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	9.9e-120	87.4
WP_148270890.1\|1304502_1304751_+	hypothetical protein	NA	NA	NA	NA
WP_012722501.1\|1305088_1305433_+	hypothetical protein	B5TK61	Pseudomonas_phage	1.5e-46	82.8
WP_012722502.1\|1305454_1305970_+	hypothetical protein	NA	NA	NA	NA
WP_043204862.1\|1305973_1306585_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	5.0e-45	54.5
WP_012722504.1\|1306594_1306927_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.5e-35	68.2
WP_043204864.1\|1306923_1307919_+\|plate	baseplate J/gp47 family protein	A0A2H4JC04	uncultured_Caudovirales_phage	5.0e-111	63.5
WP_012722506.1\|1307915_1308545_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	8.8e-45	53.4
WP_012722507.1\|1308545_1310522_+\|tail	phage tail protein	A0A1W6JT73	Escherichia_phage	1.9e-37	27.0
WP_085983645.1\|1310590_1310917_+	hypothetical protein	NA	NA	NA	NA
WP_043204866.1\|1311002_1311194_+	hypothetical protein	NA	NA	NA	NA
WP_012722510.1\|1311196_1312363_+\|tail	tail protein	B0ZSG8	Halomonas_phage	4.2e-125	57.5
WP_012722511.1\|1312362_1312869_+\|tail	phage major tail tube protein	Q6R4W3	Vibrio_virus	3.2e-21	33.9
WP_012722512.1\|1312920_1313493_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	3.4e-27	37.9
WP_012722514.1\|1313621_1314773_+	hypothetical protein	NA	NA	NA	NA
WP_043204869.1\|1314772_1315156_+\|tail	phage tail protein	B0ZSH2	Halomonas_phage	8.6e-35	58.3
WP_012722516.1\|1315148_1315361_+\|tail	tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	2.4e-18	61.4
WP_012722517.1\|1315370_1316381_+	hypothetical protein	A0A2H4JH05	uncultured_Caudovirales_phage	4.6e-96	53.5
WP_043204870.1\|1316402_1316960_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	8.0e-74	73.8
WP_012722519.1\|1316947_1317448_+\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	2.3e-35	58.4
WP_012722520.1\|1317529_1318030_+	CinA family protein	B5TK85	Pseudomonas_phage	7.4e-71	83.1
WP_012722521.1\|1318114_1319173_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_2

1436978 : 1441924

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012722616.1\|1436978_1437728_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-62	50.2
WP_010563544.1\|1437769_1438405_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-40	51.7
WP_012722617.1\|1438612_1439449_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
WP_012722618.1\|1439555_1440560_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
WP_002554837.1\|1440758_1440968_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_003189215.1\|1441357_1441924_+	dCTP deaminase	S5VM63	Pseudomonas_phage	3.7e-74	73.3

DBSCAN-SWA_3

3106240 : 3124226

uncultured_Caudovirales_phage(41.18%)

integrase

attL 3097371:3097386|attR 3120641:3120656

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3097371:3097386	attL	NA	NA	NA	NA
WP_080567188.1\|3106240_3107827_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	4.9e-60	28.3
WP_043205289.1\|3107847_3109041_-\|integrase	site-specific integrase	J7HXC4	Pseudomonas_phage	9.9e-122	58.0
WP_012724001.1\|3109228_3109450_-	hypothetical protein	A0A2H4J1L2	uncultured_Caudovirales_phage	8.5e-19	73.2
WP_012724003.1\|3109937_3110396_-	hypothetical protein	B5WZU9	Pseudomonas_phage	4.3e-57	70.2
WP_012724004.1\|3110388_3110712_-	hypothetical protein	NA	NA	NA	NA
WP_012724005.1\|3110761_3111319_-	HNH endonuclease	Q94MV4	Myxococcus_phage	5.6e-35	60.3
WP_043206230.1\|3111315_3111921_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	2.2e-48	52.8
WP_012724007.1\|3111920_3112352_-	hypothetical protein	A0A2H4JDN9	uncultured_Caudovirales_phage	3.8e-07	39.4
WP_148270913.1\|3112411_3113188_+	hypothetical protein	NA	NA	NA	NA
WP_012724009.1\|3113202_3113373_-	DUF4406 domain-containing protein	NA	NA	NA	NA
WP_012724010.1\|3113369_3114011_-	hypothetical protein	NA	NA	NA	NA
WP_012724011.1\|3114062_3114494_+	hypothetical protein	NA	NA	NA	NA
WP_012724012.1\|3114564_3116478_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.2e-108	37.3
WP_012724013.1\|3116526_3117210_+	hypothetical protein	NA	NA	NA	NA
WP_148270952.1\|3117447_3117762_+	hypothetical protein	NA	NA	NA	NA
WP_012724015.1\|3117745_3118090_-	hypothetical protein	A0A2H4J0R5	uncultured_Caudovirales_phage	3.6e-16	49.6
WP_012724016.1\|3118159_3118630_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	5.2e-74	89.4
WP_012724017.1\|3118626_3118869_-	hypothetical protein	A0A2H4J1H1	uncultured_Caudovirales_phage	6.2e-15	61.2
WP_012724018.1\|3118865_3120494_-	YqaJ viral recombinase family protein	A0A2H4J6P1	uncultured_Caudovirales_phage	6.6e-209	73.8
WP_041160923.1\|3120490_3121297_-	phage recombination protein Bet	U6C6J0	Ralstonia_phage	3.9e-69	54.3
3120641:3120656	attR	NA	NA	NA	NA
WP_012724020.1\|3121465_3121660_-	hypothetical protein	Q9MC67	Pseudomonas_phage	2.1e-05	44.4
WP_012724021.1\|3121656_3121848_-	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	3.6e-18	74.6
WP_043205301.1\|3121844_3122282_-	hypothetical protein	A0A1B0VMC3	Pseudomonas_phage	5.3e-65	84.1
WP_148270914.1\|3122503_3123136_+	hypothetical protein	NA	NA	NA	NA
WP_012724023.1\|3123591_3123843_-	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_012724024.1\|3124007_3124226_-	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	6.4e-19	74.6

DBSCAN-SWA_4

3127715 : 3166272

Pseudomonas_phage(60.0%)

capsid,terminase,tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148270953.1\|3127715_3128417_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	5.8e-53	50.7
WP_012724032.1\|3128466_3128694_+	helix-turn-helix transcriptional regulator	A0A127KNT2	Pseudomonas_phage	6.9e-08	40.9
WP_012724033.1\|3128748_3129366_+	hypothetical protein	NA	NA	NA	NA
WP_043205307.1\|3129542_3130520_+	phage replication protein	A0A1B0VME0	Pseudomonas_phage	7.9e-117	72.9
WP_043205309.1\|3130506_3131304_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.0e-93	66.5
WP_012724036.1\|3131300_3131771_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	1.1e-52	61.5
WP_012724037.1\|3131767_3132346_+	recombination protein NinG	A0A059VA66	Pseudomonas_phage	1.4e-68	63.0
WP_012724038.1\|3132342_3132888_+	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	1.0e-57	62.5
WP_012724039.1\|3132884_3133739_+	hypothetical protein	NA	NA	NA	NA
WP_173390384.1\|3133854_3134046_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	5.6e-11	79.5
WP_012724041.1\|3134054_3134390_+	hypothetical protein	NA	NA	NA	NA
WP_012724042.1\|3134599_3134971_+	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-24	82.1
WP_012724043.1\|3134970_3135309_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	7.6e-19	61.6
WP_012724044.1\|3135362_3135578_+	hypothetical protein	NA	NA	NA	NA
WP_012724045.1\|3135574_3135766_+	hypothetical protein	NA	NA	NA	NA
WP_012724046.1\|3135762_3136017_+	hypothetical protein	NA	NA	NA	NA
WP_012724047.1\|3136067_3136289_-	hypothetical protein	NA	NA	NA	NA
WP_012724048.1\|3136378_3136978_+	hypothetical protein	A0A2H4J2I6	uncultured_Caudovirales_phage	2.8e-24	41.0
WP_012724049.1\|3136979_3138470_+\|terminase	terminase	A0A2H4J2I1	uncultured_Caudovirales_phage	3.1e-274	90.3
WP_012724050.1\|3138469_3139930_+	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	2.5e-231	80.5
WP_012724051.1\|3139913_3140960_+\|capsid	minor capsid protein	A0A2H4J3G9	uncultured_Caudovirales_phage	2.2e-133	70.7
WP_012724052.1\|3140968_3141457_+	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.5e-23	37.6
WP_012724053.1\|3141527_3141746_+	hypothetical protein	NA	NA	NA	NA
WP_012724054.1\|3141844_3142612_+	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	1.3e-82	68.2
WP_012724055.1\|3142615_3143593_+	hypothetical protein	A0A2H4JIE6	uncultured_Caudovirales_phage	4.7e-154	82.8
WP_012724056.1\|3143648_3143954_+	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	2.1e-23	46.2
WP_012724057.1\|3143964_3144342_+	hypothetical protein	A0A2H4J0N2	uncultured_Caudovirales_phage	3.8e-43	76.0
WP_012724058.1\|3144344_3144737_+	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	1.0e-43	67.7
WP_012724059.1\|3144738_3145395_+	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	2.1e-89	76.1
WP_012724060.1\|3145391_3145808_+	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	2.1e-66	91.3
WP_012724061.1\|3145881_3146538_+\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	2.3e-51	50.2
WP_012724062.1\|3146541_3146922_+	hypothetical protein	A0A2H4J9Y6	uncultured_Caudovirales_phage	3.8e-27	50.4
WP_012724063.1\|3146939_3147242_+	DUF1799 domain-containing protein	A0A1B0VMG9	Pseudomonas_phage	1.6e-23	56.2
WP_012724064.1\|3147269_3150323_+\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	3.3e-177	41.5
WP_012724065.1\|3150322_3150661_+\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	6.6e-55	85.7
WP_012724066.1\|3150671_3151424_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	7.4e-139	92.4
WP_012724067.1\|3151426_3152191_+	C40 family peptidase	A0A1B0VP68	Pseudomonas_phage	9.8e-139	89.6
WP_012724068.1\|3152216_3152462_+	hypothetical protein	NA	NA	NA	NA
WP_043205310.1\|3152746_3153829_-	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	2.7e-65	40.2
WP_148270915.1\|3154011_3154212_+	hypothetical protein	NA	NA	NA	NA
WP_012724072.1\|3154301_3154724_+	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	1.7e-68	95.7
WP_043205312.1\|3154779_3155373_+\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	4.2e-97	92.9
WP_012724074.1\|3155432_3159002_+\|tail	phage tail protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	68.4
WP_012724076.1\|3159343_3159973_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	5.9e-65	57.3
WP_043205313.1\|3161631_3162057_+	cell wall hydrolase	A0A1B0VMI2	Pseudomonas_phage	2.3e-73	88.7
WP_043205314.1\|3162056_3162557_+\|lysis	lysis protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.4e-53	72.7
WP_043205316.1\|3162710_3163391_-	SOS response-associated peptidase family protein	A0A2H4J991	uncultured_Caudovirales_phage	4.5e-127	92.0
WP_012724082.1\|3163675_3164035_-	hypothetical protein	A0A2H4IZV2	uncultured_Caudovirales_phage	1.0e-29	53.8
WP_012724083.1\|3164128_3164338_-	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	6.1e-11	58.5
WP_012724084.1\|3164519_3164771_-	hypothetical protein	NA	NA	NA	NA
WP_012724085.1\|3165103_3165817_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_043205317.1\|3166062_3166272_-	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	2.6e-09	52.4

DBSCAN-SWA_5

4183990 : 4190272

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012724926.1\|4183990_4184383_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	4.1e-56	83.1
WP_012724927.1\|4184384_4184735_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.2e-37	67.5
WP_012724928.1\|4184734_4185013_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	5.3e-26	56.6
WP_012724929.1\|4185009_4185345_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.4e-43	76.6
WP_012724930.1\|4185341_4186343_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	5.0e-167	86.3
WP_012724931.1\|4186431_4187427_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_012724932.1\|4187596_4188991_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_012724933.1\|4188991_4190272_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	53.2

DBSCAN-SWA_6

4265762 : 4336172

Escherichia_phage(18.18%)

coat,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012724992.1\|4265762_4267151_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	5.7e-44	31.0
WP_012724993.1\|4267166_4268867_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	4.6e-205	61.7
WP_043205556.1\|4269116_4269620_+	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.5e-10	33.3
WP_012724995.1\|4269616_4270366_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_012724996.1\|4270519_4272049_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_012724997.1\|4272048_4273251_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012724998.1\|4273266_4274718_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012724999.1\|4274714_4275188_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_080567201.1\|4275331_4279003_-	translocation/assembly module TamB	NA	NA	NA	NA
WP_012725001.1\|4279002_4280730_-	outer membrane protein assembly factor	NA	NA	NA	NA
WP_012725002.1\|4280794_4281445_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012725003.1\|4281613_4282426_+	exodeoxyribonuclease III	A0A0N9QXX6	Chrysochromulina_ericina_virus	5.7e-12	24.1
WP_012725004.1\|4282564_4283896_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012725005.1\|4284016_4285246_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_012725006.1\|4285397_4286333_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012725007.1\|4286541_4286934_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012725008.1\|4286950_4287850_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	2.6e-42	38.6
WP_012725009.1\|4288463_4290101_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.9e-30	29.1
WP_043205557.1\|4290250_4291414_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_012725011.1\|4291425_4293033_+	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	5.6e-19	56.5
WP_012725012.1\|4293048_4293855_+	gamma-carboxygeranoyl-CoA hydratase	NA	NA	NA	NA
WP_012725013.1\|4293851_4295777_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_012725014.1\|4295773_4296406_-	helix-turn-helix domain-containing protein	A0A0N7BTS4	Escherichia_phage	2.9e-27	37.9
WP_012725015.1\|4296536_4296887_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_043205559.1\|4297355_4298507_+	carboxypeptidase family protein	NA	NA	NA	NA
WP_012725017.1\|4298636_4299176_-	cytochrome b	NA	NA	NA	NA
WP_012725018.1\|4299172_4300255_-	catalase family peroxidase	NA	NA	NA	NA
WP_043205560.1\|4300422_4300929_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012725020.1\|4300925_4301663_+	anti-sigma factor	NA	NA	NA	NA
WP_173390386.1\|4301659_4302622_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_080567203.1\|4302627_4304985_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012725023.1\|4305056_4305845_-	molecular chaperone	NA	NA	NA	NA
WP_012725024.1\|4305870_4306359_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_043206289.1\|4306361_4306904_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015884701.1\|4306922_4307465_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_173390407.1\|4307458_4307947_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015884703.1\|4308171_4309266_+	cell division protein ZapE	NA	NA	NA	NA
WP_043206290.1\|4309305_4310598_+	protein kinase	NA	NA	NA	NA
WP_015884705.1\|4311546_4312254_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_015884706.1\|4312354_4313212_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015884707.1\|4313323_4314427_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_015884708.1\|4314456_4315284_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_015884709.1\|4315398_4315956_+	cytochrome b	NA	NA	NA	NA
WP_015884710.1\|4315945_4316830_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_015884711.1\|4316887_4318927_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_015884712.1\|4319139_4320270_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_015884713.1\|4320266_4321295_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_043205565.1\|4321628_4322633_+	hypothetical protein	NA	NA	NA	NA
WP_015884715.1\|4322847_4323318_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_015884716.1\|4323463_4326124_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_015884717.1\|4326125_4326908_-	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_015884718.1\|4326997_4327897_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015884719.1\|4328015_4329221_+	MFS transporter	NA	NA	NA	NA
WP_043205570.1\|4329167_4329692_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015884721.1\|4329789_4331664_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_003174819.1\|4331895_4332168_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	1.8e-18	59.6
WP_015884722.1\|4332317_4334714_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.5e-220	51.6
WP_003238279.1\|4334888_4336172_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-138	59.6

DBSCAN-SWA_7

4573927 : 4585009

Pseudomonas_phage(44.44%)

terminase,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043205637.1\|4573927_4574146_+	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	7.3e-23	82.9
WP_148270927.1\|4575435_4575735_-	hypothetical protein	NA	NA	NA	NA
WP_015884927.1\|4576414_4576948_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	4.1e-75	78.0
WP_015884928.1\|4577048_4579037_-	acyltransferase	C6ZR20	Salmonella_phage	1.0e-107	38.3
WP_043205642.1\|4579151_4579496_-\|tail	tail fiber assembly protein	A0A2P1JUG3	Erwinia_phage	7.0e-12	48.9
WP_015884929.1\|4581012_4581612_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.0e-82	72.9
WP_080567206.1\|4581602_4582262_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	2.3e-88	71.2
WP_043205644.1\|4582489_4582981_-\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	5.0e-19	46.0
WP_015884931.1\|4583162_4583501_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	5.1e-23	48.6
WP_003174972.1\|4584369_4584726_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002553164.1\|4584706_4585009_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9

DBSCAN-SWA_8

6182118 : 6234525

Tupanvirus(20.0%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015886235.1\|6182118_6182619_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_015886236.1\|6182792_6183680_+	acyltransferase	NA	NA	NA	NA
WP_015886237.1\|6183676_6184249_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_043206004.1\|6184385_6184844_+	anti-sigma factor	NA	NA	NA	NA
WP_015886239.1\|6184970_6186170_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	29.7
WP_015886240.1\|6186371_6187229_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_015886241.1\|6187239_6187872_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_015886242.1\|6187996_6191014_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_015886243.1\|6191010_6191313_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_010207084.1\|6191328_6192579_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_015886244.1\|6192601_6193855_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.5e-99	52.5
WP_043206007.1\|6194091_6194820_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_015886246.1\|6194910_6195951_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_043206010.1\|6196127_6196328_+	hypothetical protein	NA	NA	NA	NA
WP_015886247.1\|6196439_6198257_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_043206012.1\|6198533_6199979_+	cytosine permease	NA	NA	NA	NA
WP_015886249.1\|6199975_6200791_+	carbon-nitrogen hydrolase	NA	NA	NA	NA
WP_015886250.1\|6200794_6201895_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_015886251.1\|6202175_6203471_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_015886252.1\|6204394_6205165_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_015886253.1\|6205175_6206396_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_015886254.1\|6206395_6208354_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_015886255.1\|6208525_6210586_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_015886256.1\|6210601_6211132_-	hypothetical protein	NA	NA	NA	NA
WP_015886257.1\|6211201_6212179_-	membrane dipeptidase	NA	NA	NA	NA
WP_015886258.1\|6212398_6212800_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_015886259.1\|6212803_6214042_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_015886260.1\|6214038_6214335_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015886261.1\|6214552_6214969_+	DUF3010 family protein	NA	NA	NA	NA
WP_015886262.1\|6215092_6216271_-	hypothetical protein	NA	NA	NA	NA
WP_015886263.1\|6216339_6217284_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_015886264.1\|6217477_6218422_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015886265.1\|6218509_6219397_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_015886266.1\|6219462_6220428_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_015886267.1\|6220441_6220942_+	thioesterase family protein	NA	NA	NA	NA
WP_015886268.1\|6221166_6221430_+	hypothetical protein	NA	NA	NA	NA
WP_005792167.1\|6221525_6222629_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_015886269.1\|6223160_6224537_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_145994247.1\|6224541_6224757_+	hypothetical protein	NA	NA	NA	NA
WP_015886270.1\|6224953_6225901_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015886271.1\|6225969_6226815_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_015886272.1\|6226811_6227990_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.7e-26	37.1
WP_015886273.1\|6228178_6230170_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	4.1e-19	28.2
WP_015886274.1\|6230502_6231096_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_015886275.1\|6231206_6232679_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_015886276.1\|6232821_6234525_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.4e-51	31.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012660

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection