CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008260	Alcanivorax borkumensis SK2, complete genome	0 crisprs	RT,DEDDh,Cas9_archaeal,cas3,DinG,csa3,WYL	0	0	1	0

1. NC_008260

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1015446 : 1022473	7	Enterobacteria_phage(50.0%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_008260|1015446:1022473|DBSCAN-SWA
AATGGAATTGGGTGATATTAAGTTAGCCGTTATCGGTTTGGGCTACGTGGGTTTGCCGTTGGCTGTGGAATTTGGTAAACGTCGTTCAGTCATTGGTTTTGACATCAACAAGCCACGCATTGATGCGTTGAACGATGGCCATGATGCTACGCTGGAAGTGGATGATGAAGAGCTTGCATCGGCTAACCAATTAACCTTTAGTGCTGATCCAGCCAGCCTGCGTGACTGCAACGTTTACATCGTTACTGTGCCTACGCCGATTGATGAGCATAAACGGCCTGACCTAACGCCATTGGTAAAGGCGTCAGAAACCATCGGCAAGACGCTCAAAAAAGGCGATATTGTCATCTACGAATCCACCGTCTATCCGGGTGCCACAGAAGAAGATTGCGTGCCTGTGTTGGAGAAGGTTTCCGGGCTGGTCTTCAACAAGGACTTCTTCGCCGGTTATAGCCCAGAGCGTATCAACCCAGGTGATAAAGAGCATCGTGTTACTACGATCACCAAAGTCACATCCGGCTCTACCCCGGAAGTGGCGGAACTGGTGGACCAAATTTACGCCTCCATTATCACCGCCGGCACCCACAAGGCGTCCAGTATCAAGGTGGCCGAAGCCGCAAAGGTTATCGAAAATACTCAGCGTGATCTGAATATCGCCTTGGTTAACGAACTCTCGATGATTTTTAATCGAATGGGAGTAGACACCGAGGAAGTGCTGCAGGCCGCAGGCACCAAATGGAATTTTTTACCCTTCCGGCCAGGCTTGGTGGGCGGGCATTGTATCGGTGTAGACCCTTATTACCTCACGCATAAAGCCCAATCGATAGGCTACCACCCGGAAGTCATACTTGCTGGGCGTCGAATTAACGATGCCATGGGCCGCCATGTGGCAAGCGAGCTGGTTAAGGCTATGCTCACCCGTAGCATTCAGGTTAACGGTTCCCGAGTCCTGGTTATGGGGCTTACCTTCAAGGAAAACTGCCCGGACCTGCGTAACACGCGTGTGGTCGACGTGGTGAAAGAGCTGCAGGACTACAACATCCAGGTAGACGTTCATGATCCCTGGATTAACGCTGCAGAGTCCCAACACGAATACGGCATCACGCCAGTAGCAACGCCAGAGATGGAGGCCTACGACGCCATCCTTCTAGCCGTGGGCCACAACCAGTTCAAAGCCATGGGCTCCCAGGCTATCAGAGGCTTCGGCAAACCCGAGCATATCCTGTATGACCTGAAATACAGCCTCCCCAAGGAAGAGGTGGACCTAAGGTTGTGAAGGAACGTTGCTAGCTGTGGGCCACTAGGGAAGAAACCCATAGGCCTGAGCGATGAGAAGGCGCGTACGAAGCGCGGCCCGGTAGAGTAGACGGAGCGGATAACGTCGCTGGCAGCTCGAGCCTCCACAGTCGAAACCCGAAAGGCAATTTTTGTGGGGCGGTCGTTCTACCGAGAAAGGAACGTAAGCAGGAAAGTCGCGGCGCAACAACCGCGCCCACAAACAAACTGAATCTACGAGAAACTGAATCGCCATGACAACCCGCTACGAACAGGTACAGCAAGACCTTAAAGCCAATCCCAAAACCTGGCTCGTCACCGGCGTGGCCGGTTTTATCGGCTCGAATTTACTCGAAACATTGTTGGGCTTGAACCAAACTGTCATCGGCCTGGACAACTTTGCCACTGGCCACCAGCACAACCTGGATGAAGTCCAGCAAACCGTCACTGCTGACCAATGGGCCAACTTCACCTTCATTGAAGGCGACATCCGCAGTCTGGATGACTGCAAAAAAGCGGTCACGGGTGTGGACTACGTACTCCATCAGGCTGCCCTGGGCTCCGTCCCGCGTTCTATCGAAGACCCAATCACTACTAACCAAGCGAATATCGACGGCTTTCTGAATATGCTAGTGGCCGCCAAAGACGAAAACGTGGCCAGCTTCACCTACGCGGCCTCCAGTTCTACCTACGGCGACCACCCGGGCCTACCCAAAGTGGAAGACAAAATCGGCAAGCCCCTTTCCCCTTATGCCGTCACGAAATACGTCAACGAACTCTATGCTGACGTATTTGCCCGCACCTACGATTTCAACACCATCGGCTTGCGCTATTTTAACGTGTTCGGCAAACGCCAGGACCCTAACGGTGCCTACGCCGCGGTCATCCCCAAATGGACCGCCGCCATGATCCAGGGCGAGGACGTGTTCATCAATGGCGACGGCGAAACCAGCCGGGATTTCTGCTTTATCGAGAATGTGGTGCAGATAAATCTGTTGGCCGCCACCGCAGAGGCAGAAGCAAAAAACCAGGTCTTCAACGTGGCCTTGGGCGACAGAACCACGCTGAACACCCTGTTCGATGCGCTTAAAACAGCCCTGAAAGAGTGTGGGGTGAACTATGAAAGTGATCCTGTTTACCGTGATTTCCGCGCAGGAGACGTTCGCCACTCCCAGGCCGACATCAGCAAGGCACAAGAGTTGCTGGGCTATGAACCCGCCTACCGCATTTACGATGGCATCGGTAAGGCCATGCCCTGGTACGAAAGCACACTGAATACTGGAAGCGACGCATGAAAATTCTGGTCACCGGCGGTGCAGGCTTTATCGGTTCCGCCGTTATTCGTCACATCATCAGCAACACGGACGACAGTGTCGTCAATGTGGACAAGCTCACCTATGCCGGCAACCTGGAAAGCCTGCTCAGTGTCAGCGACAGTCCCCGCTATACCTTTGAAAAAGTGGATATTTGTGACCGGCATACCTTGGATGGGGTATTACAACGGCACCAGCCCGATGTGATCATGCACCTCGCCGCAGAAAGCCACGTGGACCGTTCCATTGATGGCCCGGCGGCCTTCATGGAAACCAACATCATAGGGACCTACACCTTGCTGGAAGCGGCACGCCAATACTGGAACAGCCTAGACGACACTGCCCAGCAGGCTTTCCGCTTCCATCACATCTCCACCGATGAAGTGTACGGCGATCTGGATGGCCCGGAAGACTTGTTTACCGAAACCACTCCCTATGCACCCAGCTCCCCGTATTCCGCCAGCAAGGCCAGCTCCGACCATCTGGTGCGCGCCTGGTTGCGGACCTATGGCTTTCCCACACTGATCACCAACTGCTCCAACAATTACGGGCCTTTCCACTTCCCGGAAAAGCTCATCCCGCTGATGATCCTCAATGCCCTGGAAGGAAAACCTTTACCGGTGTACGGCCAGGGTACCCAGGTACGTGACTGGCTCTACGTGGAAGACCATGCCCGCGCCCTCTACAAAGTGGCAACTGAAGGCAAAGTGGGGGAGACCTACAATATCGGCGGCCACAACGAAAAACAGAACATCGACGTGGTACACACCCTCTGTGATCTGCTCGAAGAGCTGGTACCGAGTAAACCAGAAGGTATCAGCCAGTACCGGGATCTGATCACACATGTCCGGGACCGCCCAGGCCATGATCTGCGCTACGCCATCGACGCCAGTAAGATCGAGCGAGAGCTGGGCTGGACCCCGCAAGAAACTTTTGAAACCGGCATCCGCAAGACCGTGCTGTGGTATCTCGATAACAGCGAATGGTGCCAACGAGTGCAGGATGGCAGCTACCGGCGCGAACGGCTTGGCACCGGTTCAGGCACTGAGGGAAAGGAATAAAGGCCATGGCAAGGACGCAGGCAAAAAAGACAATCTTGCTGCTAGGCAAAAACGGACAGGTCGGCTGGGAGTTGCAGCGTGCCCTGGCGCCGTTCGGTCAACTCATCGCCTTGGATCGCGCCGGCCAAAATGGATGGTGTGGTGATATTGGCAACCTGGATGGCCTGCGCGAAACCATCGAGCACATCAAGCCGGACGTGCTGGTCAACGCCGCGGGCTACACTGCAGTAGATCAGGCCCAGAGCGAACCGGAGCTGGCTGAGCGACTCAATCATCAGGCTCCGGCCTTGATGGCAGAGTTGATGAAAGCACATGGCGGCTGGCTGGTACATTACTCTACGGATTACGTCTTCGATGGCAGCGGCAACCAGCCCTGGAAAGAAACAGACAGCGCCGGCCCCCTCAACGTCTACGGCGCCACGAAGCTGGCCGGCGAGCAGGCCATTCAGGCCAGCGGCTGCCAGCATCTGATATTCCGCACCAGCTGGGTGTATGCCAGCCGGGGCAACAACTTCGCCAAAACCATGCTGCGCCTTGCCAAAGAGCGCGACACGCTGAATGTGATCGACGATCAGATCGGCGCGCCCACCGGTGCCGAACTGATTGCAGATGTAACGGCCCACGCGCTGCGCCAGTGGCAACAACAGCCTGACGTCTCAGGCCTTTACCACCTGGCCGCCAGCGGCGAGACGTCGTGGTACGACTATGCCTGCTACGTGTTCGGCTGGGCGCAAAATGAAGGACTGCCGCTGGCGATTCAGTCAGTCAACCCGATCCTCAGCGAAGACTACCCAGTACCCGCCATCCGGCCTAAAAACTCCCGCCTGGATGGCCAAAAGCTGGAAACCACCTTCAACCTCCAATTACCAGAGTGGAAGCAGGGCGTGGAACACATGATGTCTGAGGTGTTTGATGTTTAACAGCTTGCAGATTGGTAGAGCGGTAGCTGCATTATTAGTTGTCTTGCACCATGCGACGTTGGGAAGCCGCAAGTTTTATGGTGAGGCATTTGGTGGATTTTGGGGCTTTGGAAATATAGGCGTTGATTTTTTCTTCGTGCTCAGTGGATTTATTATCTACTGGGCCCATAAAAATGATGTGGGCGGACGAGCACAGGCGACTTTATACAGTAAAAAACGCTTTTTCAGGCTCTACCCGGCGTTCATACCAATATCTATCGCCATGCTTGCACTCTATATGATCTTGCCGAATCTGAGCCAGGGAGGAAGAGAGATTAGCCTGGCATCTTCTCTCTTTCTTATCCCCACAATGTATGGGAGTCCTGCATTGTCCGTAAGCTGGACGCTGATGCATGAATTCCTTTTCTACGTTGTTTTTTCTCTTTTCTTTATTTCAAGAAAGGCGTTCTGGATTGTGCTGGCAGTCTGGTCCGGCCTTATATTGGTGGCGCCCCTGAGTGGTGTGGATGGGTTTTATGCAAAGTTCATTTTGAATATGCACAATCTCCAGTTTTCCGTGGGTGTTCTTTGCGCTCTTTATTATCATCAAAAAACGGATAAAGGGCGCTCGGAAATAAAACCTGGATTCTTCATTCTAGGGAGTTTGGTAATGGCTATGCTGATTGCCACACTCGGAGACGTTGTGGGTGTATATGCAAAGCTCTTGAATGGTCTACTATTTGGCATGGTGATCCTGAGTCTGATCAGTATGGAGATCAGTGGGGTGTTGAGCTCTGTATTTAGATCAAAAATACTTCTTTTTCTGGGCGCCGCTTCGTATTCCATTTACTTGATACACAATCCTTTCCTTTCATTTTTGAATAGGGTAGGGGCGCCGCTCGCTAATGTGTATCAGGTCAATGTAGAGCTAATATTCATTGGTGCTGTAATCGCTTCTATCTTGGCTGGCGCTATTTACTACAAACTTTGGGAAAAGCCGGTTCTGGCCCTCTCCCGAAAATGGATCAAAAAGGGTTAGTTATGACTGCAACCAACCGTAAAGGCATCATTCTGGCCGGAGGCTCCGGCACACGCCTGTATCCACTCACCATTGGTGTGTCCAAGCAGCTACTGCCCATCTACGACAAGCCCATGATCTATTACCCGCTGTCAGTATTGATGCTGGCGGGTATCCGCGAAGTGCTGATCATCACCACCCCGGAAGATCAGGCCGGCTTCCAGCGCCTGCTGGGCGATGGCAGTCAGTTCGGTATCGAGCTCACCTATGCCATCCAGCCAAGCCCGGATGGCCTGGCCCAGGCCTTTATCATTGGCGAAGAGTTCATCGGCGATGCGCCGGTGTGCTTGGTGTTGGGCGACAACATCTATCACGGCCCAGGTTTGTCGCAACTACTCAAGAACGCAAATGCCCAGCAAAGCGGCGCCACCGTCTTTGGCTATCACGTCTCCGATCCGGAGCGTTTTGGGGTAGTGGAGTTCGATGAAAACAAGCGCGCGGTGTCCATCGAAGAGAAGCCTGCAAAGCCCAAATCCAATTACGCCGTTACTGGTCTCTATTTCTACGACAACGATGTGGTCGAGATCGCCAAGCAGGTAAAACCATCAAACAGAGGTGAGCTGGAAATCACCACCGTAAACCAGATGTACCTCGATCGTGGCGACCTCAACGTAGAACTGCTCGGTCGTGGCTACGCCTGGCTGGATACCGGCACTTTCGATTCCCTGCATGAAGCCGCGGGCTATATCGAAACCCTGGAAAAGCGCCAGGGCCTGAAAGTGGCCTGCCTGGAAGAAATTGCCTACCGCATGGGCTTTATCAGCAAGGCGCAGCTAAAGGAGCAGGCCGAACTGCTCAAGAAGAACAGTTACGGTGCCTATCTGGTGAAGTTAGTGGAGCAGGAATAATCATGGAAGTGATTGAAACCCGTATTCCAGAGGTAAAGCTCATCAAGCCGAAAGTGTTTGGCGATGAGCGTGGCTTCTTCATGGAAACCTGGAATGCACGAGCCTTTGCCGAAGCCGGTATCGACGCCACCTTCGTCCAGGACAACCATAGCCGCTCTGTCAAAAATACCCTTCGCGGCCTTCATTACCAGATCAAGCAGCCCCAGGGGAAACTGGTGCGCTGTACCCGTGGTGAGGTTTTTGATGTGGCGGTAGATCTGAGAAAAAGCTCGCCCACCTTTGGTCAGTGGGTGGGGGAAATACTATCGGAAGAGAACCAGAACCAGCTGTGGGTGCCGCCGGGGTTTGCCCATGGTTTTTTGGTGATGACCGAAACGGCTGATTTTCAGTATAAATGCACTGATTTCTATGCTCCTGAGCATGACCGGTGCATCCACTGGGCTGATTCAAAAATTGGGATTGACTGGCCATTTGAACCAGAAGCGCGATCGCCCCTCGTATCGCAAAAGGATGCGGCAGGCGCACGGCTGCTGGATGCAGAGGTATACGATTGA

Protein sequences of DBSCAN-SWA_1

>NC_008260|1015446:1022473|1015446_1016721_+|WP_011588192.1|DBSCAN-SWA
MELGDIKLAVIGLGYVGLPLAVEFGKRRSVIGFDINKPRIDALNDGHDATLEVDDEELASANQLTFSADPASLRDCNVYIVTVPTPIDEHKRPDLTPLVKASETIGKTLKKGDIVIYESTVYPGATEEDCVPVLEKVSGLVFNKDFFAGYSPERINPGDKEHRVTTITKVTSGSTPEVAELVDQIYASIITAGTHKASSIKVAEAAKVIENTQRDLNIALVNELSMIFNRMGVDTEEVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQSIGYHPEVILAGRRINDAMGRHVASELVKAMLTRSIQVNGSRVLVMGLTFKENCPDLRNTRVVDVVKELQDYNIQVDVHDPWINAAESQHEYGITPVATPEMEAYDAILLAVGHNQFKAMGSQAIRGFGKPEHILYDLKYSLPKEEVDLRL
>NC_008260|1015446:1022473|1021921_1022473_+|WP_011588198.1|DBSCAN-SWA
MEVIETRIPEVKLIKPKVFGDERGFFMETWNARAFAEAGIDATFVQDNHSRSVKNTLRGLHYQIKQPQGKLVRCTRGEVFDVAVDLRKSSPTFGQWVGEILSEENQNQLWVPPGFAHGFLVMTETADFQYKCTDFYAPEHDRCIHWADSKIGIDWPFEPEARSPLVSQKDAAGARLLDAEVYD
>NC_008260|1015446:1022473|1021034_1021919_+|WP_011588197.1|DBSCAN-SWA
MTATNRKGIILAGGSGTRLYPLTIGVSKQLLPIYDKPMIYYPLSVLMLAGIREVLIITTPEDQAGFQRLLGDGSQFGIELTYAIQPSPDGLAQAFIIGEEFIGDAPVCLVLGDNIYHGPGLSQLLKNANAQQSGATVFGYHVSDPERFGVVEFDENKRAVSIEEKPAKPKSNYAVTGLYFYDNDVVEIAKQVKPSNRGELEITTVNQMYLDRGDLNVELLGRGYAWLDTGTFDSLHEAAGYIETLEKRQGLKVACLEEIAYRMGFISKAQLKEQAELLKKNSYGAYLVKLVEQE
>NC_008260|1015446:1022473|1018011_1019094_+|WP_011588194.1|DBSCAN-SWA
MKILVTGGAGFIGSAVIRHIISNTDDSVVNVDKLTYAGNLESLLSVSDSPRYTFEKVDICDRHTLDGVLQRHQPDVIMHLAAESHVDRSIDGPAAFMETNIIGTYTLLEAARQYWNSLDDTAQQAFRFHHISTDEVYGDLDGPEDLFTETTPYAPSSPYSASKASSDHLVRAWLRTYGFPTLITNCSNNYGPFHFPEKLIPLMILNALEGKPLPVYGQGTQVRDWLYVEDHARALYKVATEGKVGETYNIGGHNEKQNIDVVHTLCDLLEELVPSKPEGISQYRDLITHVRDRPGHDLRYAIDASKIERELGWTPQETFETGIRKTVLWYLDNSEWCQRVQDGSYRRERLGTGSGTEGKE
>NC_008260|1015446:1022473|1016974_1018015_+|WP_011588193.1|DBSCAN-SWA
MTTRYEQVQQDLKANPKTWLVTGVAGFIGSNLLETLLGLNQTVIGLDNFATGHQHNLDEVQQTVTADQWANFTFIEGDIRSLDDCKKAVTGVDYVLHQAALGSVPRSIEDPITTNQANIDGFLNMLVAAKDENVASFTYAASSSTYGDHPGLPKVEDKIGKPLSPYAVTKYVNELYADVFARTYDFNTIGLRYFNVFGKRQDPNGAYAAVIPKWTAAMIQGEDVFINGDGETSRDFCFIENVVQINLLAATAEAEAKNQVFNVALGDRTTLNTLFDALKTALKECGVNYESDPVYRDFRAGDVRHSQADISKAQELLGYEPAYRIYDGIGKAMPWYESTLNTGSDA
>NC_008260|1015446:1022473|1019099_1020014_+|WP_011588195.1|DBSCAN-SWA
MARTQAKKTILLLGKNGQVGWELQRALAPFGQLIALDRAGQNGWCGDIGNLDGLRETIEHIKPDVLVNAAGYTAVDQAQSEPELAERLNHQAPALMAELMKAHGGWLVHYSTDYVFDGSGNQPWKETDSAGPLNVYGATKLAGEQAIQASGCQHLIFRTSWVYASRGNNFAKTMLRLAKERDTLNVIDDQIGAPTGAELIADVTAHALRQWQQQPDVSGLYHLAASGETSWYDYACYVFGWAQNEGLPLAIQSVNPILSEDYPVPAIRPKNSRLDGQKLETTFNLQLPEWKQGVEHMMSEVFDV
>NC_008260|1015446:1022473|1020006_1021032_+|WP_041704913.1|DBSCAN-SWA
MFNSLQIGRAVAALLVVLHHATLGSRKFYGEAFGGFWGFGNIGVDFFFVLSGFIIYWAHKNDVGGRAQATLYSKKRFFRLYPAFIPISIAMLALYMILPNLSQGGREISLASSLFLIPTMYGSPALSVSWTLMHEFLFYVVFSLFFISRKAFWIVLAVWSGLILVAPLSGVDGFYAKFILNMHNLQFSVGVLCALYYHQKTDKGRSEIKPGFFILGSLVMAMLIATLGDVVGVYAKLLNGLLFGMVILSLISMEISGVLSSVFRSKILLFLGAASYSIYLIHNPFLSFLNRVGAPLANVYQVNVELIFIGAVIASILAGAIYYKLWEKPVLALSRKWIKKG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011588192.1|1015446_1016721_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1HKZ1	Paramecium_bursaria_Chlorella_virus	4.0e-28	29.8
WP_011588193.1|1016974_1018015_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	E3T4Y8	Cafeteria_roenbergensis_virus	1.1e-73	46.2
WP_011588194.1|1018011_1019094_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.8e-101	54.5
WP_011588195.1|1019099_1020014_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_041704913.1|1020006_1021032_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	4.0e-10	26.6
WP_011588197.1|1021034_1021919_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.2e-103	65.5
WP_011588198.1|1021921_1022473_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	54.4