CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_002253	Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pLeu, complete sequence	0 crisprs	NA	0
NC_002528	Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete genome	0 crisprs	DEDDh,cas3	5
NC_002252	Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pTrp, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18375 : 29223

Salmonella_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009873979.1\|18375_18666_+	co-chaperone GroES	K4F9I2	Cronobacter_phage	6.5e-11	40.2
WP_009873980.1\|18714_20361_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	6.3e-175	63.5
WP_010895905.1\|20984_21596_+	elongation factor P	NA	NA	NA	NA
WP_009873982.1\|21613_22354_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	2.2e-58	46.6
WP_009873983.1\|22353_22848_-	primosomal protein DnaT	T1SA92	Salmonella_phage	2.6e-23	55.9
WP_009873984.1\|22944_23520_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_010895906.1\|23650_24787_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	1.7e-09	36.6
WP_009873986.1\|24949_25804_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	8.9e-40	40.2
WP_009873987.1\|25944_27774_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7J689	Paramecium_bursaria_Chlorella_virus	1.4e-119	41.9
WP_009873988.1\|27843_29223_-	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	A0A0N7G7I9	Chrysochromulina_ericina_virus	7.2e-31	35.1

DBSCAN-SWA_2

58934 : 67516

Vibrio_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009874012.1\|58934_60773_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	6.4e-35	33.3
WP_010895920.1\|60940_62674_-	DNA primase	B8Q5B5	Abalone_shriveling_syndrome-associated_virus	7.9e-35	29.7
WP_009874014.1\|62754_62970_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_009874015.1\|63203_64214_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.8e-76	45.6
WP_009874016.1\|64191_64839_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.2e-40	43.2
WP_009874017.1\|65110_66058_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.5e-11	27.4
WP_009874018.1\|66271_67516_+\|tRNA	tRNA CCA-pyrophosphorylase	K4F6S9	Cronobacter_phage	9.0e-49	35.3

DBSCAN-SWA_3

384858 : 408371

Vibrio_phage(15.38%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009874307.1\|384858_385593_+	3-oxoacyl-[acyl-carrier-protein] reductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.5e-14	29.0
WP_010896080.1\|385669_385912_+	acyl carrier protein	A0A1P8VWH3	Flavobacterium_phage	6.2e-07	41.3
WP_010896081.1\|385982_386621_+	dTMP kinase	A0A1S6L1T1	Vibrio_phage	2.3e-16	35.4
WP_010896082.1\|386617_387598_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_009874311.1\|387631_388426_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA
WP_009874312.1\|388522_389956_+	PTS glucose transporter subunit IIBC	A0A2I7SAJ6	Vibrio_phage	1.2e-09	45.3
WP_009874313.1\|389975_390320_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_164927336.1\|390378_390906_+	hypothetical protein	NA	NA	NA	NA
WP_010896084.1\|391154_392303_-	porin	Q1MVN1	Enterobacteria_phage	4.2e-53	32.9
WP_010896085.1\|392442_393843_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	37.3
WP_009874317.1\|393990_395190_-	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	4.7e-39	30.0
WP_009874318.1\|395462_395621_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_009874319.1\|395611_396475_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_009874320.1\|396650_398756_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	5.3e-17	27.1
WP_010896086.1\|398775_400566_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.1e-42	28.0
WP_010896087.1\|400569_401544_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_010896088.1\|401600_404468_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.1e-125	35.0
WP_010896089.1\|404544_406044_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.6e-44	33.6
WP_010896090.1\|406303_407320_+	ornithine carbamoyltransferase	M1I6M4	Paramecium_bursaria_Chlorella_virus	1.4e-12	33.2
WP_010896091.1\|407438_408371_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.5e-48	40.6

DBSCAN-SWA_4

529193 : 538184

Organic_Lake_phycodnavirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164927337.1\|529193_530936_+	SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	F2Y352	Organic_Lake_phycodnavirus	5.3e-23	31.4
WP_009874434.1\|531230_532316_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.5e-44	36.3
WP_009874435.1\|532635_532965_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_009874437.1\|533110_534985_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	9.5e-103	34.4
WP_009874438.1\|535057_535705_+	adenylate kinase	A0A2K9L833	Tupanvirus	6.6e-11	32.2
WP_010896140.1\|535935_536793_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-27	34.0
WP_010896141.1\|536789_538184_-\|tRNA	cysteine--tRNA ligase	H2EDD6	Moumouvirus	1.6e-41	30.2

DBSCAN-SWA_5

609521 : 617105

Diachasmimorpha_longicaudata_entomopoxvirus(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010896170.1\|609521_610076_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	8.4e-23	37.3
WP_009874524.1\|610527_611241_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	6.8e-09	26.4
WP_009874525.1\|611348_611567_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_009874527.1\|611777_611936_+	hypothetical protein	NA	NA	NA	NA
WP_010896171.1\|612154_612685_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010896172.1\|612697_614029_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	2.9e-45	30.1
WP_009874530.1\|614235_614709_+	Hsp20 family protein	H6WG27	Cyanophage	1.2e-06	27.7
WP_009874531.1\|614785_615544_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_010896173.1\|615561_616536_-	elongation factor P--(R)-beta-lysine ligase	A0A1V0SIS0	Klosneuvirus	3.3e-30	31.0
WP_010896174.1\|616607_617105_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.2e-25	40.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_002528

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection