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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_003140 Staphylococcus aureus subsp. aureus N315 plasmid pN315, complete sequence 0 crisprs csa3 0 0 0 0
NC_002745 Staphylococcus aureus subsp. aureus N315, complete genome 12 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 7 1 5 2

Results visualization

1. NC_002745
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_1 188427-188511 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_2 428213-428314 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_3 777160-777242 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_4 818107-818185 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_5 873980-874061 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_6 1618584-1618668 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_7 1653014-1653161 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_8 2054612-2054693 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_9 2070257-2070345 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_10 2206128-2206208 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_11 2218449-2218534 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_002745_12 2326428-2326508 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_002745_1 1.1|188453|33|NC_002745|CRISPRCasFinder 188453-188485 33 NC_002745.2 1348825-1348857 0 1.0
NC_002745_4 4.1|818131|31|NC_002745|CRISPRCasFinder 818131-818161 31 NC_002745.2 311624-311654 0 1.0
NC_002745_8 8.1|2054636|34|NC_002745|CRISPRCasFinder 2054636-2054669 34 NC_002745.2 818106-818139 0 1.0
NC_002745_8 8.1|2054636|34|NC_002745|CRISPRCasFinder 2054636-2054669 34 NC_002745.2 1137084-1137117 0 1.0
NC_002745_4 4.1|818131|31|NC_002745|CRISPRCasFinder 818131-818161 31 NC_002745.2 311569-311599 1 0.968
NC_002745_5 5.1|874004|34|NC_002745|CRISPRCasFinder 874004-874037 34 NC_002745.2 1348824-1348857 1 0.971
NC_002745_6 6.1|1618610|33|NC_002745|CRISPRCasFinder 1618610-1618642 33 NC_002745.2 823665-823697 1 0.97
NC_002745_6 6.1|1618610|33|NC_002745|CRISPRCasFinder 1618610-1618642 33 NC_002745.2 823724-823756 1 0.97
NC_002745_6 6.1|1618610|33|NC_002745|CRISPRCasFinder 1618610-1618642 33 NC_002745.2 1348825-1348857 1 0.97
NC_002745_8 8.1|2054636|34|NC_002745|CRISPRCasFinder 2054636-2054669 34 NC_002745.2 1745319-1745352 1 0.971
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 830909-830939 1 0.968
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 830965-830995 1 0.968
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 831021-831051 1 0.968
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 831077-831107 1 0.968
NC_002745_1 1.1|188453|33|NC_002745|CRISPRCasFinder 188453-188485 33 NC_002745.2 823665-823697 2 0.939
NC_002745_1 1.1|188453|33|NC_002745|CRISPRCasFinder 188453-188485 33 NC_002745.2 823724-823756 2 0.939
NC_002745_1 1.1|188453|33|NC_002745|CRISPRCasFinder 188453-188485 33 NC_002745.2 1437091-1437123 2 0.939
NC_002745_7 7.2|1653121|22|NC_002745|PILER-CR 1653121-1653142 22 NC_002745.2 1137206-1137227 2 0.909
NC_002745_7 7.2|1653121|22|NC_002745|PILER-CR 1653121-1653142 22 NC_002745.2 2054581-2054602 2 0.909
NC_002745_7 7.2|1653121|22|NC_002745|PILER-CR 1653121-1653142 22 NC_002745.2 2054698-2054719 2 0.909
NC_002745_8 8.1|2054636|34|NC_002745|CRISPRCasFinder 2054636-2054669 34 NC_002745.2 1353198-1353231 2 0.941
NC_002745_8 8.1|2054636|34|NC_002745|CRISPRCasFinder 2054636-2054669 34 NC_002745.2 2774105-2774138 2 0.941
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 89940-89970 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 387956-387986 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 651750-651780 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 831133-831163 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 874316-874346 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 1040093-1040123 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 1142685-1142715 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 1348783-1348813 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 1437135-1437165 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 1633248-1633278 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 1950741-1950771 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 2315652-2315682 2 0.935
NC_002745_12 12.1|2326453|31|NC_002745|CRISPRCasFinder 2326453-2326483 31 NC_002745.2 2491006-2491036 2 0.935

1. spacer 1.1|188453|33|NC_002745|CRISPRCasFinder matches to position: 1348825-1348857, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 4.1|818131|31|NC_002745|CRISPRCasFinder matches to position: 311624-311654, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

3. spacer 8.1|2054636|34|NC_002745|CRISPRCasFinder matches to position: 818106-818139, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

4. spacer 8.1|2054636|34|NC_002745|CRISPRCasFinder matches to position: 1137084-1137117, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

5. spacer 4.1|818131|31|NC_002745|CRISPRCasFinder matches to position: 311569-311599, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

6. spacer 5.1|874004|34|NC_002745|CRISPRCasFinder matches to position: 1348824-1348857, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

7. spacer 6.1|1618610|33|NC_002745|CRISPRCasFinder matches to position: 823665-823697, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

8. spacer 6.1|1618610|33|NC_002745|CRISPRCasFinder matches to position: 823724-823756, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

9. spacer 6.1|1618610|33|NC_002745|CRISPRCasFinder matches to position: 1348825-1348857, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

10. spacer 8.1|2054636|34|NC_002745|CRISPRCasFinder matches to position: 1745319-1745352, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

11. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 830909-830939, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

12. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 830965-830995, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

13. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 831021-831051, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

14. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 831077-831107, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

15. spacer 1.1|188453|33|NC_002745|CRISPRCasFinder matches to position: 823665-823697, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

16. spacer 1.1|188453|33|NC_002745|CRISPRCasFinder matches to position: 823724-823756, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

17. spacer 1.1|188453|33|NC_002745|CRISPRCasFinder matches to position: 1437091-1437123, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

18. spacer 7.2|1653121|22|NC_002745|PILER-CR matches to position: 1137206-1137227, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattggtgatccaatttct	Protospacer
********* * **********

19. spacer 7.2|1653121|22|NC_002745|PILER-CR matches to position: 2054581-2054602, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

20. spacer 7.2|1653121|22|NC_002745|PILER-CR matches to position: 2054698-2054719, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

21. spacer 8.1|2054636|34|NC_002745|CRISPRCasFinder matches to position: 1353198-1353231, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

22. spacer 8.1|2054636|34|NC_002745|CRISPRCasFinder matches to position: 2774105-2774138, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

23. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 89940-89970, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

24. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 387956-387986, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

25. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 651750-651780, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

26. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 831133-831163, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

27. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 874316-874346, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

28. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 1040093-1040123, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

29. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 1142685-1142715, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

30. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 1348783-1348813, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

31. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 1437135-1437165, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

32. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 1633248-1633278, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

33. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 1950741-1950771, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

34. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 2315652-2315682, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

35. spacer 12.1|2326453|31|NC_002745|CRISPRCasFinder matches to position: 2491006-2491036, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_002745_11 11.1|2218475|34|NC_002745|CRISPRCasFinder 2218475-2218508 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NC_002745_11 11.1|2218475|34|NC_002745|CRISPRCasFinder 2218475-2218508 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 11.1|2218475|34|NC_002745|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 11.1|2218475|34|NC_002745|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 755279 : 763100 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 775071 : 789712 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1668253 : 1677296 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 1808959 : 1866661 54 Staphylococcus_phage(95.35%) tRNA,protease NA
DBSCAN-SWA_5 1976120 : 2074317 126 Staphylococcus_phage(86.96%) head,holin,terminase,coat,capsid,tail,portal,protease,integrase attL 2056679:2056699|attR 2072338:2072358
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_002745.2|WP_000681968.1|2000745_2000922_-|hypothetical-protein 2000745_2000922_- 58 aa aa NA WHTH_GntR NA 1976120-2074317 yes
NC_002745.2|WP_000990056.1|2001164_2001263_-|hypothetical-protein 2001164_2001263_- 32 aa aa NA WHTH_GntR NA 1976120-2074317 yes