CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_003042	Clostridium perfringens str. 13 plasmid pCP13, complete sequence	1 crisprs	NA	0	1	0	0
NC_003366	Clostridium perfringens str. 13, complete genome	4 crisprs	cas14j,DEDDh,cas2,csa3,cas3,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_003042_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003042_1

54001-54094

Orphan

Consensus_repeat	Method
CTGTCATTTTGACTGTTCTCAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003042_1

>merge|NC_003042|1|54001-54094|CRISPRCasFinder
CTGTCATTTTGAGAGCTGTCATTTTGACTGTTCTCAGAAAAACTAGTATTCATGCTATTTTTCTCAGCACTGTCATTTTGACTGTTCTCAGAAA

>NC_003042|1|1|54001-54094|CRISPRCasFinder
CTGTCATTTTGAGAGCTGTCATTTT	GACTGTTCTCAGAAAAACTAGTATTCATGCTATTTTTCTCAGCA
CTGTCATTTTGACTGTTCTCAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003042.1\|WP_003453416.1\|49505_49856_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_003042.1\|WP_010968281.1\|51098_51584_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197715
NC_003042.1\|WP_010968278.1\|44412_45009_-\|class-D-sortase	unknown	unknown	gnl\|CDD\|320681
NC_003042.1\|WP_010968282.1\|51896_53000_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_003042.1\|WP_010968279.1\|45254_49361_-\|Cys-Gln-thioester-bond-forming-surface-protein	unknown	unknown	gnl\|CDD\|227268
NC_003042.1\|WP_010968283.1\|53113_53560_-\|hypothetical-protein	unknown	unknown	unknown
NC_003042.1\|WP_010968280.1\|49979_51053_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349398
NC_003042.1\|WP_003453329.1\|43354_43591_-\|hypothetical-protein	unknown	unknown	unknown
NC_003042.1\|WP_003453417.1\|43654_43849_-\|hypothetical-protein	unknown	unknown	unknown
NC_003042.1\|WP_003453411.1\|43841_44294_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131922

Protein	Function_ID	Function_description	E-value
NC_003042.1\|WP_003453416.1\|49505_49856_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	6.00804e-21
NC_003042.1\|WP_010968281.1\|51098_51584_-\|hypothetical-protein	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	0.000425981
NC_003042.1\|WP_010968278.1\|44412_45009_-\|class-D-sortase	gnl\|CDD\|320681	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases. Class D sortases are cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). They anchor surface proteins bearing a cell wall sorting signal to peptidoglycans of the bacterial cell wall envelope, which is responsible for spore formation under anaerobic conditions. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical subfamily 2 of class D sortase from Clostridium perfringens (named Cp-SrtD) recognizes the LPQTGS signal motif for transpeptidation. Its catalytic activity is in a metal cation- and temperature- dependent manner. The presence of magnesium appears to enhance Cp-SrtD catalysis towards the LPQTGS signal motif.	1.07737e-39
NC_003042.1\|WP_010968282.1\|51896_53000_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	4.98317e-27
NC_003042.1\|WP_010968279.1\|45254_49361_-\|Cys-Gln-thioester-bond-forming-surface-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	4.84756e-48
NC_003042.1\|WP_010968280.1\|49979_51053_-\|hypothetical-protein	gnl\|CDD\|349398	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins. Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.	6.37251e-22
NC_003042.1\|WP_003453411.1\|43841_44294_-\|hypothetical-protein	gnl\|CDD\|131922	TIGR02875, stage_0_sporulation_protein_A, sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species. [Cellular processes, Sporulation and germination].	6.24752e-09

>NC_003042.1|WP_010968283.1|53113_53560_-|hypothetical-protein
MKEFIINYNNMPLSEFTTIIVKANSVKEAINKFHNEKINSKEMLYDFSDCLDFALEEDYFSFLSKNEGAEYDWYTAMKVYLESNNGFKNKNKFKNLNLDKFIEECWNNIMFNRNIDPNSISLESKEAIYRYLYECVEALNIKKLRVIE
>NC_003042.1|WP_010968282.1|51896_53000_+|helix-turn-helix-domain-containing-protein
MITIDWSKFSENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSIDSLIGLSNEKIIPIPSTDIKNNYDTKESEKTNEENNLEIQKIKQESKKILEKAKRSFSELEMAKKRTDKMYEDFIMAKKRADRMYNEFEISKRQVERIINQFEVSKKRTDKMFEDLEMSKKRTDRMYEELFRTLNREKIINDSILKIKNLSKENKLELLKEKAKENNYEEFTKLKILGKISAGIPHYACEDLIDTIYLPNQFFKPNFEYFGLRIFGDSMNKMFDNDFTIIVRKTNSFINGDIVVAIIGDEATCKEIKQVENYIYLIPHSTNPEHQIQKYKADQVMILGVVEQTIKSILDKIDI
>NC_003042.1|WP_010968281.1|51098_51584_-|hypothetical-protein
MRILDELSEHEKRQLEIMDLYNAGYTYKDIGRIMFMSENTIKGIVKNWIDSLPAPNRERIRKIHRQASFSRRDTRKAIDYEAKKEIGDKAFILKNRSIYNTKRNGDIVLKDESEIGCSVSFDTPRKLINENKEIEYKNLKDEEIKLEVLSFYSRKNRDKLN
>NC_003042.1|WP_010968280.1|49979_51053_-|hypothetical-protein
MSKKLKELMRVIKEHKKTSIGVAVALAIAITGGVSYSILSNTYNKTNNTALSEKINDTKEANKDNIKTDESTKTDEAEATNDEATNESEANKSTPEDGIEVEQTKDGNVIVKDQKTGNIIADSSKGDDVKKVINSKKDAGSSITIKNDKTGKVEKVEDIKDVTATGEGTITIVKPENKPENTENNKPDSSSENKPESKPENNEKEEQPAEQPEETPQPSKPVEKPVEKPTEKPVEQPKNVQYMADMSQQLWSDFNAYRQSKGLNALSWSGKYATWTKNHVEEMAKKNTGSYHVDYPEGGQVTGSNSNKNLTASEILQQFKNSPAHNKNILDDELTEGACAVYKSADGGYYFAIGFDY
>NC_003042.1|WP_003453416.1|49505_49856_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MKFKRNFYKGKVYKGDIFYANLGKRKQGSEQQGIRPVAILQNFGSSFVVAPMTSQVKNKMKVHTEIENSCLEKPSTILLEQITTIYRHQLSEKKGTLTNNEIKRLNRALVISLGLI
>NC_003042.1|WP_010968279.1|45254_49361_-|Cys-Gln-thioester-bond-forming-surface-protein
MSKAKRFKLITTITLIFTFLFTNIKVFAVEITSTDAESYLNYDSPTWGKVLPIGNHRYYVPGDLTTCYCLNTGALNPTGQDYTKEMQVDAGIETILYWGYPAKDGSDWGISADEYRYCTQLAIWAYQKEAGLSRGLVRERLQSGTVPLSKLKPVIDFLVDKAHNKEMPTFFEVSPNDIIAHQEGDYFVSEPIKIKSNYTLSGVKVTIKSASNPELTKDIVIKDMDGNVKDSGYKANESFRVYIPSNAETGDLKVSVKAKVDIPAMLGYMTPEQGIQDMAVSSLDTHSMDKDNIKVSWTGLNGAVQVIKKGDDGKLLTGAKFVLKNANDENVAEATSQDGKAVFNDIKPAEYTIHEVEAPQGYLVTNPVNVTVKPNKVSIAEMTDTQIKGKIQVLKVDEETNTPLQGAEFEITQDGKHIETITTGENGIATSSLLPFGNYLVKEIKAPSKYVLNGEEHPVTISENGKTIEITHTNKIIKGKVAVKKTDSEISDLNLEGAEFTIYDNNKNIVATITTNKDGYAESEPLNYGTYTMQETKAPKGYLLSNKVWDININENDKTYTFDVSNDVIKGKLQIVKVDSENEEKPVEGAGFDVIAVNVNGIKEGTVVDHVVTDKNGFAYTKDLRYGDYKFHETDTPKGYWKSDKEYSFNIAENGKTYVKYIKNSPIQAKVRVIKVDSKDGKPLKGVKFQIRNADTKKLVEFTNFIGIIPMKTTTLETNKNGELVTPQNLAYGNYLLEEVEPLEGYIKVNPIPFKIDENSVLEEIKDLGTIYTQKVSNDRITANMELLKLDKETNKPLENIEFKVTALDGFMKGKTWNLKSDDKGLVSLKGLEYGDYRVDEVKTLWNYVLNKEPIFFSVKENGKTIKLQMTNKKIRGSVELFKFDKDTNRPLEGVKFDLLNGDKKVGTYTTDNTGKITVNNLEAGNYTWVEVEAIDHYNKVDKKYDFNIYKDGQLEKIDVANTVKTGELDFSKTDVTTGDSIDGAKVKITGLEPQNKHINIEFTSSKEGNKFTLPEGKYTFEETLAPEGYRINKEVGTFEIKDGQITKANLKDERKQGDLIFTKTDVTTGKVIEGAKIKITCTEGLSKGKVIDFTSSKDGNKFTLDEGKYTFEETSAPNGYRINKEVGTFEIKDGEITKANLKDERKQGDLEFTKTDVTDGRIIEGAKIKIICVEGLSKGKVIEFTSFKDGNKFTLDEGKYTFEEISAPNGYEINKEVGTFEIKDGEITKANLKDERTTGVLEFTKTDVATGEVLEGAKIKIECLEGLDQGKVIEFTSSKEGNKFTLAKGKYRISETKAPEGYELTTETGEFEITNQGDIITCNLTNKKIEIVKTGSRFDINSLIPLGILLVAGGIGGLFFTKKRKLS
>NC_003042.1|WP_010968278.1|44412_45009_-|class-D-sortase
MKKILVILILIGISLISVASYIDYKDNNIKNDLISNYENNSSIDNSIEKENDNIENKISNEFEYKEETINSKRTNVIGILEIKSIGLKAPIVDGEENLDYVVAKYRNSANFGQVGNVILAGHNNMKGSIFKNLYKVKIGDIIEIKTDNNIYKYKLTERVIVNPSDSSLLTQDISKKEITVITCINRAKERLILKGKII
>NC_003042.1|WP_003453411.1|43841_44294_-|hypothetical-protein
MDKGQDKVIKFYIENSIEIGEFSLEKEVNELLSEFITPYKRSFEAIKIGVILLVNNIEYRNKATKLYEKIAEILDSTYSSIYRSIRYSLDVAYWQGRLKNKSIGEYKFIEPQTKPTPFEFMNMIREQISTKMNRCFVAKSKALKGGDVIG
>NC_003042.1|WP_003453417.1|43654_43849_-|hypothetical-protein
MARGNNRNNVKNPIKETVSMILESKGISYDTWLEEAHMKLIFENLELLNEGLALKKELEGNSGE
>NC_003042.1|WP_003453329.1|43354_43591_-|hypothetical-protein
MDVIDQIKNLLNEAVKWLQILGTPAAALAFGIGGFFQIFGGNEGGRKARPWYIGAGIGLIIILGASAIASFLQSKITF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_003042_1	1.1\|54026\|44\|NC_003042\|CRISPRCasFinder	54026-54069	44	NC_003042	Clostridium perfringens str. 13 plasmid pCP13, complete sequence	54026-54069	1.0
NC_003042_1	1.1\|54026\|44\|NC_003042\|CRISPRCasFinder	54026-54069	44	NC_023917	Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1	54250-54293	1.0
NC_003042_1	1.1\|54026\|44\|NC_003042\|CRISPRCasFinder	54026-54069	44	NC_023918	Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1	54193-54236	1.0

1. spacer 1.1|54026|44|NC_003042|CRISPRCasFinder matches to NC_003042 (Clostridium perfringens str. 13 plasmid pCP13, complete sequence) position: , mismatch: 0, identity: 1.0

gactgttctcagaaaaactagtattcatgctatttttctcagca	CRISPR spacer
gactgttctcagaaaaactagtattcatgctatttttctcagca	Protospacer
********************************************

2. spacer 1.1|54026|44|NC_003042|CRISPRCasFinder matches to NC_023917 (Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1) position: , mismatch: 0, identity: 1.0

gactgttctcagaaaaactagtattcatgctatttttctcagca	CRISPR spacer
gactgttctcagaaaaactagtattcatgctatttttctcagca	Protospacer
********************************************

3. spacer 1.1|54026|44|NC_003042|CRISPRCasFinder matches to NC_023918 (Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1) position: , mismatch: 0, identity: 1.0

gactgttctcagaaaaactagtattcatgctatttttctcagca	CRISPR spacer
gactgttctcagaaaaactagtattcatgctatttttctcagca	Protospacer
********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_003366_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003366_1

334955-335043

Orphan

Consensus_repeat	Method
AGTTTTATATAAATCAATATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003366_1

>merge|NC_003366|1|334955-335043|CRISPRCasFinder
AGTTTTATATAAATCAATATAAATTTAAAATTGCAATTTCAAAAGCTAGATTAGGTACTGATAAAGAGTTTTATATAAATCAATGTAAA

>NC_003366|1|1|334955-335043|CRISPRCasFinder
AGTTTTATATAAATCAATATAAA	TTTAAAATTGCAATTTCAAAAGCTAGATTAGGTACTGATAAAG
AGTTTTATATAAATCAATGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003366.1\|WP_011009710.1\|335080_335758_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NC_003366.1\|WP_011009711.1\|336094_338632_+\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|366376
NC_003366.1\|WP_003464292.1\|328756_329080_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_003453477.1\|350305_351541_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340856
NC_003366.1\|WP_003464244.1\|334576_334873_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_003458352.1\|327068_327317_+\|spore-coat-protein	unknown	unknown	gnl\|CDD\|377935
NC_003366.1\|WP_003460432.1\|351554_352736_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NC_003366.1\|WP_003460439.1\|346987_347800_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NC_003366.1\|WP_011009712.1\|344671_345139_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NC_003366.1\|WP_003464293.1\|332711_332924_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011009705.1\|327852_328587_-\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777
NC_003366.1\|WP_011009713.1\|352850_354284_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340856
NC_003366.1\|WP_003458346.1\|330591_331728_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NC_003366.1\|WP_011009707.1\|331724_332348_+\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NC_003366.1\|WP_003453483.1\|349003_350287_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340856
NC_003366.1\|WP_003464326.1\|329113_329323_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NC_003366.1\|WP_003453475.1\|345778_346525_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
NC_003366.1\|WP_041707981.1\|333044_334355_-\|DUF1576-domain-containing-protein	unknown	unknown	gnl\|CDD\|377881
NC_003366.1\|WP_011009706.1\|329697_330204_+\|CarD-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224248
NC_003366.1\|WP_003453458.1\|347817_348990_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213187

Protein	Function_ID	Function_description	E-value
NC_003366.1\|WP_011009710.1\|335080_335758_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	4.5878e-148
NC_003366.1\|WP_011009711.1\|336094_338632_+\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	gnl\|CDD\|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	7.05958e-109
NC_003366.1\|WP_003453477.1\|350305_351541_+\|glycosyltransferase	gnl\|CDD\|340856	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins. Members of this family may function in teichuronic acid biosynthesis/cell wall biogenesis. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.34702e-58
NC_003366.1\|WP_011009712.1\|344671_345139_-\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	4.9363e-78
NC_003366.1\|WP_003460432.1\|351554_352736_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	2.43573e-120
NC_003366.1\|WP_003460439.1\|346987_347800_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	4.11533e-37
NC_003366.1\|WP_011009713.1\|352850_354284_+\|glycosyltransferase	gnl\|CDD\|340856	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins. Members of this family may function in teichuronic acid biosynthesis/cell wall biogenesis. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	9.92579e-56
NC_003366.1\|WP_003453475.1\|345778_346525_+\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	1.6338e-32
NC_003366.1\|WP_011009705.1\|327852_328587_-\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	6.09383e-133
NC_003366.1\|WP_003458346.1\|330591_331728_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	1.67271e-42
NC_003366.1\|WP_011009707.1\|331724_332348_+\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	1.91888e-90
NC_003366.1\|WP_003453483.1\|349003_350287_+\|glycosyltransferase	gnl\|CDD\|340856	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins. Members of this family may function in teichuronic acid biosynthesis/cell wall biogenesis. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	5.35525e-51
NC_003366.1\|WP_003464326.1\|329113_329323_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	7.95733e-18
NC_003366.1\|WP_041707981.1\|333044_334355_-\|DUF1576-domain-containing-protein	gnl\|CDD\|377881	pfam07613, DUF1576, Protein of unknown function (DUF1576). This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.	9.7509e-64
NC_003366.1\|WP_011009706.1\|329697_330204_+\|CarD-family-transcriptional-regulator	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	2.41836e-14
NC_003366.1\|WP_003453458.1\|347817_348990_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	7.45112e-115
NC_003366.1\|WP_003458352.1\|327068_327317_+\|spore-coat-protein	gnl\|CDD\|377935	pfam07875, Coat_F, Coat F domain. The Coat F proteins, which contribute to the Bacillales spore coat. It occurs multiple times in the genomes it is found in.	2.38946e-13

>NC_003366.1|WP_003464244.1|334576_334873_-|hypothetical-protein
MKNYKDNDENFKLVPMNMKCNQEYSFMPMNKFNSNSMNLNPMINKNSNHSCCCMHNYVMKPSPYNNNYYENQMFPQNHTDNMMVKTLITVKKKSDLFD
>NC_003366.1|WP_041707981.1|333044_334355_-|DUF1576-domain-containing-protein
MKRLPQEYLIHLILYISFIIFAFFLESPKEILNGLYNIISNSDILITDYISIGGFGATVINSALLGLIFILLFYITDTKSTGKSIMSLWFLTGFGMFGKNIINIWPIVLGTFIYSKVKKKPFKDYLVIASLGTALAPTVSQFSFFPGVHPISGAIMGALVGIIVGFILPPIAKNASKIHSGFSLYNVGFAGGIIAIAVMSLMRAVGHDFETNSIWHKGNNILYMLFLFTISAYFIICSLILDKSKKSVLKDQIGINKEHGIFPSDFFSIYGSSCYFNMGVLCIFSTLFVLLINGDLNGPTIGAIFSMAGFGCYGKNLANSVPLIIGASLASLISISDINSPVTVVCILFSTGLAPISSYYGWPYGIIAGFLHIFMVFNIGELHGGLNLYNNGLASGFVAAIIVPVIESLQVTNTKNNLKDSSKRHPISLGIKKEAD
>NC_003366.1|WP_003464293.1|332711_332924_+|hypothetical-protein
MLEKMILSDKECEYLAKSIAGGVLIGLALGAIFNNPQFGFALGGVTGIVASLIYTLVKRAKIKSDKKLIN
>NC_003366.1|WP_011009707.1|331724_332348_+|copper-homeostasis-protein-CutC
MTIKLEACVENYKEGKRAEELGANRIELCDNLAQGGTTPSYGTILQCKKDINIDINVIIRPRGGNFVYSKEELNIMKNDIKLCKDIGVTGVVFGFLKEDNTLDYETTKEFVELAKPLSVTFHMAFDEIENKVDALGKLIDLGVDRVLTKGGLDNAFKNKDTLKELVEHAKDKIIILPGGGVTKDNFLELKDYTNAREFHGTKIVGNL
>NC_003366.1|WP_003458346.1|330591_331728_+|mechanosensitive-ion-channel-family-protein
MKELERLLGRLTIINIKEIIIILVIMIIVLIINKILINNLFKLLMRGARRTKNYLDNNIVRALENPLKLIVSFVGIYSIFKVINLDSLGIDFLSTYKILRVGIIVSIIYFAYNLTLENSLLYSKLHKNDGGNTIVFPFVSIIIRLIILLVGIIIIANEFGLTGFIAGLGVSGVAFALAAQDTCSNLFGGMVIVLDRPFSIGDWIQAGDVEGVVEEITFRSTRIRTFSMAIATVPNSKLANSNIINWTQRKLRRIHFKFTMDCKTPIESIKNSVNKIENMLKKHDKIDKNLIIVSFNELSTYGFGVFIYFYTDEFEYLKYEKLKEEINIKILEILREENVSLMFLNFDFKGFERRSGNCNLENTELESIKNITEEERGV
>NC_003366.1|WP_011009706.1|329697_330204_+|CarD-family-transcriptional-regulator
MFKINDYIMYGTVGVCQVIDITKETLMNNIEKEYYVLSPVYSKYPKKTVIKIPVDNKKISMRTLLSKEDVNSIINSIPETETLWIDNDRQRNDEFKTILRSGNCDDLIVLIRSIYLDKKKRKLDGKKACKGDDEIMQTAEKLINEEFAVILDIRPEEVKSYIKSHIPQ
>NC_003366.1|WP_003464326.1|329113_329323_+|helix-turn-helix-transcriptional-regulator
MKDELILKNKLKISRVEKGLSQQALADLVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEELFYFD
>NC_003366.1|WP_003464292.1|328756_329080_+|hypothetical-protein
MDKNTILEKSRNSRSDEGIEYAESKGRKIGFVIFSLIFLFIILFNLFFSGGNNSVFYAASSMFWIFISTDAFEKFKFTRKKSHLVITIAGGVATIIWLANFIIITLE
>NC_003366.1|WP_011009705.1|327852_328587_-|NAD-dependent-protein-deacylase
MDDKINKLKEIIKNSNNIVFFGGAGVSTESGIPDFRSANGLFNEKLNITFTPEQLVSHSFFERYPEEFFNFYKAKLIYPNSKPNDAHIALAKLEEMGKLKAIVTQNIDGLHQMAGSKNVFELHGSVLRNYCVDCHTFYDEKFILESKGVPKCTKCGGIVKPDVVLYEEPLDDNVIRGAIDAISKADTLIIGGTSLVVYPAAGLINYYFRGKNLVLINKSSTQADSKADLVINDSIGKVLGKVID
>NC_003366.1|WP_003458352.1|327068_327317_+|spore-coat-protein
MQEKEMISDYLAGINASLAGYGGIISQCENQELRETIQNMRNQDEVRQYALFKIAKEKGYYIPAQQATPEEVATVKQQVSQG
>NC_003366.1|WP_011009710.1|335080_335758_-|uracil-DNA-glycosylase
MAAEFNNDWDDLLKDEFKKEYYLNLRKFLINEYKTQKIHPSMYDIFNALKFTPYKDVKVVILGQDPYHGPNQAHGFSFSVKPGVQTPPSLRNMFKELNSDLGCYIPNNGFLESWAKQGILLLNTVLTVREGQANSHKGKGWEIFTDRVIELLNKREEPIVFILWGRNAISKEALITNPIHKIIKSVHPSPLSATRGFFGSKPFSKTNDFLVSINKEPIDWQIPNI
>NC_003366.1|WP_011009711.1|336094_338632_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein
MLLKKLAAILTVASIGATIFTSNKEVMATDSYSKAKEIVSNMTLEEKLGQMIMPDFRMWQEEGAKEPSDLTEINSEVAEVIDKYDLGGVILFAENVKEISQTTTLIHDLQEIAINDEDGNLPLLITLDQEGGIVTRLGEGTNLPGNMALGATRSEKSSYDAGYVIGKELNALGVNVDFAPVLDTNNNPENPVIGVRSISSNPELVGKLGKNIANGIQDQGVAATAKHFPGHGDTSTDSHYGLPMVDKSIEELRETELKPFKIAIENGIDMIMTAHIQFPQIEKDTFISKKDGSQISIPATLSDDIIKGILREEMEYDGVVITDAMNMKAISDHFGELESTKMAINAGIDIILMPTILRNNEDVKKLDYVVNGILDSIKSGEIKEEEITDSAERIVKLKIDRGIIDLKNNTASLEEKIKKAKKTVGSVENRNIERRISEEAITITKNEDNILPLNPKEGEKVLLIAPNESQIHSMKFGINRLIHENSLNNIKLNTYEYNNIGIIDDVLKEKIESSDYIIVASLSSNANHLKPGAWNRDLPRSVIDYGNKLNKDTVLISLRNPYDLAAYDNAKAQVVAYGFKGMDPTEGDTLFPTKSSGPNIPASMGVVFGAVEPKGKLPVDIPSLNNDGTMNTEVNYYDYGHGITNINSLGNVNISMNKKINLGDNFQVKFNLSDFNEIVAGKYRAKIKFQGEKLEFINGKVEFSGDLQTNIIDNNTLEVLINLEEGSLKANEVNFILEFKAIDKAELTSIEITSSELIDEKGRCFKQKYVISEFSIEDNKEDKPLSPDEDKEDEENNEDLENSDDNNKDELPQTGSGVGKEFIFGLGSLSLLVGIGLKSKRFKRK
>NC_003366.1|WP_011009712.1|344671_345139_-|peroxiredoxin
MSIEINKLAPDFKLMGSDGKEHSLSDYKGKNIVLYFYPKDNTAGCTTEACDFRDNIQNFHDLNAIILGVSRDSLASHDKFITKLSLPFVLLSDPDETVCKLYDVIKEKNMCGKKYMGVERSTFLINKEGILIEEFRKVRVKGHIEKVLDKLKEIN
>NC_003366.1|WP_003453475.1|345778_346525_+|peptidylprolyl-isomerase
MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIAFELMSEFAKETGLDKTEEFKDQLNKFAKELLAQMVMKKTLSSVTVTDDEAKAFYEEHKENFVELETVTAKHILVASEEEAKKVEEEIASGSITFEDAANKYSSCPSKEQGGNLGSFSKGMMVPEFEEAAFNLELGVVSAPVKTQFGYHLIKVEDKTEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREKYGVKLA
>NC_003366.1|WP_003460439.1|346987_347800_+|ABC-transporter-permease
MKDWLEIEKSIFSHWRMIFSISKKEFKKEFAGSKLGMAWAIIRPLAMITVFWMIFSTGMRTTSSNVQVNYLVWLVSAYIPWIFISDVIMSGAGSIRVNSFLVKKVKFPVEILPTIRIVISFYTFLILLVISFIIFAVNGNLNLINIPKLIYAIIITIIFLAALSRLLSAWVVMSIDILHGISVFMQFLFWMCPVMWQAGELPVGSSMPWIEKILKLNPLYYLAVLFRDAYLGTHTVSLAYGVYFWVVTIILFIFGSKVFKKFRPEFDDVL
>NC_003366.1|WP_003453458.1|347817_348990_+|ATP-binding-cassette-domain-containing-protein
MSVAIRVKDLTKKYKLYQKRSERLANAFGKEKNIKEFYALKGVSFEISKGECVGIIGHNGAGKSTLLKLLTGVAFPTSGEIEINGRLASMLELGSGFNPELTGMENIYFNGSLNGLTKEEIDGKLKDILEFADIGNFIEQPVKNYSSGMFARLAFAVAINVDPDILIVDEILSVGDVGFQVKCMEKFNEFKKKGKTILYVSHGLGTVKKFCDRAIWLQKGEVVDDGNSVIVVERYYNLNFNPANIEQLKDHKSDIINSIAVKSNTKNVEYLEKLDLEVEYDLISNDLKDPNIVLEFRKTDYEPGTTRGNDQFVCGINSKDNIKNIPFNLGVNKLKVSLNKVNLVAGVYYIDFVLRDGEEEVYRKINGYSFTLNDKYRGEGFLILGHSWGN
>NC_003366.1|WP_003453483.1|349003_350287_+|glycosyltransferase
MSVGRIARRTTEVLKEDGLIEVIKRVLRYIKRRIKDKLDNNALTYRKNYEEANAIFHKILKKEKFKAVVVFDSRVGWNIPLFQRSQHMANELTDDGYLYFYRTSEQFDPHVKTVEKLKDRLYLVNMANFALQNAMFDLLKEYKGHKFLSLYSTDVYLDEQYIKEKYIDNGFKIIYEYIDELSDEISGHLPDFVYDRHKNIIEDKSNIAVGSADKLIEEIEEIRGKENVAMITNGVQYDHWQYRSDEVPEKLKDIVSKGNPIIGYFGALAKWFDYELLKKVAKERPNYEIVLIGFLYDNSFKDSKIDELENVHYLGIVDYKELNQYSQYFTISTIPFLLNDITESTSPVKLFEYMAMGHPIVTTDMRECRKYKSVLIGKSHEDFIEKLDFALTLDKKDEYYNYLKEEALANTWREKAAILDRLIEKNI
>NC_003366.1|WP_003453477.1|350305_351541_+|glycosyltransferase
MSLKRSLKNLLRPILKPMLLKYREKGHEDQKQVFFDEITGAIKNGNYDAIVIFDVYFGFEVKMFQRPQHIALNLAKENVLYFYKASPYVDKDIKTYKKMEENLYLVNTDLYWLQECLIDIVSQSGVPAFGQIYSTSFVEYDSWLKKFTDRNFKIIYEYVDDLSDDIAGFKISDEIKASHKRMLEDTEKVYVVTTADKLYQEAKELRGENKLALVTNGVQYEHFANIDCKKIPDKMKNIVNSKKKIIGYFGALASWFDYDLIKELAEEFKDDYEIVLIGIDYDQSLGKSGILKLDNVHYLGTVNYNELPTYSKFFNVSIIPFVVNEITEATSPVKLFEYMALGKPIVTTALPECRKYESPLVSDSHEDFINNIKKAAELENSKEYIELLRKEGNQNTWRQKAKDIKELILNS
>NC_003366.1|WP_003460432.1|351554_352736_+|ABC-transporter-ATP-binding-protein
MEKAIEVKNLCKNYRVYDSKSSRIRNIINPFAKKEVKEFKALTDVSFHVNKGEIVGIIGNNGAGKSTLLKILTGVSFPSSGEVNVNGRVSSLLELGTGFNPELTGEENIYFNGSLMGLTQDEIDKVKDNIIEFADIGEFINQPVKSYSSGMYARLAFAVAININPDILIVDEILSVGDVGFQKKCMDKFNEFKEAGKTVLYVSHGLETVQTFCERAIWLEKGRVVDIGPSFDIVEKYYDKLMKSDDKEELETGKFVELINVEILDDKKVYKKGESIEFLVEYEVFNPSVKNAGITIEMRKAYREPCEYRNADQFIFSVNSNVDEFTIPWKKGRNKITFKIDSLDVKEGIYYLDAIFSESQNLVALETQEDVVSFEVKNEGESEGFVFLDSTWT
>NC_003366.1|WP_011009713.1|352850_354284_+|glycosyltransferase
MSNIFEVMLKKNIGDFTYEEKRELNNWLIENLKLKELIYSGLELTKVINEDGEETAYYENKITEEDILSGNFNELCSKTSKYIDDAISSILFEGQFNCFYEKIKSILELEDFDEIIVFHASFGWNIEMKQRPQHLAEALSKKKVLYIYRSDVKNDNIYSIKKIKDNLYVLNLDMYSLNVAFFEAIKSINKPKFAHVYATCLNSVDYEKIKTYMDKGFKVIYDFVDELSSEISGYNITSKMIEDHEKLLRDKENVLVVSTAKKLKDIANKFRGENENNILSPNAVNLEDFKNHGNEIGEKIQPIVNKRKPIIGYYGALAKWFDYKLIEQLAKEREDYEIVLIGMDYDGSYDQSNLKNYSNISYLGMIDYKYLINYSRYFDVCIVPFIKNDITDSTSPLKIFEYMALEKPIVTTDINECKNYESCLVSKDYDEFIKNIDKALKLEVDNKEYFNILRREAEENTWDNRAELIKEAIKNLE

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Crispr_ID: NC_003366_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003366_2

1111943-1112145

Orphan

Consensus_repeat	Method
TTTTAAGCAATATTTGTTTTTAGGT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_003366_2

>merge|NC_003366|2|1111943-1112145|CRISPRCasFinder
TTTTAAACAAGCTTTATTTTTTAGGTGCACAGACCATACTTTCTTTTGGCATTACAATAGATGATTTTAAGCAATATTTGTTTTTAGGTCTATTTACGAGCAAATATTAAATAAAATCTAAACTAGATACTTTTAAACAATATTTGTTTTTAGGTGCTAACAGCTTTTTAGTAGTTACTATTAATAGAATATTGATTTTAGGT

>NC_003366|2|2|1111943-1112145|CRISPRCasFinder
TTTTAAACAAGCTTTATTTTTTAGG	TGCACAGACCATACTTTCTTTTGGCATTACAATAGATGA
TTTTAAGCAATATTTGTTTTTAGGT	CTATTTACGAGCAAATATTAAATAAAATCTAAACTAGATAC
TTTTAAACAATATTTGTTTTTAGGT	GCTAACAGCTTTTTAGTAGTTAC
TATTAATAGAATATTGATTTTAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003366.1\|WP_003453956.1\|1108621_1108894_+\|EutN/CcmL-family-microcompartment-protein	unknown	unknown	gnl\|CDD\|377017
NC_003366.1\|WP_041707724.1\|1119160_1119619_+\|4Fe-4S-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379137
NC_003366.1\|WP_003454005.1\|1111441_1111918_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NC_003366.1\|WP_011010117.1\|1121178_1121721_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380316
NC_003366.1\|WP_011010109.1\|1107715_1108474_+\|ethanolamine-utilization-protein	unknown	unknown	gnl\|CDD\|274184
NC_003366.1\|WP_011010112.1\|1115534_1116155_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_003366.1\|WP_003453976.1\|1105720_1106011_+\|ethanolamine-utilization-microcompartment-protein-EutM	unknown	unknown	gnl\|CDD\|132899
NC_003366.1\|WP_003454035.1\|1108895_1109450_+\|BMC-domain-containing-protein	unknown	unknown	gnl\|CDD\|131578
NC_003366.1\|WP_011010111.1\|1113812_1115453_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225110
NC_003366.1\|WP_003451994.1\|1122000_1122627_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_003454092.1\|1106874_1107510_+\|phosphate-propanoyltransferase	unknown	unknown	gnl\|CDD\|237899
NC_003366.1\|WP_011010107.1\|1103886_1105365_+\|acetaldehyde-dehydrogenase-(acetylating)	unknown	unknown	gnl\|CDD\|131570
NC_003366.1\|WP_011010110.1\|1112350_1112896_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_003366.1\|WP_011010116.1\|1119813_1120536_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010113.1\|1116596_1117022_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341244
NC_003366.1\|WP_003453938.1\|1113187_1113499_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_003454016.1\|1109500_1110598_+\|ethanolamine-utilization-protein-EutH	unknown	unknown	gnl\|CDD\|237906
NC_003366.1\|WP_025649041.1\|1117352_1119164_+\|ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236212
NC_003366.1\|WP_003453912.1\|1110600_1111074_+\|DUF861-domain-containing-protein	unknown	unknown	gnl\|CDD\|114941
NC_003366.1\|WP_003453880.1\|1106088_1106865_+\|ethanolamine-utilization-cobalamin-adenosyltransferase	unknown	unknown	gnl\|CDD\|227149

Protein	Function_ID	Function_description	E-value
NC_003366.1\|WP_003453956.1\|1108621_1108894_+\|EutN/CcmL-family-microcompartment-protein	gnl\|CDD\|377017	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome. The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (Structure 2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a hole in the center. this suggests that EutN forms a pore, with an opening of 26 Angstrom in diameter on one face and 14 Angstrom on the other face. EutN is involved in the cobalamin-dependent degradation of ethanolamine.	5.50579e-37
NC_003366.1\|WP_041707724.1\|1119160_1119619_+\|4Fe-4S-cluster-binding-domain-containing-protein	gnl\|CDD\|379137	pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.	3.8018e-08
NC_003366.1\|WP_003454005.1\|1111441_1111918_+\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	8.48351e-99
NC_003366.1\|WP_011010117.1\|1121178_1121721_+\|nitroreductase-family-protein	gnl\|CDD\|380316	cd02139, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	3.429e-56
NC_003366.1\|WP_011010109.1\|1107715_1108474_+\|ethanolamine-utilization-protein	gnl\|CDD\|274184	TIGR02536, putative_ethanolamine_utilization_protein, ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.	1.09012e-73
NC_003366.1\|WP_011010112.1\|1115534_1116155_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.81566e-51
NC_003366.1\|WP_003453976.1\|1105720_1106011_+\|ethanolamine-utilization-microcompartment-protein-EutM	gnl\|CDD\|132899	cd07059, BMC_PduA, 1,2-propanediol utilization protein A (PduA), Bacterial Micro-Compartment (BMC) domain. PduA is encoded within the 1,2-propanediol utilization (pdu) operon along with other homologous carboxysome shell proteins PduB, B', J, K, T, and U. PduA is thought to be required for the formation of the outer shell of bacterial pdu polyhedral organelles which are involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduA might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles, like PduU does, at present no experimental evidence directly supports this view.	4.19683e-40
NC_003366.1\|WP_003454035.1\|1108895_1109450_+\|BMC-domain-containing-protein	gnl\|CDD\|131578	TIGR02526, putative_ethanolamine_utilization_protein, PduT-like ethanolamine utilization protein. This gene shows up in ethanolamine utilization operons in which a proteinaceous coat organelle is also encoded. It is closely related to the PduT protein in propane-diol operons with the same structure.	7.32798e-92
NC_003366.1\|WP_011010111.1\|1113812_1115453_+\|EAL-domain-containing-protein	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	1.18759e-55
NC_003366.1\|WP_003454092.1\|1106874_1107510_+\|phosphate-propanoyltransferase	gnl\|CDD\|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	5.80349e-116
NC_003366.1\|WP_011010107.1\|1103886_1105365_+\|acetaldehyde-dehydrogenase-(acetylating)	gnl\|CDD\|131570	TIGR02518, Acetaldehyde_dehydrogenase_acetylating, acetaldehyde dehydrogenase (acetylating).	0
NC_003366.1\|WP_011010110.1\|1112350_1112896_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.14072e-09
NC_003366.1\|WP_011010113.1\|1116596_1117022_+\|hypothetical-protein	gnl\|CDD\|341244	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase. 2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system.	0.000456095
NC_003366.1\|WP_025649041.1\|1117352_1119164_+\|ribonucleoside-triphosphate-reductase	gnl\|CDD\|236212	PRK08270, PRK08270, ribonucleoside triphosphate reductase.	0
NC_003366.1\|WP_003454016.1\|1109500_1110598_+\|ethanolamine-utilization-protein-EutH	gnl\|CDD\|237906	PRK15086, PRK15086, ethanolamine utilization protein EutH; Provisional.	5.41583e-166
NC_003366.1\|WP_003453912.1\|1110600_1111074_+\|DUF861-domain-containing-protein	gnl\|CDD\|114941	pfam06249, EutQ, Ethanolamine utilisation protein EutQ. The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear.	1.30397e-93
NC_003366.1\|WP_003453880.1\|1106088_1106865_+\|ethanolamine-utilization-cobalamin-adenosyltransferase	gnl\|CDD\|227149	COG4812, EutT, Ethanolamine utilization cobalamin adenosyltransferase [Amino acid transport and metabolism].	1.25082e-69

>NC_003366.1|WP_003454005.1|1111441_1111918_+|glutathione-peroxidase
MEIYDISVKDINGENVSLERYRGKVLLIVNTASKCGFTKQFDGLEELYEKYKDEGFEVLGFPCNQFKEQDPGSNSEIMNFCKLNFGVTFPMFEKIDVNGENESLLYSYLKEQKSGMFGSKIKWNFTKFLVDREGNVIKRFSPQTTPKSIEKDIEELLA
>NC_003366.1|WP_003453912.1|1110600_1111074_+|DUF861-domain-containing-protein
MENISKELLEKLVRQIIEEKLAGAGNNDSVDFIRNKDKSGIMSIKLPTVKVDESNRLDTGNPRDVVYTKDLFTLEESPRLGAGIMEMKETTFDWTLNYDEIDYVIEGHLDIIIDGRKISADAGEIILIPKGSKIQFSVPDYARFIYVTYPADWASQA
>NC_003366.1|WP_003454016.1|1109500_1110598_+|ethanolamine-utilization-protein-EutH
MSINEIIVYIMVACMALGAIDKCLGNKFGIGEQFEEGIMAMGSLALAMVGVICLAPVLASVLGPIVTPVFNALGADPAMFAGSILANDMGGAPLAASLAQDPQAGMFSGLIIGAMMGATIVFTIPVSLGIIEKKDHKFLATGILAGIITIPVGAFVGGLVAGFPAMMVLKNLVPIIIFAILIAIGLAFAEEAMIKGFNIFGKIVVIIITLALAAAIIEALTGFVIIPGMAPITDGIEIVGSIAIVLAGAFPLVYIITKVFKKPLMGLGKILGMNEIAAAGMIASLANNIPMFGMLKDMDDRGKIINVAFAVSASFVLGDHLGFTAGFNPEMIFPMIVAKLVGGITAVILAMFIAKKTLGKIEEAK
>NC_003366.1|WP_003454035.1|1108895_1109450_+|BMC-domain-containing-protein
MKKSIGALEFRSISKGIEVSNEVVKKAFVEVSYLKSICPGKFFLIVNGDAGEVKEAIEFGEKLGEKYLVGSFIINSIHHDIINALKGKYSQKNIEDKAIGIMETGKVSSGILALDKTLKSSEVNLVKLQLAFGIGGKLVYIVSGDLSSVENGMREGQSILQEKDIINVSIIPFVHSEIAKNLIK
>NC_003366.1|WP_003453956.1|1108621_1108894_+|EutN/CcmL-family-microcompartment-protein
MEIGRVVGNVWATRKDEKLNGQKFLIVKLLVSKDKEKEGLFVAADNAGAGIGDIVLITKGGAARQSIGNREVPIDAAIVGIVDSIDIEED
>NC_003366.1|WP_011010109.1|1107715_1108474_+|ethanolamine-utilization-protein
MKGGKDNMDYEKLVEFLVDEIYKRIQEENNKSNSLEKRKSIVVIGESNVSFYREALKGFDINPLTSECKDCDILLISKLCIKGLSNIAQGTCTTKAENFALEMLLKGKKVYILEDGIEYRKYKNTAPKVLYNKYIKFEEELLAYGIEVIDDLNRISIESKDEKVSLSGIKEEISKNLCLCSENKVEGKKDLDTTAIADEFTINLSNKKLVSESDLRKPHINGVRTLIVDKKAIITPLAKDYIRINNLNVVLS
>NC_003366.1|WP_003454092.1|1106874_1107510_+|phosphate-propanoyltransferase
MDNLLQDIIEEVVRRVKDEAFIEVEASGRHVHLTREHIDILFGEGHELTRIKDLSQPGQYACKERVTISGPRGKIDNVVVLGPPRNETQVEVSFTDALVLGSIPPVKLSGDLENTPEITISTERASIALNRGLMVAKRHIHMTPEDAIKFGVSNNESVKVKVLGKRPLIFDDVIVRVSKDYRTFMHIDYDEANACGFSKGTFALIVGKDEK
>NC_003366.1|WP_003453880.1|1106088_1106865_+|ethanolamine-utilization-cobalamin-adenosyltransferase
MAVLTEGEVRKRLSREDLKALKEFKVVKGEIITPSAKSYLAEHNINLVYVNSEEEKLNKETEPKEIIREVVREKEYKYETVFGAKLDEKPEHMTHLTGNLLVFKDHKRIIFRGKIDSLEARIVETQVLCHKQGMNKLVEDLQEILNLIGRILRCEVLSEPLEGFSLQGMTEKDLREKSHNPKKYFGIGHEMPTYEMGEIVAALNILRTLTRETELSAYEAFKGEYGQVEREDLIRALNRLSSVFWIMIFKVRTGKYEK
>NC_003366.1|WP_003453976.1|1105720_1106011_+|ethanolamine-utilization-microcompartment-protein-EutM
MANANALGMIETRGLVGAIEAADAMVKAANVQLVGKEQVGGGLVTVMVRGDVGAVKAATDAGAAAAERVGDLISVHVIPRPHFEVDAILPKAPKAE
>NC_003366.1|WP_011010107.1|1103886_1105365_+|acetaldehyde-dehydrogenase-(acetylating)
MEFLDKDLVSIQETRGLIRKAKEAQSKLARMSQQDIDRIVKAISDAAYENSEKLAKMANEETGFGKWEDKVLKNVFAARTVYESIKDTKTVGIVEENVEKRAFKIMVPVGVVAGLIPSTNPTSTAIYKAMISIKARNAIVLSPHPSAKKCIIETAKIIAKAAERAGCPEGAIGCITVPSIEGTNELMKNKDTSLILATGGEAMVRAAYSSGTPAIGVGPGNGPAFIDKSADVKLAVKRILDSKTFDNGTICASEQSIVVEKAMEDEVVRELKEQGAYFLTEEQANQLSKFVMRANGTMNPQIVGKTPQDIAKLAGLEGIPSWARVLVPRECHVGHKYPFSREKLTTILTFFVEENVDAVLNRCREILLNEGAGHTFCMHANNEELVKRFALEMPVSRMVVNSPGALGGIGATINLVPALTLGCGAVGGSSTSHNIGPLDLMNTRNVAYGIRELEDIRELAVGATKEVSASLDLGDKEELINLLVKKIIEELK
>NC_003366.1|WP_011010110.1|1112350_1112896_+|GNAT-family-N-acetyltransferase
MNLKRINSNDNCFNKAMEIYNGSFPIFERRIMDDQIKALDDTNYHFEVIYDKEEIVGILLYWDMGRYKYIEHFAIDSKLRGKNYGSRVLKEFCDHNKNVILEIDPPIDEISIKRLNFYLKLGFKLQDFDYTHPSYRKGCKRHSLKIMTFNHNMPKEDYDTFNILLKRDIMKYSEFKDRLNN
>NC_003366.1|WP_003453938.1|1113187_1113499_+|hypothetical-protein
MKKVLIGVLVFLICIISVFLFFDREEESIVTDVVEKSQYGLLVNYEDGLIAVDTGDAEIVDRDGKENTLDCINEGDRIEIIYDGKIEETYPAQINNVYKIIIF
>NC_003366.1|WP_011010111.1|1113812_1115453_+|EAL-domain-containing-protein
MKKRVFWVSIVFLIIITVLGITIKFDGKKVNCNRKTVKVGFYEYYPYYYLNKNSMPDGYYNEILELICNKLDLNYKYVDCNVTDALEKLKSGQIDLVFGISKTPDREKEYEFTDHYLNNDNFAIYTNKNIKNGDLKALNGLKMGFLKGEENNEWILRLLKDKGINVKPIYVSNYPEDEEYLYNNKVDFVVENTRSNINYENKNIKKIFEFSSGPVYIVSRKGNEKLIEGIDSVLGELEEDEEQKDANLYSKYFDEHLDKLKNEKLLVVIFLIIISLFIYKKRKNKIFAIRTKRKIRDYMKNDKYILYYQPIVDPKKNRVKGFESLLRLNKDGKILTPYSFIKEIEDNNMSLEVSLWLLKKVILDYRIIKDYDMVKGRDFYISLNVSFKEIENPKFLRSLMKIAKDYKIDDCNICLEIVEKFGMEDIGRIQSAIRIIKEYGFLIAIDDFGVEYSNLDLLNKIDSDIVKLDKYFADNLDKSIINEKTVEFISEICIIANRTIVFEGIEEQYQVDIVKAFPYEKIYIQGYFYSKPVDIETLKDFKFKDS
>NC_003366.1|WP_011010112.1|1115534_1116155_+|flavodoxin-family-protein
MKVLLVNGSPNKEGCTYTALKEVSKTLEENGIDTEIFQVGNKPIGGCIGCGSCKKTGECFMKDGVNEFVEKAKDADGFVFGSPVYYAAASGSITSFLDRAFYSGGKHMAFKPGAVICSARRAGTTSTLDQLSKYLTICNMPVVSSQYWNMVHGNTPEKVKKDLEGMQTMRVLGRNMAWLIKCIELGKNNNILKPELEERERTNFIR
>NC_003366.1|WP_011010113.1|1116596_1117022_+|hypothetical-protein
MESKEMRLAKKAKKLIDEFERVQSVLLSGELSDQEVEIRDDGATIVLKNIMPGYSGEAMFKLTHISDVVKSYIDDMDEENDEMIKSYEVENTNWHESYLGDIYRESAMEHLEKVEVVGDKVRHTYKELKKIEEKAREIEGL
>NC_003366.1|WP_025649041.1|1117352_1119164_+|ribonucleoside-triphosphate-reductase
MYNVSINKRDVKKDVKNMLSSKKIVDDYIKKIDWRVNENSNSPYSFGSLNKHIIAEVSKDYWLNEVYKDKRIIDAYKNGDMHIHDLGGLTLYCCGYSLRNIILMGVQGIPNIPTSSPAKHFDAILNQIANLVTIYQNEIMGAVAFNSFDTLLAPYIKKDNLTYEEVKQNLQNFIFSINSNSRAGAEPAFTNITFDLFPPKDLENDPALIGDKIQEFTYKECQKEMDMLNKAFYELMNEGDYNGRPFSYPIPTYNINSNFDFDNPNNDMLFEMTGKFGYPYFANFVNSDMDQSDVRSMCCRLNLDLRELRKRNGGLFGSGDSTGSIGVVTINLPRLAYKYKNNEKEFFNALKEILIIAKDSLEKKRKWLNDNIINKDMLPAFSTYVGTLKNHFSTIGIVGLNEMCENFNGNNILTEEGMEFSIKVCNFIREELINFQEETGNLYNFEATPAESTCYRLAKKDVEDFEDIIVRGGREYPYYTNSCHMPPNEVKNLKQLFDHQDKLQVLFTGGTVVHIYCDGAISGEKAKHIVKTVCKKYRTPYVSISPLNRYCEEHGYVKERVEECPICGKKLDLYQRITGYLRKVEFFNDGKKSEFKDRNQLSL
>NC_003366.1|WP_041707724.1|1119160_1119619_+|4Fe-4S-cluster-binding-domain-containing-protein
MIIKTKGIVHERVEDAPFMGALISAVDFNLNCKGCFNQHLKDLPNIEMDSEDILDKVTNDPFNEGIILAGLEWSLQPKELREMVNSARKRKLKVIVYSGLSEEEFKKKFPDIYGLKGDMYFKFGKYDEKLKVNNNIQYDVKLATSNQKILKK
>NC_003366.1|WP_011010116.1|1119813_1120536_+|hypothetical-protein
MKDRKASKYHSRSSRVFAPVHINSKGVIDYKLPLCDLMDSILSKKSFNTSVITETLDGNQYYYDYDFDGKNIIVSKSQIIKDSPGLKLIERYKGNYLGKELYNDLVVLVLYKDDKKVTDTISYKKDLGLNVDMVIEVGSYFYRLPLCEFIDNIIRKTPDILNFIYFGFEGDMYYITLEFDGKDINYIKYSVNNSKLDEIEKAIGNRLVKEFSGHNNIILSLYDDNTRVKDIVAYSSKFLY
>NC_003366.1|WP_011010117.1|1121178_1121721_+|nitroreductase-family-protein
MNFFDLVNKRESVRGYLDKEVEKEKIIKIIEAARVAPSACNAQPWKFVVNDKNLVRKIAENLYDPMIGINKFAITSPAFIVVVGEKRNLTSKMGELIKKKDYTSMDIGIASEHLCLAATELGLGTCMMGWFKEKNIKKLINIPTNKEIHLVISLGYYDEKVTRRKIRKNIDEIYSFNKYK
>NC_003366.1|WP_003451994.1|1122000_1122627_+|hypothetical-protein
MVFTINAYKIPLESVYRLKKNNNWEPQEHFLTIDFENDMIFNTHEEAEKWLADNNILFINDEKVNTSEFQLNCYGVENFNIEIVVHRKTKPNIFTEKDVRKVLNEGDDRYNNSLIIDFEGNLKLIQSNPEDIIYHSNYAVSNEVYNSGNGFVGREFSDLYIKYIYLNLLDNWVLHLESGRSIYVTCYEDNINEENTIYKINKLLADMN

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Crispr_ID: NC_003366_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003366_3

1330215-1330324

Orphan

Consensus_repeat	Method
AAATAGTAATTTAGAATCTAATATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003366_3

>merge|NC_003366|3|1330215-1330324|CRISPRCasFinder
AAATAGTAATTTAGAATCTAATATAACAGAAGCTAATAATATTAATTCTAAGCTCTTAGAAAATACTTCTATTGCTACTTCTTTAAATAGTAATTTAGAATCTAATATAA

>NC_003366|3|3|1330215-1330324|CRISPRCasFinder
AAATAGTAATTTAGAATCTAATATAA	CAGAAGCTAATAATATTAATTCTAAGCTCTTAGAAAATACTTCTATTGCTACTTCTTT
AAATAGTAATTTAGAATCTAATATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003366.1\|WP_011010273.1\|1331701_1331944_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010280.1\|1336949_1337537_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010275.1\|1332270_1332474_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010265.1\|1319900_1320500_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273713
NC_003366.1\|WP_011010270.1\|1324848_1327800_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|273743
NC_003366.1\|WP_011010278.1\|1335176_1335464_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010267.1\|1321014_1321350_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010271.1\|1327848_1329723_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293817
NC_003366.1\|WP_003449334.1\|1337650_1337983_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010264.1\|1319534_1319885_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010262.1\|1318763_1319081_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|273692
NC_003366.1\|WP_011010268.1\|1321367_1324169_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NC_003366.1\|WP_011010281.1\|1338111_1339077_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NC_003366.1\|WP_011010276.1\|1332511_1333426_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|133475
NC_003366.1\|WP_011010263.1\|1319081_1319525_+\|HK97-gp10-family-phage-protein	unknown	unknown	gnl\|CDD\|273775
NC_003366.1\|WP_011010277.1\|1334195_1334990_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010279.1\|1335991_1336501_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010266.1\|1320547_1320853_+\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010282.1\|1339125_1339986_-\|triphosphoribosyl-dephospho-CoA-synthase-CitG	unknown	unknown	gnl\|CDD\|132169
NC_003366.1\|WP_011010269.1\|1324149_1324845_+\|phage-tail-family-protein	unknown	unknown	gnl\|CDD\|227066

Protein	Function_ID	Function_description	E-value
NC_003366.1\|WP_011010282.1\|1339125_1339986_-\|triphosphoribosyl-dephospho-CoA-synthase-CitG	gnl\|CDD\|132169	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG. Triphosphoribosyl-dephospho-CoA is transferred to, and becomes the prosthetic group of, the respective acyl carrier protein subunits of both citrate lyase and malonate decarboxylase. Members of this protein family are triphosphoribosyl-dephospho-CoA synthases specifically from citrate lyase systems. This protein sometimes occurs as a fusion protein with CitX, the phosphoribosyl-dephospho-CoA transferase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Fermentation].	2.3147e-140
NC_003366.1\|WP_011010281.1\|1338111_1339077_-\|transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	9.79414e-80
NC_003366.1\|WP_011010262.1\|1318763_1319081_+\|phage-head-closure-protein	gnl\|CDD\|273692	TIGR01563, hypothetical_protein_AGR_C_1752, phage head-tail adaptor, putative, SPP1 family. This family describes a small protein of about 100 amino acids found in bacteriophage and in bacterial prophage regions. Examples include gp9 of phage HK022 and gp16 of phage SPP1. This minor structural protein is suggested to be a head-tail adaptor protein (although the source of this annotation was not traced during construction of this model). [Mobile and extrachromosomal element functions, Prophage functions].	5.79132e-26
NC_003366.1\|WP_011010268.1\|1321367_1324169_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	2.26758e-52
NC_003366.1\|WP_011010265.1\|1319900_1320500_+\|hypothetical-protein	gnl\|CDD\|273713	TIGR01603, Uncharacterized_phage_related_protein, phage major tail protein, phi13 family. This model describes a set of proteins that share low levels of sequence similarity but similar lengths and similar patterns of charged, hydrophobic, and Gly/Pro residues. All members (except one attributed to mouse embryo cDNA) belong to phage of Gram-positive bacteria. Several are identified as phage major tail proteins. Some members of this family have additional C-terminal regions of about 100 residues not included in this model. [Mobile and extrachromosomal element functions, Prophage functions].	1.08482e-61
NC_003366.1\|WP_011010276.1\|1332511_1333426_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|133475	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.	3.49037e-22
NC_003366.1\|WP_011010270.1\|1324848_1327800_+\|phage-tail-protein	gnl\|CDD\|273743	TIGR01665, structural_protein, phage minor structural protein, N-terminal region. This model represents the conserved N-terminal region, typically from about residue 25 to about residue 350, of a family of uncharacterized phage proteins 500 to 1700 residues in length. [Mobile and extrachromosomal element functions, Prophage functions].	2.25182e-96
NC_003366.1\|WP_011010263.1\|1319081_1319525_+\|HK97-gp10-family-phage-protein	gnl\|CDD\|273775	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family. This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions].	2.57312e-27
NC_003366.1\|WP_011010271.1\|1327848_1329723_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	2.16098e-18
NC_003366.1\|WP_011010269.1\|1324149_1324845_+\|phage-tail-family-protein	gnl\|CDD\|227066	COG4722, COG4722, Phage-related protein [Function unknown].	1.57953e-20

>NC_003366.1|WP_011010271.1|1327848_1329723_+|MBL-fold-metallo-hydrolase
MQYIETKTVYIDRDELIEIKAIEHDVKTRFIDFKFIAANKILDISNCIVRVYAITSKGNEIFNNLTIVDGLKGIARLELTDALLVPGTTEYMLKITTDNGGILSSNRFNLIVDKDLMTGNAIEGTNEYKALDEALKTVGELNSMKVNIEKNATNIDKITEKLDYTSERMQDNTETIIYNLKNKEGSYGDCIVIKADDGTFSMIDCFMEENYQVQIQQLDKIGLTKLKYLFITHDHSDHVGNAPKIIEKYRPDFIVYKDGIDYSRLPSVEQEWDTKGYHDRMLAAADKFGVQKIVANDQQFRIGKNDYIEAFASKFYDYSNENNMSVNYLLVSHGTKSLFPGDSTVATETHLQNRIGKIDLYKLSHHGADGGNSDKRFEELQARYCLIDRLDVYKKDIIKNFALKCLKYGGKVYSNDNNDMTVFKIARGTIYPCCHEYKLPLQFLDYYSGKYKMTNEAGGIATKGIYPYKSDFYFVKDDGFIAKNEWIKHDGIDYHASSSGALDRNCFIQGTFNEKPCYYWIDENCKMVIEPKLIYYNNNTYLIKSNTLMAEEEFYEYQANYYYAGKGGALKKNEWLYKDSNYYWLKFNGVMASEETLFIEGKWYDFNGSGVCTNPSAGRDTKAK
>NC_003366.1|WP_011010270.1|1324848_1327800_+|phage-tail-protein
MQYYKIDNYNFVKNGDITLQPIDGKLRLELNTGLNEIEFELGYDKEKRWTRIEEWGVIKTDVFYSKNKQLYRIYNIDKGMFSLKIKARHIFFDLVKHNLLDTRAVACNGQQALERILEGTKYKGHSDIDRINTCYFCVTNIVQAINGENDNSFRNRWGGEMLFDNFDIYINNRIGGDYGVRVNYSRNMEDVNLIIDRDNIVTRAYPRAFDGIMLPEKYIDSPLINKYPIVCEDYIDMSDLKLKDPNTSNDEGFDTEEELYQAMRERMKKLYEGGIDKPSISGNVKVAMLENSIEYKDFKGLVNIGIGDTVTVNHKDIDIDMKTRAITIEWNLVTKKYENIEFGDVEVNYFAKQDIAREQLDNILNKNGTVNAGEMEGIINAMQTKFKALRDVAQPQHTLGMLFEDKIKGSATYGAMAIGSMGFMIASERTEDDKDWNWKTFGSGQGFFADWLVGKLRTVLIENMDGSFQMDLNKPGGMIFKNNGLKSMLIENNALKMFNWKKDEQYIGGLTSLIAGDNKEKPLVGLTNSPKAAINIGYEKKEDTKVVPSYVQFDKYNVLGDEDGKPIRIWEDIDAKGSSVYNINLKSKDDKSWITVKDGELSLKYKDQFLMITDKGITLKGDVILDGVIKNTSGNLVLDPNAPQGGGVDGSDSLRNSVVNSARKLIGKPYVWGGNYPPLGSDVGTDCSGLMQWSYHDNGITLSRTTYTQINEGFEVKENELKPGDLIFMHFTAPNTPQHVFMYSGEKDGQHMCVEAPRTGLNIRERAFTWGSDYRARRIIKDTPGGNVNGNAGTKASKNIIYYVKGIEGYAPYHYYDSVGVKTLGYGMTGSELSGVSVPLSETSATHYLVDNFNRLYYTPVLNMLKARGATNMLQREVDALASFAYNCGLDSNGLGGSQLLKKYVAGERGESIHNEFKKWVHGGGQVLPGLVRRREEEWKIFSGSSSPVGGYNTTPSISYIGTNGLPTGRVVTENGGYGASPY
>NC_003366.1|WP_011010269.1|1324149_1324845_+|phage-tail-family-protein
MLDLLFNLKFLKQDIGVSIVRRSPAILANKNINVINRVGADGDLYEDLGGRKDIIIPVECNFISDNPKEVFRRVKHWLNNIEDNKLIFTDDPGWFYKVVNVEIGQMEVKFKRKGEFTINFTCRGWQYSLDGDEFLEIENNTMLYNEYDLAKPLLYLEGNGEITVTINNNSFSVMLRDFLYIDSELEIAYREKTDCLNIETGDYPLLEYGENNISFNGNVSKIEIKPRWREV
>NC_003366.1|WP_011010268.1|1321367_1324169_+|phage-tail-tape-measure-protein
MAANVKIGANSSDFQKQMKEMTQELKKVSSSFNLANTQAKLFGKSTDLLKSRQSELTSKMQIQNRIIEAQNNNIKKLNGDLDKQKSTQKDLSSKIEETTRKYKESVEATGKNSKESKELAKELKGLKEDYAQNTKAIETNTTKLNNAETKLNNSKKALLENKKALEEVNKELEKSKLDKFTEGLGKAGEKASKISNKMKPASVAITGLGTAAGYAEMKFEDGVANINTLLDDQSHLDGYKNKVIEVSNDTGKSLEDITDGMYTCISSIGDGGEETAKIFETMAKSAKAGGAETNDAVALISAGMKGYNKVNNETAKQISDLAFQTAKLGVTTFPEMASSMKPLFPLSSTLNISMQELFGSMATLTGVTGNTAEVSTQMKAVFSNLIKPTGDMDKLIKKYGYSNGQAMIKAKGLTGVLQILQKETGGQSDKLGKLFSSTEALTAVTALTGTQFDNFKDKTKAMNDALGSTDKALEKINNTTGNDLRTSLNMAKNSLVGFGEVLAPFISMGAKALSTLTKGLQDMSGWQKNLVVGFGATFVGTNLLLGGFSKLSKGLKDNIKFAKDTAKAFKNGASKLKDFAKATKEGTNIIGKFGKGIVNGTKTVASFTKAIILNTAQGIKNGAIWVANKVKMLAYKTAQIAVTGATKAMTLAQKTLNLALSMNPIGVVITLLVALAATFVVLYNKCTWFRNGVNAVWAGVKSVFKGFANFFKGAFSRDWTQTFGLLGIQLNSFFGTVSAIWNGVKGVFTGIITFIKGVFTGNWRSAFQGLADIVKSIFGMLGGIIKAPINAAISGINMAIRGINSLSFNVPSWIPGIGGSHFGVNLPTIPALAEGGIVTKATMALVGEGKEHEAVIPLSKLDKLVSRSVEKVLNAKEDSKDNKPNNNIYEIIIPIDGKTIAKVVIDSMGNILNSNANSRAVVRGGGTNARFAF
>NC_003366.1|WP_011010267.1|1321014_1321350_+|hypothetical-protein
MQLEVFDFFETYIFIRKYVDKIQDRIREIFVGDEVIEKSAFDEYDKEEGYLDEELEEENIYDNYLKVIDNIIQYAIKNFNNSLEATLNMDILDLLDYIEFSINQRNEEEIE
>NC_003366.1|WP_011010266.1|1320547_1320853_+|hypothetical-protein
MQVTIKGKKYESGKILRNKYKVYTEARDRISEKEIYDDSDLDEMVRVIVAIFDNQFTEDDVNNDMDVSDIILNFSSMDFEIVEKVNKKAEKIQKAFMKGKK
>NC_003366.1|WP_011010265.1|1319900_1320500_+|hypothetical-protein
MAEQALKTRRKALKDIYIAIVTKNDATGYTADTPVKLGRAISAKVTVKKSTETTRSDDSIEEIIENSEGTEIEFDVNKLSMEQKAILRGATYKDGMLVYNKDDQAKEVAIGWRAKNTNGKYEFVWHYCGKFNGGWTEDYETEQDKVKTQTAKMKGTFYSREKDGNSCVEIDESYLLEEHTSAKSAIQNWFGQVQEPIEK
>NC_003366.1|WP_011010264.1|1319534_1319885_+|hypothetical-protein
MEEELDIIALVSESLAGLNVDVIEGWYDKELNNTHITVHEYLDQEDDFEDDDASTLEHNLQIDVWSMDSLEAYTLKKKIRKLMKKNEFKYESGQDFYEVDTGIYHKALRFTYLEEI
>NC_003366.1|WP_011010263.1|1319081_1319525_+|HK97-gp10-family-phage-protein
MSSFSMEFTGLEELIKTVEELGTEQDLEKTNKKVLKECGDLAYKTVQPLIHKSRDNSKSGRKGSRPSGHAADNIPQPKSKKIKGRQYVIVGWDKSDNSKYWYMKIEEWGSSQRPPHHSFGKVNKILKKQYDNIAIKEYENLIKKLER
>NC_003366.1|WP_011010262.1|1318763_1319081_+|phage-head-closure-protein
MNNRISIKKLEDKIVNGRRQKGVTSEFYNCWAEILDLYGQELYEAMAIKLENTIVFKIRYCKKLEELRNKENFIVEWQGRKYSIYYPDFMGYNKQYIKLKCKEVL
>NC_003366.1|WP_011010273.1|1331701_1331944_+|hypothetical-protein
MNLRLMFERIIKRGYFPEGKENFGKKLDFMYGLNRLTDDDYAYLVGLLNPVPVVTPLPADHETSSVVVAPTETKVIESQA
>NC_003366.1|WP_011010275.1|1332270_1332474_+|hypothetical-protein
MKYLDLITKLLSIKRIIAFMLTSVFCYMAIVGEIKSTEYITIFATVIAFYFGQSLASRSNNKQGLGE
>NC_003366.1|WP_011010276.1|1332511_1333426_+|N-acetylmuramoyl-L-alanine-amidase
MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGTVYEGRPVWATGANCYGHNHDSIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEVNGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQVTNNNIDIKANAKVINDFLYARDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQWQNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGEFSIF
>NC_003366.1|WP_011010277.1|1334195_1334990_-|hypothetical-protein
MKKLLVALLTGLSLIGLVGCGEAPITPESINTKLDQCIEISNKDAEIQKQYDWAKENNRQFEGVNEFTDDELNTVEYQKFLNLSKAEISVMDNDELKKTNAIVDAVLMMATDDCKEQLIIPYSVSTRDTMIRAYTEPNIIINEMHRIVNELETYKMNVNEFIEVGVPDNWEMIGVMLPESDQSFKEIVDTIEEYNKIYIFDDEYLQIMKELQTSFHNFAEQYPKESYPRTEDSLTLQQARKSFNQAYDKLMMFDIRQAEGVVAP
>NC_003366.1|WP_011010278.1|1335176_1335464_+|hypothetical-protein
MKELNLKSLWIEKKKGDLYYCPKCREYLEKDKFHNSKASKYGITSYCKSCDKIRRRIEFEKRALAEVLGVQRTKEEVNRDKFKKCNKCGETKSIE
>NC_003366.1|WP_011010279.1|1335991_1336501_+|hypothetical-protein
MKTNAINLFNFVLFISFSCIFIKNWFIYKRLFSNESYYINPSIKKDIQKLTLFKFLSVIIQLTVVATLQLILFFYTNKINFFNIAALYFLIYAFNLSISINNDYIYRNFKLIKKSDIDYFNLDYKNNIVKIYLKGKKKPIIIAFKKDLSNLAKLLNKLGYKELLTRKNF
>NC_003366.1|WP_011010280.1|1336949_1337537_+|hypothetical-protein
MDLNKLKQNNIREMEVEECKKEIDRTVRELLAIKEKFYNAQNKVIANENRKIDEFLTEELGFVKDIKENFVDYRLENEEVGKIRIEVCNNYLKIQGKEYRFWLDTDFNLCKLNWAIKEDFGYEHLDRGYKIQGRENWNKELKELMKVKKVYEDTDFELMKLEGDIFYFVIEDKENYRKIKAKSLVDFIKEQLEEL
>NC_003366.1|WP_003449334.1|1337650_1337983_+|hypothetical-protein
MGLFSKNKERKGYTSIDSYLKENNLDNDIKSVTNVNIFFMDGEEEDFYLEDHMLLKFKNFIENPEKDFLVLKYYSSLYSDGFSLEEITLMRHGICRFRIDSEKENILVSD
>NC_003366.1|WP_011010281.1|1338111_1339077_-|transcriptional-regulator
MKFEVNFEDQYNEFLANISNMYYNENKTQSEIAKEFNTTRFKVAKYLQEARDKNIVNIEINHPEIRLSSLEKKFKEQFGLKEAIILKVNNNDASEYAQTLGKTAADYIQTILNDDSIVGLTWGKTLYHSIKNIKASKKLPITVVQPFGTSGKGNISVDTPSLVHLLSDKYDSNYRLLYAPLYIMDDMVRKNLSMELVINQSLLKAKEMDILLTGLGTPEAIYSTLLWKESFLQDEFIKHQAVGAIYGRLYDKEGNFLDTSLNNKVFGIDSDTIKAIENKVCIVTGKFKSVAILGALRGKLINTLITDELTATKVLHLSSIE
>NC_003366.1|WP_011010282.1|1339125_1339986_-|triphosphoribosyl-dephospho-CoA-synthase-CitG
MSINQEVFLEKLNSLIIKSLLYEVSCYPSPGLVSPISNGAHKDMDYYTFLDSISVIGPKFREIAEISMSDIQVSDLLNKIRPIGLKIEEAMFHVTNNINTHKGLIFLMGVVCAATSKAFYEGKPFKEIRNLIKEMTSGLVSKELNLKTNKKNETYGEKIFRLYGITGIRGEVEKGLPAVFDYSLPFYMENKNLKTNERLYLTLFCIMANCEDSTLLHKNDIYVLEEVKKRSQEILNMIHSKEPEIIKEKIFEIDKEFSERGISPGGSADLLAITVFLDGIKKYFPL

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Crispr_ID: NC_003366_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003366_4

2108499-2108611

Orphan

Consensus_repeat	Method
TTCTATTTAAATCTATTACTTTACATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003366_4

>merge|NC_003366|4|2108499-2108611|CRISPRCasFinder
TTCTATTTAAATCTATTACTTTACATAAGAAATTATTCTAATTATTTTTAAAATAATAAATCTTTTTTGGAGTCCTCTTCTTCTCTTCTATTTAAATTTATTACTTTACATAA

>NC_003366|4|4|2108499-2108611|CRISPRCasFinder
TTCTATTTAAATCTATTACTTTACATAA	GAAATTATTCTAATTATTTTTAAAATAATAAATCTTTTTTGGAGTCCTCTTCTTCTC
TTCTATTTAAATTTATTACTTTACATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003366.1\|WP_011010634.1\|2112569_2112998_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|236714
NC_003366.1\|WP_003463484.1\|2105006_2106179_-\|stage-III-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|213743
NC_003366.1\|WP_011010624.1\|2101415_2102249_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|172660
NC_003366.1\|WP_003451187.1\|2102297_2102705_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NC_003366.1\|WP_011010632.1\|2111612_2111903_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_003451410.1\|2102823_2103213_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NC_003366.1\|WP_003458748.1\|2109885_2110233_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_114651178.1\|2103820_2104426_-\|stage-III-sporulation-protein-AG	unknown	unknown	gnl\|CDD\|274319
NC_003366.1\|WP_011010635.1\|2112990_2114010_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NC_003366.1\|WP_003451649.1\|2109157_2109715_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_003366.1\|WP_011010628.1\|2107598_2108483_-\|stage-III-sporulation-protein-AA	unknown	unknown	gnl\|CDD\|274324
NC_003366.1\|WP_041707868.1\|2110629_2111241_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_003458670.1\|2106936_2107452_-\|stage-III-sporulation-protein-SpoAB	unknown	unknown	gnl\|CDD\|131880
NC_003366.1\|WP_003475193.1\|2111215_2111566_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_003451464.1\|2108681_2109044_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010627.1\|2106189_2106576_-\|stage-III-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|131896
NC_003366.1\|WP_003451671.1\|2106663_2106861_-\|stage-III-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131895
NC_003366.1\|WP_011010629.1\|2110229_2110670_-\|hypothetical-protein	unknown	unknown	unknown
NC_003366.1\|WP_011010633.1\|2112037_2112550_-\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NC_003366.1\|WP_003451536.1\|2103297_2103795_-\|SpoIIIAH-like-family-protein	unknown	unknown	gnl\|CDD\|378918

Protein	Function_ID	Function_description	E-value
NC_003366.1\|WP_003463484.1\|2105006_2106179_-\|stage-III-sporulation-protein-AE	gnl\|CDD\|213743	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE. [Cellular processes, Sporulation and germination].	7.7818e-150
NC_003366.1\|WP_011010624.1\|2101415_2102249_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|172660	PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional.	1.95049e-164
NC_003366.1\|WP_003451187.1\|2102297_2102705_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	2.5545e-50
NC_003366.1\|WP_003451410.1\|2102823_2103213_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	5.69298e-30
NC_003366.1\|WP_114651178.1\|2103820_2104426_-\|stage-III-sporulation-protein-AG	gnl\|CDD\|274319	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG. [Cellular processes, Sporulation and germination].	1.41546e-69
NC_003366.1\|WP_011010635.1\|2112990_2114010_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	2.88772e-50
NC_003366.1\|WP_003451649.1\|2109157_2109715_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	2.22205e-107
NC_003366.1\|WP_011010628.1\|2107598_2108483_-\|stage-III-sporulation-protein-AA	gnl\|CDD\|274324	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. [Cellular processes, Sporulation and germination].	2.26285e-161
NC_003366.1\|WP_011010634.1\|2112569_2112998_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|236714	PRK10557, PRK10557, prepilin peptidase-dependent protein.	0.0087873
NC_003366.1\|WP_003458670.1\|2106936_2107452_-\|stage-III-sporulation-protein-SpoAB	gnl\|CDD\|131880	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB. [Cellular processes, Sporulation and germination].	1.85407e-76
NC_003366.1\|WP_011010627.1\|2106189_2106576_-\|stage-III-sporulation-protein-AD	gnl\|CDD\|131896	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD. Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment and the scoring cutoff thresholds for the model have been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream. [Cellular processes, Sporulation and germination].	3.59319e-33
NC_003366.1\|WP_003451671.1\|2106663_2106861_-\|stage-III-sporulation-protein-AC	gnl\|CDD\|131895	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown. [Cellular processes, Sporulation and germination].	1.97477e-14
NC_003366.1\|WP_011010633.1\|2112037_2112550_-\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	0.00412958
NC_003366.1\|WP_003451536.1\|2103297_2103795_-\|SpoIIIAH-like-family-protein	gnl\|CDD\|378918	pfam12685, SpoIIIAH, SpoIIIAH-like protein. Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function that in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.	3.45938e-23

>NC_003366.1|WP_011010628.1|2107598_2108483_-|stage-III-sporulation-protein-AA
MKEIFAVLPDKINSCLKDKSNLNKLQEIRVKVGKPLNIVLDNTETIFNYVIRREDVKAIIQKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRNITSLNIRVCREIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGLKGKRTVVIDERSEIAACYNGIPQMNVGMRTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDMEGLMMAYNSGVSIIATLHGRNVEELYRRPVFREIVENNIINKVVVLSGKKGIGTIEGIYNV
>NC_003366.1|WP_003458670.1|2106936_2107452_-|stage-III-sporulation-protein-SpoAB
MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIALKAKSPIKELFNEISFKLKNNEVENVYMAFKESINEHKKEMNLRNKDFEILLDLSKSLGETNVEGQIKIFNLAKEKLDIELEIAEDECNKNTKVYRYLGVAVGAMIAIFLV
>NC_003366.1|WP_003451671.1|2106663_2106861_-|stage-III-sporulation-protein-AC
MSDLSLIFQIAGVGIVLVILDKVLDQSGKKEYATLANIVGVVIILTMMIQLISRLFSSVKSMFLF
>NC_003366.1|WP_011010627.1|2106189_2106576_-|stage-III-sporulation-protein-AD
MDVVIQVISFVLISLFLYLVLKDNKSTFAVFLLLGAGIVIFLFVMPYVNEIIAFMQDIARESGMDSSYIAIVMKIIAIAYLSTFCSYICNDAGVTLLGKKVEFTGKIMILLLAIPIMANILNSILSIM
>NC_003366.1|WP_003463484.1|2105006_2106179_-|stage-III-sporulation-protein-AE
MKKLINIILLSLIFVFCFNLKVLANDNLESSKEKIDNDSRIERFYDYINNLETEEDILGNMSAKEYIMNYLESGEDPITLKKIGASILSYIFRELNIVLKFIASILVIALLSALLKNLQDAFNIEEGVTQIAFFACYALLIMLLTKSFFISLNLGKEVLTSIIDFMNVIVPVIVMLIATSGGVTSAVTIDPIVLGAVSITPRIYTYFLFPLILAYFTLQFVNNLSSEFKIDRMCKFIKQVVMISQGFILTIFVGILTLRGMTADTLDAVAVKTVKFAVDNFVPIVGKAFSDAITTVAGYSLAMKSVITSLGVIVLVVIVIYPIIKIGLMAICFKLTSAVIEPVVDSKISSSVETVGEALFMIMSCIISVSIMFFIMASMMATAGNFIVGG
>NC_003366.1|WP_114651178.1|2103820_2104426_-|stage-III-sporulation-protein-AG
MQGFKDKMSKILKQKNITNLIILLLLVIMFYLVVSYFTGVNNITKSEKTNLEKVSKEDMNSNSQKDSEVLSYQEKQEKDLERILGKINGVGSVDVVINFQSSEVKVPAVDNSSQKSTTEETDSEGGTRVNSQETDGDKIVMSNSSNGSEPVILKTEKPEVLGVMVVAEGAEDSKIKYEITKAISSLYNISVDKVNVLAMKK
>NC_003366.1|WP_003451536.1|2103297_2103795_-|SpoIIIAH-like-family-protein
MNRKQAGIILTLLALIVCTGVLATRVNNQIKESMGEVPTAFGENDDNATETSSNYFYESRNLREQKDSKTIDNLKAIVEDKNTSAEQKEEAEKELTEKTMARDYETRIELSIKSKGYEDVICFIDGDNAKVVVKTNEELTQEKMVEIQDIVMNVSKVYDVDIEKK
>NC_003366.1|WP_003451410.1|2102823_2103213_-|Asp23/Gls24-family-envelope-stress-response-protein
MNEMNRDEANLGIVNISDEVIGVVAGIAASEIDGILEINHNNSTGIGHKFSKKSLGKGIKVNVENGEAVIEIGVTVQYGIKIPDVVSQVQENVRRTVEAITGLKVALVNIYVQNIIILKEEDKNEILKK
>NC_003366.1|WP_003451187.1|2102297_2102705_-|transcription-antitermination-factor-NusB
MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEKLDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSVSFINGVLDKVYKNMQ
>NC_003366.1|WP_011010624.1|2101415_2102249_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MDKILSGKTVAIDIKGQIKSYTEELKASGKSLKISSILVGDDGGSVYYQNFQEKLANNLGIDFEKIKLDESISEENLKLKIEELNKDDSVNGIMLLLPLPKHIDERAVTNLIDADKDLDCLSEVSVGRFYKGEKCFMPCTPNSVITLLKAYNIEIEGKEVVIIGRSNIVGKPLFQMFLNENATVTVCHSRTKNLKEVCKRADILVVAIGRANFIDSSYVREGAVVIDVGTSEVNGKITGDVNFDDVYDKASLITPVPGGVGSLTTTLLLKNVCKELD
>NC_003366.1|WP_003451464.1|2108681_2109044_-|hypothetical-protein
MKDIKNNISNLLKAMDKNTELDKEFKDSLLNVISSLVDKVEELQVNVETLDENVNLLNDDLSGVQDELFEELTLEELEEYDDEYCEVVCDKCHKPIYIEKDILNRSESIPCPYCGNEFEV
>NC_003366.1|WP_003451649.1|2109157_2109715_-|elongation-factor-P
MISGSDLRKGTTFELDGQVYTVIDFLHVKPGKGAAFVRTKLRNVIMGGVTDRTFNPTDKLQEAIIERKEMQYLYSDGELYYFMDQETFEQIPLNHEKVEDAIKFLKENMNAVIKFYKGEAFSVEAPNFVELLITECEPSVKGNTATTAMKTAVVETGATVMVPMFVEEGNTIRIDTRTGEYMERV
>NC_003366.1|WP_003458748.1|2109885_2110233_-|hypothetical-protein
MKKLKLDVTLATIFIVILLVQGIELFQLRNYEIPVLTNSIGEMDLNTVLKNIENKDCTVLQLEYKEGWIGKVLFTGSLEDLSNYVNLLKNNNINIKNYKIEKSEELRCFLELKVV
>NC_003366.1|WP_011010629.1|2110229_2110670_-|hypothetical-protein
MRLEVRRIYIKKYKNFLPIEYVEEYNRKIKKKLNIYILFLLLFNLFFYGKIKTENNKIKNYLSEIKGVNMERSLDKEFLEDINKLKEIIKDEKILNLNLERKSFELEVNSIYKNSLINYINKINGRVYDISLNESNNTYRLKGELR
>NC_003366.1|WP_041707868.1|2110629_2111241_-|hypothetical-protein
MLIKTLVINDTNDISKLKELKDKRVKFILLNEKIFIEILRVDKKCDVEEKIEQLIRDRFFNYTPLVHYEVLKYNKSLFLIVYFIGCDERFKSLLYERKDFSLTFPELKNKNILSFKKATFELKNLKISIYIKGKLVLLKSVKDSNIIEVIEESLKGLEKDFGVSLKDFTFKIQKEYLKEEIKEWFKGLKLNEIRGEENLYQKI
>NC_003366.1|WP_003475193.1|2111215_2111566_-|hypothetical-protein
MIVTILMDNSFQRRKELDRSFKIIGSNIDKNNSEEQFLKYMLKEKILNKDTFQELKFSLNNMKAEYSKKARILNIKNKDKISGLSRDTYYEIKVINDDIILSKRGNYEFVNKDLSN
>NC_003366.1|WP_011010632.1|2111612_2111903_-|hypothetical-protein
MYLNHRFWDNMVEDIKINKDEDYIVVKFWRKGIVEENKIEKKEDKLHVYYISSGENRNHILIENVEEFDVVEKKNLFYIKLKVKNQEERIYCYEKA
>NC_003366.1|WP_011010633.1|2112037_2112550_-|type-II-secretion-system-protein
MEDKIYKKKGYLLVDMVLALALISILFLGIGKSYSTYINNNYYIKEKIKVAEIINSLAMELKHNISFEDLRSIESGTYKISSLNVNDLINNDIKEFLVKNLILHNKNHNDLGWTINISHFDQYESIINIIYKSEKPYISENKEVKIYKFLEKSFQNLENQPQKEKEKHIY
>NC_003366.1|WP_011010634.1|2112569_2112998_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MYSKRKGFTLSEVIIYLAITSLILAIPTSFMIIKDRGYELKVEGEISKIHDFLMEAKQLSKKDNLYGEIIFDILDNKLIYENALRTTSLRLNAVKVSFNRNNLITINDTGMISIAGTITIIDKNNKQREITIVPGIWKINVK
>NC_003366.1|WP_011010635.1|2112990_2114010_-|type-II-secretion-system-F-family-protein
MFGFKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKKYKESLKRIERKVLNGEALSKAFKEEGNLYPDLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVSLLIGLIIMIFGYVTYILPQFVDMYELREIEGSKIMTLLNNYINFVEENPNVEVIVFCYFSCALISLYLLFKVIPSEKILEKIEVYRMYYEIRILFLINMILNSGISLNNSLSVFGESLSDVKLRKYIKSINEELIKGTTLSSSIGKINVISHVSKGFLITGEESGLFSKNIEELLKIREKDFDRALNKTVGKIEPAMFIILGFVISAMMLLVLVPTFEGMKYV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003366_3	3.1\|1330241\|58\|NC_003366\|CRISPRCasFinder	1330241-1330298	58	NZ_MK275620	Clostridium perfringens strain JXJA17 plasmid p2, complete sequence	32008-32065	1	0.983
NC_003366_3	3.1\|1330241\|58\|NC_003366\|CRISPRCasFinder	1330241-1330298	58	JQ660954	Clostridium phage PhiS63, complete genome	17686-17743	1	0.983

1. spacer 3.1|1330241|58|NC_003366|CRISPRCasFinder matches to NZ_MK275620 (Clostridium perfringens strain JXJA17 plasmid p2, complete sequence) position: , mismatch: 1, identity: 0.983

cagaagctaataatattaattctaagctcttagaaaatacttctattgctacttcttt	CRISPR spacer
cagaagctaataatattaattctaagctcttagaaaatacttctactgctacttcttt	Protospacer
*********************************************.************

2. spacer 3.1|1330241|58|NC_003366|CRISPRCasFinder matches to JQ660954 (Clostridium phage PhiS63, complete genome) position: , mismatch: 1, identity: 0.983

cagaagctaataatattaattctaagctcttagaaaatacttctattgctacttcttt	CRISPR spacer
cagaagctaataatattaattctaagctcttagaaaatacttctactgctacttcttt	Protospacer
*********************************************.************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

842637 : 855225

Synechococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011009968.1\|842637_843288_+	aminotransferase	A0A1B1P8C0	Bacillus_phage	3.2e-13	30.1
WP_003456962.1\|843790_845101_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_003457110.1\|845338_849139_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	4.7e-32	24.9
WP_003453078.1\|849449_849929_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.6e-28	47.4
WP_003456948.1\|849928_850636_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	2.8e-47	43.8
WP_011009969.1\|850657_852103_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.4e-56	33.0
WP_011009970.1\|852103_853105_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	3.9e-71	49.0
WP_011009971.1\|853092_853707_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.7e-22	35.1
WP_011009972.1\|853719_855225_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.2e-66	47.2

DBSCAN-SWA_2

1294598 : 1356737

Clostridium_phage(68.0%)

plate,portal,protease,capsid,head,terminase,tRNA,integrase,tail

attL 1289253:1289271|attR 1306655:1306673

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1289253:1289271	attL	NA	NA	NA	NA
WP_003449335.1\|1294598_1295942_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_011010232.1\|1296397_1298011_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_011010233.1\|1298198_1299215_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	1.6e-19	23.4
WP_011010234.1\|1299872_1300172_+	hypothetical protein	NA	NA	NA	NA
WP_011010235.1\|1300312_1300525_-	helix-turn-helix transcriptional regulator	Q331Y7	Clostridium_botulinum_C_phage	1.2e-14	55.2
WP_011010236.1\|1300711_1301176_+	hypothetical protein	NA	NA	NA	NA
WP_011010237.1\|1301200_1301503_+	hypothetical protein	NA	NA	NA	NA
WP_011010238.1\|1301593_1302286_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011010239.1\|1302322_1302556_+	hypothetical protein	NA	NA	NA	NA
WP_011010240.1\|1302600_1303431_+	hypothetical protein	NA	NA	NA	NA
WP_041707762.1\|1303509_1306695_+	hypothetical protein	NA	NA	NA	NA
1306655:1306673	attR	NA	NA	NA	NA
WP_122359492.1\|1306872_1307226_+	hypothetical protein	NA	NA	NA	NA
WP_011010243.1\|1307240_1307561_+	hypothetical protein	NA	NA	NA	NA
WP_011010244.1\|1307574_1307745_+	hypothetical protein	NA	NA	NA	NA
WP_011010245.1\|1307774_1308695_+	hypothetical protein	NA	NA	NA	NA
WP_011010246.1\|1309064_1309247_+	hypothetical protein	NA	NA	NA	NA
WP_011010247.1\|1309448_1309904_+	hypothetical protein	NA	NA	NA	NA
WP_011010248.1\|1310118_1311216_+	hypothetical protein	A0A0E3T6E1	Bacillus_phage	9.7e-23	48.4
WP_011010250.1\|1311382_1311649_+	hypothetical protein	NA	NA	NA	NA
WP_011010251.1\|1311687_1312071_+	hypothetical protein	NA	NA	NA	NA
WP_122359490.1\|1312033_1312252_+	hypothetical protein	A0A1J0MGC7	Staphylococcus_phage	3.3e-07	52.7
WP_011010253.1\|1312257_1312500_+	hypothetical protein	NA	NA	NA	NA
WP_011010254.1\|1312559_1312970_+	HNH endonuclease	A0A0A7RUV1	Clostridium_phage	3.3e-24	43.1
WP_041707768.1\|1313081_1313567_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_011010256.1\|1313566_1315243_+\|terminase	terminase large subunit	A0A0A7RUM0	Clostridium_phage	4.9e-183	57.1
WP_011010258.1\|1315441_1316665_+\|portal	phage portal protein	A0A0A7RUE7	Clostridium_phage	5.4e-22	27.0
WP_011010259.1\|1316639_1317242_+\|head,protease	HK97 family phage prohead protease	Q8SBP9	Clostridium_phage	4.6e-35	45.1
WP_011010260.1\|1317278_1318415_+\|capsid	phage major capsid protein	A0A0A7S154	Clostridium_phage	3.6e-73	42.3
WP_011010261.1\|1318477_1318771_+\|head,tail	phage head-tail connector protein	I2E8V5	Clostridium_phage	1.4e-21	58.1
WP_011010262.1\|1318763_1319081_+\|head	phage head closure protein	I2E8V6	Clostridium_phage	8.4e-44	75.2
WP_011010263.1\|1319081_1319525_+	HK97 gp10 family phage protein	I2E8V7	Clostridium_phage	1.5e-51	65.7
WP_011010264.1\|1319534_1319885_+	hypothetical protein	Q8SBP4	Clostridium_phage	1.3e-37	67.5
WP_011010265.1\|1319900_1320500_+	hypothetical protein	Q8SBP3	Clostridium_phage	2.0e-70	67.7
WP_011010266.1\|1320547_1320853_+	hypothetical protein	Q8SBP2	Clostridium_phage	4.6e-23	53.5
WP_011010267.1\|1321014_1321350_+	hypothetical protein	NA	NA	NA	NA
WP_011010268.1\|1321367_1324169_+\|tail	phage tail tape measure protein	Q8SBP1	Clostridium_phage	6.4e-196	68.8
WP_011010269.1\|1324149_1324845_+\|tail	phage tail family protein	Q8SBP0	Clostridium_phage	9.0e-75	57.3
WP_011010270.1\|1324848_1327800_+\|tail	phage tail protein	Q8SBN9	Clostridium_phage	6.7e-220	53.4
WP_011010271.1\|1327848_1329723_+	MBL fold metallo-hydrolase	I2E8W4	Clostridium_phage	8.2e-264	80.6
WP_011010272.1\|1329738_1331685_+\|plate	BppU family phage baseplate upper protein	I2E8W5	Clostridium_phage	6.0e-100	40.1
WP_011010273.1\|1331701_1331944_+	hypothetical protein	NA	NA	NA	NA
WP_011010275.1\|1332270_1332474_+	hypothetical protein	NA	NA	NA	NA
WP_011010276.1\|1332511_1333426_+	N-acetylmuramoyl-L-alanine amidase	A0A0A7RVQ3	Clostridium_phage	5.4e-27	38.1
WP_011010277.1\|1334195_1334990_-	hypothetical protein	NA	NA	NA	NA
WP_011010278.1\|1335176_1335464_+	hypothetical protein	NA	NA	NA	NA
WP_011010279.1\|1335991_1336501_+	hypothetical protein	NA	NA	NA	NA
WP_011010280.1\|1336949_1337537_+	hypothetical protein	NA	NA	NA	NA
WP_003449334.1\|1337650_1337983_+	hypothetical protein	NA	NA	NA	NA
WP_011010281.1\|1338111_1339077_-	transcriptional regulator	NA	NA	NA	NA
WP_011010282.1\|1339125_1339986_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_011010283.1\|1340263_1341301_+	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_011010284.1\|1341324_1341630_+	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_011010285.1\|1341617_1342508_+	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_003449389.1\|1342511_1344071_+	citrate lyase subunit alpha	NA	NA	NA	NA
WP_011010286.1\|1344089_1344602_+	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_011010287.1\|1344642_1345788_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_003475696.1\|1345808_1347149_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_003449375.1\|1347517_1349752_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	3.5e-176	44.9
WP_011010288.1\|1350037_1350745_+	pyruvate formate lyase-activating protein	D5JFS4	Klebsiella_phage	2.3e-09	30.5
WP_011010289.1\|1351006_1353736_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-49	24.8
WP_011010290.1\|1353762_1355787_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	3.2e-72	31.2
WP_011010291.1\|1355804_1356737_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA

DBSCAN-SWA_3

1750110 : 1760279

Clostridium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003457240.1\|1750110_1750614_-	QueT transporter family protein	E7DN70	Pneumococcus_phage	1.1e-13	37.2
WP_011010475.1\|1750938_1751814_-	MBL fold metallo-hydrolase	Q332C0	Clostridium_botulinum_C_phage	8.2e-65	50.2
WP_011010476.1\|1751984_1753307_-	sensor histidine kinase	X5JAC0	Clostridium_phage	4.7e-72	37.6
WP_003449818.1\|1753300_1754011_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	3.3e-32	31.8
WP_011010477.1\|1754149_1755163_-	N-acetylmuramoyl-L-alanine amidase	Q8SBN4	Clostridium_phage	3.2e-121	64.2
WP_003455890.1\|1755259_1755547_-	thiamine-binding protein	NA	NA	NA	NA
WP_003465545.1\|1755770_1756784_-	DUF348 domain-containing protein	A0A143FMI2	Bacillus_phage	3.5e-19	52.0
WP_003455941.1\|1757209_1758508_-	uracil permease	Q9KX94	Enterobacteria_phage	3.6e-69	39.3
WP_003456099.1\|1758695_1760279_+	ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	8.5e-44	25.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003042

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_003366

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection