CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_003273	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120delta, complete sequence	0 crisprs	RT,Cas9_archaeal	0	0
NC_003240	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120beta, complete sequence	0 crisprs	cas3,csa3	0	1
NC_003270	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120epsilon, complete sequence	0 crisprs	NA	0	0
NC_003267	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120gamma, complete sequence	0 crisprs	Cas14c_CAS-V-F	0	0
NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	1 crisprs	cas14j,Cas14u_CAS-V,cas14k,Cas14c_CAS-V-F,RT,Cas9_archaeal,c2c9_V-U4	1	3
NC_003241	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120zeta, complete sequence	0 crisprs	NA	0	0
NC_003272	Nostoc sp. PCC 7120 = FACHB-418, complete genome	23 crisprs	cas1,cas2,csa3,Cas9_archaeal,Cas14c_CAS-V-F,cas3,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas6,cas14j,WYL,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas4,cas14k,c2c9_V-U4,c2c5_V-U5,RT,DinG	14	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

74006 : 80941

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010993907.1\|74006_74390_+	single-stranded DNA-binding protein	A0A0R6PHK0	Moraxella_phage	2.1e-12	32.4
WP_010993908.1\|74463_74883_+	hypothetical protein	NA	NA	NA	NA
WP_010993909.1\|75020_75791_+	ParA family protein	A0A240F4U1	Ochrobactrum_phage	1.3e-18	30.7
WP_010993910.1\|75787_76735_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	1.1e-09	36.5
WP_010993911.1\|76892_78293_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	9.2e-26	31.1
WP_010993912.1\|78289_78985_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-23	31.0
WP_010993914.1\|79846_80941_+	cysteine synthase family protein	A0A1X9I5F1	Streptococcus_phage	4.6e-49	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_003272

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CRISPR-Cas detection and classification

Crispr_ID: NC_003272_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_1

19208-19303

Orphan

Consensus_repeat	Method
TGGGAAAGAATTTTTCCTATACCCAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_1

>merge|NC_003272|1|19208-19303|CRISPRCasFinder
TGGGAAAGAATTTTTCCTATACCCAGTCTCAGTTTAGGAACTGGGGATTAGGGACTGGGGATTAGGGATTGGGAAAGAATTTTCCTATACCCAGTC

>NC_003272|1|1|19208-19303|CRISPRCasFinder
TGGGAAAGAATTTTTCCTATACCCAGTC	TCAGTTTAGGAACTGGGGATTAGGGACTGGGGATTAGGGA
TTGGGAAAGAATTTTCCTATACCCAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010994203.1\|22722_22944_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994187.1\|8323_9079_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|176987
NC_003272.1\|WP_096637171.1\|12727_13521_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_003272.1\|WP_010994199.1\|20165_20654_+\|allophycocyanin-subunit-beta	unknown	unknown	gnl\|CDD\|164493
NC_003272.1\|WP_044522640.1\|9131_9593_-\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159
NC_003272.1\|WP_010994191.1\|11846_12275_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373945
NC_003272.1\|WP_010994190.1\|11559_11850_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994185.1\|7358_7850_-\|F0F1-ATP-synthase-subunit-B'	unknown	unknown	gnl\|CDD\|235999
NC_003272.1\|WP_010994197.1\|15777_19176_+\|phycobiliprotein-ApcE	unknown	unknown	gnl\|CDD\|164495
NC_003272.1\|WP_044522641.1\|24367_28033_+\|Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238121
NC_003272.1\|WP_010994200.1\|20869_21076_+\|phycobilisome-linker-polypeptide	unknown	unknown	gnl\|CDD\|366605
NC_003272.1\|WP_010994205.1\|23448_23844_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994201.1\|21220_22039_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225464
NC_003272.1\|WP_010994207.1\|28284_30057_+\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|223963
NC_003272.1\|WP_010994189.1\|10129_11329_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_003272.1\|WP_010994186.1\|7995_8241_-\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|177001
NC_003272.1\|WP_010994204.1\|23017_23263_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994194.1\|13599_14121_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994202.1\|22143_22584_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NC_003272.1\|WP_010994198.1\|19614_20100_+\|allophycocyanin-subunit-alpha	unknown	unknown	gnl\|CDD\|164492

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010994187.1\|8323_9079_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|176987	CHL00046, atpI, ATP synthase CF0 A subunit.	2.00225e-150
NC_003272.1\|WP_096637171.1\|12727_13521_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.96832e-31
NC_003272.1\|WP_044522640.1\|9131_9593_-\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	1.93706e-05
NC_003272.1\|WP_010994191.1\|11846_12275_+\|hypothetical-protein	gnl\|CDD\|373945	pfam15565, Imm30, Immunity protein 30. A predicted immunity protein with a mostly alpha-helical fold and a conserved DxG motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-SHH family of HNH/Endonuclease VII fold nucleases.	1.57029e-28
NC_003272.1\|WP_010994185.1\|7358_7850_-\|F0F1-ATP-synthase-subunit-B'	gnl\|CDD\|235999	PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.	9.44539e-54
NC_003272.1\|WP_010994197.1\|15777_19176_+\|phycobiliprotein-ApcE	gnl\|CDD\|164495	CHL00091, apcE, phycobillisome linker protein.	0
NC_003272.1\|WP_044522641.1\|24367_28033_+\|Fis-family-transcriptional-regulator	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	5.84955e-113
NC_003272.1\|WP_010994200.1\|20869_21076_+\|phycobilisome-linker-polypeptide	gnl\|CDD\|366605	pfam01383, CpcD, CpcD/allophycocyanin linker domain.	6.73226e-13
NC_003272.1\|WP_010994201.1\|21220_22039_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	1.19493e-96
NC_003272.1\|WP_010994207.1\|28284_30057_+\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|223963	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion].	3.41558e-40
NC_003272.1\|WP_010994189.1\|10129_11329_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.42772e-22
NC_003272.1\|WP_010994186.1\|7995_8241_-\|ATP-synthase-F0-subunit-C	gnl\|CDD\|177001	CHL00061, atpH, ATP synthase CF0 C subunit.	2.40062e-37
NC_003272.1\|WP_010994199.1\|20165_20654_+\|allophycocyanin-subunit-beta	gnl\|CDD\|164493	CHL00088, apcB, allophycocyanin beta subunit.	2.93972e-94
NC_003272.1\|WP_010994202.1\|22143_22584_-\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	1.42397e-19
NC_003272.1\|WP_010994198.1\|19614_20100_+\|allophycocyanin-subunit-alpha	gnl\|CDD\|164492	CHL00086, apcA, allophycocyanin alpha subunit.	6.11038e-99

>NC_003272.1|WP_010994197.1|15777_19176_+|phycobiliprotein-ApcE
MSVKASGGSSVARPQLYQTLAVATITQAEQQDRFLGRGELDELASYFASGAKRLEIAQLLTENSEIIVSRAANRIFVGGSPMAFLEKPREPELAMAAVGGGGDVRESMKLGTVTYVETRGGFLENLRSIFNTSPSGPTPPGFRPINIARYGPSNMAKSLRDLSWFLRYATYAIVAGDPNIIVVNTRGLREIIENACSGEATIVALQEIKAASLSYFRKDPEAAEIVSQYMDVLITEFKAPTPSNKLRQRPSGDQQGLQLPQIYFSAAERRPKFVMKTGLSATEKNEVIKAAYRQIFERDITRAYSLSISDLESKVKNGDISMKEFVRRLAKSPLYQKQFYQPFINSRVIELAFRHILGRGPSSREEVQKYFSIISNGGLPALVDALVDSAEYSDYFGEETVPYLRGLGQEAQECRNWGPQQDLFNYSAPFRKVPQFITTFAAYDRPLPDQHPYGSGNDPLEIQFGAIFPKETRNPSTSPAPFGKDTRRILIHQGPGINNQVSNPSARGLAPGSLGPKVFKLDQLPGTIGKKAAKGASVKFSESSTQAVIKATYLQVFGRDVYEGQRLKVQEIKLENGEISVRDFVRALAKSDLFRKLYWTPFYVCKAIEYIHRRLLGRPTYGRQENNKYFDIASKKGLYAVVDAILDSLEYTETFGEDTVPYERYLTPAGVALRQLRVGTIREDVANVEKQETPRFVELGTVKENRTQPDIDFRINQGVTKQREQTKVFKRVAGIKDKAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPIDQAEIRKYNQILATQGIRAFINALVNSQEYNEVFGEDTVPYRRFPTLPAANFPNTQKLYNQLTKQNNDVVIPSFKPVQARIQSDKTPILAKAIADLAAQAKQMDKSKPLFIELGRSYNDGRGQSVEVGVGTTRRKPARIYRLTNGIGQAEKQLVINAIYRQVLDVFSGQVPDYYRRTELDSKLRNGEISVREFVREIASSEIYRKRFYTPYPNTKVIEFLFRHLLGRAPATQGEIRQYNKLLADNGLRAAVEAIVDSPEYSRYFGEDVVPYPRFPSLPAGNYLGSVQAAADLVKQSWSSLSPSTLTGRPGDR
>NC_003272.1|WP_010994194.1|13599_14121_-|hypothetical-protein
MKHQLFCNIFEPRYYQWRLQEAQKEYESGFERLSQMNSYSVRTALAAIQTLSQEDQSQILPILVKMSEIQLFEFMDEKMTEEEKAILQRFEISENNPVLRKKILKQEKIFNKYPNSQLRKSIKKALMEILQPVFYADICFDTQISDTWKVSTFIDFEDGYGYYYSHSIFRGYL
>NC_003272.1|WP_096637171.1|12727_13521_-|IS5-family-transposase
MRRKSYSTDLNDSEWAILAPLIPPAKCGGHPRTTDMREVCNAIYYHLKTGCQWDMLPGDFPPSSTVYSYYRKWQKRGIWEQMNHTLRDQVRQKMGKSTQPTAIAADSQSVKTTGKKGDVYGFDGGKKVKGRKRQTLVDSLGLLLKVVVSEANAGERLLAAYTLMELLEERPELLEKVEVIWVDSGYDGDKFALSVWLMIQAHVEVIRRTNQEFQVLPKRWVVERTFGWLNQYRRLSKDYERLPEMSEAAIYAVMTRIMLRRLVV
>NC_003272.1|WP_010994191.1|11846_12275_+|hypothetical-protein
MNQAELIAILKDNCLMQTEEETDRFENALNELLENGDEQFLSQYHLILDDNCQQSEVMFGLVHFLESFDVEKQISAFINVVPQLMINAPEWARIIHDRILNDELACQVYDKLLHSVNTETPHFIYSLLEASIINHQNEQDNS
>NC_003272.1|WP_010994190.1|11559_11850_+|hypothetical-protein
MTAKVPGYTTDQGFAIMMEHLSPGKGGRHRQTISYGKSPNLGLSPREVLAIEIWDVRSIYLRHNLYNKYIRESLQILIRLNQLKWRGLFDKGNTTL
>NC_003272.1|WP_010994189.1|10129_11329_-|class-I-SAM-dependent-methyltransferase
MSDPQAVSSAVAKLYDTYPFPPEPILDEPPPGYNWRWNWLAAHSFCTGRKPAKQDIRILDAGCGSGVGTEYLVHLNPQAQVVGIDLSAGTLAVAKVRCQRSGANRVEFHHLSLYDVEQLPGEFDLINCVGVLHHLPDPIRGIQALAKKLAPGGLMHIFVYGELGRREIQLMQKAIALLQNEKQGDYRDGVQVGRKIFASLPENNRLVKREKERWAMENQRDECFADMYVHPQEVDYNIDTLFELIDASGLEFIGFSNPSFWNLDRLLGKAPELIERSEKLSDRQRYRLIELLDPEVTHYEFFLGRPPIKKADWSNDNALLQAIPELNPCIDGFPSQCIFNYDYQIVNLSALEFEFLQKCDGNSTVAEILVSVQLSLDEVRSLIQQQLVMLIPGAKGYAS
>NC_003272.1|WP_044522640.1|9131_9593_-|ATP-synthase-subunit-I
MSLSEEPISPTPTTRQDTQPGFEDAEPANSSMQEFYQLYQELVLITLVLTGVVFISVWIFYSLNIALNYLLGACTGVVYLRMLAKDVERLGREKQSLSKTRLALLMALILLASRWNQLQIMPIFLGFLTYKATLIIYVVRVAFISDSPKLRQP
>NC_003272.1|WP_010994187.1|8323_9079_-|F0F1-ATP-synthase-subunit-A
MLNFLNFYSVPLAELEVGKHLYWQIGNLKLHGQVFLTSWFVIGVLVLASVAASSNVKRIPSGIQNLLEYALEFIRDLAKNQIGEKEYRPWVPFVGTLFLFIFVSNWSGALVPFKLIHLPEGELTAPTSDINTTVALALLTSLAYFYAGFSKKGLGYFGNYVQPVSFMLPFKIIEDFTKPLSLSFRLFGNILADELVVGVLVLLVPLFVPLPVMALGLFTSAIQALIFATLAAAYIGEAMEDHHGEEHEEHH
>NC_003272.1|WP_010994186.1|7995_8241_-|ATP-synthase-F0-subunit-C
MDPLVSAASVLAAALAVGLAAIGPGIGQGNAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFA
>NC_003272.1|WP_010994185.1|7358_7850_-|F0F1-ATP-synthase-subunit-B'
MTHWITLLAVEKVAKEGGLFDLDATLPLMAIQFLLLALILNATLYKPLGKAIDGRNEYVRNNQLEAQERLSKAEKLAEAYEQELAGARRQAQTIIADAQAEAQKIAAEKVAAAQKEAQAQREQAAGEIEQQKQQALASLEQQVDALSRQILEKLLGADLVKQR
>NC_003272.1|WP_010994198.1|19614_20100_+|allophycocyanin-subunit-alpha
MSIVTKSIVNADAEARYLSPGELDRIKSFVAGGQQRLRIAQALTDNRERLVKQAGDQLFQKRPDVVSPGGNAYGQEMTATCLRDLDYYLRLVTYGIVAGDVTPIEEIGVIGVREMYKSLGTPIEAVGEGVRALKNAASTLLSAEDAAEAGSYFDYVVGALQ
>NC_003272.1|WP_010994199.1|20165_20654_+|allophycocyanin-subunit-beta
MAQDAITAVINSADVQGKYLDTAALEKLKAYFSTGELRVRAATTISANAAAIVKEAVAKSLLYSDITRPGGNMYTTRRYAACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPVGATVQAIQAIKEVTASLVGADAGKEMGIYLDYISSGLS
>NC_003272.1|WP_010994200.1|20869_21076_+|phycobilisome-linker-polypeptide
MSRLFKITALVPSLSRTRTQRELQNTYFTKLVPYENWFREQQRIQKAGGKIIKVELATGKQGTNAGLQ
>NC_003272.1|WP_010994201.1|21220_22039_+|tetratricopeptide-repeat-protein
MNFSSARQYFYQEIQQSEVDIDLARAALYIAKEEYPKLDVEEYLNALDTMAMEVEERLPSSRYPLRVIQGINEYLYDDLGFLGNQKDYYDPRNSFFNEVIDRRVGIPITLALVYLEIAQRIDFPMEGVGLPGHFLIRPAISDMEIFVDAFNRGEVMFAQDCQDKLNQMFKESVNLRPEFLARVSKRQFLARMLTNLKYIYLRQQQLEKSLGVVERILLLFPETTSELRDRGLLYYQLGHYPQATNDLELYLANVPNAEDAATIRRLLGELGR
>NC_003272.1|WP_010994202.1|22143_22584_-|SRPBCC-family-protein
MSQVLEQSIQINATASTVERCITDLTLMHRWLNPVLRCEPVGETWSTDIGSKSRFIIQIPLLQPTLNTVVSERQPGLVVWTFQGFFQGSDRWECQPIEQGTQLINRFEFDIPNPLVSWGFNTFAAAWTKQDMQAQLRRLKRVAESQ
>NC_003272.1|WP_010994203.1|22722_22944_-|hypothetical-protein
MTNNNNFKGDTLSPILVILVAGSISLAIVNKENHPAYFDIVKIAMAYSFGSLKSHKQSRDSRNQDDADNSEVK
>NC_003272.1|WP_010994204.1|23017_23263_-|hypothetical-protein
MIMKSNFDNKQNVILLWAGRGVKYFLLMLVGMAIAFVISHTFTVVPVLMLLRSPDTWIWIARVAISLFCLLAIAMIFESWS
>NC_003272.1|WP_010994205.1|23448_23844_-|hypothetical-protein
MNSFSQLPEFIKGSNTLRMQLKIEDNPWETSPKLALEDKSQPKILPTQCYSVDLPPVFSHMTFLLIETLSATQHGEFVTRSKQGKYETIVELSGHISHRYGLTQQELAEIQTIYDQILETWIAWRIANKKT
>NC_003272.1|WP_044522641.1|24367_28033_+|Fis-family-transcriptional-regulator
MMIAADVFQLPEDFITGVATKYGVTKTELDALVLALHDHSGAEIAAKLDISQPAVRKRLGESYRKLGIEGKGNKKINGLRQKLYEQYQLSYQHPVSSSEDWGEAVDVAGFRGRKEPLLELEQWIEGNGSNRCRLVAVLGMGGIGKTVLAAMGAKKVQKEFDYLIWRSLRNAPSLGDILTQLLRFLANDNENDLTDTDNNKIVRLIDVLRKKRCLIILDNVESVLRSGEGKNQEWAGDYQPGYENYGYLFKKVAEASHESCLLLTSREKPKEVAALEGKNLPVKVLQLSSLNLAEAREILLDKGFYCTDEQLDELVRRYSGNPLALKIVATTVYELFSNNISEFLTQIHQESAVYGDIRTLLKQQFQRLSELEKKVMYSLGANREYVSFRELKDDWLTTESPIKVMEALESLLRRSLIEKASPTLIEKASSTQGEKEAESSKFGLESVVMEYITAKFIENSLEEFSQTKKLDFINTYPLMKARSLDYIRQIQERLILEPVKQKLLNIFGTELELHLRRMLGTLQKEPLPKKGYAAGNLINLLRQLQLDKIPDESPIDLSGRDFSGLTIWQAYFKEVKLKETIFANSDLTGSVFTETMSSVVSVKFSPDGKYFATGLMNGEIRLWQTSDNKQLRIYKGHTAWVWAFAFSPDSRMLASGSADSTIKLWDVHTGECLKTLSKNTNKVYSVAFSPDGRILASASQDQTIKLWDIATGNCQQTLIGHDDWVWSVTFSPVTDDRPLLLASSSADQHIKLWDVATGKCLKTLKGHTREVHSVSFSPDGQTLASSGEDSTVRLWDVKTGQCWQIFEGHSKKVYSVRFSPDGQTLASCGEDRSIKLWDIQRGECVNTLWGHSSQVWAIAFSPDGRTLISCSDDQTARLWDVITGNSLNILRGYTRDVYSVAFSPDSQILASGRDDYTIGLWNLKTGECHPLRGHQGRIRSVAFHPDGKILASGSADNTIKLWDISDTNHSKYIRTLTGHTNWVWTVVFSPDKHTLASSSEDRTIRLWDKDTGDCLQKLKGHSHWVWTVAFSPDGRILASGSADSEIKIWDVASGKCLQTLTDPQGMIWSVAFSLDGTLLASASEDQTVKLWNLKTGECVHTLKGHEKQVYSVAFSPNGQIAASGSEDTTVKLWDISTGSCVDTLKHGHTAAIRSVAFSPDGRLLASGSEDEKIQLWDMQNCSRLKTLKSPRLYENMDITDITGITDAEKASLKMLGAVEES
>NC_003272.1|WP_010994207.1|28284_30057_+|B12-binding-domain-containing-radical-SAM-protein
MFLNLINPPNKFIKFLGFVQDMVDTEKVLSLPSSIWQPIDNRWKLSKIVLIGEYIKYRTFNGANKALPVLASSLVNAGFNRVLQLDLERPDLTIDHVLHEVINADLIIFAGCLTTQWQEIDEHSQKIFTELKKYRRENVPILVGGYATKSIEDIARITPWITGFCDGEGEESIVEIAYAVAKGNFYRNMKHLPGLCFMNQDREFYRVAPNHSQHIKFHHSIAPRVDNFDDIDQNLGLIHIPQIHNMDIFKTKDGRQLKTAQMFTQRGCPWGCGFCNKSQENNHIVRLSETSLRQQLRQLKQRDYEAIYLDVDTFTAHTTAAKREAEILQQEGFMWGSNTRIDKIDYEQMRYLAEHNCVYMFFGVEHTLPEVSLANHKFNGSIQSQIKQAFDYPAKIKKAFQDMNKAGLPSSYFLILGLPKAKLNEDKTKIIGYEPTTLEDDLTAIRFGLEECHPDFLNFNVLRFMPGSFAADTPGDCNYSCVRPSGNKPITAGYFLQRAVQHYGYPQSPTHGVYRLCESVGRYQPISTAINPQRVYNTICYAMQLINAKIDAGGKATKLFIDRDLLALGLVSQDEQGRYAIAPLEDFARV

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Crispr_ID: NC_003272_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_2

445573-447863

Unclear

Consensus_repeat	Method
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CRISPRCasFinder
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACNNNNNNNNNN	CRT
GTTACTTACCATCACTT--CCCCGCAAGGGGATGGAAAC	PILER-CR
GTTACTTACCATCACTT--CCCCGCAAGGGGATGGAAAC	PILER-CR
GTTACTTACCATCACTT--CCCCGCAAGGGGATGGAAAC	PILER-CR

29 spacers

cas2,cas1,csx18

The CRISPR arrays of NC_003272_2

>merge|NC_003272|2|445573-447863|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTCCATGAACCTCTCCCCGCTGACCCGCGCGTCCCGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACAAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTTGGCGGATCTGATGTTCGATGATCTGGGAATAGAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCTGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTATCAAACTTATATAAACACAGCAAAGCTATCCTATGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGCGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTTTGTATGGACGGCCATACAGATCGCCGATGGAAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTTTATCCTTGCAATCCATACCTCCGTTTGCTGTAGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTGTCCCTATCCAAAATACTCCTTTTTTATAAGGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTTGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGATGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACTTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACACAACACATTCACGGTGTTTCACAATCGCCACATAGTCAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGAGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCGTTCTTTTAAATGACGCAGAGTATTATCTACAATTAGTTACTTACCATCACTTCCCCGCAAGGGGATGGGTGCGACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAGCTTACTTACCCACAAGGGGGCGGAAATTAAAAGATAT

>NC_003272|2|2|445573-447790|CRISPRCasFinder
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TATCAAACTTATATAAACACAGCAAAGCTATCCTATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTTGTATGGACGGCCATACAGATCGCCGATGGAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGTCCCTATCCAAAATACTCCTTTTTTATAAGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGGTGC

>NC_003272|2|1|445573-447863|CRT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TATCAAACTTATATAAACACAGCAAAGCTATCCTATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTTGTATGGACGGCCATACAGATCGCCGATGGAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGTCCCTATCCAAAATACTCCTTTTTTATAAGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGGTGC	GACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAG
CTTACTTACCCACAAGGGGGCGGAAATTAAAAGATAT

>NC_003272|2|1|445808-446799|PILER-CR
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TATCAAACTTATATAAACACAGCAAAGCTATCCTATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGCGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTTGTATGGACGGCCATACAGATCGCCGATGGAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGTCCCTATCCAAAATACTCCTTTTTTATAAGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTTGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA


>NC_003272|2|2|446926-447331|PILER-CR
	GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TATCAAACTTATATAAACACAGCAAAGCTATCCTATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGCGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTTGTATGGACGGCCATACAGATCGCCGATGGAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGTCCCTATCCAAAATACTCCTTTTTTATAAGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTTGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA


>NC_003272|2|3|447369-447716|PILER-CR
	GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TATCAAACTTATATAAACACAGCAAAGCTATCCTATG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACGTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGCGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTGGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	GTTTGTATGGACGGCCATACAGATCGCCGATGGAA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TGTCCCTATCCAAAATACTCCTTTTTTATAAGG
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAACCGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTTGTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC	ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA
GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_044520599.1\|450620_452033_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|214724
NC_003272.1\|WP_010994565.1\|455041_455863_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_003272.1\|WP_010994551.1\|438968_439610_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|223705
NC_003272.1\|WP_044520598.1\|443836_444847_+\|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|272998
NC_003272.1\|WP_010994564.1\|454142_455045_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NC_003272.1\|WP_044520597.1\|439606_440356_-\|sucrose-phosphate-phosphatase	unknown	unknown	gnl\|CDD\|130549
NC_003272.1\|WP_010994550.1\|437730_438891_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NC_003272.1\|WP_044520601.1\|456013_457822_-\|IucA/IucC-family-siderophore-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226715
NC_003272.1\|WP_010994560.1\|448246_449176_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982
NC_003272.1\|WP_010994567.1\|457995_459192_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NC_003272.1\|WP_049942522.1\|440673_441081_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994554.1\|441158_442367_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NC_003272.1\|WP_010994568.1\|459188_460472_-\|lysine-N(6)-hydroxylase/L-ornithine-N(5)-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|226017
NC_003272.1\|WP_010994556.1\|443339_443648_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NC_003272.1\|WP_010994549.1\|436552_437557_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277366
NC_003272.1\|WP_010994569.1\|460465_461047_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_003272.1\|WP_010994561.1\|449573_450206_-\|DUF938-domain-containing-protein	unknown	unknown	gnl\|CDD\|253548
NC_003272.1\|WP_010994558.1\|444954_445239_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699
NC_003272.1\|WP_010994563.1\|452144_454085_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
NC_003272.1\|WP_010994555.1\|442486_443245_+\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_044520599.1\|450620_452033_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|214724	smart00563, PlsC, Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.	3.47361e-07
NC_003272.1\|WP_010994565.1\|455041_455863_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.79333e-132
NC_003272.1\|WP_010994551.1\|438968_439610_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|223705	COG0632, RuvA, Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair].	1.01191e-71
NC_003272.1\|WP_044520598.1\|443836_444847_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|272998	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.	1.29059e-122
NC_003272.1\|WP_010994564.1\|454142_455045_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.24632e-89
NC_003272.1\|WP_044520597.1\|439606_440356_-\|sucrose-phosphate-phosphatase	gnl\|CDD\|130549	TIGR01485, putative_sucrose-phosphate_phosphatase, sucrose-6F-phosphate phosphohydrolase. This model describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). SPP is a member of the Class IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose, contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.	5.87225e-130
NC_003272.1\|WP_010994550.1\|437730_438891_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NC_003272.1\|WP_044520601.1\|456013_457822_-\|IucA/IucC-family-siderophore-biosynthesis-protein	gnl\|CDD\|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_003272.1\|WP_010994560.1\|448246_449176_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	2.11124e-172
NC_003272.1\|WP_010994567.1\|457995_459192_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4736e-17
NC_003272.1\|WP_010994554.1\|441158_442367_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	9.3087e-175
NC_003272.1\|WP_010994568.1\|459188_460472_-\|lysine-N(6)-hydroxylase/L-ornithine-N(5)-oxygenase-family-protein	gnl\|CDD\|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_003272.1\|WP_010994549.1\|436552_437557_-\|metallophosphoesterase	gnl\|CDD\|277366	cd07423, MPP_Prp_like, Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. Pnkp is the end-healing and end-sealing component of an RNA repair system present in bacteria. It is composed of three catalytic modules: an N-terminal polynucleotide 5' kinase, a central 2',3' phosphatase, and a C-terminal ligase. Pnkp is a Mn(2+)-dependent phosphodiesterase-monoesterase that dephosphorylates 2',3'-cyclic phosphate RNA ends. An RNA binding site is suggested by a continuous tract of positive surface potential flanking the active site. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.47499e-28
NC_003272.1\|WP_010994569.1\|460465_461047_-\|acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.46165e-68
NC_003272.1\|WP_010994561.1\|449573_450206_-\|DUF938-domain-containing-protein	gnl\|CDD\|253548	pfam06080, DUF938, Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.	2.24606e-110
NC_003272.1\|WP_010994558.1\|444954_445239_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	3.32795e-30
NC_003272.1\|WP_010994563.1\|452144_454085_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0
NC_003272.1\|WP_010994555.1\|442486_443245_+\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	2.59263e-72

>NC_003272.1|WP_010994558.1|444954_445239_+|CRISPR-associated-endonuclease-Cas2
MTKLYLVCYDIPDDKRRTKLAKLIEQRCQRVQYSVFECPLEESVLNYQLEKRWLPILKLSEDSLRVYPLDATAKQQTRVYGGEPPYEPPDYLIL
>NC_003272.1|WP_044520598.1|443836_444847_+|CRISPR-associated-endonuclease-Cas1
MTTLYLTEPGTILRYRNESLIIMKQEKSHNCRLAEITLIVVLPGVQLTDVVISQLLDRGIETIFLRQDGQFRGRLQGHFATNMTIRLAQYRTVETTFGMALAQKLVIGKVRNQRVLLQRRNRATNGQISELTEAIDLISVYASQLNNTTTPLNRNELMGVEGICARTYYQALKHWFPTQWNFNGRNRRPPLDPINALLSWGYGVLLARVFSACVQAGLDPYLGFFHAIEPYRPNLVLDLMEEFRPVVVDQAVISLIQSDLLTQEDFQPSPDGVGIWLGTMGKKLLLGELERRFRTSVLYPPQNRQLSLNQILLEQARSLGRCLLQSKLDYEAFVIK
>NC_003272.1|WP_010994556.1|443339_443648_-|hypothetical-protein
MSASVTKKLVRYRSWIVAIVNAAVTWVILIIAPLGLFAVIICTVGVFLASLLVGEISDRLLFKLLRNIQRDVIQANRETDSLDVGLSSYLDLPTEQKTEKQE
>NC_003272.1|WP_010994555.1|442486_443245_+|adenosylcobinamide-GDP-ribazoletransferase
MVKLLLLNLLASIIFYTNIPLPYINGLDFQRVARLVPTVGLIIGGILGLFDGGMNYLGMPVLTRSALVVVLWIFITGGLHLDGAMDTADGLAVGDPERRLEVMADSATGAFGAMSAIAILLLKTSALTEIGEYRWLVLMAACGWGRWGQQVAIACYPYLKATGKGAFHKQAIRSYKDLLPGLCLMFAISGLFWLVNNHHLLISVVVLIAGSAIATLTAAWFNHKLGGHTGDTYGAVVEWTEALFLCVLTILT
>NC_003272.1|WP_010994554.1|441158_442367_-|NupC/NupG-family-nucleoside-CNT-transporter
MERAISALGILVFIGISYAMSIRRDAVRWRTIAWGLGLEFVLALVILKTPWGLNVFRSLGDTVSHFLSFSDVGAKFVFGDNFKDHFFAFQVLPTIIFFSAFINVLYYYGILPRVVNGLAWVMMKTMKTSGSESLSCAGNIFLGPTESALMVKPYVAKMTQSELHAVMTGGFATIAGGVLGAYLSFGIPPEHLIAAFFMTAPTSLVVSKLLYPETEVSETASQAKMEGETGYVNVIDAAASGAIDGVKLAVNVGVMIIAFLGLLAVVNALIGWLGSYIGLPQLSLEWILSFIMAPVAFFMGVPWSDCAQVGALLGKKTILNEFLAYVDLGNLIKSGKISERAVIIATYALCNFANIGSIGITIGGITGMAPQRQHDLARMGVRSMIGGLLAGFITACIAGMLI
>NC_003272.1|WP_049942522.1|440673_441081_+|hypothetical-protein
MGVYYISDFFERSPVASCNIPYGFIQTKEAKSYTFAEEIVVQPWRGQHHVYALFQIPDGYQHEYLFRLKIPGEPTQCGGLMPLDKNVLASIPRKQGYYPVRGYLNTRIALNLMIQGKLNQLKQPQNWQLGYVKNN
>NC_003272.1|WP_044520597.1|439606_440356_-|sucrose-phosphate-phosphatase
MKPFLFVTDLDHTLVGNDAALAELSQILTHHRQEYGTKIVYATGRSPILYKELQVEKNLIEPDGLVLSVGTEIYLDGSGNPDSDWSEILNDGWNRELVLSVTKKFPELMLQPDSEQRPFKVSFFLHQEASFKVIPQLETELAKCKLNIKLIYSSGIDLDIVPLNSDKGQAMQFLRQKWKFAAERTVVCGDSGNDIALFAVGNERGIIVGNARPELLQWHSEYPADHRYLAKNFCAGGIIEGLQFFGFLE
>NC_003272.1|WP_010994551.1|438968_439610_-|Holliday-junction-branch-migration-protein-RuvA
MISYLKGIVAGIQNVGSNRVILTLEVNGMGYDLQIPQRLAKQLPTTGDLVQIFTHYQVREEIPLLYGFSSPAERDLFRHLLSVSGVGAASAIALLDTLELPDLVQAIIAANVQILIQAPGVGKKIAERVCLELKAKLIEWRKSAGFFVATEGPAPGILEEVQMTLFALGYTAHEVSHALHVVSEDIGLPKDAYVEDWIKQAIAHLSSSEQVSH
>NC_003272.1|WP_010994550.1|437730_438891_-|8-amino-7-oxononanoate-synthase
MPDPYAWLQNSLLTIHRADWYRSVQAIQGRAGASVVLGGQEVINFASNDYLGLAGDERLIAAAVAATQEFGTGSTGSRLLSGHRELHGQLEKAIASWKQTEDALVFSSGYLANIGAIAALVGKRDLILSDQYNHSSLKNGAILSGATVREYSHCQVGELKTQLLEQRQNYRRCLILTDSVFSMDGDLCPLPDLLDLAEEFSCMLLVDEAHATGVMGETGAGCVEHFGCTGRQLIQIGTLSKALGSLGGYVTGSHNLIDYLRNRAPSWIYTTGLSPADTAAALAAINIAQQEPQHRMQLWHNVNYLRELLQKIPNLKLLPSASPILCFQLSSPSEALQVGKQLKQAGIFAPAIRPPTVPTSRIRISLMATHKASHIEKLVAVLQGLN
>NC_003272.1|WP_010994549.1|436552_437557_-|metallophosphoesterase
MRTIIVGDIHGCYEELLQLLTKAQITKEDCLISLGDIVDRGVDSVRVYDFLKNRPNTIVLMGNHERKHLRQTLSYSQEIVKLQFGDRYPEFLEWVSHRPYYHETDAAILVHAAVEDGIPIGEQRPEVLCGCTAGEKHLEKRYGNTYWSQLYTGVKPIIFGHHVVGDIPLIIAGKIYGIDTGACHGGKLTGLILPSFEVVQVQAPQDYWREEMVKWQLPVMMAKPWGSYKWAKIQAVCDEYRDSPHPELSAFIVEKEQWMNDLLALAPTAILKVEDKLAELISVYGADDFKKQARCFTYATLLYKANASNLTPEFLQESLPTPDKWLQVMSELGV
>NC_003272.1|WP_010994560.1|448246_449176_-|rhodanese-related-sulfurtransferase
MNQENTQIVAAFYKFVSLPDFAEKQEPLLAYCLAQNIKGTILLAKEGINGTIAGSRLSIDNVLSYLRSDLRLQDLEHKESTADTPPFERMKVRLKKEIVTLGLPEVDPNEQVGAYVTPEEWNELISDPEVIVIDTRNDYEVHIGTFQGAQNPQTNSFRDFPEYVRQNLDPNQHKKVAMFCTGGIRCEKASSFMLSQGFAEVYHLKGGILKYLEQIPPEESLWQGECFVFDERIAVVHGLEPGTHELCFCCGHPLAEEDKASLQYEEGISCPHCFDSLTEDKRMRQQEKWRQYQLKNSHSLGNSKLGVAD
>NC_003272.1|WP_010994561.1|449573_450206_-|DUF938-domain-containing-protein
MNTPQDPRKYAPATQRNREPILEVLLQVLPASGTILEIASGTGEHAIFFAPRLKPRKWLPSDPNPELRASITAWIAQFPSDNLYPPVELDASQPIWSVERDAILQDAPIAAIVNINMIHISPWSACLGLLAGAGRILPPGGILYLYGPYKQGGEHTAPSNAAFDESLRSQNPEWGVRNLEDVIAAAKQQNLQLHKTYQMPANNLSVVFQR
>NC_003272.1|WP_044520599.1|450620_452033_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MPKLINSTQPPLKFIPHSFNPLILRLMQWLLPLVLRFRTRPWLPAGIVKIEAENSEILAELYQQFQSGKIRFLMAFRHPEVEDPLCMLYLISRIVPQVARQKGIKLQYPVHSHFVYDRGMTIWAGNWLGWLFSQLGGVPIRRGRRLDRQAIQTARDLFANAPFPIAVAPEGGNNGHSGIVSPLEPGVSQLGFWCVEDLKKANRTETVVIVPVSIQYHYVTPPWSKLDELLSKLEVDSGLPVQSVGESAINQPEIYAQRICRLGEYLITEMEEFYRRFYHQDIPNTVATEESTTPNQVLIARLHHLLDKALQVSEQYFGIPAQGNFIDRCRRLEEASWNRIYREDLPDMDNLPSFKRGLADWVAQEADLRIQHMRLVESFVAVNATYIQEKYSADRFAETALLMFDMLSRIQESTLPGRPRLGLREAVIKVGEPISVTERWEKVHDNRQAAKRAVNNLTQDLQVALENLID
>NC_003272.1|WP_010994563.1|452144_454085_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MLKPRPLLAGILLLLPLLLLHSHLFTAPEDILRYIKLPRTTIGILAGASLGIAGALFQTVTRNPLASPATLGVNAGAYLAVTATTIFAPEIFAWSPLLVAFTGGLLAALLVYAIAGKEITPIRLTLSGMAVSLALAAFTSALQLLYENQTRDLFFWGAGSLLQTNWQGSIYAAPRVLLGAIAVFTIAKPLDVLLMGEDVARSLGSKVQWTRLSSTLLGIFLASVAVSVVGPIGFVGLVAPHIGKLMGCRQHQILLPSAAIWGAVILLGADLVAQQISSELPAGGITALLGAPFLVWLVRSSPRLLSKTEGNNALPIQIKSRLQYPALLLLGLCCLLLVLLLGLSLGNIHLDIHQLTQVISGNSDALTERIVLYLRLPRLLVALLAGAALAISGLLLQGVVRNPLAGPEIMGITSGAGFGALLVLVLIPNAPVTFIPIAAFIGAVVAFGVVYLAAWQNGVAPGRLALVGIAVSAFCAAGINLLVVKSKLQVAQALVWLAGSTYARQWDEVWQLLAFPLILLPLGWLFARKLDVMALGEDLPFILGMRLQQARGVILAIAVALAAAAVSTVGTISFVGLIAPHAARLLVGSRHRQLVPIAAIFGAILVTLADTIGRVVLAPKEIPSGLVTALIGTPYFLWLLGGNQKH
>NC_003272.1|WP_010994564.1|454142_455045_-|iron-siderophore-ABC-transporter-substrate-binding-protein
MSKFTRRAFLTTATASALTVACGQREQPQTSNQTATRVIALEWVYAENLLALGIQPVGVADIQGYKQYVNVQPSLTESVVDVGTRQEPNLEAIAQLKPDLILGVELRHKTIYDTLSAIAPTLIFNPYPSAENSNQLDEMQQTFRKIAERVNRQDVGEKVLQQMQTQFQTAATRIKNTQKPDFVLGQFSDNAPQIRLFTDNSMATQILTAIGLKNAWKGEFDRFGFNTVWIEALPTVETANFIYISAPNSPYKQQLETNPVWQRLQFVQQKRLYAIAPDTWLFGGPLSAQVLLQKVIDTLT
>NC_003272.1|WP_010994565.1|455041_455863_-|ABC-transporter-ATP-binding-protein
MDYAPPTVIASQNLQIAYDGKIIVPDLSVAFSLGEITALLGPNGSGKSTVLRTLARLMQPSKGTIYLHGRDISHIPTKELAKQLTILPQSSEAPPGVTVWELIGYGRYPHQNLLGGFSQKDIAAMEWALAVTGLEPLANRIVDTLSGGERQRAWIAMALAQQTQVLLLDEPTTFLDIRHQIEVLALVRRLNQEHGITVGWVLHDLNQAAAYSDRLIMLQQGKIVTVGTPQEVMTASNIQQVFGVEMTVIPHPINGYPTCLPCHLGIPQGELSR
>NC_003272.1|WP_044520601.1|456013_457822_-|IucA/IucC-family-siderophore-biosynthesis-protein
MQNLTKILQYPRWQTVSQKLLAKMLSEFMYEEIIKPETIEQTAEYTLYHLALPEGIAYNFQAKKRLFDSYRVIPASIQRREAGEFSPAFNPLQFVLDIHTFVGMTAETTAHLIKELSNTLLADAHIQTKKETQDIDLLNLDYPSLEGEMEGHPWITFNKGRIGFGYDDYLAHAPESKQPVSLFWIAVSSERAQFNAIPGLDYVTLIQEELGAESLAEFTAILEQRHFSPADYYFLPVHDWQWKNIITLLFVEEIATGGIIPLGYSQDKYLPQQSIRTFANISYPQKRYVKLPLSILNTLVYRGLPGDRTQVAPLVTEYVKSICDHDPFLKDECRLILPGEIASINYDHPYYSQLSGAPYQYKEMLGCLWRESVLAYTKADERPITLASLLHIDGNGQPFISQLVERSGLSLDEWLSRLFNTILPPLLHYLYRYGVVFSPHGENTILVLKDFAPHRLAMKDFVDDVNISRHPLPELETLTPQLKAVLLTEPPEGLCQFIFAGLFICHHRYLSDLLADYHNYPEQTFWTKVRETILSYQSRFPEMQDRFELFNLLAPQFTKLCLNRNRLITYGYADDGDRPHAAAFGKVNNALYTVAQLMPMER
>NC_003272.1|WP_010994567.1|457995_459192_-|MFS-transporter
MKHRLPLISGALFLCVFLSIFNEVLLSPFYPQFFRKVFGVTDLAYTGYYIFVCRLTVVLCAPVWGVLSRRFEVKHLLFVGQLGAAFMTALMGTSSSVEQFLMYTILLLLCKSSYLLVYPLIIQLGGEEKRAAIAGTYQAVFHGAIIIATIVGAFMVNIDTPLIIFYGIAAADLLQLAICAYMLRGVSTAGGQGAGGRGENQPVAPNQLGYIIAIGVVILTFQLANNLVRPYFTAYVTAEPLKVDLLTSSLLFLIPSVMAIAALPYIRQACRPERLHTIYLGSLSLLIVSLGIQGLSSNLPLLILARIVYGFFLAVTQAALELQIFNKSTAKHLHFNYSLATSFANIGHLGAPLLASWLVNTHSLASPFIAATIICCLNLLFFRYVPKAGGRRQAAEGF
>NC_003272.1|WP_010994568.1|459188_460472_-|lysine-N(6)-hydroxylase/L-ornithine-N(5)-oxygenase-family-protein
MVNCVYDLIGIGLGPFNLGLAALLEPITEIKSLFLEQKPQFQWHPGLLLEGTTIQVPFLADLVTMAEPSSKFSFLSYLKAKSRLYNFYFWEEFHIPRREYNDYCQWVAKQLPNCYFGEQVKSIDWDEKAQEFIVSGTNFIYRCRNLVLGVGTVPYIPPCFRDLVSENVFHSSKFLHQKVSCRQAKSITVIGSGQSAAEVFYELLQEQENYDYHLEWHTRSSGFFPMEYSKLGLEHFSPDYIHYFYHLQPEQRDELLTKQGLLYKGISFNTIAKIYDLLYERSVADNYPDVKLLSGVEVKDIEPTAEGYRLTYRHSHQHQPFIHESDRIILATGYHHATPNFMADIRDLLQWDEKGRYKVNFDYHLSLTQDIPNRIFVQNAELHTHGIGAPDLGLGCYRNSVIINSLTGRNTYPVQQRNVFQQFGLVP
>NC_003272.1|WP_010994569.1|460465_461047_-|acetyltransferase
MSVSMINYSYARFDAAINKTIAFRPVVLEEDLNLIHNWMNQPHVIPFWNLAFDLERMREHLQRTLADKHQTLYIGCLDDEPMSYWESYWTIDDIVARHYSAEATDQGIHLLIGETKFLGKGYALPLLRAMVFFQFENTATQKIIAEPDIRNQKMIHVFEKCGFEFQKEIELPDKFGALMFCDRQLFFQRWKAW

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Crispr_ID: NC_003272_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_3

476040-476497

Orphan

Consensus_repeat	Method
AANTNCCAGTTACCATTACC	CRT

10 spacers

The CRISPR arrays of NC_003272_3

>merge|NC_003272|3|476040-476497|CRT
ATTAGCCAGTTACCATTACCAACAACTGTGTTATTATTGGTAAAAATCCAGTTGCCATTACCAAGAATTGTATTGTTAGTACCGAAGTCCCAGTTACCATTACCAATGGTTGTATTATCAGTACCGAAATACCAGTTACCATTACCTAAAGTTGCGTTATTATTTCCACTATCTAAATACCAGTTACCATTACCAATTGTTGTATTATCACTGCCATAATGCCAGTTACCATTACCTAAAGTTGCGTTATTATTTCCACTATCTAAATACCAGTTACCATTGCCAATGGTTCTATTATCACTACCAAAGTGCCAATTACCATTACCTAAAGTTGCGTTATTACTGCCATCATCCCAGTACCAGTTGCCATTACCAATGGTAGTGTTACTACTCCCGAAAAGCCAGTTACCGTTACCAACAGTTGTATTATTAGTGTTAAAATTCCAGTTGCCGTTACC

>NC_003272|3|2|476040-476497|CRT
ATTAGCCAGTTACCATTACC	AACAACTGTGTTATTATTGGTA
AAAATCCAGTTGCCATTACC	AAGAATTGTATTGTTAGTACCG
AAGTCCCAGTTACCATTACC	AATGGTTGTATTATCAGTACCG
AAATACCAGTTACCATTACC	TAAAGTTGCGTTATTATTTCCACTATCT
AAATACCAGTTACCATTACC	AATTGTTGTATTATCACTGCCA
TAATGCCAGTTACCATTACC	TAAAGTTGCGTTATTATTTCCACTATCT
AAATACCAGTTACCATTGCC	AATGGTTCTATTATCACTACCA
AAGTGCCAATTACCATTACC	TAAAGTTGCGTTATTACTGCCATCATCC
CAGTACCAGTTGCCATTACC	AATGGTAGTGTTACTACTCCCG
AAAAGCCAGTTACCGTTACC	AACAGTTGTATTATTAGTGTTA
AAATTCCAGTTGCCGTTACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010994575.1\|469799_470048_-\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|225440
NC_003272.1\|WP_044522688.1\|469419_469683_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994584.1\|478300_479365_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237376
NC_003272.1\|WP_010994587.1\|481777_482590_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|178201
NC_003272.1\|WP_010994591.1\|487181_488579_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224441
NC_003272.1\|WP_010994572.1\|464673_466155_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235892
NC_003272.1\|WP_010994578.1\|471951_472284_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994580.1\|472690_473017_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|183845
NC_003272.1\|WP_010994571.1\|463057_464674_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223154
NC_003272.1\|WP_010994579.1\|472355_472685_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370734
NC_003272.1\|WP_010994583.1\|477035_477803_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994586.1\|480494_481724_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NC_003272.1\|WP_010994589.1\|483798_484671_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NC_003272.1\|WP_044520605.1\|466678_469228_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|238657
NC_003272.1\|WP_044520613.1\|488667_489912_-\|metabolite-traffic-protein-EboE	unknown	unknown	unknown
NC_003272.1\|WP_010994588.1\|482643_483600_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176233
NC_003272.1\|WP_044520608.1\|473247_475278_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NC_003272.1\|WP_010994590.1\|484615_486823_-\|anthranilate-synthase	unknown	unknown	gnl\|CDD\|130874
NC_003272.1\|WP_010994585.1\|479387_480482_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NC_003272.1\|WP_010994576.1\|470216_471059_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010994575.1\|469799_470048_-\|UPF0175-family-protein	gnl\|CDD\|225440	COG2886, COG2886, Uncharacterized small protein [Function unknown].	1.3758e-24
NC_003272.1\|WP_010994580.1\|472690_473017_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|183845	PRK13019, clpS, ATP-dependent Clp protease adapter ClpS.	2.24009e-58
NC_003272.1\|WP_010994587.1\|481777_482590_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|178201	PLN02591, PLN02591, tryptophan synthase.	3.74584e-134
NC_003272.1\|WP_010994591.1\|487181_488579_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	2.13199e-75
NC_003272.1\|WP_010994572.1\|464673_466155_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235892	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional.	0
NC_003272.1\|WP_010994584.1\|478300_479365_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237376	PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase; Provisional.	0
NC_003272.1\|WP_010994571.1\|463057_464674_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223154	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].	2.49547e-150
NC_003272.1\|WP_010994579.1\|472355_472685_-\|hypothetical-protein	gnl\|CDD\|370734	pfam09876, DUF2103, Predicted metal-binding protein (DUF2103). This domain, found in various putative metal binding prokaryotic proteins, has no known function.	2.85977e-27
NC_003272.1\|WP_010994590.1\|484615_486823_-\|anthranilate-synthase	gnl\|CDD\|130874	TIGR01815, Includes:_Glutamine_amidotransferase, anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. [Amino acid biosynthesis, Aromatic amino acid family].	0
NC_003272.1\|WP_010994586.1\|480494_481724_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NC_003272.1\|WP_010994589.1\|483798_484671_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	7.56769e-140
NC_003272.1\|WP_044520605.1\|466678_469228_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.35816e-85
NC_003272.1\|WP_010994588.1\|482643_483600_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	7.22533e-145
NC_003272.1\|WP_044520608.1\|473247_475278_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	1.25032e-41
NC_003272.1\|WP_010994585.1\|479387_480482_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	9.42574e-165

>NC_003272.1|WP_044520608.1|473247_475278_-|FAD-dependent-oxidoreductase
MKRRHKVACLQTSLISLSLISGYLIPNSAIVAAPPRNPDKTVNCDILVVGGGLSGVATAYEGLLAGRRVCLTEITDWLGGQISSQGTSALDERPTQSQRQFYSRGYLELRNRIQKKYGKLNPGDCWVSDSCFLPRDAHTVMVELLKDAERRGKGKLEWFPNTVIKDLEISQGKLINSAIAIQHQPVKGSPPLNTFTLSQTIDDAYRYSNSSRFTKNIIRLVPQQTKENSPKWYIVDASETGEIIALADVPYRLGIDARSFLEPSSSSAKNDPYCTQGFTYTFAMEATKEAQPQKMPPYYLQYSPYFSYELPRLADFGLVFTYRRIWSPTKGEPVNFNGVRFSAPTPGDISMQNWTWGNDYRPGTAKDNLVYTRQQLQGTGQLKPGGWMGGLRTESLRKAEEKAFSYYYWLVAGTTDSQLGQGVKRPQTNNRFLAGLDSPMGTAHGLSKYPYMREGRRIIGRPSWGQPTGFTIWEVDISRRNYNDEYYRKTLPADMYRQLRATLAGLEATSVISGQVSPDKAMRRTRSTIFPDAVGIGHYAIDFHPCMEKSPPEAPGNRERPGERRGAGQAYPFQIALRAMIPQKIDNLIVGGKSIATSHIAAAAYRVHSFEWSAGAAAGTVAAFSLKNEVAPYQLVDDLPKSEPQLQALKRLLEKNGNPTAFPDTSIFNQNWENWR
>NC_003272.1|WP_010994580.1|472690_473017_-|ATP-dependent-Clp-protease-adapter-ClpS
MVTKLSIDVYAMSTAPTVTPERSNQTVRKTYPNYKVIVLNDDFNTFQHVAECLVKYIPGMTGDLAWDLTNQVHYEGQAIVWVGPQEPAELYHQQLRRAGLTMAPLEAA
>NC_003272.1|WP_010994579.1|472355_472685_-|hypothetical-protein
MGKSSSDHQKPVSRKKDGRLVWNHSTHIPGLIPILERLCQQDGIQTITPGVIGRVKGHSPKMQLRISVPIRGGYKIIARQGKTVQEVFILTPLAQDTLEAMIAIACGRA
>NC_003272.1|WP_010994578.1|471951_472284_+|hypothetical-protein
MQMHGVNFLCHGFVVAVSFVACIAGLMLLWDSKGTKDDEREETEKILFRMSFSYWLVYCVAFGLEKLVFPNYEPMIMTLKITTALSYFLTFSCILSLPLHRFAVRQEVQD
>NC_003272.1|WP_010994576.1|470216_471059_-|hypothetical-protein
MDSWLTDEVKQLLSQPCLTISSVIARRLNNRIKGSKQNIDERAFTEYLVDALDTSSLENVWGSVIGLLRDQNIYLNTNIRKSTKENKTGADIGLIIKRRINQNNSRSEIEYSCLIQCKRVDVNGQIDDFYHEVGLEKKTQSSLMLDITPSSFYFIFTPSCLLDIDYSLIPTAFIDTGKECSSPIWDMGHFGCDEIWFPLLSDSQIDSISGVLVVPALAVEAQINKSKDAKLEDILPNCMPLWYWFSEILVAGFAGDRRQDVINIAANSVKFSIEINIGNG
>NC_003272.1|WP_010994575.1|469799_470048_-|UPF0175-family-protein
MSVVISDEILQASQLTPSEFRQEIAIYLFQSGRLTLGYTSRLADMPLNAFRQLLKQRKIALYSYDVEDFELDLKNLQELGRL
>NC_003272.1|WP_044522688.1|469419_469683_-|hypothetical-protein
MSLQEILPTINQLSHQDKLRLIHFLLLELAREDGCTLELNNDDEATKQDLLKQLASTQAVVWSPQADSTSVQALSDLLAESQSIANA
>NC_003272.1|WP_044520605.1|466678_469228_+|TonB-dependent-siderophore-receptor
MKPGKILFLLLLTGSVWSLISHPGKTQEAPSPTQLNTQSPAPNAQELTQVTGVRVVPTVQGLEVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSEGNTFSQNNPATGVTNVTVVNHNDNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSPAEVDEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQGASNFGLTLRGRNPQVLIDGVPQSTTRNASRDLRTIDAAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRTEVGVSAALGNLEGDSFSTNLQHFISAKQGNFDFTFNFAVAKNGGFFDAQGDRIPSDPNAQGGFADASSINLFGKFGIDIDANQRLQLTFNRFDEKQDTDIASDPRVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFFPFDGRSFASLGNEIFQSRVESEKYGGRLQIETPLFNQGAAKLLWGVDYSQEDTSQPVSVFDQAAFVASGGLAFRKTGDRSWTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLNFNATLFNVGAVYALNPQLSVFANYAQGFSLSDIGLALRNAPPGFSVESLNPEPQKVDNYEIGIRGQWDTVQASLSAFYNESDLGTTFTAPGTVIRAPERIYGLEAAIDAQPSSTWQVGGTFTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNNTAFGRRPVESYLTVDYISSIKLGAGTLQLGLENLFNSQYFPVVSQLQANDSAYAAARGRTLSIKYSFDW
>NC_003272.1|WP_010994572.1|464673_466155_-|aspartate-aminotransferase-family-protein
MQLNHNGVHSEGHSFVLPQICPSQSSVESDFPSNRVRSVPGAASSHYLERQQARESNARSYPRRIRIAISEAQGIYLKDADGNVYIDCLAGAGTLALGHNHPVAIEAMRRVLDTGLPLHTLDLTTPVKDQFVEEIFASLPAEFAQNAKIQFCGPSGADAVEAAIKLVKTATGHRSVLSFHGGYHGMTHGALSLTGNLNPKQAVTGLMPDVHFLPYPYHYRCPFGLGGEAGQITSSRYIESILDDPESGIVTPAAMILEVVQGEGGVIPAPDDWLREMRRITRDRHIPLIVDEIQTGLGRTGKLYAFEHSGIVPDVLLLSKAIGGSLPLSVVLYNKALDKWSPGAHAGTFRGNQMAMAAGTATLQYILENSLTEHAAAMGDRLLKHLHQIQGETYCIGEVRGRGLMVGVEIINPQASADRRGKYPVHPQLASCIQAECLRRGLIVELGGRFGSVVRFLPPLIVTPAQIDSISEIFSSAVQAAEKQVLSVLSQVS
>NC_003272.1|WP_010994571.1|463057_464674_-|aspartate-aminotransferase-family-protein
MVIISRSSALPFPQGGAKEDTCVGGSPDLSKVSVTQRKKFDEFFVAGEGLREAIAAAGEVLIDYFATQEKPYSGRSPQDLTRTIADIAVCPDEGVALSQVLAEVGENIIKHSVVVTHPTCMAHLHCPPLLPAVAAEVLISGTNQSLDSWDQSPAATVLEQQVVNWLCASFGYDADADGIFTSGGTQSNFMGLLLARDAYARHQLNWSVQQQGLPPEAQRFRILCSQAAHFTISQAASLLGLGQQAVVTVETDSDYQLCAAAVEQKLEELQQQNLLPIALVATAGTTDFASIDKLPELAACAEKYGLWFHVDAAFGGALVMSDRHRDKLDGIALADSITVDFHKLFYQPISCGAFLVKQRQNFDLIKLHADYLNPETNEVASIPDLVTKSIQTTKRFDALKLFVSLRTLGRKQFAQMIDTTIELAKETASLIDAEPALELANNPTINAVVFRYLPSETPAHIDSTTWANQINSHIRMSLLQQGIAVIAQTKIGQLTYLKFTLLNPQTAIADIQEVLNSITTIGEKYLFHAQESKEGLSL
>NC_003272.1|WP_010994583.1|477035_477803_-|hypothetical-protein
MPDSNNSGGNSSTNELGSLLRQSPFGALLNIPGVTEETIIQAFGRAVGGSGNNPFGGSGAPTGGGAPAGGNPFSNFGNPNAPASPLTGGVNPWTAINQGNNSDPLTGGGNPFAGGSNPFAGGSDPLTGGSNPFAGGSNPFAGGSNPFAGGGENPFAGGSNPLTGGGNPFAGGSNPFAGGGENPFAGGSNPFAGGSNPFAGGSNPFAGGSNPFAGGSNPFAGGSNPFAGGSNPFAGGSNPFAGGENPFAGGSNPFA
>NC_003272.1|WP_010994584.1|478300_479365_-|3-deoxy-7-phosphoheptulonate-synthase
MIVILKNGTPAEEITRISEGLSEVWEVKVEKSIGKHKVILGIIGDTATIDTLQIQEFSPWIQQVMRVQKPFKRVSREFRYGEASEVIVNTPNERVYFGEHHPIVVVAGPCSVENEEMIVETAKCVKAAGAKFLRGGAYKPRTSPYAFQGHGESALGLLAAAREATGLGIITEVMDTADLAAVARVADVIQVGARNMQNFALLKKVGAQDKPVLLKRGMAATIDEWLMAAEYIMASGNSNVILCERGIRTFDSKYARNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPPMAAAAIAAGTDALMIEVHPNPARALSDGPQSLTFERFDRLAQEMSVIGKVVGRWPQPVLASVI
>NC_003272.1|WP_010994585.1|479387_480482_-|anthranilate-phosphoribosyltransferase
MVAVTQTPLDNISVTPDSNDWSAILQQLLKRQSLTVAQATDLMQGWLTDTIPPVLSGAILAAIQAKGVSSEELVGMARVLQSQSSYSPPHSPFPTPLIDTCGTGGDGASTFNISTAVAFVAAAAGVKVAKHGNRSASSKTGSADVLEALGINLNANADKVQAAVSEVGITFLFAPGWHPALKTVATLRKTLKVRTIFNLLGPLVNPLRPTGQIIGVNDPLLIEEIALALSHLGCRKAIALHGRERLDEAGLADVTDLAILQDGKVSCLALNPQELGLNHAPTEVLRGGDVAENAEILKAILQGKGTQAQQDVVALNTALALQVGEAITTTDIVEGCVKGIAIAREVLQSGAAWTKLEQLAEFLR
>NC_003272.1|WP_010994586.1|480494_481724_-|tryptophan-synthase-subunit-beta
MVSTPEIKNQLARPDALGRFGKFGGKYVPETLMPALGELETAYQKYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARPDGTGAQIYLKREDLNHTGAHKINNALAQVLLAKRIGKQRVIAETGAGQHGVATATVCARFGLDCVIYMGIHDMERQALNVFRMKLMGAEVRPVEAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPSIRLIGVEAAGEGVDTDKHAATLTLGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTVAKVLNY
>NC_003272.1|WP_010994587.1|481777_482590_-|tryptophan-synthase-subunit-alpha
MPTISDHFQSLRQRQQCALIPFITAGDPDLQTTAEALRILDRHGADFIELGVPYSDPLADGPVIQAAATRALQRGTKLEQVLEMLETVIPSLQAPIILFTYYNPILHRGIQSFLETIAAVGVRGLVVPDLPLEEAEELIKTAANFGIEVILLVAPTSSQNRIEAIARQSQGFIYLVSVTGVTGIRSQIQDRVQHLITDLRHVTDKPIGVGFGISAPEQARQVKEWGADAVIVGSAFVKRLAEGSPSQGLQAVEKLCQELKTAITRVEARV
>NC_003272.1|WP_010994588.1|482643_483600_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MRAMAIANFGSPEVFTEVEVNKPTPANNEVLVKVYATSVNPADCGMRRGFFGPRVQLPAILGFDVSGVVEAVGENVRDFQVGDEVYYAIPHELGGGANAEYHAFPSSMIAKKPNNISHLEAATVPVAGGTAWAALITRANLQVGETVLIHGGAGGVGTFAIQIAKAAGAYVYTTCGGYDIDFVKSIGADRAIDYRNEDFTNIIMQETGGAGVDITFTTVAGETLAKSLLVTKENGRAVTITGVTGDLNTAIFKNITIHFVHLDDTHSKLNALRSLIERRQIKPIFGITYPLNQLAAAHKKLEEGGQGIRGKIAIEVNS
>NC_003272.1|WP_010994589.1|483798_484671_-|indole-3-glycerol-phosphate-synthase-TrpC
MWCKNIHKVNSQQFPSMTNQIAPPRHILQEIVLHKQQEVTQLQQELPLVTLQQQLTIAPPVRDFLKALQDNSHKPSLIAEVKKASPSRGIIRLDFDPVAIAQSYQKGGAACLSVLTDEKFFQGSFDNLRLVRQQVSLPLLCKEFIIDSYQIYLARTFGADAVLLIAAILSDEELQEFLKLIHELGMTALVEVHTLAELDRVLKLKDLRLLGINNRNLEDFTVDLKITQQLLSQRQQEIENLNLTIASESGIYTPADLSFVAGVGARAVLVGESLVKQTDVEEATRSLLVA
>NC_003272.1|WP_010994590.1|484615_486823_-|anthranilate-synthase
MIADSHSYRTNGNVRVSRSITQVKMETALEEILFYLNSQRGGLLTSSYEYPGRYKRWAIGFVNPPVELSTSGNTFTLTALNERGYVLLPVIFECLSKSEQLQKLTEHHHKITGLVKSTPEFFAEEERSKQPSTFTVIREILHIFSSQEDEHLGLYGAFGYDLVFQFEQITQCLERPQDQRDLVLYLPDELIVVDYYQQQAFRLEYDFITAHGSTYDLPRTGESVDYRGQCLTPPQNADHKIGEYAKLVEFALDYFRRGDLFEVVPSQNFFTACEAPPSQLFETLKQINPSPYGFIFNLGGEYIIGASPEMFVRVEGRRVETCPISGTITRGHDAIDDAVQIRQLLNSHKDEAELTMCTDVDRNDKSRICEPGSVKVIGRRQIELYSHLIHTVDHVEGILRPEFDALDAFLSHTWAVTVTGAPKRAAIQFIEKNERSVRRWYGGAVGYLNFNGNLNTGLILRTIRLQDSIAEVRVGATLLYDSIPQAEEQETITKAAAAFETIRRAKQIDPQIEESSTRKLSKYLPDGQSGKHILLIDHEDSFVHTLANYIRSTGATVTTLRHGFSESLFDTERPDLVVLSPGPGRPSEFKVQETVAACVRRQIPLFGVCLGLQGIVEAFGGELGVLNYPQHGKSSRIFVTAPDSVMFQDLPESFTVGRYHSLFALSQRLPKELKVTAISDDEVIMAIEHQTLPIAAVQFHPESIMTLAGEVGLMMIKNVVQKYTQSQQSTVPIYD
>NC_003272.1|WP_010994591.1|487181_488579_-|alkaline-phosphatase-family-protein
MQKTVILNVVGLTPKLICEHTPFLSRWSSTGKIATVTPVLPAVTCTAQATYLTGKSPDEHGIVANGWYFRDECEIKFWRQSNKLIQAPKVWEIAKEIDSDFTCANLFWWYNMYSSVDYSVTPRPMYPADGRKLPDIYSQPENLRSRLQIDLGQFPLFNFWGPNTSIRSTQWIADSAKFLDGRCDPTLTLVYLPHLDYCLQKYGTDITKIAKDLQEIDAICSDLIQFYENRGAQVIVLSEYGITSVSQPIHINRVLREHGLLTIREELGRELLDAGASKAFAVADHQVAHVYVNDPYYIPQVRSLLENIDGIADVLDETQKSYYHLNHSRAGELIAVSQPDAWFTYYYWLDDRRAPDFAKTVDIHRKPGYDPVELFLDPEIKLPQVKIATKLLQKKLGFRYLMDIIPLDAELVKGSHGCLPPSPSQSPLLITQQSHLFDSTAISATDVYQLILKHLMVNSNQMSCI
>NC_003272.1|WP_044520613.1|488667_489912_-|metabolite-traffic-protein-EboE
MQIESNNNLHLTYCTNIHPGEEWEKVFANLKQYLPPLKARLAPEKKFGVGLRLAEVAARELLQGNTLTGFKSWLAEQDLYVFTLNGFPYGQFHWQVVKDLVYAPDWSEQKRLDYTLQLMQILAELLPPGMEGSISTLPLSYKPWFEGNQLAQASVMLNASQQIAQVVEQMVRIRVEQGKILHLNLEPEPDGLLENAAEVVDFFQMYLLPVAGAYLIKQLGITQELAENYILDHLRICYDTCHFAVEYEDPLSVLLQFKAAGIKIGKIQISAALQVKIPTAIEKRRLLIERLHPFAESTYLHQVIGRTSNNRLIHYQDLETALPNLENTTDKEWRIHFHVPIFMSDYQLLQSTQHDIVNVLDLLQHHHFCNHLEIETYTWEVLPDEMKLNLPASIQREYEWVMNKLLLKQLVAFP

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Crispr_ID: NC_003272_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_4

807451-807558

Orphan

I-D,II-B

Consensus_repeat	Method
CATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_4

>merge|NC_003272|4|807451-807558|CRISPRCasFinder
CATTGCAATTAACTAAAATCCCTATCAGGGATTGAAACATCCCACAGGTTATTCAGCCTTGCTATTGCATCATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC

>NC_003272|4|3|807451-807558|CRISPRCasFinder
CATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC	ATCCCACAGGTTATTCAGCCTTGCTATTGCAT
CATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010994887.1\|828695_829595_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994881.1\|811998_812985_-\|acetamidase/formamidase-family-protein	unknown	unknown	gnl\|CDD\|225279
NC_003272.1\|WP_044520705.1\|814581_815118_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994871.1\|803284_804436_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NC_003272.1\|WP_010994867.1\|798760_799237_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|223766
NC_003272.1\|WP_010994874.1\|806011_806353_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NC_003272.1\|WP_010994875.1\|806343_807189_+\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479
NC_003272.1\|WP_010994878.1\|809101_809473_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_003272.1\|WP_010994870.1\|803005_803254_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|223375
NC_003272.1\|WP_010994872.1\|804489_804705_+\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|224853
NC_003272.1\|WP_010994868.1\|799263_800436_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271320
NC_003272.1\|WP_010994885.1\|821087_826487_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_003272.1\|WP_044522736.1\|809813_811856_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_003272.1\|WP_044522734.1\|807765_809010_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_003272.1\|WP_010994886.1\|826760_828683_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|223520
NC_003272.1\|WP_010994869.1\|800535_802893_+\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NC_003272.1\|WP_010994884.1\|815624_821015_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_003272.1\|WP_010994866.1\|797711_798701_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994873.1\|804889_805993_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|273984
NC_003272.1\|WP_044520703.1\|813019_814375_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010994881.1\|811998_812985_-\|acetamidase/formamidase-family-protein	gnl\|CDD\|225279	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion].	9.24621e-135
NC_003272.1\|WP_010994871.1\|803284_804436_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NC_003272.1\|WP_010994867.1\|798760_799237_+\|NifU-family-protein	gnl\|CDD\|223766	COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones].	7.43309e-25
NC_003272.1\|WP_010994874.1\|806011_806353_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	1.15262e-40
NC_003272.1\|WP_010994875.1\|806343_807189_+\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	1.10257e-119
NC_003272.1\|WP_010994878.1\|809101_809473_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	2.1198e-08
NC_003272.1\|WP_010994870.1\|803005_803254_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|223375	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	7.90568e-31
NC_003272.1\|WP_010994872.1\|804489_804705_+\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|224853	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only].	1.86177e-21
NC_003272.1\|WP_010994868.1\|799263_800436_+\|hypothetical-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.1707e-14
NC_003272.1\|WP_010994885.1\|821087_826487_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_003272.1\|WP_044522736.1\|809813_811856_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	9.7575e-22
NC_003272.1\|WP_044522734.1\|807765_809010_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.97577e-130
NC_003272.1\|WP_010994869.1\|800535_802893_+\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NC_003272.1\|WP_010994884.1\|815624_821015_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_003272.1\|WP_010994886.1\|826760_828683_-\|Hsp70-family-protein	gnl\|CDD\|223520	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones].	5.69991e-74
NC_003272.1\|WP_010994873.1\|804889_805993_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|273984	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.	0
NC_003272.1\|WP_044520703.1\|813019_814375_-\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.25504e-44

>NC_003272.1|WP_010994875.1|806343_807189_+|hydrogenase-nickel-incorporation-protein-HypB
MCVTCGCSDESEDKITNLETGEMVHNHHHHTHTLADGTVITHSHSHEQEPSQIHAKIHNTTISLEQEILGKNNLLAAQNRGWFKGRNILSLNLMSSPGAGKTTLLTQTINDLKHQLPITVIEGDQETINDAEKIKETGCKVVQINTGTGCHLDASMIERGLQQLNPPINSVLMIENVGNLVCPALFDLGEQAKVVILSVTEGEDKPIKYPHIFRASEIMILTKIDLLPYVNFDVQRCVEYAKQVNPNIQIFQVSATTGLGLDTWYKWLTNKVANSSVPVFP
>NC_003272.1|WP_010994874.1|806011_806353_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MHELGITQNIVAIVSEYAQGSKVNRILLEIGKLSAIMPDAVQFCFDICSKGTSLEGAVLEIREIPGLAKCRQCGAEIALEKPFGICGCGSVHLDVITGEELKIKEIEVEEVCV
>NC_003272.1|WP_010994873.1|804889_805993_+|hydrogenase-expression/formation-protein-HypE
MDFSKTNSVPNPLFQKIEQVRRRPGKVRDTHITLAHGSGGKAMRDLIDDIFVNNFDNPILSQLEDQATINLSTLLQQGERLAFTTDSYVVDPLFFPGSDIGELAINGTINDLAVSGAKPLYFTCSVILEEGLPIETLRRVATSMKVAAQKAGVQIVTGDTKVVPRGCADKLFINTAGIGIIPSGIDISAHNIQPGDSIIINGELGNHGAAILIARGELALETNIESDCQALHDLVATILNVCPQVHAMRDATRGGLATVLNEFATSSHVGIRLYEESLPVREEVKGMCEILGLDPLYLANEGKLVVVVDSEQAQAVLSAMKSHPKGRDACIVGEVMATPPGVVFLKTTFGTERIVDMLVGEQLPRIC
>NC_003272.1|WP_010994872.1|804489_804705_+|4-oxalocrotonate-tautomerase-family-protein
MPFVTVKIARGHSIEKKRHLVEAITNALVTALDTKPEWITIHIDEFERENWAVNGILHCDRHRGRHDETGR
>NC_003272.1|WP_010994871.1|803284_804436_+|hydrogenase-formation-protein-HypD
MKYVDEFREPEKAEALRREIEKLSQQLDKHIKIMEVCGGHTHSIFKYGIEEILPANIELIHGPGCPVCVMPKGRLDDAIAISQNPNVILTTFGDTMRVPGSKTTLLQAKAQGADIRMVYSPLDSLQIARNHPDKEIVFFALGFETTAPSTALTILQAASENITNFSMFSNHVLVIPALQALLNNPDLQLDGFIGPGHVSMVIGTEPYEFIAQQYHKPIVVSGFEPLDIFQSIWMLLQQLVENRCEVENQYNRLVQKGGNQIALAAMHKVFAVREKFAWRGLDEIPDSGLKIREEYAQFDAELKFTIPNLKVADHKACKCGEILKGVLKPWQCKVFGTACTPETPIGTCMVSSEGACAAYYKYGRFSTTLQKQAAEKPKVTISS
>NC_003272.1|WP_010994870.1|803005_803254_+|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLGIPGQITEITDINHKLAIVDVGGVKRQVNIACIVDEQHPPEACLGDWVLVHVGFAMNRINEQEAAETLKLLQEIAALQA
>NC_003272.1|WP_010994869.1|800535_802893_+|carbamoyltransferase-HypF
MATEEIRVRGTVQGVGFRPTVYRLAKACGLRGDVCNDGEGVLIRVCGDEGALTEFVARLQQECPPLAKINELIRTPYQGELNFHDFVISHSVSGVVRTEITPDAATCPECQREIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVMCPECEDSYHDVENRRFHAQPVACHTCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVAIKGIGGFHLACDATQEAAVEKLRQRKRRYDKPFALMARDINVIEKYCFVNDRERELLVSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLPYTPLHHLILKRMNRPIVLTSGNIADEPQCVANDEAKEKLSHIADYFLLHNREIVNRVDDSVVRVIDNKIQIMRRARGYAPAPIKLPPGFDNIPQILAMGSELKNTFCLLREGEAILSQHLGDLENALAFDCYQDTLNLYLNLFQHQPEVIAVDLHPEYLSTKLGKELATANQIQLQFIQHHHAHIAACMAENGIPLDSSPVLGIAFDGLGYGTDGKLWGGEFLLADYTQFQRLATFKPVAMIGGKQAIYQPWRNTYSHLLSANIWDDCQQNYNNWEIIKFLQQQPINLLNQLVEKGINTPLASSVGRLFDAVAGAIGICSEKCSYEGQAAIALEAIADIHTLNNPKETAIYPFKFTFSDNIYCIDSCLMWPLLLDDLQQHTPQSVIAAKFHLSLSNVIVETVKYLGQQNLFNQVALTGGVFQNSILLQLVTKQLQNLGIKVLAHSVVPTNDGGLSLGQAIITAARLIKQ
>NC_003272.1|WP_010994868.1|799263_800436_+|hypothetical-protein
MQPELTKTPANFPLSPLGAVVILGDIPNPELLAIPLAPTPSTMFGPRGACLVAETGALWVSDTGHHRLLGWRKLPTTDSQPADWVIGQPDFYHEGQNAKGTPGRTTVSVPTGICVCGGGLAIADAWNHRVLIWHKIPEDSNVPADLVLGQRNFSENEPNRGKQSPDANTMHWPYGVAYHQGKLFVADTGNRRLLIWQQLPTENGQPADIVLGQPDMISRNENGGGSPTAGSMRWCHDIAFWDDNLVVTDAGNNRVMIWQGIPTENNAPCAVVLGQKSFDLVEMNQGVYFPSAGSLSMPYGVGATEDWLMVADTANSRLLGWRKRESILLLQGAIADGIIGQNSFQSKSENRHFGLPTRDSLNWCYGVKVCGSTAVISDSGNNRVLLWRFL
>NC_003272.1|WP_010994867.1|798760_799237_+|NifU-family-protein
MTNLEDLVTEISRYEAIISQWDETQRGVVVGLKRAIEDLHQEALKRLIKSVKQECLPALQNAVQDEVVYGVLLYHGLVKQPQPPLLQRVQAALEEVRPGLKDHHGDVELVAIKPPDTVEVRFIGTCSSCPASTLTLSQGVEQAIKALCPEIVTVIAVK
>NC_003272.1|WP_010994866.1|797711_798701_+|hypothetical-protein
MTPSITDSTVKAALAAIASESATTEEKIQMLIELAQGLQKKPKTPGDLWNAVELYQQAIKMCGGDYSLWKARSQAGMAGALKSIPDVGAELLLQAKAGYEEALPVLRQLAAAVEVAEAQMNFGLVLQSLVPFNLARITDSIAAYQEAMGVFTSQDYPQEYAILANNVAIAYLSMSGGGEQQNLYAGLAVQTFESALKQINLIDHPREYAMLQNNLGNALQYLPSSHPVENNLRAIAAYNEALKVRTCQGTPVEYANTIANKANALFNLPDDPEKPELGNSQNLLQARAYYQEAWEIFSQCQQMEQAEAVAQALHEVAAEIRISMSNGDK
>NC_003272.1|WP_044522734.1|807765_809010_+|trypsin-like-peptidase-domain-containing-protein
MQNQVHDESQPLNPKNHNHAPWKKAAASLSLVLLGSGMTLAGGYLAGNQQQLAQKASDLAVSRVDAAPPLGNNTDPNFVTQVVQRVGPAVVRIEASRTVTSRLPAEFNDPFFRRFFGSQLPQQQERVQRGTGSGFLISADGSILTNAHVVDGADTVRVILKDGRSFQGKVLGTDNLTDVAVVKIQANNLPTLTVGNSDQLQPGQWAIAIGNPLGLDNTVTTGIISATGRTSNQIGAPDKRVEYIQTDAAINPGNSGGPLLNYRGEVIGMNTAIIQGAQGLGFAIPIKTAQRISNQLIATGKVQHPYLGIQMVGLTPQIKQNINSDPNSGLTVDRDKGVLVVRVLPNSPAARAGLRAGDVIQKLNGQAVTDASNVQRAVENAQVGGQLQLELWRNGRNLNLAVQAGAFPTQQQVK
>NC_003272.1|WP_010994878.1|809101_809473_-|sulfite-exporter-TauE/SafE-family-protein
MSNLLVQLLLIGLAAGVAGGMFGIGGGAIMVPAMVLLMGLDQKFATGTSIAAQILPIGLLGAAVYHRSGNINFKYAVIIAVGLLVGNLFGAMFANQPFITSETMKKLYGVFLLAIGFRYLLVR
>NC_003272.1|WP_044522736.1|809813_811856_+|pentapeptide-repeat-containing-protein
MPQDFSHQNLRGRSFKGQNLVGVNFSYADIQGVDFSGANLRGANFSCTKTGLQSTWRTCLAVICLLLALISGVICAFAGGYLGFLLVNPNWLNKATGLLLMVGFAIFFTVGVSKSLTDAFYVSGLLLILAFTGGVLTSGSGTGSGAGYFAFSMIGMLTGVMLGAIAIAEAWDLFGTFTVLGVLLSTIFGALIYSTMGRGAVVEARFLALVFALIFIGFSTYIGHRILKNHEIDGWMRTILIFLATIGGTNFRNANLTDANFTGSILKSTDLRKANLTRTSFHKVNQLDRVLPGFTYLQNTKIHQLLITGQGQEQQLERQDLRGVNLQGANLADANFIGADLSQANLQDADLSRAKLVQTQLDGTDFTGAILTGAYIEDWGITTDTKFDGVRCEYVYMRLPTQDNPDPHRKPDNRQEVFADGEFGDFIQPIFDTLDLYHNQGVDPRAIAISFKELAENHPEAELEIVAMEKRGQDKILLRAKTATQADKSELSAEYFTTYNQLHTLAQQELQALIAEKDSRISDLQTMVMTALQRPSFYAQTYQNQGDTVMSESSKQVFHNSLPNAQFGGGLVNADTVTGQQIATGNMTNNSPQQKQNLAAAATEIQQLLNQLSQTHPTTTTSEKMTVVAKVVDEIESNPTLKARVVGALKAGGIEAFKEMIDHPLVNILLASIDGWQEAE
>NC_003272.1|WP_010994881.1|811998_812985_-|acetamidase/formamidase-family-protein
MTHHILKATKSTVHLGGFSHLLEPALKVDSSDTIDVETYTGYYIYDKAPPEFLTPEFLDICQNLPPERKIAAGPHLLTGPIYVKDAEPGDVLEVKLEAIAPSLPVGFNAIRSGWGALPNQFTQPALRFIPLNLANNTAEFPPNSGIKIPLTPFFGILGVATPENARSSVPPGYYGGNIDNRELQAGSRIFLPIFVPGGLFSLGDGHSAQGDGEVNVTAIETSMNGRIQLTLRKDLHFTAPIAETPTDIITMGFAPTLDAALEQALKNMIDFLERFVNLSPEDAYVLCSLAVNFRITQVVNSPNKGVHGLLPKKLFEEAVSIKPFIRRS
>NC_003272.1|WP_044520703.1|813019_814375_-|PAS-domain-containing-protein
MTPDQFLTFAQVLPEPLVLITSTGEILAVNQAATKLFSKTSKALIGQQLSEFVTDSPQKVSDYLRVCAQSRQMILGAFTIHQAVGEGIACRSQGAVIQPRSHDSPAINLLRLEKRKGNEFVVLNQKIHALSQEIQQRQRIQLELAQSNETLKHTLIKLQNALESVQKEKMSGLGQLVAGIAHEINNPITFIHGNLTYASEYYDDLLNLIHLYQQEYPHPSKVIQETIETLELDFLQKDIENLLSSMMMGSQRIAEIVKSLRNFSRLDEATFKLVDIHEGLEATLMILQSRFNPSTQYSKIEVIKEYGELPLVFCSPGQINQVFMNILNNAIDALEEAEQLRSGGSPSPESTQNYSSRIWIRTEKLSDRYIAIRIKDNGNGIPAQIHHQIFNPFFTTKPIGQGTGLGLSISYQIIESHHGRINMMSDSAWGTEFSIELPIVEESDRNYGNPF
>NC_003272.1|WP_044520705.1|814581_815118_-|hypothetical-protein
MIQTSPLDHQVQSLELPIERDQFLRTIIRELAGTLQDVVGIEEAAGFLNVVGYRTGQQVNQIYHNGLQLSNLSREQVTAVLVDWKRRIQGDFYVIEESDEKIVLGNRKCPFAEQVEGREAMCVMTSNIFGAIAADNLGYARVELQDTIARGGKECTVVIHLKPSESLDGFAGQEYFKA
>NC_003272.1|WP_010994884.1|815624_821015_+|AAA-family-ATPase
MTSTLVEKIPGYNINEELYHGSRTLVYRGYREVDQQAVVVKLLKNPYPSFNELLLFRNQYTIAKNLNSPLIVQTYSLEPCKNGYALVMEDFGGISLKEWGTRETQQSLEEFLMIAIALCNILDLLYHQRIIHKDIKPSNILINPQTKQVKLIDFSIASLLPRETQTLVNPNVLEGTLGYISPEQTGRMNRGIDYRTDFYSLGVTFYELLTGGLPFASNDPIELVHSHIAKIAPLAHEINSEIPSVLSKIVSKLMEKNAEDRYQSALGLKFDLEKCLIQLKETGKIESFDIASRDVCDRFIIPDKLYGRENEVQSLLQAFERVAGGSSELMLVAGFSGIGKTAVVNEVHKPITRQCGYFIKGKYDQFNRNIPFSAFVQAFRSLMGQILSASDIELAHWKEQILATVGENGQVLIEVIPELEYIIGSQPPVIELVGSASQNRFNLLFGKFIRVFTKKEHPLVIFLDDLQWADSASLHLLKLLMSESETGYLLVLGAYRDNEVFPAHPLMLTLNEIRQTGVNLNTLMLAALNELDVTCLVADTLQCANNIAAPLSHLVYQKTQGNPFFTIQFLYGLHEEECIIFNPASGYWQCDLTQVTQLALTDDVVEFTIRRLQRLPEATQQVLKLAACIGNRFDLETLAVVCEATPESVAADLWRSLQEGLVIPENSTYKFFQGKGHDVETVDNISVSYLFLHDRVQQAAYSLIPETLRQATHFQIGKLLLANVSPEEQGSKIFAIVNHLNEGLILHQSQEERSELLQLNLIAGRRAKESTAYGVAVNYFTVAQSLLPPDSWQQCYEKTLDVYFNLAEVKYLSGDFQSSLAIVETISSFAKQQIDRAEAFNLAILMFTLQGQYLQALEYGQKALSCLNFDLSEIDLPEKLESYQREIELKLGDRPIDQLVDEPEATDPEKRLIIKILNNLIVPVYVLQKGELYFVVALSMVSVSLNFGVVAESGNGFSAYGMYLGFYQRNYQSGYEFGVLAESLAKRFKQAENLCKACYMLGNNLLSWVRPLRCSLPIFDQGLVAGLQSGEMVFSGNLLMYKLLNSFYAGESLLEIQQNLPEYLEFCAKKLNYQLPVDVLSGLKIALAELTASGAENIPTEQQHLEVCRINNSDYAICHYLLLKTKILCLYGRYDEALESAQGAEDLVGTITGKYQVAAINFYQSIAIAEYCRVHALGLDNSYIQKVKSNQAQLSLWAASCPENFAHKYDLVNAVLSVLSGQKTEAIELFDSAISGAEVNSYLQEKALANELAGKFCLEWGKQKFAAGYIQEAYYCYEKWGAKAKVVDLEKRYPQLLTPILQPTLSTLSINETIITLGTVTSKSGSTSNSSVSDTLDLTAILKASQTISGEIELEKLLASLLRIVIENAGADKCVLMLLQDSHLLIKGSITQETQPVVLQNLRVEESQDIPHKLIYKVKHSNQTVVLVDATAEPILANDSYILRQQPQSILCSPILHQGKLLGILYLENNLTKGAFTSDRIEILNLICAQAAISLENARLYESAQEYAQKLEQAFTDLQNAQLHIVQSEKMSALGNLVAGVAHEMNNPLGFISATLQQTKPNFADITEHLRLYQENLENPGDEIQDHAEEIDLDFMLEDLPKTIDAMVMAWDRLKNISTSLRTFSRADRDYKVPFNLHEGIDSTILILKHRLKANDQRPAIDVITNYGDLPLVNCFPGQLNQVFMNILANAIDALEEANIGKSFTEITAHPNRITITTSIIDHQSVKISIADNGKGMSAEVKNKIFDHLFTTKSVGKGTGLGLAIARQIIEEKHGGKITVNSVLGEGTELSIQLPV
>NC_003272.1|WP_010994885.1|821087_826487_+|AAA-family-ATPase
MTRTLVENIPGYSISEELYNGSRTQVYGGYREVDQQPVVIKLLKNPYPSFNELLLFRNQYTIAKNLNSPLIVQNYSLEPYQNGYALVMEDFGGISLKKWGTRQTQQSLEEFLVIAIALCDIFNLLYHERIIHKDIKPSNILINPETQQVKLIDFSIASLLPRETQTLVNPNVLEGTLAYISPEQTGRMNRVVDYRTDFYSLGITFYELLTGELPFASNDAMELVHSHIAKTVPLAHEINLDIPSVISEIIRKLVAKNAEDRYQSALGLKFDLEKCLTQLRETGEIQSFEIASRDVCDRFIIPDKLYGRETEAATLLQAFERVSNGATEMMMVAGFSGIGKTAVVNEVHKPIVRQCGYFIKGKYDQLKRNIPLSAFVQAFRDLMGQLLSESDTKLLQWKEKILSALGENGQVLIEVIPELEQIIGKQPAVLELSGSAALNRFNLLFGKFIALFATQQHPLVMFLDDLQWADSASLSLMQVLMSQSEMGYLLIIGAYRDNEVFAAHPLMLILEEMKKDLAIISTLTLAPLSQSHVNHLVADTLSCTKVLAQPLSELVYQKTKGNPFFATQFLKALHQDGYIAYDFNVGHWQCDIAAVKLLSLTDDVVQFMALELQKLPDATQNVLKLAACIGAQFDLEILAIVSEFSATDAATALWKALQSGLILPTSQTYKFFQGTQQSDLEDTVNPTYRFLHDRIQQAAYSLIPDNQKQATHLKIGQLLQQNLPEIEKEEKLFDIVGHLNLAIELITQPRELEALARLNLAAGQKARNSTAYANARSFLQTGLELLAVDCWQHQYELTLNLYVAAAETAYLNADFEGMIEMATEVLQSAQNILDKVKIYEIQISALTAQSQMLKAIAVGRNALEQLGVEFVSEPNEALISKALQTLADQLQGKQISELIHLPVMSNPRIIAAMQLLAMLFAPIFLANPTLFPSLCSTMVSLSLQFGNTTASTLGYIGYGKVLSSFLGEVKTGYDFGRLALSLLNQLNAQEFKSQTLLVFGAFLQHRQEALREIIPTLKAGYLAGMETGNFLTAGYHLSIYFYNRLFTGVALDDWELEIENYCVILATVKQDSPLTYLRVTQQTAQNLREIVNQPDLLSGTAYNEMVMFPKHHQNNEFTILAVAYTYKLMLAYIFGNYTNALDYITQANRYLMAATGMLQIPVFHFYAGLTYLTLYSTHSESEQANTLALAETHQTILAQWAHHAPMNYQHKVDLIKAEKCRVLGQKTEASELYDKAISLAKVNEYFQDEALSNELAAKFYLDWGKQRIAGEYMIEAYYSYTRWSAKAKVADLEKRYSQLLAPILQQTRSTLSTHETIVAVGTVTSSSGATSSTSVSDTLDFKTILKASCTISSEIELEKLLASLLRIVIENAGADKCVLMLLQDDYLLVQGSMSQGTQPIVLQRIPVEDSQDIPHKLIYKVKHSQQTVVFLDITTDTTLANDPYIIHQQPQSILCSPILHQGKLIGILYLENSLTTGAFTSDRIEILNLICAQAAISLENARLYESAQEYAQKLEQAFTDLQNAQLHIVQSEKMSALGNLVAGVAHEMNNPLGFISATLQQTKPNFADITEHLKLYQENLENPNREIQDHAKEMDLDFLLEDLPKTIDAMIMACNRLENISTSLRTFSRADKDYKVKFNLHEGIDSTILILKHRLKANQQHPAIEVITNYGDLPLVNCFPGQLNQVFMNILANAIDALEEANIGKSFAEITAHPNRITITTSIIDHQSVKISIADNGKGMSEEVKNKIFDHLFTTKSVGKGTGLGLAIARQIVAEKHGGKITVNSVLGEGTEFTIYLPI
>NC_003272.1|WP_010994886.1|826760_828683_-|Hsp70-family-protein
MEILETVGFDLGHGETAVAKAIVESIEPPQMLEINHKKNQVTALGWHPQLGYLVGEQALIQAGVTQLAITFKQKPNNDPKYRKTISTFIATYYHLLKESRQIETQDTTYFYVGCPSGWSVKERSEYQQLLQEAGIPLLNVVPESRAAFMQAKEAGKLEYEKLISSVLIVDIGSSTTDFTLVKSLQEIPLDFGNNALGASLIDKAIFAKTLAKHEQKPLLEKVFKEYPHHQARCELACRKAKEDYFSNEQLYSDSQSFARGFESINEQIYFIPQVNKLMMEEILNQPLSELGEKSWLQSFHAALNEAKQKLDQQGITPKLVLMTGGASRMKFTHQLCQEFFPEPQTLLRPDPEPERCIALGLARVGRWDLRANAFKQEVNKLLESNQLKELIGKHIPELIKSLTQPLAEGLIENAVRHGVKDWQKNQIRTLADLETSMKQRAEEWLQSDIAQKIVNNQCISWFNQKIQPDLAAETDPICRQFHIPRSSLRFEDSIEPALVNPELRIGDAILGETVAFIVNVLIGGGTLASIITLILTGHLTWPIALVYGASVIAAGMELNRETVKEAIKTNVNIPSWIRSSFVNDRKIDDICKQVNPELEKVIQEQLTANQDAFDKLISKVEEGLQKALSTKVQEAIILIQ
>NC_003272.1|WP_010994887.1|828695_829595_-|hypothetical-protein
MKTITSLFSEESNQLQTEINNLSNIEDVVKLVQNKLDNIERIYISELNITQVRLAAFFLDVLRQSIPILGAVEIDQIETVEHKQITNLALTSSPHRLILKVLKVLLYVGILGWLFYLTNTTPGAWMGILLASVLLGLEVVLQLEKNDANLPEVKEVARPTPTVESTILLAQLADALNTIDLVVARFAESDKAKDERNMEELPELLNFLQRLMGASSLNKPQMVMELTKLLPQILMSQGIRAQIYQAKAPYGDRTYFDFEPSIDPDNQDYVTITPALLKGDRLLRRGRVIEPAYSQARES

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Crispr_ID: NC_003272_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_5

875039-875149

Orphan

Consensus_repeat	Method
ACCAAAAAGCGATCGCGCTTTCCCAACATTACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_5

>merge|NC_003272|5|875039-875149|CRISPRCasFinder
ACCAAAAAGCGATCGCGCTTTCCCAACATTACACAGGCGATAACTTCGTTAAGCTGCGCTAACGCACTCTCCAAAAACCAAAAAGCGATCGCGCTTTCCCAACATCACACA

>NC_003272|5|4|875039-875149|CRISPRCasFinder
ACCAAAAAGCGATCGCGCTTTCCCAACATTACACA	GGCGATAACTTCGTTAAGCTGCGCTAACGCACTCTCCAAAA
ACCAAAAAGCGATCGCGCTTTCCCAACATCACACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010994934.1\|881706_883038_+\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_003272.1\|WP_044520716.1\|868980_869364_-\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319925
NC_003272.1\|WP_010994917.1\|864310_865951_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NC_003272.1\|WP_010994922.1\|870939_871410_-\|PAM68-family-protein	unknown	unknown	gnl\|CDD\|371813
NC_003272.1\|WP_010994930.1\|876252_876519_+\|BrnA-antitoxin-family-protein	unknown	unknown	gnl\|CDD\|373040
NC_003272.1\|WP_010994927.1\|875160_875556_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|226267
NC_003272.1\|WP_010994933.1\|877322_881312_-\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_003272.1\|WP_010994919.1\|868011_868893_-\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NC_003272.1\|WP_010994936.1\|883816_884533_+\|bidirectional-hydrogenase-complex-protein-HoxU	unknown	unknown	gnl\|CDD\|181037
NC_003272.1\|WP_010994924.1\|871941_872484_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_003272.1\|WP_044520718.1\|875552_875819_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994925.1\|872574_873069_+\|bidirectional-hydrogenase-complex-protein-HoxE	unknown	unknown	gnl\|CDD\|236053
NC_003272.1\|WP_010994923.1\|871422_871692_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_003272.1\|WP_010994932.1\|876868_877210_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_003272.1\|WP_044520719.1\|883178_883646_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994931.1\|876672_876882_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010994918.1\|866399_867884_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NC_003272.1\|WP_010994926.1\|873379_875014_+\|SLBB-domain-containing-protein	unknown	unknown	gnl\|CDD\|224806
NC_003272.1\|WP_010994929.1\|875993_876269_+\|BrnT-family-toxin	unknown	unknown	gnl\|CDD\|225481
NC_003272.1\|WP_010994921.1\|869617_870676_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237376

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010994934.1\|881706_883038_+\|AAA-like-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	0
NC_003272.1\|WP_044520716.1\|868980_869364_-\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.27851e-14
NC_003272.1\|WP_010994917.1\|864310_865951_-\|FHA-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	2.6929e-67
NC_003272.1\|WP_010994922.1\|870939_871410_-\|PAM68-family-protein	gnl\|CDD\|371813	pfam11947, DUF3464, Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.	1.55712e-83
NC_003272.1\|WP_010994930.1\|876252_876519_+\|BrnA-antitoxin-family-protein	gnl\|CDD\|373040	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system. BrnA is family of antitoxins that neutralizes the toxin BrnT, pfam04365. It consists of 3 alpha-helices and a C-terminal ribbon-helix-helix DNA binding domain. As in other toxin-antitoxin systems, BrnA negatively autoregulates the brnTA operon and has higher affinity for the DNA operator when complexed with BrnT. It dimerizes with two molecules of its toxin BrnT.	0.000238129
NC_003272.1\|WP_010994927.1\|875160_875556_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|226267	COG3744, COG3744, PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms].	2.60401e-52
NC_003272.1\|WP_010994933.1\|877322_881312_-\|AAA-like-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	7.81058e-57
NC_003272.1\|WP_010994919.1\|868011_868893_-\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	2.63954e-150
NC_003272.1\|WP_010994936.1\|883816_884533_+\|bidirectional-hydrogenase-complex-protein-HoxU	gnl\|CDD\|181037	PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU; Validated.	4.613e-171
NC_003272.1\|WP_010994924.1\|871941_872484_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.7861e-37
NC_003272.1\|WP_010994925.1\|872574_873069_+\|bidirectional-hydrogenase-complex-protein-HoxE	gnl\|CDD\|236053	PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed.	8.0089e-111
NC_003272.1\|WP_010994923.1\|871422_871692_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.26382e-47
NC_003272.1\|WP_010994932.1\|876868_877210_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	3.88889e-09
NC_003272.1\|WP_010994918.1\|866399_867884_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.89134e-10
NC_003272.1\|WP_010994926.1\|873379_875014_+\|SLBB-domain-containing-protein	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NC_003272.1\|WP_010994929.1\|875993_876269_+\|BrnT-family-toxin	gnl\|CDD\|225481	COG2929, COG2929, Uncharacterized protein conserved in bacteria [Function unknown].	4.43188e-42
NC_003272.1\|WP_010994921.1\|869617_870676_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237376	PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase; Provisional.	0

>NC_003272.1|WP_010994926.1|873379_875014_+|SLBB-domain-containing-protein
MELTELLDIGRQERSQQKPVQIRCCTAAGCLSANSQAVQQQLEQAVKAEGLEGEVQVSGVGCMRLCCQGPLVEVEGSGEEKTKQRLYEKVTPEDASAIIGALKGKEAQLSVVNLEQPFFTYQAPIVLENSGKIDPERIQAYIAAQGYQGLYQVLREMTPAAVVDSVSRSGLRGRGGAGYPTGLKWATVAKAKGERKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGASQGYIYVRAEYPIAIKRLHTAIHQAQRLGLLGSNIFESPFDFKIDIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRKGADWFASIGTAKSKGTKVFALAGKIRNTGLIEVPMGTSLRQIVAEMGGGIPDGGVAKAVQTGGPSGGCIPASAFDTPVDYESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHGLLSKIREGKASLADLELLEELCDMVKNTSLCGLGQSAPNPVFSTLHYFRDEYLALIAVGAVSLNSTD
>NC_003272.1|WP_010994925.1|872574_873069_+|bidirectional-hydrogenase-complex-protein-HoxE
MTTTTPPHPHPSGDKRLKMLDAAIKRHQYQQDALIEILHKAQELFGYLENDLLLYIAHSLKLPPSRVYGVATFYHLFSLAPQGVHSCVVCTGTACYVKGSSAILADLEKATRIHAGETTADGQLSLLTARCLGACGIAPAVVFDGKVLGNQTPESVNERVQGWL
>NC_003272.1|WP_010994924.1|871941_872484_+|universal-stress-protein
MLKKILVALDRSDMGQQVFEQALVLAKATQAKLLLLHVLSPEEEGSPHIPMVSGYDYYPGLSGQSFEIYQKQWDSFKDEGVRMLQTLCAKANTQGVSTEFSQTLGNPGRTICKLATNWDADLIVMGHRGLSGVKEFFLGSVSNYVLHHTPCSVHIVHDLGRVKDTESAQDSTQQPQVIPA
>NC_003272.1|WP_010994923.1|871422_871692_-|30S-ribosomal-protein-S15
MALTQQRKQEIINNYQVHGTDTGSTDVQIAMLTERINRLSEHLQANKKDHSSRRGLLKLIGHRKRLLAYLQQESREKYQALIGRLGIRG
>NC_003272.1|WP_010994922.1|870939_871410_-|PAM68-family-protein
MPAEESERGRLPFEPKKKRQKPAKAPSKPQVQLKEADKQDKKQLPYTKEEMAIPQVVSQRMIRRVAAFCGIPTALGITTLVSSYLLTIYSDIQLAPIAVLLVNMGFFGLGVLGITYGVLSASWDEERTGSLLGLGEFGTNWGRMVEGWRETRQKKV
>NC_003272.1|WP_010994921.1|869617_870676_-|3-deoxy-7-phosphoheptulonate-synthase
MIVVMKVGSPEVEINRINDELTSWGLTPEKIIGKHKVVIGLVGETADLDPLQIQEVSPWIEQVLRVELPYKRASRQYRHGEASEVVVNTPDGSVVFGENQALVVVAGPCSVENEEMIIETAQRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAKARDVSGLGIITEVMDASELDIIAEVADVIQVGARNMQNFSLLKKVGAQPKPVLLKRGMAATIEDWLMAAEYVLAAGNPNVILCERGIRTFDRQYTRNTLDLSVVPVLRKLTHLPIMIDPSHGTGWAEYVPSMAMAAIAAGTDSLMIEVHPNPKKALSDGPQSLTPEHFDRLMQELAVIGKAVGRWPQPAVVTA
>NC_003272.1|WP_044520716.1|868980_869364_-|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MGFHYTNALITLATLNINQLMTFYTNFLEQQPITSIPNVYAEFHVAGMRLGIFKPKQTHESEFQNSTKSKVSLCLEVSNLEAAIAHITDLGYPPPGEIAIASHGREIYAYDPDGNRLILHQGITGNN
>NC_003272.1|WP_010994919.1|868011_868893_-|ribosome-biogenesis-GTPase-YlqF
MGLTDNYKLNLIQWYPGHIAKAEKNLKEQLSRVDVVFEVRDARIPLATHHPQIDEWVGNKARILVLNRLDMIPPQVRSLWIDYFQNRGEVPYCTNAQHGQGVVGVAKAAQAAGVELNQRRRDRGMLPRAVRAVVIGFPNVGKSALINRLLGKRVVESAARPGVTRQLRWVRISDQLELLDAPGVIPVKLGNQEAAVKLAICDDIGQASYDNQLVAAALIDLVNSLQEQAGELLPKSPLYTRYELDPTPHTGEGYLHALAEYRHKGDVERTARQLLTDYRKGLLGTLPLELPPM
>NC_003272.1|WP_010994918.1|866399_867884_+|VanZ-family-protein
MVRSQQNPQKHNWLFFFISVFIVLIATLYPFDFSKIVKFSITELIASFNNSSSFQDQVNNILLFLPVGWSFGNLCQKSIRKITLQILFVILVSFGLSLTVEFLQIFLPSRSPTPADLLNNSLGGLFGFICFSIWNAKSFSSTVEKLDSSRVSKSSKLIICFFCGYLILTLLISLLWQGTTNLSNWDRNYYLSVGNEITGNKAWAGYVSEISIVDRAISKNEASQTLADANYLHKLGNSLVAHYKLNGECCYQDQTGNQPELLWQGRSASTPKSQGAFLDAHHWLKTSTPVSHLSQRMSQTSEFTISTAIATTNVDQKGPARIISVSGSSQRRNWTLGQQGNSLDFRLRTPLTGENGTELKLNIPNVFTDTYLHHLVITYSRGNIQVYIDKLENFHSFNLLDLIPKEQRIFYYALTFMPLGIGLGIITFLARKKLIFYRILFYSGILIPSLMLEGILVSESGKDFSIKHLLLGISFTAVTMIFLRIRAARLKMIS
>NC_003272.1|WP_010994917.1|864310_865951_-|FHA-domain-containing-protein
MTELTLRLQQGDTETTVTVNRDVFTIGRLPECNLYLPFAGVSRKHAQLVKKADGKWIIEDLGSKNGTQVNQSIVSHPRQLQHGDVIWLGNVNLVVLLQTPLTVVSIKPVQPSDVGEQRTIFRSAKQLQQQWIEANSDDGDISNKNKTIARLKDLVDIAKNLCAAASIEEIFFQVQQVVFRYLGSIDRLALLIDVNGCGHLELVNAGTRSKTQQQYLLADASWISRSICQKVFEEKIVIQTADTHKDERFSSEHSILLKGIRSAMAVPLWDENKVVGVLYADAHLSSYHWERDGEEELSFFSALANLVASSVQRWLLAEKLKTEEVIRHRLERYHSPAVVQQLISIGGLPDGRLPPAESEISILFADLVGFTAISERLTPTAIAQLLNNLFEEMLQEVFACGGTLDKYIGDCIMAFFGAPEPQADHADRATAAAKAMLIRMEHLNANGFWQEPLQLRIAINSGKAVVGDVGSSQRVEYTALGGTINLAARMEAICPPSECVISEATYELLSQRYDFQKMGDYRFKGIDRLVKVYQTKLQQVTTIINH
>NC_003272.1|WP_010994927.1|875160_875556_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MILLDTHIWLWWLHSPEQLSESGRTLLTIGENQNALIVSAISVWEIAIKHSNGKLPLPLPINEWFALAKTRPGITIEPLDPLDAITSTQLPGDFHKDPADRIIVAIAYRRNIELMTCDQKVLNYPHIKTIC
>NC_003272.1|WP_044520718.1|875552_875819_-|hypothetical-protein
MSNQELEQQLLSLDLAERIRIFQILAQSLTVQSSPPSPTPDAIDLKSDSEALLLSADRSPQHPLRKIPLTIPPDFDEPMPELWDALGQ
>NC_003272.1|WP_010994929.1|875993_876269_+|BrnT-family-toxin
MGFEWDDNKAESNFLKHGIKFEEAVTVFADPYLMFTEDSIHSQGEEREWAIGEAEDGSIVVVVFTMRGERIRIISARKATKRECQQYESGI
>NC_003272.1|WP_010994930.1|876252_876519_+|BrnA-antitoxin-family-protein
MNQESEFPFDKARRVTPEENQKFRDAIADQFGVTLRKRGRPAKDEEEKYEPISIRFHPKIIAWAKEEAEKRGIGYQTVINEALLEKIG
>NC_003272.1|WP_010994931.1|876672_876882_+|hypothetical-protein
MQTDNIPQQRLIGKIRQLVPEQVVLVERFIDSLSQKNEEYNLTLAATKLSEPVLQRIWDNPDDAEYDKL
>NC_003272.1|WP_010994932.1|876868_877210_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MTNYKFGDVILVPFPFTDQTTTKKRPSVVVSSTDYQRQRSDLILIAVTSTTNPVTSFAEMTITEWKAAGLLKPSIIKPVLTTIDKMLVIKKLGELQEVDTQALHNLLQIILGG
>NC_003272.1|WP_010994933.1|877322_881312_-|AAA-like-domain-containing-protein
MVDNYEYQVGASLPPDAPSYVVRKADSDFYQALKAGKYCYVFNSRQMGKSSLKVRVMQRLVNEGVACSSIDVSGQGSKDNVTQEQWYTGIVSKIVKDLQIAKPIEFRRTWWRDRHDISPVQRFDEFIEDVLLSSIQRHIIIFVDEIDSTLSLGFASEDFFALIRSCYNKRAENPAYKRLTFALLGVATPGDLIQDKTRTPFNIGEAIELDGFKIHDIEPLAKGLAGKVENPQAVMQEVLAWTGGQPFLTQRVCELLGKALSIEKRDFRSVDENQIIELVKEIIHNQIIDNWEANDKQEHLKTIRDRLLISEEISVALLGLYQQILQQVEMTADSSFEQMRLRLTGLVVQQQGKLRVYNQIYRNVFDLSWVENELGKLRFYADKLRAWVESNYQDNTCLLWGEDLEKARVWADGRKLSDVDYRFLSASVEAELNQKVVKAETRQNQALQEEEKAKQRLTEVERKINIGGGILALFVVGAIVAAIGAISANIERQQAQVVTDLERSSADLLRLRGNVGLDNLVEAMRSVKQLKQLVKNGNQLKDYPTVSPILALHNTLEYNREINQLKDDRRVQKQVFSPDTKIVANISDDGTTKLLNLQTGTITTLKHDKKVNNVAFSPNGQIVATASDDGTAKLWNLQGGKIATFKHNKEVNDVAFSPDGKTVGTASWDTAKLWNLQGGEIATLQYDSLVQNIVFSPDGKNVAIASYDSDVKLWNLQGKEIATIIHNKMTKYLSVVNNLFFSPDGKVVATTSRRDATTKLWNLQGKEIATFKYYPDIGIKNSVFSPNGKVVAIYSDDKTVNLYNLQGNTIATLKHNDKVEDIVFSPDGNTVATVSSYVHDGTVNLWNLKGNIIGTFKHQGLFQDISRLEFSPDGQTIATALLDNTAHLWNLQGKKIAIFTHYSQVLNLAFSPDGRTITTASSDGTAKLWNLQGGNIRILKHNDQINNIVFSPDGKTVATTSYDGTAKLWNLQKGEIVTLKHDGVVNDAVFSPDGKTIATTTSSDKTVKLWNLQGQLIATLKHKYEPDKEVVFSPDSNIIATSDDTAKLWNLQGQLIATLTNEGGVREVIFNPDGKSVLTTSYENAKLWNLEGQEIATFKHKHLGEVVFSPDGHTVATASVYRDSDISGSVKLWNLKGEEIITLQHGSFSDVLFSPDGKTIATVSTLSNTAKLWNLQGREIATLTHDGWINHISFSPDGKTIGIRSGDKTVKLWNLRGQEIATLKHNSSTIVSDPIFSPDGKTIATVSLDRTVRLWTEVRDGSWQQFAEYQSRRVVFSPDNKLIAIEGNYFVQLRRVQSLDSLLARGCNDLKEYLASRPDLRKEICPDNK
>NC_003272.1|WP_010994934.1|881706_883038_+|AAA-like-domain-containing-protein
MTVNPEPIRVLGFRVRQDYINKVKAAMKTAMMKMGKKNQETFAYAIQIAPSTLSSFLNGKNVALGTFQQICQSLDLNWEDIADRADNSITLPVLQSSATSSPILSPDMSIKYPEGPVALDSPFYIERPPTEQDCYREISKHGALIRIKSAEQTGKTSLLIRILHQAQTKGDRTVYISLKEADNQCFINLDKFLRWFCATVSRKLKLENRLDEYWEDDISCNMRCETYFEEYILPEIGQPLTLGLDEVDRLFAYPDIYGDFFGLLRYLHEEARRENIWQKFRLVLAHSTEIYVPLDINRSPFNAGFPVDLPEFNSQQITELAEKHQLNWGEKEVTQLTSMIGGHPFLVRLALYHIARQDVSLDKFLQTAATDSGIYSKQLYRLMSALEQQPELLAAMREVAKANHPVQLSAEIKFKLQAMGLVKITNDGVIPSCELYRQYFQNF
>NC_003272.1|WP_044520719.1|883178_883646_+|hypothetical-protein
MLQAFSNKQIKNLTASAVFAVLSLTSTVVRANDGPYIDQVKNQLFRAAFASGLNGYTLTHEPTIDTLREGRSHYINVNLRAGISYGIVGVCDSDCQDLDISLYDHRGNLIASDLQDDDIPMISFNPSRSGRYQIQVDMANCNANTCYYGVGVFGQ
>NC_003272.1|WP_010994936.1|883816_884533_+|bidirectional-hydrogenase-complex-protein-HoxU
MSVKTLTINDQLISAQEEETLLQAAQEAGIHIPTLCHLEGVGDVGACRLCLVEITGSNKLLPACVTKVAEGMEVRTNSDRLQKYRRTIVEMLFAEGNHICSVCVANNNCELQDLAIEMGMDHVRLEYHFPNRKVDISHDRFGVDHNRCVLCTRCIRVCDEIEGAHTWDMAGRGTNSHVITDLSQPWGTSDTCTSCGKCVNACPTGAIFYQGSSVGEMKRDRAKLDFLVTAREKQQWNL

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Crispr_ID: NC_003272_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_6

1342079-1342206

Orphan

Consensus_repeat	Method
TTAATTCGTGCTGACCTCAGTCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_003272_6

>merge|NC_003272|6|1342079-1342206|CRISPRCasFinder
CTAAGTGGTGCTAACCTCACTAATGCTATTTTCAATCATTCCAGCCTCAATGTTGCTAATTTAATTCGTGCTGACCTCAGTCGCGCTCAATTGCGTGGGGCTTCTTTGGTACGTGCTGAGTTAATTCG

>NC_003272|6|5|1342079-1342206|CRISPRCasFinder
CTAAGTGGTGCTAACCTCACTAA	TGCTATTTTCAATCATTCCAGCCTCAATGTTGCTAAT
TTAATTCGTGCTGACCTCAGTCG	CGCTCAATTGCGTGGGGCTTCT
TTGGTACGTGCTGAGTTAATTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995314.1\|1340975_1341821_-\|prephenate/arogenate-dehydrogenase	unknown	unknown	gnl\|CDD\|180970
NC_003272.1\|WP_010995318.1\|1345294_1347220_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226654
NC_003272.1\|WP_010995317.1\|1344345_1345218_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367959
NC_003272.1\|WP_010995310.1\|1336736_1337060_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995322.1\|1355018_1355507_-\|DUF1772-domain-containing-protein	unknown	unknown	gnl\|CDD\|227787
NC_003272.1\|WP_010995307.1\|1334632_1334815_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NC_003272.1\|WP_010995316.1\|1343544_1344126_+\|DUF1517-domain-containing-protein	unknown	unknown	gnl\|CDD\|369378
NC_003272.1\|WP_010995319.1\|1347726_1350270_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366045
NC_003272.1\|WP_044522791.1\|1337490_1338597_+\|saccharopine-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|224662
NC_003272.1\|WP_044520826.1\|1355579_1355996_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|376462
NC_003272.1\|WP_044520823.1\|1335258_1335699_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995321.1\|1353845_1354940_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995320.1\|1350320_1353707_+\|virulence-factor-SrfB	unknown	unknown	gnl\|CDD\|212667
NC_003272.1\|WP_010995313.1\|1339556_1340498_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_003272.1\|WP_010995324.1\|1356142_1356865_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|376516
NC_003272.1\|WP_010995305.1\|1331524_1333522_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_003272.1\|WP_010995306.1\|1333866_1334349_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995325.1\|1356961_1357843_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NC_003272.1\|WP_010995309.1\|1335733_1336255_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_044520824.1\|1338894_1339479_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995314.1\|1340975_1341821_-\|prephenate/arogenate-dehydrogenase	gnl\|CDD\|180970	PRK07417, PRK07417, prephenate/arogenate dehydrogenase.	0
NC_003272.1\|WP_010995317.1\|1344345_1345218_+\|hypothetical-protein	gnl\|CDD\|367959	pfam04484, QWRF, QWRF family. AUG8 belongs to the plant QWRF motif-containing protein family, which also includes microtubule-associated protein ENDOSPERM DEFECTIVE 1 and SNOWY COTYLEDON 3. AUG8 binds the microtubule plus-end and participates in the reorientation of microtubules in hypocotyls (the stem of a germinating seedling).	0.00800982
NC_003272.1\|WP_010995322.1\|1355018_1355507_-\|DUF1772-domain-containing-protein	gnl\|CDD\|227787	COG5500, COG5500, Predicted integral membrane protein [Function unknown].	3.7939e-79
NC_003272.1\|WP_010995307.1\|1334632_1334815_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	1.58287e-07
NC_003272.1\|WP_010995316.1\|1343544_1344126_+\|DUF1517-domain-containing-protein	gnl\|CDD\|369378	pfam07466, DUF1517, Protein of unknown function (DUF1517). This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.	2.96867e-31
NC_003272.1\|WP_010995319.1\|1347726_1350270_+\|hypothetical-protein	gnl\|CDD\|366045	pfam00350, Dynamin_N, Dynamin family.	3.77869e-06
NC_003272.1\|WP_044522791.1\|1337490_1338597_+\|saccharopine-dehydrogenase-family-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	7.95864e-106
NC_003272.1\|WP_044520826.1\|1355579_1355996_-\|MAPEG-family-protein	gnl\|CDD\|376462	pfam01124, MAPEG, MAPEG family. This family is has been called MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism). It includes proteins such as Prostaglandin E synthase. This enzyme catalyzes the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.	2.16295e-12
NC_003272.1\|WP_010995320.1\|1350320_1353707_+\|virulence-factor-SrfB	gnl\|CDD\|212667	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family. HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.	4.6866e-09
NC_003272.1\|WP_010995313.1\|1339556_1340498_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	5.70143e-47
NC_003272.1\|WP_010995324.1\|1356142_1356865_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|376516	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561. This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in pfam03188.	3.8848e-10
NC_003272.1\|WP_010995305.1\|1331524_1333522_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_003272.1\|WP_010995318.1\|1345294_1347220_-\|PAS-domain-S-box-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.09445e-44
NC_003272.1\|WP_010995325.1\|1356961_1357843_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	5.7104e-82

>NC_003272.1|WP_010995314.1|1340975_1341821_-|prephenate/arogenate-dehydrogenase
MQIGILGLGLIGGSLGYDLRSQGHHVLGVSRKRSTCETAVSLGSVDEASVDISLLTAAEVVFICTPIGLIVPQVEQLINHLPQATVVTDVGSVKAPIVEAISPQWENFVGGHPMAGTTDSGIESAQRNLFANRPYVLTPEPTTPKGAIALVEEIVRSLGAKIYYCQPEQHDRAVSWISHLPVMVSSSLIAACISETDSEVLQLAKNLASSGFRDTSRVGGGNPELGVMMAQYNRQALQGALEQYRRNLDELIALVKQENWSALKTKLQTTQQARPNFVDEI
>NC_003272.1|WP_010995313.1|1339556_1340498_-|N-acetylmuramoyl-L-alanine-amidase
MRYGIDIGHNCPPDTGARGIRFEDNLTLDVGNRVISKLRALGHEVIPCKPDRATSVKDSLSQRCNRANANKVEVFVSIHFNAFNGQANGTEVFAASDNGRRIAKPVLDEIIKLGYFNRGVKSGSHLFVLRNTNMPAILVECCFIDAQKDMNLFDPEATANAIVKGLTGKLPSTPVPSVPDEEQNIDTSILRLQKSLNRLKITGRSNKSLVENSQLNTETKFAIERFQGIVGLEKTGIVNEATWNAINLILAKRIIRQNHAGGPVVRYLQFRVGVEVDGIYGAQTEAAIKRFQRQNGLLADGIIGPMSWQRLIG
>NC_003272.1|WP_044520824.1|1338894_1339479_+|hypothetical-protein
MQYPLELTFKFWALAPQISVADAQGNLVFYVKQKLFKLKEAITIFADVERTRPLYYIKADRIIDFSARYDFTDSNGANIGAVKRRGLKSLWRARYDIFDGDITTLNIQEKNPWVKIADALFAEIPIVGMFTGYVFNPVYLVSRTDGTVVMRLEKIPSFLSRKFTIKPVDQVSDREEQQVLLSLMMMLLLERNRG
>NC_003272.1|WP_044522791.1|1337490_1338597_+|saccharopine-dehydrogenase-family-protein
MTDRVLILGGRGRIGSSVAQDIATHTQAQITITGRSPASEKDITLPSGGRMQFLVLDLAEVDKLREAIAQSDLVIHCAGPFHYRDANVLKICIEQRVNYLDISDHRSFTSKALKYHEEAVAAGVTAIVNTGIFPGISNSMVRHDVEQFDDPEKIHLSYLVSGSGGAGITVMRTTFLGLQYPFEAWLEGKWQIVQPYSEREVVKFPPPYNNSGVYWFDMPETFTLPEAFPSVKTVITKFGSVPDFYNHLTWIAAHIFPKWLMQRRSMIEFLSHVSHFMTDVTNNFSGIGVSVRSEVTGIKNGKQAVYCSTLVHENTAVASGCGTGSMAQFLLAGKLEKPGVWPVEEALSTDLFLEAMANRGMNLNHNWL
>NC_003272.1|WP_010995310.1|1336736_1337060_+|hypothetical-protein
MRLSELDPLIPLIHLKEELLKLPKGYSFYEEEVVDFLSRRRWPESDRRIDRTTFWRWRNDNGIEHQKVFTRSDVLKLCQICDHYRVDGTRTEYLEIMKKKKELALSK
>NC_003272.1|WP_010995309.1|1335733_1336255_+|hypothetical-protein
MTSSEEYRRQVLRDLGEGNVESLDSPTGDPATEYETFDDFAQRTTTDQRRQLFGRSFQPNQIPSNQMEPELQKAIAQIKPNERDDVARAFFKHFKQRGLDDRHLEQQLGLSTHHASRMNADDVSKLASFAYHNHPDIFREVLAEQPGIMKFLSNPVVAGLIGIAAAKWLGSRK
>NC_003272.1|WP_044520823.1|1335258_1335699_+|hypothetical-protein
MIWVQQSRKILTTVVLVLVLMLTTACGGGNVAQLDRTSTPSAIGSGTAYSQLERGNSPSGQTFGNWVVQTSQGLVQDAYVRDNNKLGVVISRQVRPNEVRPLVKSLAQGFRKNFPNQDLTVLVYGPDKKLILTAKYDVQTNQIQYT
>NC_003272.1|WP_010995307.1|1334632_1334815_+|CsbD-family-protein
MSLEDRAKATGKNIEGKAQEALGNVTGDPEDKAEGKAKQAESEVRHGVEDVKDNVKKKID
>NC_003272.1|WP_010995306.1|1333866_1334349_+|hypothetical-protein
MTISSTGKTVSPRQKRAKLKGETTVEVENNQGQSLNKEQVEPNAELSVEASEQEQIHGKLAVAGAHSITGSNWEIAGTVSIAGLRPISTSTLEVVETIDIMGLRPITAHTFNIVDSINLSGIRPIASSALVLSSTYSSMGDRPVASNTIDDSDSLMGFID
>NC_003272.1|WP_010995305.1|1331524_1333522_-|excinuclease-ABC-subunit-UvrB
MTEFGLQAPFSPTGDQPSAIAQLVASIEGGNRYQTLLGATGTGKTFSIAAVIEKIGRPTLVLAHNKTLAAQLCNELREFFPNNAVEYFVSYYDYYQPEAYIPVTDTYIEKTAAINDEIDMLRHSATRSLFERRDVIVVASISCIYGLGIPAEYLKAAIPLQIGMEVNQREILRDLASVQYSRNDVEMGRGRFRVRGDVLEIGPAYEDRIIRVEFFGDEIDAIRYIDPVTGEIINSLQAVNIYPARHFVTPEERLEVACEDIAYELKQRKAELEETGKLVEAQRIDQRTRYDLEMLREVGYCNGVENYSRHLAGRQAGEPPESLIDYFPKDWLLVIDESHVTVPQIRGMYNGDQARKKVLIEHGFRLPSAADNRPLKAEEFWQKVNQCIFVSATPGNWELEISENRIVEQVIRPTGVIDPEISVRPTEGQIDDLLGEIKDRIDLHERVLITTLTKRMAEDLTEYLQEHGVKVRYLHSEINSIQRIEILQDLRQGSFDVLVGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAARHIRGQAILYADNMTDSMIKAIEETDRRRGIQVAYNKLHGITPQPIVKKSSNAILSFLEVSRRLNATDLKVVEEHIDELPLEEIPNLIDKLEAQMKEASKKLEFEEAAKLRDRIKQLRDKLVGR
>NC_003272.1|WP_010995316.1|1343544_1344126_+|DUF1517-domain-containing-protein
MFNKMMGRTRYVVFRLFLHLSGSDIAPILGELNRIARDAINAEGELEVLGEGLVELSETLLRYDEYWLSAANEGDVFWNEGEAGDYVNELFSDSAARYGADLELDTDDFDRPLSLPATRNIVIMTTVAYEGEVPELETDLANIQALQEALKALINLHYKHKLRAIQVHFSPARLGDELSNDQLLQYYPELIPL
>NC_003272.1|WP_010995317.1|1344345_1345218_+|hypothetical-protein
MIMTILRKVTVIFLAVSLCLTTVACGGGEQTNSTNRNVSQTSATTKLNDGQYQVQQATYDDASGEYTLFLLNSTPPTFATENLQMARLTDDEIKEGKKSYLKVDNGQPVLYLTEDFKIEYVHNVTENKTNPQTGQQETVVVRRENGFWAPFAGSVAGSIAGQAIGNALFRPQYYVPPVYQPGGVIRGFGGYGNSYDQAVSSYRSRYNAPPAAVRNRTAFRTTGTIRRSPSSTVRTAPRTTTNRPSGSGFGGSTLRPSGKSSTTRRSPSGSSFGSGRSPARRSTGFGSRRR
>NC_003272.1|WP_010995318.1|1345294_1347220_-|PAS-domain-S-box-protein
MRQSNNQVTKPPFHQIKAPLQIGESGKKYFNFTVTLETENNLYQVIKNSHKIIFVFTSDGYVCYTSPNVTEILGHEIRELEGKSFFSFVHNDDVQLFTDYLSTVSNCNNKHQPLEYRIKDKDGSWRWQEISTSAFKDENTNILYCVGITDDITDRKLTEAALAERIQLANFRTAIDTVFSQDHTLQELMRGCAETMVTHLNAAFARIWTLNKQNNVLELQVSSGMYTHIDGPHRFVPVGKFKIGLIAEEAKPHLTNSVQTDPRVGNKEWAKQEGMIAFAGYPLIVEGEILGVIAMFSRQVLSKSTFEALRITAHEVALGIKRKQTEEELRKSEAKYREIAQTAQEKAQKLEAALWELQQTQAQLIQTEKMSSLGQLVAGVAHEINNPVNFIYGNITHTREYIEDLLYLVKLYQNHYDSVLPDIADHIYGMDLEFISQDLPKVLNSMHMGAERIRQIVLSLRNFSRLDEDGMKAVDIHEGIDNTLLLLQNRLKAKPGCNEIQVIKEYGNLPNIVCHAGQLNQVFMNLLTNAIDALEESVASSHLSVVNHQTTNNPRILIRTELTTDNQVIIRIADNGMGMAEKVLNRLFDPFFTTKPIGKGTGMGLSISYQIVVTNHQGQLQCISAPGKGAEFIITIPTGDG
>NC_003272.1|WP_010995319.1|1347726_1350270_+|hypothetical-protein
MEPEKLGRFKEYGELILQKLDFVPQSPSQQEDWVPASLDDCLLRLREAAQKTVELATSPVKIGVMGEFSSGKTLLLGSLIGYADALPISENPTTGNVTAIHLIPHPGFTTTQVGNFTVEYLTREGVNECLRFMLGEANRRTIAAGLPAMQPAKLNSGKEILSWCEASWKSSNNLELRYLLRELVLFIRAYGSYGEALCGGRYEIDPDSAREGLQLAEQPLAIQTLGFEDLPPAHIRLPSPPQKLATKLLQNSFPLIRRVDIDVKISREIWDITDASEFTLLDFPGLGAANSGARDTFLSLRELAEVQTILVLLNGKSPGSDRANKIFTMMQQQRPGQDLKDLILVGVGRFDQLPLESEGGERLLDQLIDESRTPHLTADKVLQQLRVLQTTIDGASAFTTNKDRIALLSPLLGLAELAKRSSTIKAGSPEFLANLDYPNYLERSKQLQQKWGYLSDRLIESDPRSHLSRKLGYFAQDGGIAKLRELMQNHVATHGLKQLYEDTSRAADNLRQQQDNLKGIIAEIHEQGIPTGDSQALIDLRTALENLDKTYRNFQKDLGKEPLKDRRGTVVSDVVKDELTFRVLSWNHWTLLFNKANNGTITITESKGAAGKLFDRGNRTNTSIPTKSDDFYPAFEKTVKEVEEFARDRIRQAVVDLLSKLSQQIAPERERLQALLNPEIEQEIESKFGGEEADLFYQLLLGSDPIQWQAAIISEINHQEKFLTPDIIFPLARQDEKHDIGQIFDWSPEKAQTLSKSSNHQMFVLRLRDEITASASLHLVQYVSEVNQRVNAELDGILDQIIPTLQNISKKDGLLRFIAAGDTQSSGAVPVWLQNLSEIADLAVKYQ
>NC_003272.1|WP_010995320.1|1350320_1353707_+|virulence-factor-SrfB
MPVKIQLAPRFQMRVNEKKYLELPTIQLIGTGNNVPHISRITCTVKGASSELALKIEKSYRQFESATPKISQIGQLEQYPCKLEQTFTQAINCNLQVIVEYFDSDLSGNPLLSARKKIAAYCHLWSLPMKPTTQPDNTQEIRNHEKQPDIKQRKRFPGWFALDFGTSNSTVTLFDPIEVPIAEVLPREQELRLRDRLSQWLSSPAAIALPEASASEWDKFTLDISKNLEIDPSNLHEVFQTDNKERFLEAIRQIELCLGNSDRFRHAISRKLYNIYHEVFRVPTLESQNLIPVVLDIDRRDTEIPSELEISSLTDLNIRMGREARDNRKKAIAQGTSSSLKEIISRFHHSPKRYFGQKRDFSVILDGAEETINVNQLVQAAWSHLIDLTEDYRQRARRRFSDGEFLTAVVTYPTVAPPVVRKEVKELVEQLGIDDVQTAYDEAVSVAIFFLWREFGGNLNIGIESFKTRCRQEKNKWSQNVLVLDIGGGTTDLALIELTLEDKTPFFSSNEDRGLGGRYYKLTPKLLGSSGHLQLGGELITLRVYRLLKVAIADTLLTAISFGKIESDKLEDLISSELNERFLEKGKFKSGSLLKCLDKENPEGDAAYKDALDTAEKVIPTRWQQAPQRLQTFYTLWDHAEAAKLKLGQKAPDDVSPLTFTLSEQQIAELLTQSAIKFQVKELDTLHVTLDTQQFERAAASAIKEAIGIAKGLMESRLRSEDNNIDPWNTHKVDWLILSGKTCNLDLVQRHIYQEFSNSPHFVWNPERITFVLEYTKLATSAGACYAEKLRRLRFDPEESKGLLRKGANQLEIDVKNLFYYLPCNFKRKTQSNDLLTVFKAGQELYQLTPGENVAKVRTEWQGIQLTNIIYRQDYEDGDLRLWGSFDGKTLMEKLAMEEGEFLRKIKVQFEIDQTLQFNVLLCQGNPHYLIDVPGIDVNSAISAVSNASTLFADGNLKWNIAVERPDKDLNDGDIAVNVIESATVDQPDAYHLVFEVDKNPNKSLQTFHYLHDGSPHPGAGLISNPLPPFPQTGQHTFYVYQTDTQTNTKKWIRIGALRKPDVNTDYPCQYRVTLDNRGILRIHAGDVPYWTSTSAECLQQEGCVYCAELDLQPNEVDKERDPFCGIH
>NC_003272.1|WP_010995321.1|1353845_1354940_+|hypothetical-protein
MQHLYQLLATKNSELARLLRYGLYGLEASLKKAQAEFPQDPGAKVCDEVLQELRYLLQPEKQAVAIIQQPDEFKLNHLREAFDSDSELGLYLGDSLLQSHTDADLWNEIHRKLLRVPEDLAQIWRQRALDLAQEMGAMENNEYVYHLPFIRNEIIYPGLSGSVNVQGLCLSQKAFFQNNVIQNYASEELHLLASFLLLWCKFIEIEPDLHHALKSVFSFDFVPLHSQPDQQNQYIDALVDRFQRTKKAEEIAEPLLTLRAWIDMDEAINSLVFVPPSERYSWWGKLQQESRRALKKVADRATNAGYEVRIRQLTGIYADICAFSKDDLQLDCGGIPGEVLTCLRVYARINQEEIPGRVIFRSSR
>NC_003272.1|WP_010995322.1|1355018_1355507_-|DUF1772-domain-containing-protein
MATVDNLFSILELFAVLGCGLMAGVFFAFSTFVMNALARLQPTQGIAAMQSINITVINPLFMTAFLGTGVACIILLISSLLGWHQPNAVYLLVASLLYLVGTFGVTIVFNVPLNEALAIANPDSTDGVKLWTSYLTNWTFWNHIRTAAALAASALLTIGLRY
>NC_003272.1|WP_044520826.1|1355579_1355996_-|MAPEG-family-protein
MSSVMVTTDMTVPLWGLAIFVIWTIAVVVFLLAVRIRHLSTGGSPKDFGTPNEESLLWRLFRVQSNLVENLPLYIGVVFLLTVRGVSGTVVDSLVVVYILFRLVHSLIHIAGLNPVFRLSSLVIQLVCLVALITLAIF
>NC_003272.1|WP_010995324.1|1356142_1356865_-|cytochrome-b/b6-domain-containing-protein
MSRSAPYQPLLLKILHGVSGILAIAAIITGFLVYNTFDGRFGKLPIPRVGESIDVHGTFAVFFFFVFPALALYSFHAGNRKLLQQDSLQNLTQFGRPIWWVSLQRIANTLMLIAAVLAVLSGRMMKEEWLPTGELNHAWYYLHLIGWVVMVACLAIHILMSIKVGGVPLLLSIFSWQVRPEDSPKKWSSRLQNWLSDLSANFGGGINNFMQNNFPLRVIEIIVLVGIFAALVLPLFFSGE
>NC_003272.1|WP_010995325.1|1356961_1357843_+|DNA-adenine-methylase
MLKSPLRYPGGKSKAIKQIIEYLPESFHEYREPFVGGGSVFIYLKQKFPDLKIWINDLNTELFLFWKIAQSDLSQLVKEIRRIKDKYQDGKLLFLELTTVDVISLSDLDRAVRFFVLNRITFSGTVESGGFSQQAFQKRFTHSSIERLEKLENILTEDIKITNLDYSQLLNNEQNDVFIFLDPPYYSATKSRLYGKDGELHTSFEHQRFAALLQQCPQRWLITYDNSPEIRANFSSAHIYEWELQYGMNNYKQSGAAKGKELFISNYEIKHNLSKMATNQPDLQLELNISTSL

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Crispr_ID: NC_003272_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_7

1727817-1728071

TypeIII

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	PILER-CR
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	CRISPRCasFinder
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	CRT

3 spacers

cas1,csx21,csm3gr7,csx19,csm2gr11,csx10gr5

The CRISPR arrays of NC_003272_7

>merge|NC_003272|7|1727817-1728071|PILER-CR,CRISPRCasFinder,CRT
GTTTTCATCCCCGTGAGGGGTAAAGGAATTAAAACCAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAGGTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAACAGTTACACCAGTTGGATCTGGACTTGGTATTGGGACATGTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAACAGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAGGTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC

>NC_003272|7|4|1727817-1728071|PILER-CR
GTTTTCATCCCCGTGAGGGGTAAAGGAATTAAAAC	CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC

>NC_003272|7|6|1727817-1728071|CRISPRCasFinder
GTTTTCATCCCCGTGAGGGGTAAAGGAATTAAAAC	CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC

>NC_003272|7|3|1727817-1728071|CRT
GTTTTCATCCCCGTGAGGGGTAAAGGAATTAAAAC	CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995627.1\|1714500_1715403_-\|Fe-S-cluster-assembly-protein-NifU	unknown	unknown	gnl\|CDD\|273921
NC_003272.1\|WP_010995630.1\|1718607_1719189_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_003272.1\|WP_010995633.1\|1721071_1722886_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_003272.1\|WP_010995638.1\|1729648_1731655_+\|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|272998
NC_003272.1\|WP_010995643.1\|1736144_1736672_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	unknown
NC_003272.1\|WP_010995647.1\|1739071_1740376_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|131722
NC_003272.1\|WP_010995626.1\|1713395_1714283_-\|nitrogenase-iron-protein	unknown	unknown	gnl\|CDD\|237312
NC_003272.1\|WP_010995629.1\|1716846_1718391_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|224872
NC_003272.1\|WP_010995628.1\|1715534_1716737_-\|cysteine-desulfurase-NifS	unknown	unknown	gnl\|CDD\|132443
NC_003272.1\|WP_010995644.1\|1736659_1737673_-\|CRISPR-associated-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_003272.1\|WP_010995634.1\|1723259_1724165_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995645.1\|1737677_1738604_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_003272.1\|WP_010995646.1\|1738619_1739075_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	unknown
NC_003272.1\|WP_010995640.1\|1733487_1734309_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995642.1\|1735087_1736143_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_003272.1\|WP_010995641.1\|1734361_1735078_-\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	gnl\|CDD\|177871
NC_003272.1\|WP_010995632.1\|1719763_1720099_+\|XisI-protein	unknown	unknown	gnl\|CDD\|370165
NC_003272.1\|WP_010995637.1\|1728407_1729151_-\|DUF4384-domain-containing-protein	unknown	unknown	gnl\|CDD\|379557
NC_003272.1\|WP_010995631.1\|1719362_1719776_+\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136
NC_003272.1\|WP_044520961.1\|1711820_1713263_-\|nitrogenase-molybdenum-iron-protein-alpha-chain	unknown	unknown	gnl\|CDD\|162284

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995627.1\|1714500_1715403_-\|Fe-S-cluster-assembly-protein-NifU	gnl\|CDD\|273921	TIGR02000, Nitrogen_fixation_protein_NifU, Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	5.37876e-173
NC_003272.1\|WP_010995630.1\|1718607_1719189_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.07713e-40
NC_003272.1\|WP_010995633.1\|1721071_1722886_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.11337e-05
NC_003272.1\|WP_010995631.1\|1719362_1719776_+\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	5.89905e-82
NC_003272.1\|WP_010995647.1\|1739071_1740376_-\|CRISPR-associated-RAMP-protein-Csx10	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	0
NC_003272.1\|WP_010995626.1\|1713395_1714283_-\|nitrogenase-iron-protein	gnl\|CDD\|237312	PRK13236, PRK13236, nitrogenase reductase; Reviewed.	0
NC_003272.1\|WP_010995629.1\|1716846_1718391_+\|recombinase-family-protein	gnl\|CDD\|224872	COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair].	1.77701e-29
NC_003272.1\|WP_010995628.1\|1715534_1716737_-\|cysteine-desulfurase-NifS	gnl\|CDD\|132443	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.	0
NC_003272.1\|WP_010995644.1\|1736659_1737673_-\|CRISPR-associated-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.02247e-62
NC_003272.1\|WP_044520961.1\|1711820_1713263_-\|nitrogenase-molybdenum-iron-protein-alpha-chain	gnl\|CDD\|162284	TIGR01282, Nitrogenase_molybdenum-iron_protein_alpha_chain, nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases. [Central intermediary metabolism, Nitrogen fixation].	0
NC_003272.1\|WP_010995645.1\|1737677_1738604_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.50853e-115
NC_003272.1\|WP_010995642.1\|1735087_1736143_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.59772e-14
NC_003272.1\|WP_010995641.1\|1734361_1735078_-\|hypothetical-protein	gnl\|CDD\|177871	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.	0.00151537
NC_003272.1\|WP_010995632.1\|1719763_1720099_+\|XisI-protein	gnl\|CDD\|370165	pfam08869, XisI, XisI protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	3.34568e-57
NC_003272.1\|WP_010995637.1\|1728407_1729151_-\|DUF4384-domain-containing-protein	gnl\|CDD\|379557	pfam14326, DUF4384, Domain of unknown function (DUF4384). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	4.09539e-20
NC_003272.1\|WP_010995638.1\|1729648_1731655_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|272998	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.	3.70283e-123

>NC_003272.1|WP_010995634.1|1723259_1724165_-|hypothetical-protein
MSIENIICIPPIPVDNIPSPWRETFQQLNQVPPPLPVCNFPDQTNEQMPDTAGKEIIYWVDIDKSGLKPRMSILPTLVEVCFSDGELPNYTLKLTLLDQPALQCHADMLDADWRIALYWIVKKQWDSDLIIPTSTELAQLYEPWAELLNQVLKLCTVCFDRKNYLSRHYLHAADWFLKIIQEAKQIDTEIMIENEAKGKDSTIKTKREIISQLRELNNSATLETSPHYYRLIKVALSMEKCDEFNKNYWKPFLSAGCKDIQGMERKTSQESFVVNHKIVYRAPGQGKGIYTLINLNHAKFR
>NC_003272.1|WP_010995633.1|1721071_1722886_-|site-specific-integrase
MPKSDALIITVSEGSRVSQPENAYELLKEFEKHLNQEHPNQSYSIFNQSETSVYRYTLPGWGSPHIQGKKITQAEKIAAQEFAKKISLKEFQNALKIQQKVFDDLKIPKSIQRNYRAILNRIIQFSQKYVVLQNESATQSQTSTAHHPLWRKGCNADIVKTTNKQWQPRFGLGCIPEDIVSDVLEKQLLDLEDFGIDILGIRATTVKLNTSRIKQILGAKPCRQCVASTAELNINTLIPFVPIRTGLRTLPIDSSLAQRLIQQEELKEQARQAAIKCQSDIKRLLRWYREERKVSPGMEQGVILVHIFVAKFLYRNETDKLQAEDYEDIPVIIMLRQLLREVIKRVDTATPAIDVDKKWLDWPEWLSLVETLRQEATVVVYVRPDREQPSGLRVLRGIGQSLQIFLLCSFWAFLPPDRQRTVRELEEGKSLVWKDDKWQIHLTSGATKIDNEEEWIPIPNVKFQDGTCLYQYFQAWLHDYKALPSYANLPWEGGLRAVFTPEHSFCFTMVDSGKPLTANAVRDYVKRRAYRLTKKAITPHLTRSMYITYLEENGVPENLMVSTAKSMHHSRATQRKHYDKRQQSKKMQPGLDLAVQLAQSILHK
>NC_003272.1|WP_010995632.1|1719763_1720099_+|XisI-protein
MAKLDEYRLKVQQILEKYAQYKPSYGDVEIELIFDTQRDHYQVISIGWNQQKRVYGPIMHLDIRNEKIWIQQNTTEVDIAAELIEMNVPKQDIVIGFHTPKMRQMTSFSVG
>NC_003272.1|WP_010995631.1|1719362_1719776_+|XisH-family-protein
MARDLFHNIVRTALEKDGWTITDDPLSIRCGGVDVQIDLGAERLIAAEKAGEKIAVEIKSFASASKISEFHTTLGQFINYRIVLRTEDPERILYLAVPLVTYNDFFSLPFTQTVVQETKILLLIYNIETEEIVQWLN
>NC_003272.1|WP_010995630.1|1718607_1719189_+|Uma2-family-endonuclease
MVAISQQPPKMTIEEYLAWEPLQDLRYEYVNGEVFAMTGGTIPHNDIALNFYRALYPHLRARGCRVNVSDVKVQVTPQSPYYYPDVIVSCDPQDINARRFIQNPKIIAEVLSPGTSGKDRGEKFTNYLKIPSLQEYLLIDSETISVERYCRGEGRMWLYYPYTEGDTITLSSIEFELAIALLYEGVILGTEAE
>NC_003272.1|WP_010995629.1|1716846_1718391_+|recombinase-family-protein
MENWGYARVSGEEQQTDKGALRKQIERLRNAGCSKVYWDIQSRTTEVREGLQQLINDLKTSSTGKVKSLQFTRIDRIGSSSRLFYSLLEVLRSKGIKLIALDQGVDPDSLGGELTIDMLLAAAKFEVRMVTERLKSERRHRVNQGKSHRVAPLGYRIDKDKYIRDRSPCVCLLEGRRELTVSDLAQYIFHTFFECGSVAATVRKLHSDFGIETKVLNWNKLEKSSRIVGDDDLDKIAFTPNKTNHPLRYPWSGLRWSIPGLKALLVNPVYAGGLPFDTYVKSKGKRKHFDEWKVKWGTHDDEAIITCEEHERIKQMIRDNRNNRWAAREENEVNPFSNLLKCTHCGGSMTRHAKRVDKSGQAIYYYQCRLYKAGNCSNKNMISSKILDIQVMDLLAQEAERLANLVETDEPLIVEEPPEVKTLRASLNSLETLPASSAIEQIKNDLKEQIAIALGATNNASKQSLIAKERIIQAFAHKSYWQGLNAQDKRAILNGCVKKISVDGNFVTAIEYRY
>NC_003272.1|WP_010995628.1|1715534_1716737_-|cysteine-desulfurase-NifS
MSVIYLDNNATTKVDPDVVEAIMPYLTDYYGNPSSMHTFGGQLGKAVRTAREQVAALLGADESEIVFTSCGTEGDNAAIRAALLAQPEKRHIITTQVEHPAVLNVCKQLETQGYTVTYLSVNSHGQLDLDELEASLTGNTALVTIMYANNETGTVFPIEEIGKRVKERGAIFHVDAVQAVGKIPLNMKTSTIDMLTISGHKIHAPKGIGALYVRRGVRFRPLLIGGHQERGRRAGTENVPGIVGLGKAAELELIHIETAIKKETRLRDRLEQTLLAKIPDCEVNGDITQRLPNTTNIGFKYIEGEAILLSLNKYGICASSGSACTSGSLEPSHVLRAMGLPYTTLHGSIRFSLCRYTTEAQIDRVIEVMPEIVERLRALSPFKNDEAGWLQAQEQTLAHR
>NC_003272.1|WP_010995627.1|1714500_1715403_-|Fe-S-cluster-assembly-protein-NifU
MWDYTDKVLELFYDPKNQGVIEENGEPGVKVATGEVGSIACGDALRLHIKVEVESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNYRGIPLAAHDEDDEGALVCTCFGVSENKVRRIVIENDLTDAEQVTNYIKAGGGCGSCLAKIDDIIKDVKENKAATNLNNKGGSKPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV
>NC_003272.1|WP_010995626.1|1713395_1714283_-|nitrogenase-iron-protein
MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRIMIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLTGFRGVKCVESGGPEPGVGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMYAANNIARGILKYAHSGGVRLGGLICNSRKVDREDELIMNLAERLNTQMIHFVPRDNIVQHAELRRMTVNEYAPDSNQGQEYRALAKKIINNDKLTIPTPMEMDELEALLIEYGLLDDDTKHSEIIGKPAEATK
>NC_003272.1|WP_044520961.1|1711820_1713263_-|nitrogenase-molybdenum-iron-protein-alpha-chain
MTPPENKNLVDENKELIQEVLKAYPEKSRKKREKHLNVHEENKSDCGVKSNIKSVPGVMTARGCAYAGSKGVVWGPIKDMIHISHGPVGCGYWSWSGRRNYYVGVTGINSFGTMHFTSDFQERDIVFGGDKKLTKLIEELDVLFPLNRGVSIQSECPIGLIGDDIEAVAKKTSKQIGKPVVPLRCEGFRGVSQSLGHHIANDAIRDWIFPEYDKLKKENRLDFEPSPYDVALIGDYNIGGDAWASRMLLEEMGLRVVAQWSGDGTLNELIQGPAAKLVLIHCYRSMNYICRSLEEQYGMPWMEFNFFGPTKIAASLREIAAKFDSKIQENAEKVIAKYTPVMNAVLDKYRPRLEGNTVMLYVGGLRPRHVVPAFEDLGIKVVGTGYEFAHNDDYKRTTHYIDNATIIYDDVTAYEFEEFVKAKKPDLIASGIKEKYVFQKMGLPFRQMHSWDYSELGDGVQMSDEVRFFCEGRKKSLFLA
>NC_003272.1|WP_010995637.1|1728407_1729151_-|DUF4384-domain-containing-protein
MSRTLVASDEGMKLARKALKARNLTQTDFAIEVGLGYTTVNNFLNGKPIYRTNFQEICVFLDLDWKDIAAFGEAELEELTPLDKLWQQLQLLSSPTEQMGLVLVKEETLRWGHKIPSRYEKSVQVGSHIRFEVNLETPGYLILLQKDTSGQLWCFCPSCFAPQAHLNTGKTTLPQEGSPITSFPIEGNPGKEEIIAVFTNEVPELDWLPPGDNDPLELEASHLVALLEYVTGGGEYQIWYTDYMITA
>NC_003272.1|WP_010995638.1|1729648_1731655_+|CRISPR-associated-endonuclease-Cas1
MFTIEHLNFAWLQVRAGSKSAGVDGISVDLFESMATEQLQNIAYQLKEETYTANPAKGFYIPKKNGTKRLIGIHTVRDRIIQRLLLDELYFPLEDTFLDCSYAYRPGHSIQQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTYLEELSLEPSLLQLLEQQLKSGIIIAGQYRNFGKGVLQGGILSGALANLYLTSFDRKCLSQGINLVRYGDDFVIACNSWLEANRILDKITGWLGEVYLTLQPEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPEPVRPGEWVINDSGTPYFRLKPKPRKPVSHPPKACSIDKPINFPKASLSHYWQETMTTLYITDQGAYLSVKNQQFQVFHQGELRIKVPVMRVSNVVLFGCCNVSHGAVSMALRRRIPIMYLSQKGRYFGRLQTEGDAKVEYLMLQVERCQNHEFTRKQAEAIVRAKLHNSRALLLKLNRRHPSKIAATAISGIAELMEKLSLAESMDSLRGYEGKAATLYFQGLGSLFTGAFVFEKRTKRPPTDPVNSLLSLGYTLLSQNVFSFVQVIGLHTHFGNLHVPRDNHPALVSDLMEEFRAQLVDSLVAYLINSKIFTFEDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSEVTHPHTGYQVSLRRCLELQVREYITSLTGEVELYRPMIWKL
>NC_003272.1|WP_010995640.1|1733487_1734309_+|hypothetical-protein
MDWLPTIDLSHLWDLVIAQTPTPTTTPSPVVNPAKNINDIELLKSQLEFLKATNGQLGESFNRFVAAMQFTLVVFAFLGGFLAFAIGKNLDDAKKLASQLINREVENKITDLVQSEVESVKRSLQRERVIGSTVVDYYLPSDDTTEPDDCKLLRTRGFAKVRFCNQKRKPKKPLGDVLVLDLINSKLLEGQDFIGLSDKEAENKREEKVKIQIDAILPLMEKTTVLVIYVKGRFREIDNLAARVDYYYVPVNAPISLMGIVADSAYVAYGEKQ
>NC_003272.1|WP_010995641.1|1734361_1735078_-|hypothetical-protein
MANINYFITDEHLQIAHKIAKFLNNEQKRIEPGKEGISTELSKLITYLDAKIKQNSYVDKTLRKPSRFFTYIEQLVEHGKTIGHSKKTTTYYESINEVCNQYLKSYEKKPLVIIQILGWSQRLMRYYKTVDDDDDTDISPGISTEVVVRKIPKVIETPKIVKPQKTEDIKTLESPQSLKPTKPIPPKLIEPKKSEDSKNLQRPRIPDSPKPIKNSQPEAPKPVEPPKPWERVPKKPSK
>NC_003272.1|WP_010995642.1|1735087_1736143_-|CRISPR-associated-protein
MARNSSRSQNFGGSNQERGPRPYDFVYFPTTPPTQNQPPGHHKYLPNHLHGTLFLTLTVQTTLHISTGVVLLGEDINQADIPLIKTMVQGNDNELLIQGSSLKGCIRSVYEAITNSRVGVKPKQPNEYPEERLPAKEKNQLCPASIVFGASGEKWGWQGLITIQDAHCEITGSEVGFMPNLWRPRPDENQAYYNNDGKTVGWKFYYNMKNSIDKGLDNGIPVQVAFRNDEFSTQLNFKNLKPEELGALLIALGQDKNYPLVLKVGAGKPIGMGSMTVAITEAEIVQNQADLYNRYTSLSLPSSQLLTDESLQAFIQSKIQQAHESLIAQTQLQKLSEILNSSTNRIPYESY
>NC_003272.1|WP_010995643.1|1736144_1736672_-|hypothetical-protein
MCFVGVNQQPLSAEELIKLLQKFSTPPSYYFLRWAHRVGGFWRLGAEDSEYTSLEADVRDRLQQNLNETFPSPQGQLFNSILEIRWQQKQGKYEVLILSSQDKASILQTQDGENNFRLIKAGHWEIIEQNLLLHSPTETRFPKDLNSEDIKNIAQRYFRYKHTATVHFVALTIKK
>NC_003272.1|WP_010995644.1|1736659_1737673_-|CRISPR-associated-protein
MHKQFVNHCTIDLTIIPDGPILIKSGREGADPTKPQMEFVETFHNGKSIIYLPGSSLKGAIRAHAERIVRTVGHPEYEKPSNTELVWANNPLDTDKYDYLYENPQAEQGVKKKLSAPRIYKESSFTDQIFGNIAIASRFRIEDAYPDTSVPLKIEERNGVAIDRVFGSVAHGPFDYQVCTAGAFKTKIHLKNFSLAQLGLIALVLRDLNAGWFGIGFAKSRGLGIVRLEYNSAVVQYPGCILDNNNQIYSFGSSTPWDKIYLLGAGKFLRGDNANPYNFPTNDTEKQEVKNVVLTAMDFKFGVELRWDGENGVRDLFTKAVAAWSHLLQNGGAVCAS
>NC_003272.1|WP_010995645.1|1737677_1738604_-|CRISPR-associated-RAMP-protein
MFEIFKNRLEIIGILETVTALRISAGRSTEPIGSDLPVIKDAFGRPLIPGSSLKGALRSRLESFLRGIHHDFAANPAQETEWSIPPDEMASVKERIKNLTPQEKEAQLHEYIINNTDLVSSLFGSPWLASKFQIRDLTVSKPDDNWFGQYQERDGVAIDRDTETAGDGKLYDFQVVPAGTPFIFHAVIENAAEWELGMLMIGLHQFQTEQIPLGGGRSRGLGVVKLIIEDMKWVDVRDENYKRDKNYKPQTDPKKVQDYLKSLINNSSNSTSSDIDSQSLKQAWADAFINHLASELQKRTNTTATSSH
>NC_003272.1|WP_010995646.1|1738619_1739075_-|hypothetical-protein
MTDLTEQQQQREIQQKELKIQKEIRQIEDDLVIAIETILKDKDSCKNLEESQYRNLMHVADTTESIAVIKNFLRYQLGRDKKWGVGENSIAQRIINDIDTLLQEKAKTIVEEVKYMEKFKPVWLELTRRYLGYGSRRLKYINANKDNKYES
>NC_003272.1|WP_010995647.1|1739071_1740376_-|CRISPR-associated-RAMP-protein-Csx10
MKRIELTIKALSPLAIGKQKPGGSINEAERYIPGSVLRGAIAKHILQRAGRELENLATNGGDFADLFLAENPAIFQNAYPAVAKVGSKHQVVDNNIKVLPATAVSSKANPGFLPKGHGVFDTLIDSFCAEQFQHSYDPSSLKALEQGVDPRVETYNSLYSKHNEQYCTHAATSRLLTRVGINRYRATSSDDILYSIEVLNEAFIVANEGKNQEWDNYVYRGYINVSNDELATKLTNFINNNSEVFRLGGSVSRGLGKVEITAKEIPVADDISSRIHVFNQALHKRWQDWSEAFGDGLRPAKSDRTPNPTSKRTFFTLNLHSDVILTEDWQRTTVISPEMLQQFADVEDPSLKLHTAYSSYSYTSGWNSAWGLMKDVELVTNKGSVYLFSTENRQLWEDALSSLELRGVGDRTCEGFGQVEICNEFHQIFRENPV

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Crispr_ID: NC_003272_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_8

1732269-1733321

TypeIII

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC	PILER-CR
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	CRISPRCasFinder
GTTTTNATTCCTTTACCCCTCACGGGGATGGAAAC	CRT

14 spacers

cas1,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10

The CRISPR arrays of NC_003272_8

>merge|NC_003272|8|1732269-1733321|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAACTATCAGAAATTGTGTGTTTGGGTCTAACTTATTAAAAAGGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACACTGCTAAGAAAAGCTTGAATTTCTGCATCGATTATATGTGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACACGCTTCCTAGAAAATTTATTCCTGGAATTCTAGATATAGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACTCTTGTGCCTTAATGGCAACAACAAGCAAAGCGGAGAGTGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACGTTTTCACCGATTCCGACAAAACTTGTTCCACCAGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACTTTATTGTGCGCCTACACCTCCGATAGAAATTTCTGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACAAATAAAAGACAAGGAAATATATAAAGAAAATTATTATGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACACTATCATAATTTGTTGGGCTTGAAAGCGGACCAACTAGGTTTTAATTCCTTTACCCCTCACGGGGATGGAAACCTAATAAAAAACGGAACTGGTGGATAGAAAAAGTTTGTAAGTTTTGATTCCTTTACCCCTCACGGGGATGGAAACCAATAAAATGCAAGAAACGATAATGCGAGCAACAAAACGGTTTTGATTCCTTTACCCCTCACGGGGATGGAAACTTCGGCCTGGCGTTTGAGTCTTTCAATCTCTTCAGGTTTTGATTCCTTTACCCCTCACGGGGATGGAAACCTTCAAACTGGTTATCAATAGGAACGTAAACCAAAAGTTTTGATTCCTTTACCCCTCACGGGGATGGAAACTGGATTTAATTTTAATGTATCTCTAAGGTAACAAGCCCGGTTTTGATTCCTTTACCCCTCACGGGGATGGAAACCATTGGAATTTGCCAAATTAAATGCGGCTTTTTTTTGTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC

>NC_003272|8|5|1732269-1733321|PILER-CR
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TATCAGAAATTGTGTGTTTGGGTCTAACTTATTAAAAAG
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACTGCTAAGAAAAGCTTGAATTTCTGCATCGATTATATGT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACGCTTCCTAGAAAATTTATTCCTGGAATTCTAGATATA
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TCTTGTGCCTTAATGGCAACAACAAGCAAAGCGGAGAGT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	GTTTTCACCGATTCCGACAAAACTTGTTCCACCA
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TTTATTGTGCGCCTACACCTCCGATAGAAATTTCT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	AAATAAAAGACAAGGAAATATATAAAGAAAATTATTAT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACTATCATAATTTGTTGGGCTTGAAAGCGGACCAACTAG
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	CTAATAAAAAACGGAACTGGTGGATAGAAAAAGTTTGTAA
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CAATAAAATGCAAGAAACGATAATGCGAGCAACAAAACG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	TTCGGCCTGGCGTTTGAGTCTTTCAATCTCTTCAG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CTTCAAACTGGTTATCAATAGGAACGTAAACCAAAA
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	TGGATTTAATTTTAATGTATCTCTAAGGTAACAAGCCCG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CATTGGAATTTGCCAAATTAAATGCGGCTTTTTTTT
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC

>NC_003272|8|7|1732269-1733321|CRISPRCasFinder
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TATCAGAAATTGTGTGTTTGGGTCTAACTTATTAAAAAG
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACTGCTAAGAAAAGCTTGAATTTCTGCATCGATTATATGT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACGCTTCCTAGAAAATTTATTCCTGGAATTCTAGATATA
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TCTTGTGCCTTAATGGCAACAACAAGCAAAGCGGAGAGT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	GTTTTCACCGATTCCGACAAAACTTGTTCCACCA
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TTTATTGTGCGCCTACACCTCCGATAGAAATTTCT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	AAATAAAAGACAAGGAAATATATAAAGAAAATTATTAT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACTATCATAATTTGTTGGGCTTGAAAGCGGACCAACTAG
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	CTAATAAAAAACGGAACTGGTGGATAGAAAAAGTTTGTAA
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CAATAAAATGCAAGAAACGATAATGCGAGCAACAAAACG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	TTCGGCCTGGCGTTTGAGTCTTTCAATCTCTTCAG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CTTCAAACTGGTTATCAATAGGAACGTAAACCAAAA
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	TGGATTTAATTTTAATGTATCTCTAAGGTAACAAGCCCG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CATTGGAATTTGCCAAATTAAATGCGGCTTTTTTTT
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC

>NC_003272|8|4|1732269-1733321|CRT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TATCAGAAATTGTGTGTTTGGGTCTAACTTATTAAAAAG
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACTGCTAAGAAAAGCTTGAATTTCTGCATCGATTATATGT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACGCTTCCTAGAAAATTTATTCCTGGAATTCTAGATATA
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TCTTGTGCCTTAATGGCAACAACAAGCAAAGCGGAGAGT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	GTTTTCACCGATTCCGACAAAACTTGTTCCACCA
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	TTTATTGTGCGCCTACACCTCCGATAGAAATTTCT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	AAATAAAAGACAAGGAAATATATAAAGAAAATTATTAT
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	ACTATCATAATTTGTTGGGCTTGAAAGCGGACCAACTAG
GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC	CTAATAAAAAACGGAACTGGTGGATAGAAAAAGTTTGTAA
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CAATAAAATGCAAGAAACGATAATGCGAGCAACAAAACG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	TTCGGCCTGGCGTTTGAGTCTTTCAATCTCTTCAG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CTTCAAACTGGTTATCAATAGGAACGTAAACCAAAA
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	TGGATTTAATTTTAATGTATCTCTAAGGTAACAAGCCCG
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC	CATTGGAATTTGCCAAATTAAATGCGGCTTTTTTTT
GTTTTGATTCCTTTACCCCTCACGGGGATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995627.1\|1714500_1715403_-\|Fe-S-cluster-assembly-protein-NifU	unknown	unknown	gnl\|CDD\|273921
NC_003272.1\|WP_010995630.1\|1718607_1719189_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_003272.1\|WP_010995633.1\|1721071_1722886_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_003272.1\|WP_010995638.1\|1729648_1731655_+\|CRISPR-associated-endonuclease-Cas1	cas1	COG1518_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|272998
NC_003272.1\|WP_010995643.1\|1736144_1736672_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	unknown
NC_003272.1\|WP_010995647.1\|1739071_1740376_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|131722
NC_003272.1\|WP_010995629.1\|1716846_1718391_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|224872
NC_003272.1\|WP_010995648.1\|1740372_1741131_-\|CRISPR-associated-protein-Csm3	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_003272.1\|WP_010995628.1\|1715534_1716737_-\|cysteine-desulfurase-NifS	unknown	unknown	gnl\|CDD\|132443
NC_003272.1\|WP_010995644.1\|1736659_1737673_-\|CRISPR-associated-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_003272.1\|WP_010995634.1\|1723259_1724165_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995645.1\|1737677_1738604_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_003272.1\|WP_010995646.1\|1738619_1739075_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	unknown
NC_003272.1\|WP_010995642.1\|1735087_1736143_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_003272.1\|WP_010995641.1\|1734361_1735078_-\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	gnl\|CDD\|177871
NC_003272.1\|WP_010995632.1\|1719763_1720099_+\|XisI-protein	unknown	unknown	gnl\|CDD\|370165
NC_003272.1\|WP_010995637.1\|1728407_1729151_-\|DUF4384-domain-containing-protein	unknown	unknown	gnl\|CDD\|379557
NC_003272.1\|WP_010995631.1\|1719362_1719776_+\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136
NC_003272.1\|WP_010995649.1\|1741127_1743494_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|274208
NC_003272.1\|WP_010995640.1\|1733487_1734309_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995627.1\|1714500_1715403_-\|Fe-S-cluster-assembly-protein-NifU	gnl\|CDD\|273921	TIGR02000, Nitrogen_fixation_protein_NifU, Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	5.37876e-173
NC_003272.1\|WP_010995630.1\|1718607_1719189_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.07713e-40
NC_003272.1\|WP_010995633.1\|1721071_1722886_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.11337e-05
NC_003272.1\|WP_010995638.1\|1729648_1731655_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|272998	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.	3.70283e-123
NC_003272.1\|WP_010995647.1\|1739071_1740376_-\|CRISPR-associated-RAMP-protein-Csx10	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	0
NC_003272.1\|WP_010995629.1\|1716846_1718391_+\|recombinase-family-protein	gnl\|CDD\|224872	COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair].	1.77701e-29
NC_003272.1\|WP_010995648.1\|1740372_1741131_-\|CRISPR-associated-protein-Csm3	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.2972e-74
NC_003272.1\|WP_010995628.1\|1715534_1716737_-\|cysteine-desulfurase-NifS	gnl\|CDD\|132443	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.	0
NC_003272.1\|WP_010995644.1\|1736659_1737673_-\|CRISPR-associated-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.02247e-62
NC_003272.1\|WP_010995645.1\|1737677_1738604_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.50853e-115
NC_003272.1\|WP_010995642.1\|1735087_1736143_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.59772e-14
NC_003272.1\|WP_010995632.1\|1719763_1720099_+\|XisI-protein	gnl\|CDD\|370165	pfam08869, XisI, XisI protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	3.34568e-57
NC_003272.1\|WP_010995641.1\|1734361_1735078_-\|hypothetical-protein	gnl\|CDD\|177871	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.	0.00151537
NC_003272.1\|WP_010995637.1\|1728407_1729151_-\|DUF4384-domain-containing-protein	gnl\|CDD\|379557	pfam14326, DUF4384, Domain of unknown function (DUF4384). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	4.09539e-20
NC_003272.1\|WP_010995631.1\|1719362_1719776_+\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	5.89905e-82
NC_003272.1\|WP_010995649.1\|1741127_1743494_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	1.88739e-130

>NC_003272.1|WP_010995638.1|1729648_1731655_+|CRISPR-associated-endonuclease-Cas1
MFTIEHLNFAWLQVRAGSKSAGVDGISVDLFESMATEQLQNIAYQLKEETYTANPAKGFYIPKKNGTKRLIGIHTVRDRIIQRLLLDELYFPLEDTFLDCSYAYRPGHSIQQAVQHLYGYYQYQPKWIIKADVADFFDNLSWALLLTYLEELSLEPSLLQLLEQQLKSGIIIAGQYRNFGKGVLQGGILSGALANLYLTSFDRKCLSQGINLVRYGDDFVIACNSWLEANRILDKITGWLGEVYLTLQPEKTQIFTPNDEFTFLGYRFAGGEVYAPPPPEPVRPGEWVINDSGTPYFRLKPKPRKPVSHPPKACSIDKPINFPKASLSHYWQETMTTLYITDQGAYLSVKNQQFQVFHQGELRIKVPVMRVSNVVLFGCCNVSHGAVSMALRRRIPIMYLSQKGRYFGRLQTEGDAKVEYLMLQVERCQNHEFTRKQAEAIVRAKLHNSRALLLKLNRRHPSKIAATAISGIAELMEKLSLAESMDSLRGYEGKAATLYFQGLGSLFTGAFVFEKRTKRPPTDPVNSLLSLGYTLLSQNVFSFVQVIGLHTHFGNLHVPRDNHPALVSDLMEEFRAQLVDSLVAYLINSKIFTFEDFTPPDEKGGVYLQPHALKKFLKHWEEKLQSEVTHPHTGYQVSLRRCLELQVREYITSLTGEVELYRPMIWKL
>NC_003272.1|WP_010995637.1|1728407_1729151_-|DUF4384-domain-containing-protein
MSRTLVASDEGMKLARKALKARNLTQTDFAIEVGLGYTTVNNFLNGKPIYRTNFQEICVFLDLDWKDIAAFGEAELEELTPLDKLWQQLQLLSSPTEQMGLVLVKEETLRWGHKIPSRYEKSVQVGSHIRFEVNLETPGYLILLQKDTSGQLWCFCPSCFAPQAHLNTGKTTLPQEGSPITSFPIEGNPGKEEIIAVFTNEVPELDWLPPGDNDPLELEASHLVALLEYVTGGGEYQIWYTDYMITA
>NC_003272.1|WP_010995634.1|1723259_1724165_-|hypothetical-protein
MSIENIICIPPIPVDNIPSPWRETFQQLNQVPPPLPVCNFPDQTNEQMPDTAGKEIIYWVDIDKSGLKPRMSILPTLVEVCFSDGELPNYTLKLTLLDQPALQCHADMLDADWRIALYWIVKKQWDSDLIIPTSTELAQLYEPWAELLNQVLKLCTVCFDRKNYLSRHYLHAADWFLKIIQEAKQIDTEIMIENEAKGKDSTIKTKREIISQLRELNNSATLETSPHYYRLIKVALSMEKCDEFNKNYWKPFLSAGCKDIQGMERKTSQESFVVNHKIVYRAPGQGKGIYTLINLNHAKFR
>NC_003272.1|WP_010995633.1|1721071_1722886_-|site-specific-integrase
MPKSDALIITVSEGSRVSQPENAYELLKEFEKHLNQEHPNQSYSIFNQSETSVYRYTLPGWGSPHIQGKKITQAEKIAAQEFAKKISLKEFQNALKIQQKVFDDLKIPKSIQRNYRAILNRIIQFSQKYVVLQNESATQSQTSTAHHPLWRKGCNADIVKTTNKQWQPRFGLGCIPEDIVSDVLEKQLLDLEDFGIDILGIRATTVKLNTSRIKQILGAKPCRQCVASTAELNINTLIPFVPIRTGLRTLPIDSSLAQRLIQQEELKEQARQAAIKCQSDIKRLLRWYREERKVSPGMEQGVILVHIFVAKFLYRNETDKLQAEDYEDIPVIIMLRQLLREVIKRVDTATPAIDVDKKWLDWPEWLSLVETLRQEATVVVYVRPDREQPSGLRVLRGIGQSLQIFLLCSFWAFLPPDRQRTVRELEEGKSLVWKDDKWQIHLTSGATKIDNEEEWIPIPNVKFQDGTCLYQYFQAWLHDYKALPSYANLPWEGGLRAVFTPEHSFCFTMVDSGKPLTANAVRDYVKRRAYRLTKKAITPHLTRSMYITYLEENGVPENLMVSTAKSMHHSRATQRKHYDKRQQSKKMQPGLDLAVQLAQSILHK
>NC_003272.1|WP_010995632.1|1719763_1720099_+|XisI-protein
MAKLDEYRLKVQQILEKYAQYKPSYGDVEIELIFDTQRDHYQVISIGWNQQKRVYGPIMHLDIRNEKIWIQQNTTEVDIAAELIEMNVPKQDIVIGFHTPKMRQMTSFSVG
>NC_003272.1|WP_010995631.1|1719362_1719776_+|XisH-family-protein
MARDLFHNIVRTALEKDGWTITDDPLSIRCGGVDVQIDLGAERLIAAEKAGEKIAVEIKSFASASKISEFHTTLGQFINYRIVLRTEDPERILYLAVPLVTYNDFFSLPFTQTVVQETKILLLIYNIETEEIVQWLN
>NC_003272.1|WP_010995630.1|1718607_1719189_+|Uma2-family-endonuclease
MVAISQQPPKMTIEEYLAWEPLQDLRYEYVNGEVFAMTGGTIPHNDIALNFYRALYPHLRARGCRVNVSDVKVQVTPQSPYYYPDVIVSCDPQDINARRFIQNPKIIAEVLSPGTSGKDRGEKFTNYLKIPSLQEYLLIDSETISVERYCRGEGRMWLYYPYTEGDTITLSSIEFELAIALLYEGVILGTEAE
>NC_003272.1|WP_010995629.1|1716846_1718391_+|recombinase-family-protein
MENWGYARVSGEEQQTDKGALRKQIERLRNAGCSKVYWDIQSRTTEVREGLQQLINDLKTSSTGKVKSLQFTRIDRIGSSSRLFYSLLEVLRSKGIKLIALDQGVDPDSLGGELTIDMLLAAAKFEVRMVTERLKSERRHRVNQGKSHRVAPLGYRIDKDKYIRDRSPCVCLLEGRRELTVSDLAQYIFHTFFECGSVAATVRKLHSDFGIETKVLNWNKLEKSSRIVGDDDLDKIAFTPNKTNHPLRYPWSGLRWSIPGLKALLVNPVYAGGLPFDTYVKSKGKRKHFDEWKVKWGTHDDEAIITCEEHERIKQMIRDNRNNRWAAREENEVNPFSNLLKCTHCGGSMTRHAKRVDKSGQAIYYYQCRLYKAGNCSNKNMISSKILDIQVMDLLAQEAERLANLVETDEPLIVEEPPEVKTLRASLNSLETLPASSAIEQIKNDLKEQIAIALGATNNASKQSLIAKERIIQAFAHKSYWQGLNAQDKRAILNGCVKKISVDGNFVTAIEYRY
>NC_003272.1|WP_010995628.1|1715534_1716737_-|cysteine-desulfurase-NifS
MSVIYLDNNATTKVDPDVVEAIMPYLTDYYGNPSSMHTFGGQLGKAVRTAREQVAALLGADESEIVFTSCGTEGDNAAIRAALLAQPEKRHIITTQVEHPAVLNVCKQLETQGYTVTYLSVNSHGQLDLDELEASLTGNTALVTIMYANNETGTVFPIEEIGKRVKERGAIFHVDAVQAVGKIPLNMKTSTIDMLTISGHKIHAPKGIGALYVRRGVRFRPLLIGGHQERGRRAGTENVPGIVGLGKAAELELIHIETAIKKETRLRDRLEQTLLAKIPDCEVNGDITQRLPNTTNIGFKYIEGEAILLSLNKYGICASSGSACTSGSLEPSHVLRAMGLPYTTLHGSIRFSLCRYTTEAQIDRVIEVMPEIVERLRALSPFKNDEAGWLQAQEQTLAHR
>NC_003272.1|WP_010995627.1|1714500_1715403_-|Fe-S-cluster-assembly-protein-NifU
MWDYTDKVLELFYDPKNQGVIEENGEPGVKVATGEVGSIACGDALRLHIKVEVESDKIVDSRFQTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNYRGIPLAAHDEDDEGALVCTCFGVSENKVRRIVIENDLTDAEQVTNYIKAGGGCGSCLAKIDDIIKDVKENKAATNLNNKGGSKPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV
>NC_003272.1|WP_010995640.1|1733487_1734309_+|hypothetical-protein
MDWLPTIDLSHLWDLVIAQTPTPTTTPSPVVNPAKNINDIELLKSQLEFLKATNGQLGESFNRFVAAMQFTLVVFAFLGGFLAFAIGKNLDDAKKLASQLINREVENKITDLVQSEVESVKRSLQRERVIGSTVVDYYLPSDDTTEPDDCKLLRTRGFAKVRFCNQKRKPKKPLGDVLVLDLINSKLLEGQDFIGLSDKEAENKREEKVKIQIDAILPLMEKTTVLVIYVKGRFREIDNLAARVDYYYVPVNAPISLMGIVADSAYVAYGEKQ
>NC_003272.1|WP_010995641.1|1734361_1735078_-|hypothetical-protein
MANINYFITDEHLQIAHKIAKFLNNEQKRIEPGKEGISTELSKLITYLDAKIKQNSYVDKTLRKPSRFFTYIEQLVEHGKTIGHSKKTTTYYESINEVCNQYLKSYEKKPLVIIQILGWSQRLMRYYKTVDDDDDTDISPGISTEVVVRKIPKVIETPKIVKPQKTEDIKTLESPQSLKPTKPIPPKLIEPKKSEDSKNLQRPRIPDSPKPIKNSQPEAPKPVEPPKPWERVPKKPSK
>NC_003272.1|WP_010995642.1|1735087_1736143_-|CRISPR-associated-protein
MARNSSRSQNFGGSNQERGPRPYDFVYFPTTPPTQNQPPGHHKYLPNHLHGTLFLTLTVQTTLHISTGVVLLGEDINQADIPLIKTMVQGNDNELLIQGSSLKGCIRSVYEAITNSRVGVKPKQPNEYPEERLPAKEKNQLCPASIVFGASGEKWGWQGLITIQDAHCEITGSEVGFMPNLWRPRPDENQAYYNNDGKTVGWKFYYNMKNSIDKGLDNGIPVQVAFRNDEFSTQLNFKNLKPEELGALLIALGQDKNYPLVLKVGAGKPIGMGSMTVAITEAEIVQNQADLYNRYTSLSLPSSQLLTDESLQAFIQSKIQQAHESLIAQTQLQKLSEILNSSTNRIPYESY
>NC_003272.1|WP_010995643.1|1736144_1736672_-|hypothetical-protein
MCFVGVNQQPLSAEELIKLLQKFSTPPSYYFLRWAHRVGGFWRLGAEDSEYTSLEADVRDRLQQNLNETFPSPQGQLFNSILEIRWQQKQGKYEVLILSSQDKASILQTQDGENNFRLIKAGHWEIIEQNLLLHSPTETRFPKDLNSEDIKNIAQRYFRYKHTATVHFVALTIKK
>NC_003272.1|WP_010995644.1|1736659_1737673_-|CRISPR-associated-protein
MHKQFVNHCTIDLTIIPDGPILIKSGREGADPTKPQMEFVETFHNGKSIIYLPGSSLKGAIRAHAERIVRTVGHPEYEKPSNTELVWANNPLDTDKYDYLYENPQAEQGVKKKLSAPRIYKESSFTDQIFGNIAIASRFRIEDAYPDTSVPLKIEERNGVAIDRVFGSVAHGPFDYQVCTAGAFKTKIHLKNFSLAQLGLIALVLRDLNAGWFGIGFAKSRGLGIVRLEYNSAVVQYPGCILDNNNQIYSFGSSTPWDKIYLLGAGKFLRGDNANPYNFPTNDTEKQEVKNVVLTAMDFKFGVELRWDGENGVRDLFTKAVAAWSHLLQNGGAVCAS
>NC_003272.1|WP_010995645.1|1737677_1738604_-|CRISPR-associated-RAMP-protein
MFEIFKNRLEIIGILETVTALRISAGRSTEPIGSDLPVIKDAFGRPLIPGSSLKGALRSRLESFLRGIHHDFAANPAQETEWSIPPDEMASVKERIKNLTPQEKEAQLHEYIINNTDLVSSLFGSPWLASKFQIRDLTVSKPDDNWFGQYQERDGVAIDRDTETAGDGKLYDFQVVPAGTPFIFHAVIENAAEWELGMLMIGLHQFQTEQIPLGGGRSRGLGVVKLIIEDMKWVDVRDENYKRDKNYKPQTDPKKVQDYLKSLINNSSNSTSSDIDSQSLKQAWADAFINHLASELQKRTNTTATSSH
>NC_003272.1|WP_010995646.1|1738619_1739075_-|hypothetical-protein
MTDLTEQQQQREIQQKELKIQKEIRQIEDDLVIAIETILKDKDSCKNLEESQYRNLMHVADTTESIAVIKNFLRYQLGRDKKWGVGENSIAQRIINDIDTLLQEKAKTIVEEVKYMEKFKPVWLELTRRYLGYGSRRLKYINANKDNKYES
>NC_003272.1|WP_010995647.1|1739071_1740376_-|CRISPR-associated-RAMP-protein-Csx10
MKRIELTIKALSPLAIGKQKPGGSINEAERYIPGSVLRGAIAKHILQRAGRELENLATNGGDFADLFLAENPAIFQNAYPAVAKVGSKHQVVDNNIKVLPATAVSSKANPGFLPKGHGVFDTLIDSFCAEQFQHSYDPSSLKALEQGVDPRVETYNSLYSKHNEQYCTHAATSRLLTRVGINRYRATSSDDILYSIEVLNEAFIVANEGKNQEWDNYVYRGYINVSNDELATKLTNFINNNSEVFRLGGSVSRGLGKVEITAKEIPVADDISSRIHVFNQALHKRWQDWSEAFGDGLRPAKSDRTPNPTSKRTFFTLNLHSDVILTEDWQRTTVISPEMLQQFADVEDPSLKLHTAYSSYSYTSGWNSAWGLMKDVELVTNKGSVYLFSTENRQLWEDALSSLELRGVGDRTCEGFGQVEICNEFHQIFRENPV
>NC_003272.1|WP_010995648.1|1740372_1741131_-|CRISPR-associated-protein-Csm3
MIDLSTLSQRASENWKINAIIDTALCVGAGGSSGSLADKPIVRNAQRQLLIPGSQIKGRLRHECEKLARALGWQIFYAPVATELCPNQGQVSSQFQKIYQVSGYKGYHCVVSQIFGDPILPSRVIVDDFICTTPVDELAEVFRPGVTINRRRRTAEENKLYLLETSPANAQLEFKGKIYLQPRFRSGSPDLAKPLIFAALRRIYALGGSKSTGLGWLHWQNLPTLSDDDPIWSNLNAEEYLANRQVSVGGAA
>NC_003272.1|WP_010995649.1|1741127_1743494_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MNNSRTRTITALAWCLAWGERHNLNQDELSILHQIERAIKDEPDVPESIKSVVKQAKRLYDIPNDYEPETLEDLKKDYPDLWDEKRRIGLVYGGATKIKQYVFEAAKLNDIRGASALLDRINLDDIPGFFGEGGRSHRIGKWLDENGFSDLRQALIPELIIYSTGGSVLAFCPAALTDKLANAIEKRYTHETLTANSCAVGDTFRLLELRFGLLQDPIENTLWLEKYKQKQSNPNPNPIIQAYFNQSNESDLNKKFWLRKNFNELVGKLANQFTHRRNGNASATARPTRSFPPMFETHPYLERDETDNRAAVAKTNLPGTPSFSDALARKVIVGQRSKRDRQQRRRWYKNFRFRRQSGKEELWSPGYFPSWVTRFHKFLEQSESDRQYYQITQGEPVTEAFSLREIGNVSKLRGFVGYIYADGNNMGGYLRQHIRTPEKYREFSKQVLDATRNAVYIALEKHLKPRRLNNLIDPDNAHRNGDWIYPFEIITIGGDDVLLIVPADKALDVAKTIGEEFEREILKSPGFRLNKPYEPEKVHRYQGEKPSEYTSQCELSMSAGVLITAENTPIYYAQELTEQLLKSSKKLAKELKRYNYYGGTVDFLVLKAVTMIASDVKDFREQGLTKGNLKLYASPYTLHELGGLLQTVEALKKAKFPKSQLYQIRSLLERGKHTAILNYRYFRVRLQQGQAELQREFEESWCKALTNDGNLAPWISDRRCIIRNLMLLLFVEASPQAGFCLHYQTLRLLKKPNYETLWRDLVDLYPFLVEDEPTPANQGEQQEQGVKQ

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Crispr_ID: NC_003272_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_9

1836813-1837723

TypeI-D

I-D,II-B

Consensus_repeat	Method
GTTTCTATTAACACAAATCCCTATCAGGGA----------TTGAAAC	PILER-CR
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CRISPRCasFinder
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CRT

12 spacers

cas2,cas1,cas4,cas6,2OG_CAS,cas3,csc1gr5,csc2gr7,cas10d

The CRISPR arrays of NC_003272_9

>merge|NC_003272|9|1836813-1837723|PILER-CR,CRISPRCasFinder,CRT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAACAATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGAGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACTTCGGCGGGCAATCTTAAAATACCCTGACCTGAAAGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACGGCAGCACAATACTTATCACGGGCTAAATTCTGGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACCTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTACGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACCTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTGGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACTCTACACTGACCAATGTTGAAAGTATCAAGACAGGGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACAAATGACAACTATTATTCAATAACAACGATGCCAAAGTATGGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACAGCTATTGCACATTTACAAAAGCTCGGATATCAAGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACTCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAAGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACCGGATAATCCCTTACGGATGGATTCACAGATTTGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACTGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAATGTTTCTATTAACACAAATCCCTATCAGGGATTGAAACTTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGCGTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC

>NC_003272|9|6|1836813-1837723|PILER-CR
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	GGCAGCACAATACTTATCACGGGCTAAATTCTG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TCTACACTGACCAATGTTGAAAGTATCAAGACAGG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AGCTATTGCACATTTACAAAAGCTCGGATATCAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CGGATAATCCCTTACGGATGGATTCACAGATTT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC

>NC_003272|9|8|1836813-1837723|CRISPRCasFinder
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	GGCAGCACAATACTTATCACGGGCTAAATTCTG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TCTACACTGACCAATGTTGAAAGTATCAAGACAGG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AGCTATTGCACATTTACAAAAGCTCGGATATCAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CGGATAATCCCTTACGGATGGATTCACAGATTT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC

>NC_003272|9|5|1836813-1837723|CRT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	GGCAGCACAATACTTATCACGGGCTAAATTCTG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TCTACACTGACCAATGTTGAAAGTATCAAGACAGG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	AGCTATTGCACATTTACAAAAGCTCGGATATCAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	CGGATAATCCCTTACGGATGGATTCACAGATTT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC	TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC
GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995744.1\|1839676_1842820_+\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_003272.1\|WP_010995737.1\|1834183_1835185_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_003272.1\|WP_010995738.1\|1835378_1836272_+\|IS982-like-element-ISNsp1-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_003272.1\|WP_010995750.1\|1850342_1850732_+\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226769
NC_003272.1\|WP_010995748.1\|1847709_1848378_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_003272.1\|WP_010995732.1\|1828646_1829405_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NC_003272.1\|WP_010995743.1\|1838354_1839092_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375603
NC_003272.1\|WP_010995731.1\|1827610_1828645_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_003272.1\|WP_010995747.1\|1847128_1847605_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995751.1\|1850769_1851159_+\|DUF4904-domain-containing-protein	unknown	unknown	gnl\|CDD\|292864
NC_003272.1\|WP_010995734.1\|1831759_1832377_+\|2OG-Fe(II)-oxygenase	2OG_CAS	-	gnl\|CDD\|379309
NC_003272.1\|WP_044520991.1\|1829397_1831683_+\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_003272.1\|WP_010995749.1\|1848816_1849932_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NC_003272.1\|WP_044520995.1\|1836265_1836556_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_003272.1\|WP_010995745.1\|1843957_1845817_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_003272.1\|WP_010995736.1\|1833469_1834060_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_003272.1\|WP_010995742.1\|1837760_1838345_-\|DUF4231-domain-containing-protein	unknown	unknown	gnl\|CDD\|379418
NC_003272.1\|WP_010995746.1\|1845981_1847082_+\|ferritin-like-protein	unknown	unknown	gnl\|CDD\|372375
NC_003272.1\|WP_010995730.1\|1824896_1827590_+\|hypothetical-protein	cas10d	mkCas0201_cas10d_CAS-I-D	gnl\|CDD\|274469
NC_003272.1\|WP_010995735.1\|1832406_1833279_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995744.1\|1839676_1842820_+\|TIR-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	9.49958e-131
NC_003272.1\|WP_010995737.1\|1834183_1835185_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	7.01542e-150
NC_003272.1\|WP_010995738.1\|1835378_1836272_+\|IS982-like-element-ISNsp1-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.74296e-27
NC_003272.1\|WP_010995750.1\|1850342_1850732_+\|DUF4440-domain-containing-protein	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	7.86763e-42
NC_003272.1\|WP_010995748.1\|1847709_1848378_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.8571e-29
NC_003272.1\|WP_010995732.1\|1828646_1829405_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	4.2278e-93
NC_003272.1\|WP_010995743.1\|1838354_1839092_-\|hypothetical-protein	gnl\|CDD\|375603	pfam18171, LSDAT_prok, SLOG in TRPM, prokaryote. Family in the SLOG superfamily, fused to or operonically associating with SLATT domain in diverse prokaryotes. Predicted to function as ligand sensor in conjunction with the SLATT transmembrane domain.	2.76356e-81
NC_003272.1\|WP_010995731.1\|1827610_1828645_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	6.09482e-170
NC_003272.1\|WP_010995751.1\|1850769_1851159_+\|DUF4904-domain-containing-protein	gnl\|CDD\|292864	pfam16247, DUF4904, Domain of unknown function (DUF4904). This domain, approximately 130 residues in length, is mainly found in several uncharacterized proteins around 340 residues in Actinobacteria, Cyanobacteria and Metazoa species. It is mainly composed of antiparallel beta sheets and has a cystatin-like fold, but the specific function of this family is unknown.	2.78829e-86
NC_003272.1\|WP_010995734.1\|1831759_1832377_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	7.93123e-08
NC_003272.1\|WP_044520991.1\|1829397_1831683_+\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	3.4328e-163
NC_003272.1\|WP_010995749.1\|1848816_1849932_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	1.46479e-129
NC_003272.1\|WP_044520995.1\|1836265_1836556_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.7056e-38
NC_003272.1\|WP_010995745.1\|1843957_1845817_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.52946e-98
NC_003272.1\|WP_010995736.1\|1833469_1834060_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.23019e-64
NC_003272.1\|WP_010995742.1\|1837760_1838345_-\|DUF4231-domain-containing-protein	gnl\|CDD\|379418	pfam14015, DUF4231, Protein of unknown function (DUF4231). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 148 and 288 amino acids in length.	9.88728e-39
NC_003272.1\|WP_010995746.1\|1845981_1847082_+\|ferritin-like-protein	gnl\|CDD\|372375	pfam12902, Ferritin-like, Ferritin-like. This is a family of bacterial ferritin-like substances that also includes a C-terminal domain of VioB, polyketide synthase enzymes, that make up one of the key components of the violacein biosynthesis pathway. Violacein is a purple-coloured, broad-spectrum antibacterial pigment.	4.68239e-85
NC_003272.1\|WP_010995730.1\|1824896_1827590_+\|hypothetical-protein	gnl\|CDD\|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	0.0031463
NC_003272.1\|WP_010995735.1\|1832406_1833279_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.36141e-82

>NC_003272.1|WP_044520995.1|1836265_1836556_+|CRISPR-associated-endonuclease-Cas2
MLSRTWRYLVISYDVPEDKRRTKIHKVLKSYGQWMQYSVFECDLTPTQYAKLRSRLAKLIKPDQDSIRFYHLCACCQGKVERIGGEMPIDTTVFFA
>NC_003272.1|WP_010995738.1|1835378_1836272_+|IS982-like-element-ISNsp1-family-transposase
MFSIEEFIIAVFCCVDDVLMEITQIYPIKRRGFAPSLRESEVLTMEVVAEFLGIDADKDIWKYFHRHWLGLFPQLKSRYAFIRQAANCWQYKELIQQKLAQYLGAYSDQLHLIDGLPIPLCGLSRAPNCRSFKSLADYGFCAAKKQTYYGFHGHLIVSGTGVISGFTLTPANGSERDALWDLITRIKGLLIGDKGYLSQFLSGELKEVGITLQTPLRSNMSDSRSRSSVRLMQRFRRLIETVIGQLVERFHIEKIRARDMWHLTSRLNRKILAHTVCFWLNRHNCDPLQFDDLVTEY
>NC_003272.1|WP_010995737.1|1834183_1835185_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTQDDSFISKVDERLNVKFEKKVILDVPLIKVDGLVVMGRASISPAAIFELIDKKIPLTFLTNNGKYLASLEPEMGKNIFVRAAQWKAAGESEQAIHVTQGFIRGKLKNYRHTLLEAQRRYEVDLNSNISQLSNAIASIDKANSINTIRGLEGAGSAAYFGCFNQLIRVDNFSFHTRNRRPPIDPVNSLLSLGYSLLRHDVQGALNIVGFDPYLGYLHTERYGRPSLALDLMEEFRPLIVDAVVLTAINRRMLSPKDFITEPISNAVSLTKEGLHIFLRLYQEKKQTQFKHPVMQKKYTYQETFEIQARLLAKYLLGELDKYPPLVMR
>NC_003272.1|WP_010995736.1|1833469_1834060_+|CRISPR-associated-protein-Cas4
MNIEYIPIAALNQYAYCSHRCWRMFCAGEFIDNQYTIEGTTLHDRVHTTSENQREETWQVRAIWLKSDKYQLIGKSDLIESADGQFYPVEYKRGRKGEWDNDELQVCAQALCLEEMTGQTITTGYIYYAHSHQRQLVEINQELRKSAIATIQAVTNLLTTGIMPIPNYSKRCQGCSLNLQCLPKAIDRVKTYQEVS
>NC_003272.1|WP_010995735.1|1832406_1833279_+|CRISPR-associated-endoribonuclease-Cas6
MPHSLVLNLLPQSPIPPQYLTGRHLHALFLTLVSSVDSTLGDRLHDSTADKAFTLSPLQIQGEERGRYKSKIPNSYSLQYLHQQAIPAGTPCWWRISLLDDTLFSQLTQLWLNLNPNHPWHLGPANLYITSIQGTPQSTQPWANAITYTQLYEQAGENNDLRSLGNNHTLNFTFTTPTAFRQGKFDTTLPTRECVFNSLLSRWNKYSGIEFSEIALEAIFPSFLNIHTEILADSRSKFIGILGEINYRILGDIEPIQIKQINALADFAMYAGVGRKTTMGMGMIRRLYSS
>NC_003272.1|WP_010995734.1|1831759_1832377_+|2OG-Fe(II)-oxygenase
MKHYQQQANAFPGDYLNNLWGEIHACPYFAVNNLNRDFVGTKGFSVVFRRSHISTVEQKFPYFKPYLDLALHANCNAFYLNPLLLKEGSRVDPHIDRSLRSYCKTIEPPMFVSVLYVRVPENMDGGELVLKSHKRQLGQIKPQMNTLLYFQGDLTHSVNAVKTPGNRLSLVCEQYSLSEEELADIPEFTIESRVAQATTKKRKSA
>NC_003272.1|WP_044520991.1|1829397_1831683_+|type-I-D-CRISPR-associated-helicase-Cas3'
MSNQRLVIRLEPRSISACASLPDELSFMGNALQHQVDVFEQSKDADIILDLAPTGTGKTKAGLTVLKHQQNKSAIYIAPTNALIEQQTEAAKEFVRDANLRHVVKSASAKDIKSWPNDKVGSRSGEKLYNVLRNPATVFPDIGANTPIILVTNPDIFYYATFFAYNNLDRGNIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFYLAYSQVFRFFENGRKVVLLTATPEPACELALQNLKQAGVKIARIDGEAGNTSFLPSQTAVNLELRPKPDIKEEWLAELAAEVIQRFRERPDENGAVILDSLDNINRLSDLLRQQGLGDDIGRITGPAPKKDRERAMQCQIILATSTVDVGFNFERHPKPKRQNLDWLIFSARDRAAFWQRIGRVGRVLGKSETNIDSEAIAYLPANAWEEGLTSLDTTGGRTALKDVLETLPCLDKPFLKAYWRSEAFLEIARPLLELEEMLEGLAEEKLILELFNTLKSIFEGNRTWDDYRYRMKLLRGAETIAKKTPKEIKKDWKYIKGGQAFVRTFIKAKFIEDWEDLQSGRATIEEYINLLLKQDDDVLAELKEFAEVFSISYAPLFSFRSSLFETLSIRDPHGLILDESEETRLDTFHLLRYYEFVQNGDYIEVASRANETYQLSFELRYTDNWQEFISTELNKLTAFKNCQIIRSAGGAIRPTPLIQALNKHLLPGVIICPRTNATVIFQLNKQGITSYPITIVCNDMEKEYRLFSGLSGILTIAMKFKQLRLPDDEVFIAG
>NC_003272.1|WP_010995732.1|1828646_1829405_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MSTILFQQAKLVELYCLEPVFFASRELSDTYYTEGVIGNYALTYALGRVNSPYRLQGQATGRPTYKEDLQPIAQDFYILPASPVGRVTFRFERFNALSDAYWYAMTNNRVATAREDLPLQRQGKKPSSFRPSNFPQTGRLRMIERRNKFQTLVFGNYQLPNYIRLGKFMSKVKVNVLNEFPVTLLPEGEYQSQHYLNAADLPQQIEALAFDLISIPPAPIIKNLHFRGAAWQVGEMIVPAGLHFCGRESNNE
>NC_003272.1|WP_010995731.1|1827610_1828645_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSISKLSSVLATSYENFPKGRFITLVILRTTHSETIFRTEGSGEPMCSEFVQAGLEGENQKTIIQRLVMTKRKQVAPERRYGREHLRAHELLYTNPKDGSLCSLNTNAPCEMCVDCFLYGFAAGGGGAQKSRIWTEDAFSILPASDVVGDRTINAIYETGTMRDEKGNASTALNTSEYIKPGVHFLDVVTLKDVTADELRYIIGNILFTSRYGAVSSRVGRMENEILGVFGSITELPSSLELVQATYDALGKPLEHPLNINQLITASKQVIANWKNKRGVSVQLSEAELADLLTDVETHWSELERDTFLKRLSQSYEPFRQVSPEKNKGKGKGKGKNTPVEVES
>NC_003272.1|WP_010995730.1|1824896_1827590_+|hypothetical-protein
MIKRSRLLNGLPKSLEERYFTEIRPQLYENHAHRHQYGVRTGTTLAEHLDSACQFILTVSRIAEVPEDKRPLLLAATAVHDLNKLDTQGRNVKTLARNQAFLREQLEKACVLSFVVSEADLELVRKLIERHSGHNVSDGARFLPEDPNIERWAAMLTSADLFDLGIPDAQRFRKLEKELTVAFGRSCNLFRIRISEDKGYITALLLGACEEVLQKHGLNPLAIFPDGELFEGGALPNVDLTQEIAAVWQIKIDQVFGNNIERLVRATKDGIKISHQAIQQNIEEVLVNVEALLERKKAGYKPDKISKDITKWGEAAGADAIIKASELQLLPVSNAEEFAISEGLKAAYLSYREAGLNPKEAWDKIAHHTGISELQRTAIESFNGQYGRPLFAAKAAVKGMEGIKEALQESFQLRKESTQISEETEVSEEMIAAVSRMVNLPFAIRLNGVDHLNAYVEANPRQRCSLGSTSTDIDELISDNMPPGTKVQAFSNRLPGGISAEPKRQADSIAALAYQLMAVGANFPAVKKQDPLYLHLALPKGSAPELLRIWRGLLKQLAATNAEGGTVTIDELKLYKDNLLEFKANKVVGLALPKRPDFVHTSVIIPLLWGDVNNSLALLKSLRLALEISLSLDIGFPFTLSSNLEVELFSDVYGRIEGIPSALQTLLGNGQYQQRQDAEKILERLRCIGKLATSVASIQKADDCLYDLARACVRPIELYYVLLRWTLREQDEPNLSVIWSRICEPLNILLESFMPDENLLLTKYLKEAAQVAAEGKIWGSSFKRTAQAEPFTAFIAAIRSQKSYLGLDVIFAALVQQYHTRLDRIREHGVGATKYEQVKRYYELLRKLYEEVYSARPEKFLSDQKTLEAAYLFFLEEARKQLKSQSEDDSIATTTTV
>NC_003272.1|WP_010995742.1|1837760_1838345_-|DUF4231-domain-containing-protein
MANKDDYQEFLKGKFTNLIDSLNLSELQTQFLFSRWLDQMLWMERQAGKSRNRYYRLRLVTIIGGVALPALVSLNINSSQVREIFVWATFSLSQVVAISAAVEEFFHYGERWRHYRRTAESLKTQGWQFFQLTGPYVNYETHDKAFSNFANQVEEIIQRDVEVYATQVVQEKKQQDNGNDDKQDNVKENEESKV
>NC_003272.1|WP_010995743.1|1838354_1839092_-|hypothetical-protein
MVNFFRLNLSSNQAAAVTVSETAELPEALEQLGLSNSRPVLVIVGGASQTSEADFLRIQSLFVEVLAPIAQSLGAYVVDGGTDAGVMRLMGDARSQINGQFPLIGVAPTAKVILPNQTTILADDATPLEPHHSHFVLIPGSKWGDESPWIVKVATLLANGLPSITVLINGGEISFIDALNSVIAGRLVIVIAGSGRTADKIASALRGYATDERATELAASDHIQTIDLEAAPEELIDTMTNLLLN
>NC_003272.1|WP_010995744.1|1839676_1842820_+|TIR-domain-containing-protein
MNKFKSAFISYGRADSKAFATKLHQRFVEAGLDIWFDQNDIPLGVDFQNQIDDGIEKSDNFLFIIAPHSVNSPYCGKEIDLALRRNKRIIPLLHVEQITQEIWQQRNPGREASEWEQYQAKGLHSSFPNMHPAISKINWVYFREGIDDFEKSLAGLLELFLRHQDYVHQHTYFLAKALEWEQKQQQSQYLLIGEEREQAENWLKLRFRDEQPPCEPTDLHCAFICQSIKNANNLMTQVFLSYSENERLFMEKIAKILMRESFTVWTNKTDIQSGADFTESINRGIEEADNVVLLLSTASLQSEYCQMELSYAFSLKKRIIPLLIEPVDIEQIPVELSILQFIDFTDQEEQGKESADTDRLINVLRRDEAYYEQHKILLAKALKWERQKRNPSILLRHHNLRHAEDWLKIAQQNTQHPPIPLQAEFIAESLKQPPQAALDVFISYSRADSDFARKLNDTLQIQNKTTWFDQESIASGTNFEQEIYRGIESANNFLFIISPKSLSSPYCTTEVEYAMNLNKRIVTVLYREIKGATLHPGLAKVQWIDFSQHNTDFLTKFGELTRTLDSDPEYVRSHTRIFLKAKDWEEHNRDDSFLLRGKDLLASEEWLKQSDNKQPAPTTLQLDYLAASHAFPYRKIKLRSVLLTSLVVTTVIFLARLLGFTQPLELAVYDRMMSLRGDEPQDERFLMVDVDTESIEKLNEDYTGGRGSIPDQALDKVLKILSQYQPSVIGLDFVRDFPAEGNLKEHLQQAENFIAVCKNSYISDRGEKILGLKHPPEVPLARVGFSDLVDDDAKGGRFVRRQYLMQNPDPKYCNTREAFSLVIARRYLEAQGQKYISPLDIKSKEYVQDMQFGKALIPQLLGKGGGYQDINNQLEGYQTMLKYRVSGRDPYNFAPRVNILQVLNNKVSAEKIRNRIILIGFTDRQTRQADYWSTVYGDVPGVTLHGQMISQILSATLDNRQLIWWWPLGYETLWMFGWALVGGIVCWRLNRTLHIGIAVVGSIACLYIICSVILVYQSGWIPFKPPFLALLGTGAGVLYLTNNLRRN
>NC_003272.1|WP_010995745.1|1843957_1845817_+|GMC-family-oxidoreductase
MSLSQMVNVDCDTVSKTVYDAVIVGTGVAGAIVAKELSQQGKRILIIEATVHKDLTLAGFQSYVDTFYKAVDKNPNSPYPANSNVQSPTDYNDYFIEQGPMPLAGSYTRVLGGTTMHWEAKTPRMLPEDFKLSSTYGQGLDWPIDYHDLEPYYRKAEHEMGVCGDVDEQRALGLEFPQDYVFPMEKLPPSYLDQKVIEKVNGTNVELYGKTHTLSFSTFPQARNGVPNPKYDQGNLFVPDGVTSVHPVQYGERCQGNANCVPICPVQAKYDARRTLSKAFETGKVHVLYQAVAYKVEYDRQTGRITAIHYKHYKKPNSSEYTTGIAKGTLFVLATNAVENARLLLGSDLPNTSRLIGRYLMDHPFTLAWALMPEVTGTMRGPLVTSGIGTFRKGDFRKKQSAFAVDIHNDGWGWATGSPKSEVEDAVDNKNKYGQELRQTLISRISRQLLLAFMCELLPEYGNRVTIDPRHKDKLGNYRPVINFNLPDYSRRTLAYTRKVSRVIFERLGAEDYTHYDPQDPAYFEFEGEGYVYKGGNHFSGTHIMGTTPLNSVVDSYLRSWDHKNLFLVGAGSMPTIGSSNTTLTIAALSFRTAEHMLQELNSYNLPVSNLQISNLQAS
>NC_003272.1|WP_010995746.1|1845981_1847082_+|ferritin-like-protein
MTIAADSLKLITTVEQLKYYLIQAMKIEHATIPPYMTALYSIKPGTNLEAFHIIREVAVEEMLHLTLVANVYNAVGGSFASPVLTAPNFIPKYPSYLPTGSTDFKVGLTKFSKKTIETFRKIERSQDVEEGDPLVESRTLQEYLLEVVGCDPTKTFYSIGLFYAEIIRGLNALYKEKGPDLFCGDPQRQITPEYYYNGGGDIIPVTDLRSAIRALKVIQDQGEGSRSGTIYDAERELAHDYRFQQILLEQYYVIDKDDPTKSDQPNEPTGKSFTVDWKAVYPIKDNAKLSDYPEGSEVRTAALEFHSAYREFLTKIEYAFDGHPEQLIPAVGGMFRLKEQANSLMRNPIPGNPEVNAAPIFRLDKF
>NC_003272.1|WP_010995747.1|1847128_1847605_+|hypothetical-protein
MDINTPEFREYFLNLSVVLTGFSKFQLQGTGLATLYFENIRDIIGEDIFGELLTNFHKLEVEKTEKNHESIKQILASEKFGPIARNIIKIWYIATWYALPQSWREVFGTKEKDGTFIISPQAYPEGLLWPAIGVNPPGAKGQGYGTWSEPPLVSLNKS
>NC_003272.1|WP_010995748.1|1847709_1848378_+|pentapeptide-repeat-containing-protein
MSIKSWFLRISTIALSIFFSLTIFISPANAFVPSDQTKLLVTNACVNCDLSGADLSNKDLYGSALAGANLSKANLSGSLLNDAKLEGANLTGANLSEAIMMGTDLSSANLTEANLSHADLYNALLSKTKLLNANLGDADLTEAVISDADLSNASGKNTKLKAAVLSRANLSNADFSSSYMRNTRLSSAILKGTNFYRTDLSNSLMPDGTTYNGDVAKFGATQ
>NC_003272.1|WP_010995749.1|1848816_1849932_+|myo-inosose-2-dehydratase
MLAKNECKINRSSILSKIKEIRRLFALSFVFILVGINSFILPATAAPSGNNSVLVSLVTPSSKPALLNPTFDPTKVNLGITPTGWSNSDDLTIDLDPPIPFEQILSEMALSGFKGSQMSPKFPSKIKDLKKELKLRDLKISEPWVGTLFTEGKDDETLKEFNKQVAFMKEMKGKNIVVAELGGAVHQKKCVDPLVNRPRFTDEQWVDLVKGLNKLGSIANENGMQLVYHPHIGTGVENFADIDRLMKGTDSENVKLLLDTGHLYYAGVDPLAVTKKYANRIKHVHLKNIRQPILDASKKTGRSFLDSIRAGIFTVPGDKDGAIDFQPILQELAKAKYEGWLMVEAEQDPNKANPLTYALIARNYLRQVTDL
>NC_003272.1|WP_010995750.1|1850342_1850732_+|DUF4440-domain-containing-protein
MKLHDQDQIRSIFEEVYPDNVRGRDLSAYADMYTEDALWMPPNGPDRCGIPDILEGFADTIANQDIDPIFTAEEIEVKGDCGYVIGISLATIRPKDGSPSRQVKYRALWLMKKDCDRWKISRQIWNVKP
>NC_003272.1|WP_010995751.1|1850769_1851159_+|DUF4904-domain-containing-protein
MDTEKYHEMLKTYFRSFETGDFSQVQFSCHLEFLSPISGNTFKGIEEVISFLKGVTTRVSEVNIMSTTVEYPRASGVWQMRTTKGILYTLHNFFRLDEEGIVYIWPMFDPKAVIENPDALIQWLTGKDY

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Crispr_ID: NC_003272_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_10

1976173-1976273

Orphan

Consensus_repeat	Method
AGGGTAAAACAAGCCCAAAGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_10

>merge|NC_003272|10|1976173-1976273|CRISPRCasFinder
AGGGTAAAACAAGCCCAAAGTCAACTGGATGAATTATTAGCCGGAACTCGCTCAGAAGTGATTACTGCTCAACAGGCTAGGGTAAAACAAGCCCAAAGTCA

>NC_003272|10|9|1976173-1976273|CRISPRCasFinder
AGGGTAAAACAAGCCCAAAGTCA	ACTGGATGAATTATTAGCCGGAACTCGCTCAGAAGTGATTACTGCTCAACAGGCT
AGGGTAAAACAAGCCCAAAGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995835.1\|1987790_1989254_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|224938
NC_003272.1\|WP_010995818.1\|1964097_1968810_-\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|225858
NC_003272.1\|WP_010995815.1\|1951709_1955501_-\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274311
NC_003272.1\|WP_010995829.1\|1982832_1983135_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995834.1\|1986106_1987522_+\|ATPase	unknown	unknown	gnl\|CDD\|223715
NC_003272.1\|WP_010995825.1\|1977238_1980343_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_003272.1\|WP_010995837.1\|1990620_1991904_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NC_003272.1\|WP_010995823.1\|1974359_1975343_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NC_003272.1\|WP_010995817.1\|1959319_1964083_-\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225858
NC_003272.1\|WP_010995832.1\|1983933_1985424_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_003272.1\|WP_010995821.1\|1972328_1973108_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995820.1\|1969529_1970363_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NC_003272.1\|WP_044522856.1\|1950937_1951654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274311
NC_003272.1\|WP_010995822.1\|1973155_1974103_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NC_003272.1\|WP_049942394.1\|1980941_1982699_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_003272.1\|WP_010995816.1\|1956110_1959074_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|341253
NC_003272.1\|WP_010995819.1\|1969134_1969392_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
NC_003272.1\|WP_010995833.1\|1985456_1985744_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_003272.1\|WP_010995830.1\|1983277_1983514_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995831.1\|1983539_1983806_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995835.1\|1987790_1989254_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	4.92847e-148
NC_003272.1\|WP_010995818.1\|1964097_1968810_-\|type-I-polyketide-synthase	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_003272.1\|WP_010995815.1\|1951709_1955501_-\|acyltransferase-domain-containing-protein	gnl\|CDD\|274311	TIGR02813, omega-3_polyunsaturated_fatty_acid_synthase_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.	0
NC_003272.1\|WP_010995834.1\|1986106_1987522_+\|ATPase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.06733e-43
NC_003272.1\|WP_010995825.1\|1977238_1980343_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_003272.1\|WP_010995837.1\|1990620_1991904_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	4.21624e-125
NC_003272.1\|WP_010995823.1\|1974359_1975343_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	0.0084462
NC_003272.1\|WP_010995817.1\|1959319_1964083_-\|acyltransferase-domain-containing-protein	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_003272.1\|WP_010995832.1\|1983933_1985424_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_003272.1\|WP_010995820.1\|1969529_1970363_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.96107e-30
NC_003272.1\|WP_044522856.1\|1950937_1951654_-\|hypothetical-protein	gnl\|CDD\|274311	TIGR02813, omega-3_polyunsaturated_fatty_acid_synthase_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.	2.16477e-36
NC_003272.1\|WP_049942394.1\|1980941_1982699_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.72065e-142
NC_003272.1\|WP_010995816.1\|1956110_1959074_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	0
NC_003272.1\|WP_010995819.1\|1969134_1969392_-\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	6.37096e-13
NC_003272.1\|WP_010995833.1\|1985456_1985744_-\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	1.353e-25

>NC_003272.1|WP_010995823.1|1974359_1975343_+|PEP-CTERM-sorting-domain-containing-protein
MRTQYLSILLGMTVTATANMISAAPVRAASLTCETGNFFDYSSVKFVKTRPLSSNNCLRLFGERVGATDPDPQGFVAYGFGHIEMSLNSPNNPAPYYAAGIDFSPENLPGARQAATLLDDITGFGNFATFLTENNITTDRIGFSFGAKDRDFTKTWNLGEDINGQNYFSSPTSTLEERIYSANPDEVESFLVLDGNKFVTFGYSDIYSFLEYGATRAPDDDTEAIISNPFSAFKVAGLNGLSYGLADAFLADVRGNKIQLVSEDAGVVPDFVSVSDPFGPLDPIVSIRFPVQLRIVDVPEPSITIGFLGLGLLAFGSRLKNKNRHRC
>NC_003272.1|WP_010995822.1|1973155_1974103_+|PEP-CTERM-sorting-domain-containing-protein
MRTFLIGLLGLASATVLTIPQAAQAQTFDFDRLEFIESRPLPANGSLFFFGDQNQNEGYAAYSNLDRNAPDAGHVGFRSDLNNRYYVTGRENSPDPTGATRSATLESLANFPNLMNYLNNNGIPLSDIGYGFGQKPGFSVTQSLNLGADVLGQDWFGRPGSPVEESIYRARPESFERYLTYQTTKIIKFGYSDTFFASADDNPDSVFGNPNIFFSNPVSPSKAPGLEGLGSGIADAFLQDVVAGGGKIQEFSEDILDPEDLAVSVNGGFEIYTFSFPIEIRIVREVPESSSILGLMFLAGGGVVTQIKRHKRSVR
>NC_003272.1|WP_010995821.1|1972328_1973108_+|PEP-CTERM-sorting-domain-containing-protein
MLKKINATFSGLLSIITAATATVTILSSSVKAADFRPYRFVSGQESIRLDADALNSLKAIGLNLSVVDNVVPPAEGFDFGWPVLPPATNPGDRGTSFEFLYDEETDTFVPISGTIEFNGSLFFDFDPTKFSVASPLQLGELSVFFNENYEFFAIDTVTTNLPIMTVNTFEAPTIDLKNRTWFLEPIELVFTTEFSNFLINAAITPESANEVASLIPGLKIGEARGDRGFIPLDTASVPEPSILLAMFVVTGTVLVARKK
>NC_003272.1|WP_010995820.1|1969529_1970363_-|helix-turn-helix-domain-containing-protein
MFSNQNISSTNTYSQSSLSEPVSLIQHLINQVKEAIFCLDYQGHFHYINDAACSLLGHSRQKLLNMTIDEVEMDFLPSSWSYYWQLLKQQTSLTFKKVCSSQEYQSIEVTIKSLEHGSEVLGCILAHTFSTKNPDISSDQGLYLDEKNQPVHPSNKSLSSADFYPNCVQIRPIFEFIEQNYHLPISLNDVAQAVGYSPAYLTNLVKRRTQLTIIDWILERKMLEARSLLINSDKSVTEIAMAVGFTDAYYFSRRFSQYHKLSPRSWRQKYQSLQTMN
>NC_003272.1|WP_010995819.1|1969134_1969392_-|acyl-carrier-protein
MKTIQPCSVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGELYL
>NC_003272.1|WP_010995818.1|1964097_1968810_-|type-I-polyketide-synthase
MEPIAIIGIGCRFPGADSPQAFWQLLSNGVDAITEIPAERWNIDEFYDRNPETPGKMNARYGGFLSQVDRFDPHFFGISPREALLMDPQQRLLLEVAWEALEDAGIVREQLTGSKTGVFVGISTNDYSRIHPEFDSNPQGYDLTGNCINIAAGRLSYLFNLRGPSLAVDTACSSSLVAVHLACQSIWNQESSMAIASGVNLVLSPIGNIALSKLKALSPDGRCKTFDESANGYVRSEGAGCIILKPIAQALADHDPIYAVIRGSAINHDGRSKGLTVPYGPAQESLIRQALQQAQVQPKEISYVELHGTGTPLGDPIEAMAIGAVLGEGRDAAHPCLVGAVKSNIGHLEAAAGIASIIKMALALKYQQIPPSLHFHQPNPYIPFDQLPLRVQTSLIPWPKSKYGAKAGVSSFGFSGTNAHVILEGVSSFNSPEQQTCKFPHLLPLSAHTPAAVQTLALGYQDLINAQKLTPEFVQNLCYSASVRRTHQSYRSAVVVNSPEDLPSCLQALATADITTQTKQSKRKPKVAFVFSGQGPQWWAMGRELLAQEPVFRAVIEECDALIQKYAQWSLLTEFAVPESQSRFQETEIAQPALFALQVGLAHLWRSWGIEPKAVVGHSLGEVAAAHIAGVLSLEDAVHLICHRGRLMQQATGNGKMLAVELPATEVEPLLTAWAGQLEIAAINSPTATVISGQSQALQIFVTQLQQQHPDIFYKELPVNYAFHSQQMAPFAEALVEKLSHIQPQAGSLAVFSTVTGDKQAGEKFNADYWGQNLRHTVCFAPALTALIQSGYTQFVEISPHPVLSGYINACLRKQEVDGVILPSLKRGFGERATLLKSLGTLYTLGHSINWQSLYPDGCQMVDLPLYPWQRESYWVSESQPQFQKALPASSLLNLLVAGKTEQLTQELSNHHQLSPEAKQFIPQLLQLLATGKSTAKITQDLSNARYRIEWQLSPLTVDNKTSEAERWLIFSDNQGLGQELAAVVNDSCILVSSGESYEKLSSSHYQINPHQAADFQQLLADISEPITKVVYLWSLDSSINLENSQPQCYSHLLYLVQALAKISSKIAPQLWIGTQQAQAVTPSCHQINVAQTPLWGMGQVIALEYPQLWGGLIDFGNQDVAATAIIAEMTAKTGEDRVAFRDGKRYVARLMPISAPLPAPQPLISDGSYLITGGLGALGLTLAEWLVQQGARHLVLTSRQGLLNQSEEKQQKIRALENQGATVKVVAADVSDYQQMSQLFAQIQLNSPKLRGIIHAAGVLNDCSIAQMDSETFTKVFQPKVTGAWNLHQLTQDLSLDFFVCFSSMSALLGSRGQLHYAAANSFLDGLVYHRQSLGLPGLSINWGPWAEGGMATQGYEVGLKRMGIEPLEPTAALQVLGGLLGSASMQTMVAAINWSAFGKIVAAKGRVAFLEALLTQESKDGSNGENFRQKLSAAPLHRRPALLTTQVQQEVAQVLGHSGSYVPEVEQGFFDMGMDSLMSVQFRHSLEALLAVSLPSTLVFECPSIGDVVSYLMREVFAWQLDADDSSAMESQASVVIENTIAQLEGLSTAETEALMEQEIAELQALLS
>NC_003272.1|WP_010995817.1|1959319_1964083_-|acyltransferase-domain-containing-protein
MQTQDLTPLQKAIIALKEARTKIESLERTQNEPIAIVGMGCRFPGDANNPEKFWELLRQGKDGITTVPPQRWDIDAYYDDDPDVPNKMYARYGGFINNVDQFDPQFFGITPREAIALDPQQRLLLEVSWEALENAGIAPQKLTGTQTGVFVGIGIDDYAKRQIKHHIPIDAYTGSGNAFCFAAGRLSYLLGLQGPSLAIDTACSTSLVTIHLACQSLRNGECNLALAGGVSLMLSPEVTLYLSKTRALSPDGRCKTFDRDANGYVRGEGCGMVVLKRLSSAVADGDHILAVIRGSAVNQDGASSGLTVPNGTAQQAVIRQALANAKVTPAQISYLEAHGTGTALGDPIEVRAIDGVFGKGRSPNHPLILGSVKTNIGHLEIAAGMASLLKVILSLQHQEIPPHLNFQELNPDLAASAKSLKIPTSIIPWQPTEQPRMAGISSFGLSGTNAHIIIEEPPQLTVTPAEVDRPLHVLMLSAKSEAALHTLATDWEHLLRNHPETNFADLAFSANTGRGSFNHRLAIIAQSTAQARQNLAAFNQKQPSLNVFSQEVEKGRQPKIAFLFTGQGSQYVGMGRQLYETQPTFRQALDECDRLLQPYLKESLLSVLYPQTPTANPLINQTAYTQTALFAIEYALCKLWQSWGIQPQGVLGHSVGEYVAACIAGVYTLQEGIELIAQRGQLMQALPQTGTMAAVFAPVETVARAIAPYANEVTIATINSPENVVISGVKAAIALVQADLTAQGIDVRPLQVSHAFHSPMMEPMLGEFKQVAAKINYQTPGIDWISSVTGAEITHSIDAEYWCQQIRDCVQFAPAMETLAQQGYDVLIEIGPHPVLTRLGKQTLSDPQILWLPSLHREQNNWQSLLQSVATLSVHGVRLDWSGFEQDYIRRRLTIPTYPFQRQRYWLAEAESTQPEVIPVAAISPETSTIVAATETLESQILSLVAKITGMNPQQLSLDATLEGGLGLDSIMMTQLMNGIIKFIPPGQRESFHQVFSLRDLMQISNLGELLKVLEPWQTVDLPATTAVDVVPSADIPAIDQTSDVVDILHSQLPLLVSYWSLNSNSLFTKVQIEGDFNLEIAQQSWQALIDRHPMLRARFHIPQGATSFADYQLQVLKNPTPPAIPLKDIRHLASEEQTQAIAQEVNYWLNYRWSLTQWPLHGFSVLQLSDSVYQLFLGNEHLIADGLSNHVIIREFLEIYRALIDQDTPDLPPAVSVADYQAQVRAMNAWQDVEEDRALAAYNNSQRHTAYLWNPQQKIRQQTPLFDNQKYILSAETTAKLITKTREWRVPMNTLLLGAFIQTVAKLDTTSEKIGIQIPTSGRVYPGVDASGVISSFAQNLALSFTPPQAQQDWQTFLTEIQQTVQQHIGSGLDRAQTRQMGVIFRDSFVLENGRIPDHSLSLIQGALKSNLYLPYTGQTHIHPNYGSLSVTEYQAGGMNASGTIDILQEIFDSRLHLFASYDGNTFDVKVIDSLMKSYLAHIEELATLPIEEQVSSALVSPIFINKDIGKNLRQVTSEICHWAIAESEMSDDLEADLGLDSLELIRLVTRLESVYGKNYRQALLNCRTLQEMVVVLSAESLAISA
>NC_003272.1|WP_010995816.1|1956110_1959074_-|non-ribosomal-peptide-synthetase
MTLTSEIPYYQIIQQAQLTPDAIAVLDETNPLTYQQLDRLSNQVATYLRTQGVAPNTRVGIMAERGARMMIGILGILKAGGSYIPLDPGYPTDRLRYILEHATIQTLLTEHQVSQQLVACVQEALPLQTVMFLDEGEPLGEIQSLTQITAETWQSLSDDALELCNSPDDLMVILYTSGSTGRPKGVMLNHRGYMNRLTWMQNTFSLQPGDRVAQRTSFCFDISVWEIFWTLMSGATICPVQREVVLNPWEFARWIQETQINVMHFVPSLFGEFISALENETWSFPQLRWLMFSGEALPMSFIQRWIDRHGLKTGLANLYGPTEASIDVTCHLITERPDERLTTQIPIGKAIDNVYVKVLDGGMQPVQPGNMGELWLGGVQLALGYLKDPEKTAQAFCPNPFTDIPGDYIYRTGDLVKELPDGTIEYHGRIDHQVKIRGFRIELGEIESVLTTHPDVREAAALAVDYGEGQKRLVACISGNKIKNRFLKEYLEQKLPHYMIPQRFLWLDSLPKNHNGKLDRKALVTQLTSDSPDSSPSLLPLLPLGPAQRWLVKYFEPPYQWLGYTRFLYHQSLNVDIFNQAVNHLVHRHAAFRTIFVQNQGQWQQHILNQTQSFVAEYWDGSQVSQEERNLKIEQYMEAVAKKIQIDSWPMTAAIVVKVSSNCYDITMIAHHMITDMLSATILFKELWSAYHQLLLGVAPTFPQAKSESYEHFVQLLVNEDNKGTFEHHLKYWQSQFPDAKSGFEIPIDHVKGVNIEASAEKECFRLSQQQTELLLNQGKSYYGSNVYLILLAPLYRLMANWSHRPGVVISHRSHGRDLGQGSTFMESMGNYAINFPVGITLGSSAIWQEIIQEISDRFQSLPMNGVTYDWIGDRLPEYLYPDSNLTPIRVNYLGNRSVPPSNLFEFIQTVRDCRLSLPDQKRTTLIEFFFLIVDGHLEITIEYSRNFHLATTIQSLGKQYLLLLEDLLTPVSIQSTTDAPTFLPLR
>NC_003272.1|WP_010995815.1|1951709_1955501_-|acyltransferase-domain-containing-protein
MDTQQKTLKNSALQQTPIAIIGMSALFAKAENLQQYWDNILARINGISEVPETAWSLKDYYDPDPSTPDKTYARAGGFLPEIDFDPLEFGLPPDTLEALDSANLLALVLAKQALKDAGYSEGKEFNRETTGVILGASGLWKSITPLTARLQYPVWEKVLKNSGLSAEQTEKIIEKMQAAFVPWTENSFPGMLPNVVAGRITNRLDLGGTNCVVDAACASSLSALKMAISELIEGRCDMMLTGGFDTDNSILNYMCFSKTPAFSKKDYLNPFDATSDGMMVGEGLGMLVIKRLADAERDGDRIYAVIKGIGTASDGRYKSIYAPRVEGQVRALRRAYEDAGFSPATLGLMEAHGTGTPAGDFCEFTALNQVLTENQAGKQQIALGSVKSQIGHTKAAAGAASLIKATLALHHKILPPTINVTQPNPKFKIEESPFYINTETRPWIQNGDIPRRAGVSSFGFGGTDYHVVLEEYTPTLPQGGDRIHSTAQSILLWADTPQQLSQKCQATLEQLQSDNGGEQYNQLQNHSKTALIPETSARVGFVATSLEEAQKLLKAAIKQLQIQPQAFAWEHPQGIYYRQTGLSLKGKVVALFPGQGSQYLNMGREISLNFPEIQQAYQALDQLMAQDNLPALSDVVFPIPAFSPETIKQQSQQLQRTENAQPAIGALSLGLYKILQKVGFKPDFVAGHSFGELTALWAAGVFSDEDYCYLIKARGQAMTIPQGSHDCDRGTMLAVSGDVAKIKQLIAGMTKVQIANYNAPEQVVLSGSKPEIAALEKVLSKQGYTVTPLTVSAAFHTPFVRHASQPFAEALNRVTFNTPQIPVYANMTGNAYPTEATAIRQLLEAHLLNAVQFAQEIENLYAQGGYCFVEIGPRQILTNLVKQTLGDRPHIAIALNPSRQKDSDVQLRQGVIQLRVMGLSLEDLDASPRKLPAQKSKSKGLSIKLNATNYISDKTKAAFEFAFKPEPVVQLASTPLDQVASDAATVVSDSPAQPLVASSNDEIAITPVSVMEESVSLGEIYHQSDYQLIISKDETNTMNNSTHNTVAYLFQQFYQHQKEMLQVHEQYVKTQSQSFQAFLQLLQQQEVLIPQGSTSAIAEQTVVVPAPVVELPQTPVASVVELPKTPVAPVVESPKVTPAPVAEPVHISHIANYLEPRYSAPTPQPTLVVTETASPAASESYISRALMEVVSDKTGYPTEMLELEMDLEADLGVDSIKRVEIMGTLHESFPQLPKLSPEELAEKRTLAQIVQYLAGQIMVAEKK
>NC_003272.1|WP_044522856.1|1950937_1951654_-|hypothetical-protein
MKLMSLPAPDFWNVPNTPYQTCLLTDDGSSTTTEVAQCLSDRGWQVIVLSFPNSLVPKRPILPATVHRVILTNLSEEHLQDQLAGIFQTYGLIGTFIHLHPISQYLYNQPDTLVNPDKAILKQVFLLAKHLKSSLTQAANQGRSSFLTLAHLDGEFGLSGQQDFSAVSGGLFGLTKTLNLEWPAVFCRSLDISPDLDAATTAQIILAELHDPNALIQEVGYTTKGRVTLTCELADLGV
>NC_003272.1|WP_010995825.1|1977238_1980343_+|efflux-RND-transporter-permease-subunit
MNNLFYQNVRLLILTVLAIAVWGLSSFFSLPRIEDPEITPRFAVITTSFPGAAPERVETLITDKLEQSLFEVEEINNIESTSRLGFSSITVELNETINDVDPVWSRVRAKINDTIPLLPSGAATPKFEQSKPKANALIVALTWDLESAPNYAILSRWAQELDDQLRLIGGTEKVEQFGTPQEEIAIEVNPKQLTNLGLTIQSVSQQILQSDAKVAAGQLRSNQSNLLLEINGELDSLDRLNRLSIQLGNSSNVVRLGDIAQIKKGILDPPRELALVKGRRAIAISAFVESEQRLDAWAAIANTTLNKFQQQLPNGVGLQILFDQSHYVEQRLNEVLMNLITGAVLVVGITLFMMGWKSSLIVGSALPLSVFMVFGSMKLLGVPLHQISVTGLIIALGLLIDNAIIVVDEVQIYLREGLTPKKAVATTVREIFSPLLASTFTSVLAFVPIATAPGGTGEFTGTIGVTVILALVSSLFLALTVIPALAGRLHYWKPTPASGSWWQVGFSHHHLGQLYSWSLDRTFSRPLLSIALSLILPLWGFISLANLEQQFFPPTDRGQFYVNFELPIQASLQQTQSQVTQARELMLRHPEIADVQWFIGKSAPPFYYNVIQNRENSPNYAQGLVQLQKNVKSGSLIRTLQQELDQAFPAAQIIVRQLEQGPPFDAPIELRVYGSDLDRLRELGDQLRAELAKTPNVIHTRANLTETLPKLALNLDEEQLRLAGLDKTAVARQLDTNLEGIVGGSIFEGTEELPVRVRSLESQRGNLGDIASSTLLSPENSNQSGNRVVPLSAVGNLEIVPDVVTISRRNGKRVNTVQGFIPAGMLAAQVQTDFQDRLTASNFTLPSGYSWDFGGEEGERGDALSNLISTVGVLMIMMIASLVLTFSSFRLASIILVVAILSMGLGLGSLALFNYPFGFTAILGMIGLMGVAVNDSIVVLSSLNHDPKARQGDRHAARKVVIRSTRHVIATTLTTIIGFTPLLLDASGFWPPLAITIVGGLGGATLIALYFVPSVYLLLQRSLTKESRKNNLNN
>NC_003272.1|WP_049942394.1|1980941_1982699_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MKNIDLGRNDTRIKAKFPFSRLFLLLTLISVPGVASAQSTPPAGVTIPPTTPETIDQTIPKSSPSPATPTPPSPTTTPILPVPPVPTPSDVNSPIGESFLVKKIEVLGATVLKNEIAKLIEPFEKRQVTFADLIQLRSDITELYIQNGCITSGAFLPNNQNLTDGVVKIQVVEGELEKIEITGLRSLQSVYVRSRLAQATSTPLNRQRLEAALQLLQLDPVIQRVNAELSAGSTAGSNILLVNITEAPAFHGGVFTANNQTPSVGSTQLGVFLNHDNLLGFGDRLAAEYTITEGLNLYDVSYTIPLNGNNDTLSFRVNNANSRIITDDFRDLNIRSETQTYSLSYRHPLYRQPQTELGLSLGLDLRRSQTFLLENIPFSFSPGAEDGESKITAIRFSQDWVKRDATRVLAARSQFSIGIGAFDATVNDTDTDGRFFSWLGQFQWVQLLSSRTLILTRVNAQLTGDSLLSLEKFSIGGFDTVRGYTQNKLVADNGFTASIEVRLPLTANSNALQIAPFFDIGTVWNNRGGNPQPQTISSLGLGLLWQPSRDLNLRLDYGIPLTNINDGGNTLQENGIHFSLRYQPF
>NC_003272.1|WP_010995829.1|1982832_1983135_-|hypothetical-protein
METKKLHICKLEATQEWLCLDARAYIAECLEACVTVEMLADLREIFPRQALTVASVQVCELQRKRIQRWLKEQNGEVHDLGESSQVLQSAMDTSLGQCSS
>NC_003272.1|WP_010995830.1|1983277_1983514_+|hypothetical-protein
MITTKIIRQLWAVIESTNVSTLLQFDDISLVQLLTQQLKVNQGLDAQVDSSLDSYITSKLPLIRDTAEGRLSLGQENH
>NC_003272.1|WP_010995831.1|1983539_1983806_+|hypothetical-protein
MNHWLGIALVAYLIGAAIEGVSTAGQLAHSLPELTQDRQDESSKSTHTLKDNWRIVVAIASVTLCGACIWPCRLFHRLVKGNVSSEDS
>NC_003272.1|WP_010995832.1|1983933_1985424_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MKLRELLATVDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFWPSAIASGAIAAIVSPQAVEKNPPHDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLVGVTGTNGKTTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPEYLKGRAIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPEGNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQINPDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIVAELADLAFVTSDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARAALTEREKL
>NC_003272.1|WP_010995833.1|1985456_1985744_-|glutaredoxin-family-protein
MRLILYSKPGCHLCEGLQEKLEQIQNLSFELEIRDITTDENLFAAYQYEIPVLCLITPGDEKEQALPRPSPRASVQQLAQMLSKYLANPEKNNAE
>NC_003272.1|WP_010995834.1|1986106_1987522_+|ATPase
MNDSLHKDLSVYQLALGVEAPSQTVTLSPATLLSLVRAQIDLLIEQQLSATLWIKLPPGKVWSTEIVRYQSSVDNSGRIYNCQVGESKSEVGEENLTSLSCLYEHYFNVPLLPNNHLQREYFLVVLSTKFCSLIAAYRPRQNNKISPLGKTQNNKNQPLLTITSVEHQVIQRVLDGIKQEVTSELKPIAPSDLICPTACEPALISQMLTKQLQRQNEINRRISVERIAKLQQHNQKLQTKEQLKDEYLTNVCQELRTPLTQMKTALSLLNSPTLKPHQRQRYLQMLNTQCDRQSVLIAGLMTLVELEHNLETTTLEAVKLADIVPGVVSTYQPVAQEKGIMLGYTIPTDLPSVLCVNGGLRQIVINLLHNSLKFTANGGRVWVRAKVQGEYVILEIRDTGIGIAEGEIPKIFDCFYRVRSGLIDETNGAGLGLTIVQRLLWHCGGSVNVRSKVDEGTMVIVQMKIGTTSPT
>NC_003272.1|WP_010995835.1|1987790_1989254_+|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MPRKISLGLMALFISVQVSVTQQLVKAQTPTAPTPTTKSICPAELGTAIDTIVNRPLFNRVRWGILVKPLSSMQTLYSRDAEKYFTPASNAKLLTTAAALQQLGADFRIRTSIYQNGNGNFTIVGRGDPSLSDTQLQSLAQQLKQKGITQVNQLIADDSYIQGDIVNSTWQWEDVQSNYGAPVNSFILNQNVFGLKLIPQIVGKTPQLLWNDPNEARQWLIINQSVTVAANQPSYIDVSRDLTGKVLRIKGQIAANSTPYLVELPVVDPNYYFLRRFRSALSTEKISLGTTLVASSASNQQELAAVQSPPLSQLLIETNQNSNNLYAEALLRALAFKQPRVQNKSTANIGLDVIKVTLNKLGVDPTGYVLIDASGLSRRNLVTPEALVQTLQGIAKTPAANVYRASLPIAGKSGTLSNRLRNTPAQGIVQAKTGTLSGAISLSGYVNSSQYEPLAFSIMVNQSEQPASALRQAIDEIVVLLAQLKRC
>NC_003272.1|WP_010995837.1|1990620_1991904_+|glycosyltransferase-family-4-protein
MHILIYSYNYYPEPIGIAPLMTELAEGLVERGHQVRVITGMPNYPQREIYDGYKGKWYVTEQKNGVTIQRSYLRIKSKPKLIDRLLLELSFIFTSLPQAFNGERPDLILLTVPPLLVSLPATLLGLFYKCPVVLNVQDILPEAAVRVGLMTNKLMIRFCEIIEKFAYKNATKISVIADGFRENLINKGVSAKKILCIPNWVNVNFVRPLAKNNSWRTVHQLDGKFVVMYSGNIALTQGLETVIAAATYLRHIPDISFVIIGESTALSRLQKYCLSCGADNVLLLPLQPREQVPQMLATADVNLIVQKSNVIAFNMPSKIPLALASGRPIIGSVPATGTAAKVIKESGGGMIVEPESPEALAAAVLDIYNNSTLATKLGNQGRRFAEENFSFEQAIDQYEELFFELLGKTRPKITRLAPSQQKKSVKI

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Crispr_ID: NC_003272_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_11

2178258-2178438

Orphan

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_003272_11

>merge|NC_003272|11|2178258-2178438|CRISPRCasFinder
TGTTTCATCCCCGTGAGGGGAAGTGATTAAAAACCTTAATTTTCAAGGCTTGGTGGTTGAGCATCCTTTAGTGTTTTCATCCCCGCAGGGGGTAAGAGACTAAAAACATTTTTTCTATGTGTGGCACAGAAGGTTTGGAATGGAAGTTTCCATCCCCGCAAGGGGTAAGAGTTTAAAAACA

>NC_003272|11|10|2178258-2178438|CRISPRCasFinder
TGTTTCATCCCCGTGAGGGGAAGTGATTAAAAACC	TTAATTTTCAAGGCTTGGTGGTTGAGCATCCTTTAGT
GTTTTCATCCCCGCAGGGGGTAAGAGACTAAAAAC	ATTTTTTCTATGTGTGGCACAGAAGGTTTGGAATGGAA
GTTTCCATCCCCGCAAGGGGTAAGAGTTTAAAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995975.1\|2172168_2173023_-\|glycerophosphoryl-diester-phosphodiesterase-membrane-domain-containing-protein	unknown	unknown	gnl\|CDD\|370818
NC_003272.1\|WP_010995974.1\|2171315_2172101_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|224628
NC_003272.1\|WP_010995987.1\|2183274_2184951_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|225214
NC_003272.1\|WP_010995979.1\|2176666_2178169_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NC_003272.1\|WP_010995984.1\|2181763_2182411_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_003272.1\|WP_010995978.1\|2175578_2176607_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995991.1\|2189615_2190716_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_003272.1\|WP_010995990.1\|2188886_2189321_+\|DUF2809-domain-containing-protein	unknown	unknown	gnl\|CDD\|378530
NC_003272.1\|WP_010995976.1\|2173104_2174061_+\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|224219
NC_003272.1\|WP_010995989.1\|2188124_2188706_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_003272.1\|WP_044521075.1\|2170421_2171252_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NC_003272.1\|WP_010995972.1\|2165158_2169022_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_003272.1\|WP_044521078.1\|2179609_2179978_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_003272.1\|WP_049942403.1\|2181342_2181774_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995971.1\|2164273_2165116_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|215135
NC_003272.1\|WP_084789081.1\|2175324_2175570_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_044521081.1\|2179967_2180282_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995988.1\|2185026_2188056_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227328
NC_003272.1\|WP_010995977.1\|2174289_2174757_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_003272.1\|WP_010995982.1\|2180443_2181013_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995975.1\|2172168_2173023_-\|glycerophosphoryl-diester-phosphodiesterase-membrane-domain-containing-protein	gnl\|CDD\|370818	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase. Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase.	0.00364954
NC_003272.1\|WP_010995974.1\|2171315_2172101_-\|RDD-family-protein	gnl\|CDD\|224628	COG1714, COG1714, Predicted membrane protein/domain [Function unknown].	3.66671e-24
NC_003272.1\|WP_010995987.1\|2183274_2184951_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	1.51955e-50
NC_003272.1\|WP_010995979.1\|2176666_2178169_-\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NC_003272.1\|WP_010995984.1\|2181763_2182411_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	6.53981e-43
NC_003272.1\|WP_010995991.1\|2189615_2190716_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	6.82044e-167
NC_003272.1\|WP_010995990.1\|2188886_2189321_+\|DUF2809-domain-containing-protein	gnl\|CDD\|378530	pfam10990, DUF2809, Protein of unknown function (DUF2809). Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.	1.30394e-22
NC_003272.1\|WP_010995976.1\|2173104_2174061_+\|stage-II-sporulation-protein-M	gnl\|CDD\|224219	COG1300, SpoIIM, Uncharacterized membrane protein [Function unknown].	1.26529e-57
NC_003272.1\|WP_010995989.1\|2188124_2188706_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	2.3904e-44
NC_003272.1\|WP_044521075.1\|2170421_2171252_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	2.7399e-63
NC_003272.1\|WP_010995972.1\|2165158_2169022_-\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.85431e-53
NC_003272.1\|WP_044521078.1\|2179609_2179978_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.49679e-16
NC_003272.1\|WP_010995971.1\|2164273_2165116_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|215135	PLN02244, PLN02244, tocopherol O-methyltransferase.	9.78692e-136
NC_003272.1\|WP_010995988.1\|2185026_2188056_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	1.51518e-140
NC_003272.1\|WP_010995977.1\|2174289_2174757_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	3.86781e-35

>NC_003272.1|WP_010995979.1|2176666_2178169_-|glycerol-kinase-GlpK
MQISSSGYILALDLGTTGNRAFIFNNAGKIVAQAYKELTQHYPQPGWLEHDAEEIWQDTCWVMKTAIVNAQISPSEIAAIGLTVQRETCLLWDKTTGRPLHKAIVWQDRRTAPLCHQLQEKGYAQEIYSRTGLVVDAYFSATKLRWLLDYITGVDLKNVLAGTIDTWILWKLTGGKVHATDHSNASRTMLMNLKTGEWDEQLLEILQIPAHILPQIQPSLGKFGVTDTSLLDAAIPITAILGDQQAALFGHGCDRPGLMKCTYGTGSFLVAHTGSNIVRSQHQLISTIAWTQADKQENINIGYALEGSMFTSGACIQWLRDGIKLIKTAAETETMANQVADNGGVYFVPAFSGLGAPYWDMNARGAFFGITASVQPQHLVRAVLEAIAYQVLEVVQAINASCSSPMQRLIVDGGACENNFLMQFQADVLGIPVERPTMRDTTVQGAAFAAGLAVGFWDSYTALVNQRQIDRIFEPGEGSQNATANFAIWQKAVKRSLDWV
>NC_003272.1|WP_010995978.1|2175578_2176607_+|hypothetical-protein
MINSQLQLDPPPQDFVSPLLELRDYYARLVEEYETLFTQARSQLDHVEALLSTWSPSAEKKEQISIGDISPDVSTSFPKKSLPSATNGISPTEVNLVESKEVESQNSGSLEIESFVNTDEDNNESPEPSSSPTIEITPETIKGTDIPMLPEYQSLTRMEAIKKLLEEHLGAVCHIDFIVRSLYGELESYIFRVVKGRVQSSLTQGRERQAWFGIPDEPGCYTLDLGLVSSNRTHTYSQNGRSKKKKPVIIPKTKVVPMLEPFEGQFLIDALSVFFKQHPGKVFSVAQVISGLYGELDEEDTREVKGKVLNELSRGYRTGRFARLPNKVGFYTLDLKLAAKSG
>NC_003272.1|WP_084789081.1|2175324_2175570_+|hypothetical-protein
MTSKLIDVREYTVRAHKRLIHTRVFNFVCKECNEATKRETFGPRPLYCEICRPPQAPKKSQQPTRKAKPRPTIYKSDTDLG
>NC_003272.1|WP_010995977.1|2174289_2174757_+|Hsp20/alpha-crystallin-family-protein
MAITRWEPFREIERLEPFREMDTLQRQINRLFDRLMPTDGAEKVGFAFVPAAELEEKDDAIHLKLEVPGLEATDIHVEATPESISITGERKSETKTEENGITRSEFRYGKFQRVIPLPSLIQNDKVQAEYKNGILRLTVPKAESERNKVVKVNIG
>NC_003272.1|WP_010995976.1|2173104_2174061_+|stage-II-sporulation-protein-M
MNIQRWIARRELNWQRLDALLRQVETKGLKSLPATEIRELASLYRSVAADLARAQTQQVGNILIHNLQSLTTRGYTQIYQGSRRQEWQAVVEFYRWELPAVIQRTFAYTATATALFFLGLIVAWWYAWQDPTFMSLIVPERLISQVRDEHKLWMGSIVGIEPLASSGIMINNLKVSFGAVAGGMTAGAFTTYVMVFNGLLIGAIGTLVGQNNLAYPFWAFVFPHGALELPAIFFAGGAGLLIARAILFPGEYRRGDALKFYGSQAVQLLFGIVPMLVIAGIIEGFFSPNPRIPDPLKYLFGTGLFIIFFMYCNRKKHQ
>NC_003272.1|WP_010995975.1|2172168_2173023_-|glycerophosphoryl-diester-phosphodiesterase-membrane-domain-containing-protein
MAGNFGSPSPTQPLSVGNVVSAGLRLYRSHLKDYFLLALKAYVWVLVPVYGWAKFYALTSLISRLAFGELVNQPESISSGERFVNSRLWQFLLAMLLLLLVGIGIGLGVVILSILLGVVSAAFVGGVGQQANPATYLVFILAAFVIGIVALLGILWLVTRFYLVDLPLAVEEGIEATSAISRSWELTQGHVWRILLISFVGFLITIPIQIVVQIATSILQAAFLPLISEGNTVFALLYFVLVLVLISGSGALLIPFWQSIKAVIYYDLRSRREGLGLQLRDREI
>NC_003272.1|WP_010995974.1|2171315_2172101_-|RDD-family-protein
MHLFNRVKYRTPESVEIEFTVAGIGNRAWALIIDYLILAATWVVFFLVWAFISAQLVDWWTETFGSATAVWLVAIAFIVSFVMYTGYFVFFETLWQGQTPGKRSVKIRVVRDDGRPVGLQQATLRALLRPFDEFLFIGAFLIIFNSKEKRLGDLAAGTIVIQTETPTTSATFTISEQAKSLYAELSQITDLSKLLPDDFAVIHQYLQRRSVMGNKARSALSIKLAEQVQAILHLETLPATVTSDVFLEAVYLAYRGVGSGE
>NC_003272.1|WP_044521075.1|2170421_2171252_+|phytoene/squalene-synthase-family-protein
MDLRSDALQILKETSRTFYIPISILPPGLQEAVASAYLCMRAIDEIEDHPTLDNPTKAKLLRGISLTLQAGVDGFPVDAFAAGFSGYENTLEEVTMRIREWSLLAPETIAPRIWDATAAMSDRMAYWAENNWKIHTESDLDRYTFGVAGAVGLLLSDLWAWYDGTQTNRTLAIGFGRGLQAVNILRNHVEDLGRGVSFFPDGWDANNMQEYALRNLALADAYTQALPDGPALNFCQIPLTLAHGTIDAIANGKEKLSRSDVMALLEQIITFNLKAG
>NC_003272.1|WP_010995972.1|2165158_2169022_-|PAS-domain-S-box-protein
MLEFNHLRLHNMHGSLVAKIASAIATLVSSSILIGWLLDIQLLKTFFWSSSAIMKPNTALCFTLCGISAWLLVTKPLGEPHFSQRHKPYKKLSRAFSVSTTIIAGLKICEYLFGWELGIDKLLLGDVLTTINTPYPGRMGLNTAINFLLIGIALELLIYPRNHRSYWYAQMLVLFTTVISLQVVVSYAYKVKFSYTINPNITSMSLQTALLFIVLCIGILSGRAEKGLMKIVFSDSYGGLIARRLLVAAIAVPLFLGWLILEGQRAGRYGPAFAVSVFAVILIVIFAIIIWQNAVVIELLSQQRDRAQETLKAYEEKLASLVDANIIGIIFSDIYGGIQQANEAFLMMVGYSQEDLLTGRLNWKNITPPEYIYLDEQGIAEAQVNPKGACTPYEKEYIHQDGSRIPVLIGYVLLGEKREESVAFILDLSERQQAQQKILQLNKDLQRRVVELQTLLDVIPIGIGIAEDPECQHIKINPAFAKQLQLSTDVNASLSAPPDQRPTTFKVFHEGRELLPAELPMQYSAAHGAEVLDYEVDIVHDNGEIIKLLEYVAPLFDEDGNTRGCIGAFVDITERKQAEELLRNEQKWLEDVLNLMPRPLLFIEPETARVTFANRAADELAGGEFPRGVAAEEYHTVYHFTDINGNPVPNEQMPGVRVARGERLEGLELDWHTNDEVLSLLIFADTLPAMHGYPATCVVVFQNITQIKQAEKALSLGYQRLKLLFSTANDLLSSQEPVALIDSCFQKLAQQIGLDVYLNYLVEDNPQSMRLASYRGICPELAQEIEFLRFGEAVCGTTAQERHSIALENVQQSTDPKTQLIRSVGINAYYSYPLIAQGRLLGTLSFGSRSRANFTDNQKGMMQAVCDQIAIAMERVELINSLQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQARRLSEAQTAKGLETIERNAKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETAIENINLAAQAKEIDLTFFLENPATENLPFQVSGDSERLQQVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQIQVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGEEQGSTFTVKLPLLSENKATSIEPISPRGENLTPLPLCPSLLGVRVLVVDDESDSRDFISTVLEQCQAQVRAVATAKEALQIISQWKPDVLVSDIGMPEEDGYSLIRKLRSLPPEQGGNIPATALTAYARAEDRTRAIQEGFQLHLPKPIEPTELATVVASLIKRGQ
>NC_003272.1|WP_010995971.1|2164273_2165116_+|methyltransferase-domain-containing-protein
MSATLYQQIQQFYDASSGLWEEIWGEHMHHGYYGADGTEQKNRRQAQIDLIEELLTWAGVQTAENILDVGCGIGGSSLYLAGKLNAKATGITLSPVQAARATERAKEAGLSGRSQFLVANAQAMPFDDNSFDLVWSLESGEHMPDKTKFLQECYRVLKPGGKLIMVTWCHRPTDKTPLTADEKKHLEDIYRVYCLPYVISLPEYEAIARQLPLNNIRTADWSQSVAQFWNIVIDSAFTPQAIFGLLRAGWTTIQGALSLGLMRRGYERGLIRFGLLCGDK
>NC_003272.1|WP_044521078.1|2179609_2179978_-|pentapeptide-repeat-containing-protein
MDAEAIKRRYAAGERYFPAANLIRAKLIGVYLPGINLWGADLSGANLAKAKLWGADLSQANLANANLTRANLCGVKLNQANLRGAKLNLSKLYGADLTGAYYDETTKFSRGFDPVSRNMRQF
>NC_003272.1|WP_044521081.1|2179967_2180282_-|hypothetical-protein
MNTEEFLRLMEKQRSCPQTLPKALQALWYDKQGDWNQAHEIVQNASDVDSAWVHGYLHRKEGDLNNARYWYQRSSQPEFVGELNQEWEQITSFLLKKVNAIHGC
>NC_003272.1|WP_010995982.1|2180443_2181013_-|hypothetical-protein
MRILAATVVLTSSLLMTGFIHTSALANNAMTLSQSTPKLQPNKAQPINISKAEFGVAVRDAGGKFNFTPTIRVPLEEGSKYGWRIQIQDVKGQVTWREVLRLPKPPETWATDNGENFTLSADGTEAVTKRTQLPKDGVIENFWTIAPGDPPGKHIIYVYVDDHLVGNFEFEIVPKGNREVKGREQLGKI
>NC_003272.1|WP_049942403.1|2181342_2181774_+|hypothetical-protein
MKAFSIIAIIVVSVLSYVPSEVMGEIPPAIALPQNGNINQENLPETIIERHEAAALTTEPVTINSQWNSVTKQPQNLQETSIPLEQKKGCESLSPFDLLNNPDALFKECVNPADNRTPQRVEPVEYLKVPGLDSGVKVNVTKF
>NC_003272.1|WP_010995984.1|2181763_2182411_-|YdcF-family-protein
MVCCLCSTLDITNFMLKNVPKKWLFRILITIISALLFAISSTAISIYSYGSNSYNNKADAAIVLGAAVWGEEPSPVFRERINHAINLYKNGAISKIIFTGGVGEINELAEAIVGRNYAIARGVKAADVLTETQSRTTYQNLKNAIEVVGTNEKPTKFLIISDPLHLKRAVLMARNLGIDAYPSPTPTTRYRSFNSQMEFLIRETYFYFIYLVFKI
>NC_003272.1|WP_010995987.1|2183274_2184951_+|S-layer-homology-domain-containing-protein
MFSSVRRSLAYTTLLALGMTAITANPLIVSKPASAQTPVPTETPSTTSSNFSDVSSDYWAQPFIQALAQRNIIAGFPDGTFRPNQAVSRAEFATLIQKAFNQQPVRQLSASGFTDVPASFWASQAIREAYETGFLSGYPGNVFRPNQQIPRVQAIVALSSGLNLTTTDTASGVLSNNYADASAIPDYAVNGVAAATQSNIVVNYPNVRELNPSTSLTRGEAAAFLYQALVRQGQVQPLPSNVAAANYIVGGSGTTGGTQGSNNIVALAASSNSFSTLTTLLRTAGLTDILEQPGPYTVFAPTNEAFAALPAGTLEQLQQPQNRELLVRILRYHVVPGQLTANQLSSGQLTTASDAPVNVRVDTANNQIAVNEARVVQANIQASNGVIHAINEVLIPPNLTGQQPQEGTPQAQNPGAVTPGRATRGGSSYIGVAGNIGLGGDTALSDSNFAVISKVGLTRNLSVRPSAVFGNDTVFLVPLTLDFTPRAVEPGVVQPFAVSPYVGAGVAIEASGDTDIGLLLTGGVDIPLGERFTVNGAVNAAFVDETDVGLLLGIGYNF
>NC_003272.1|WP_010995988.1|2185026_2188056_-|tetratricopeptide-repeat-protein
MRLPVIPLTLILTLASPSLAQAPTPTTEEQITQAVMLNSSGESLIYKDFFGVGELQAALENFQQALAIFKKYGAKAGEANSLVNIGYVYFRKAEYGKALEYFQSSLDIRRKIKDRQNEWIPLSYIGEVYVNLGQYPKALEYYQPALAIIKELKAANSKDSSYATSEKTLLADIGAVYFRMGQYTKALDFYQQTLAMQKADDDKIGGIQTLNNIGVVYVNLGNYKQALDAYQQGLADLQECCSNYTGTKAAIINNLASTNFSLGQYKKSLELAEESANIYSKINHDAEKATKQEIKLLYDYLGQNSQALQQVASRANVGDGFGKDSFQFQGRALNLNNIGQIYLSLGKYDQALKLYQQALNIYKENSYKPGIAVTLNNIAKVQSNSGKYPQALELNQQALTIYQEIGDRTGEGVTMSNLGQIHQKQGQQEKASGLYQQALAMHRQVSDKVSEAATLKLLGDTLSVQNQPQLAIAFYKQSVNLTESIRQSLRTIPADIQKSYTETVAERYRRLADLLLKQNRPSEAQQVLDLLKIQEANDFIGNRRSQSQMTTAVVNTGQRGVNTEPQPSQKLPLQPQEQQISQKYSAIQDQAIAFGQELTNLRQTPANARTAIQEKRIAELVKLEQTITAEFNKFTKTPAVVALVQQLSANSGQENLSLRQLNSLRDNLRQLNKKAVLLYPLVLDDRLELVLVTADAPPIHRPVPVKPAELNQVINEFRQAIVVPYKDSKIPANKLYNWLIKPIENDLKQANAQAIIYAPDSKLRYIPLAALYDGKNWLIEHYIINNITAASLTKLNNKPQASLPTLAAAFTKGDYKVAVGERQEVFSGLQFAKVEVDNLAKIIKGTKILLDNDFSPQVTIPQMNDYKIVHLATHGMLVSGDPESSFILFGNGDRVTLKDIENWSLSNVDLVVLSACQTGLGNQLGNGQEILGLGYQIQLTGAKASIASLWAVSDGGTQALMDSFYSVLKTGNLTKSEALRTAQLALLMGNNQFNHPYYWASFILIGNGL
>NC_003272.1|WP_010995989.1|2188124_2188706_+|Uma2-family-endonuclease
MIASPEPEYLTPEEYLQLEETSPIKHEYINGYAYAMAGATDAHVTVAGNLFALLRNHVRGSGCRVYIADMKARIESLNRYYYPDVMVTCDQRDQETPNHKRFPCLIVEVLSNSTEAFDRGDKFVDYQEIETLKEYVLINTKRQRVECFKRGDNGLWILQNYTEQDKMFRLNSIGFEGAIAELYEDVTFEQTTV
>NC_003272.1|WP_010995990.1|2188886_2189321_+|DUF2809-domain-containing-protein
MLRSWRITPRKSIVPKQFRNLKWLRFNRTSFTLFAILFAIVVIIALFFRDDWIRPLLGDVLIVMVIAYFVHAFIAVPLRKVAIGTLIFAYLIEFLQFLNLIDILGWRNSRLAHLTIGSTFDWRDLAAYTLGIAIILLTANRLKS
>NC_003272.1|WP_010995991.1|2189615_2190716_-|ABC-transporter-ATP-binding-protein
MAKVRLEDIKRRFNNVTAIEEISFEIPDGEFWVLVGPSGCGKSTILRTIAGLENATSGNLFIGDRLVNNIPARARDVAMVFQNYALYPHMTVAENIAFGLKMRKINPKIVQERVVDVARSLSLDHLLDRKPKQLSGGQQQRVALGRAIAREPQVFLLDEPLSNLDAQLRDDTRAELKQLHQQLGITTIYVTHDQVEAMTLADKIVVLSGGRIQQIGEPQGIYARPANQMVATFLGNPPMNILPATYQLAGFDINGQLLAIPAFLREKLQLRSAQRVNLGIRPEHISINSDAINDQSSGLLVDVKLVEPLGRETLVRVSLPDSTVLLSVQLSGNVRLHPGDRLSLQLDLNQLFIFDPQTGYKISPQD

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Crispr_ID: NC_003272_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_12

2178606-2179167

Orphan

Consensus_repeat	Method
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	PILER-CR
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	CRISPRCasFinder
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	CRT

7 spacers

The CRISPR arrays of NC_003272_12

>merge|NC_003272|12|2178606-2179167|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAACTCTGGATTATATTGTATGCAACGTAGGTTGCTCAATATATTTGTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAACTGTCTATGATAGGGCAAACAAGGCATAATATGTCTTTTATGTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAACAATTTTTTAGGTTGCCACAAAAGCAACCGAACAGTTAGGGTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAACTGAAAGCGCTCAGCGCCCGCTGGGTAGATCTGACTCGATCGTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAACAAGATGAAATCGACCAAGCGTGGAGCGCTGGTCAGCATACTGTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAACAAGTAGAAGAAGCTCGCAAAAAGGCTGCAACTGCTTCAAGTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAACTGCTGGAGCAATTCCAACTGGTTGGGCTGGTATGATATATAGTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC

>NC_003272|12|7|2178606-2179167|PILER-CR
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TCTGGATTATATTGTATGCAACGTAGGTTGCTCAATATATTT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGTCTATGATAGGGCAAACAAGGCATAATATGTCTTTTAT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AATTTTTTAGGTTGCCACAAAAGCAACCGAACAGTTAGG
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGAAAGCGCTCAGCGCCCGCTGGGTAGATCTGACTCGATC
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AAGATGAAATCGACCAAGCGTGGAGCGCTGGTCAGCATACT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AAGTAGAAGAAGCTCGCAAAAAGGCTGCAACTGCTTCAA
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGCTGGAGCAATTCCAACTGGTTGGGCTGGTATGATATATA
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC

>NC_003272|12|11|2178606-2179167|CRISPRCasFinder
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TCTGGATTATATTGTATGCAACGTAGGTTGCTCAATATATTT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGTCTATGATAGGGCAAACAAGGCATAATATGTCTTTTAT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AATTTTTTAGGTTGCCACAAAAGCAACCGAACAGTTAGG
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGAAAGCGCTCAGCGCCCGCTGGGTAGATCTGACTCGATC
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AAGATGAAATCGACCAAGCGTGGAGCGCTGGTCAGCATACT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AAGTAGAAGAAGCTCGCAAAAAGGCTGCAACTGCTTCAA
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGCTGGAGCAATTCCAACTGGTTGGGCTGGTATGATATATA
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC

>NC_003272|12|6|2178606-2179167|CRT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TCTGGATTATATTGTATGCAACGTAGGTTGCTCAATATATTT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGTCTATGATAGGGCAAACAAGGCATAATATGTCTTTTAT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AATTTTTTAGGTTGCCACAAAAGCAACCGAACAGTTAGG
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGAAAGCGCTCAGCGCCCGCTGGGTAGATCTGACTCGATC
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AAGATGAAATCGACCAAGCGTGGAGCGCTGGTCAGCATACT
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	AAGTAGAAGAAGCTCGCAAAAAGGCTGCAACTGCTTCAA
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC	TGCTGGAGCAATTCCAACTGGTTGGGCTGGTATGATATATA
GTTTCCATCCCCGTGAGGGGTAAGAGATTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995975.1\|2172168_2173023_-\|glycerophosphoryl-diester-phosphodiesterase-membrane-domain-containing-protein	unknown	unknown	gnl\|CDD\|370818
NC_003272.1\|WP_010995974.1\|2171315_2172101_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|224628
NC_003272.1\|WP_010995987.1\|2183274_2184951_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|225214
NC_003272.1\|WP_010995979.1\|2176666_2178169_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NC_003272.1\|WP_010995984.1\|2181763_2182411_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_003272.1\|WP_010995978.1\|2175578_2176607_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995991.1\|2189615_2190716_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_003272.1\|WP_010995990.1\|2188886_2189321_+\|DUF2809-domain-containing-protein	unknown	unknown	gnl\|CDD\|378530
NC_003272.1\|WP_010995976.1\|2173104_2174061_+\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|224219
NC_003272.1\|WP_010995989.1\|2188124_2188706_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_003272.1\|WP_044521075.1\|2170421_2171252_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NC_003272.1\|WP_010995972.1\|2165158_2169022_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_003272.1\|WP_044521078.1\|2179609_2179978_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_003272.1\|WP_049942403.1\|2181342_2181774_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995971.1\|2164273_2165116_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|215135
NC_003272.1\|WP_084789081.1\|2175324_2175570_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_044521081.1\|2179967_2180282_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010995988.1\|2185026_2188056_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227328
NC_003272.1\|WP_010995977.1\|2174289_2174757_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_003272.1\|WP_010995982.1\|2180443_2181013_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995975.1\|2172168_2173023_-\|glycerophosphoryl-diester-phosphodiesterase-membrane-domain-containing-protein	gnl\|CDD\|370818	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase. Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase.	0.00364954
NC_003272.1\|WP_010995974.1\|2171315_2172101_-\|RDD-family-protein	gnl\|CDD\|224628	COG1714, COG1714, Predicted membrane protein/domain [Function unknown].	3.66671e-24
NC_003272.1\|WP_010995987.1\|2183274_2184951_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	1.51955e-50
NC_003272.1\|WP_010995979.1\|2176666_2178169_-\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NC_003272.1\|WP_010995984.1\|2181763_2182411_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	6.53981e-43
NC_003272.1\|WP_010995991.1\|2189615_2190716_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	6.82044e-167
NC_003272.1\|WP_010995990.1\|2188886_2189321_+\|DUF2809-domain-containing-protein	gnl\|CDD\|378530	pfam10990, DUF2809, Protein of unknown function (DUF2809). Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.	1.30394e-22
NC_003272.1\|WP_010995976.1\|2173104_2174061_+\|stage-II-sporulation-protein-M	gnl\|CDD\|224219	COG1300, SpoIIM, Uncharacterized membrane protein [Function unknown].	1.26529e-57
NC_003272.1\|WP_010995989.1\|2188124_2188706_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	2.3904e-44
NC_003272.1\|WP_044521075.1\|2170421_2171252_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	2.7399e-63
NC_003272.1\|WP_010995972.1\|2165158_2169022_-\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.85431e-53
NC_003272.1\|WP_044521078.1\|2179609_2179978_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.49679e-16
NC_003272.1\|WP_010995971.1\|2164273_2165116_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|215135	PLN02244, PLN02244, tocopherol O-methyltransferase.	9.78692e-136
NC_003272.1\|WP_010995988.1\|2185026_2188056_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	1.51518e-140
NC_003272.1\|WP_010995977.1\|2174289_2174757_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	3.86781e-35

>NC_003272.1|WP_010995979.1|2176666_2178169_-|glycerol-kinase-GlpK
MQISSSGYILALDLGTTGNRAFIFNNAGKIVAQAYKELTQHYPQPGWLEHDAEEIWQDTCWVMKTAIVNAQISPSEIAAIGLTVQRETCLLWDKTTGRPLHKAIVWQDRRTAPLCHQLQEKGYAQEIYSRTGLVVDAYFSATKLRWLLDYITGVDLKNVLAGTIDTWILWKLTGGKVHATDHSNASRTMLMNLKTGEWDEQLLEILQIPAHILPQIQPSLGKFGVTDTSLLDAAIPITAILGDQQAALFGHGCDRPGLMKCTYGTGSFLVAHTGSNIVRSQHQLISTIAWTQADKQENINIGYALEGSMFTSGACIQWLRDGIKLIKTAAETETMANQVADNGGVYFVPAFSGLGAPYWDMNARGAFFGITASVQPQHLVRAVLEAIAYQVLEVVQAINASCSSPMQRLIVDGGACENNFLMQFQADVLGIPVERPTMRDTTVQGAAFAAGLAVGFWDSYTALVNQRQIDRIFEPGEGSQNATANFAIWQKAVKRSLDWV
>NC_003272.1|WP_010995978.1|2175578_2176607_+|hypothetical-protein
MINSQLQLDPPPQDFVSPLLELRDYYARLVEEYETLFTQARSQLDHVEALLSTWSPSAEKKEQISIGDISPDVSTSFPKKSLPSATNGISPTEVNLVESKEVESQNSGSLEIESFVNTDEDNNESPEPSSSPTIEITPETIKGTDIPMLPEYQSLTRMEAIKKLLEEHLGAVCHIDFIVRSLYGELESYIFRVVKGRVQSSLTQGRERQAWFGIPDEPGCYTLDLGLVSSNRTHTYSQNGRSKKKKPVIIPKTKVVPMLEPFEGQFLIDALSVFFKQHPGKVFSVAQVISGLYGELDEEDTREVKGKVLNELSRGYRTGRFARLPNKVGFYTLDLKLAAKSG
>NC_003272.1|WP_084789081.1|2175324_2175570_+|hypothetical-protein
MTSKLIDVREYTVRAHKRLIHTRVFNFVCKECNEATKRETFGPRPLYCEICRPPQAPKKSQQPTRKAKPRPTIYKSDTDLG
>NC_003272.1|WP_010995977.1|2174289_2174757_+|Hsp20/alpha-crystallin-family-protein
MAITRWEPFREIERLEPFREMDTLQRQINRLFDRLMPTDGAEKVGFAFVPAAELEEKDDAIHLKLEVPGLEATDIHVEATPESISITGERKSETKTEENGITRSEFRYGKFQRVIPLPSLIQNDKVQAEYKNGILRLTVPKAESERNKVVKVNIG
>NC_003272.1|WP_010995976.1|2173104_2174061_+|stage-II-sporulation-protein-M
MNIQRWIARRELNWQRLDALLRQVETKGLKSLPATEIRELASLYRSVAADLARAQTQQVGNILIHNLQSLTTRGYTQIYQGSRRQEWQAVVEFYRWELPAVIQRTFAYTATATALFFLGLIVAWWYAWQDPTFMSLIVPERLISQVRDEHKLWMGSIVGIEPLASSGIMINNLKVSFGAVAGGMTAGAFTTYVMVFNGLLIGAIGTLVGQNNLAYPFWAFVFPHGALELPAIFFAGGAGLLIARAILFPGEYRRGDALKFYGSQAVQLLFGIVPMLVIAGIIEGFFSPNPRIPDPLKYLFGTGLFIIFFMYCNRKKHQ
>NC_003272.1|WP_010995975.1|2172168_2173023_-|glycerophosphoryl-diester-phosphodiesterase-membrane-domain-containing-protein
MAGNFGSPSPTQPLSVGNVVSAGLRLYRSHLKDYFLLALKAYVWVLVPVYGWAKFYALTSLISRLAFGELVNQPESISSGERFVNSRLWQFLLAMLLLLLVGIGIGLGVVILSILLGVVSAAFVGGVGQQANPATYLVFILAAFVIGIVALLGILWLVTRFYLVDLPLAVEEGIEATSAISRSWELTQGHVWRILLISFVGFLITIPIQIVVQIATSILQAAFLPLISEGNTVFALLYFVLVLVLISGSGALLIPFWQSIKAVIYYDLRSRREGLGLQLRDREI
>NC_003272.1|WP_010995974.1|2171315_2172101_-|RDD-family-protein
MHLFNRVKYRTPESVEIEFTVAGIGNRAWALIIDYLILAATWVVFFLVWAFISAQLVDWWTETFGSATAVWLVAIAFIVSFVMYTGYFVFFETLWQGQTPGKRSVKIRVVRDDGRPVGLQQATLRALLRPFDEFLFIGAFLIIFNSKEKRLGDLAAGTIVIQTETPTTSATFTISEQAKSLYAELSQITDLSKLLPDDFAVIHQYLQRRSVMGNKARSALSIKLAEQVQAILHLETLPATVTSDVFLEAVYLAYRGVGSGE
>NC_003272.1|WP_044521075.1|2170421_2171252_+|phytoene/squalene-synthase-family-protein
MDLRSDALQILKETSRTFYIPISILPPGLQEAVASAYLCMRAIDEIEDHPTLDNPTKAKLLRGISLTLQAGVDGFPVDAFAAGFSGYENTLEEVTMRIREWSLLAPETIAPRIWDATAAMSDRMAYWAENNWKIHTESDLDRYTFGVAGAVGLLLSDLWAWYDGTQTNRTLAIGFGRGLQAVNILRNHVEDLGRGVSFFPDGWDANNMQEYALRNLALADAYTQALPDGPALNFCQIPLTLAHGTIDAIANGKEKLSRSDVMALLEQIITFNLKAG
>NC_003272.1|WP_010995972.1|2165158_2169022_-|PAS-domain-S-box-protein
MLEFNHLRLHNMHGSLVAKIASAIATLVSSSILIGWLLDIQLLKTFFWSSSAIMKPNTALCFTLCGISAWLLVTKPLGEPHFSQRHKPYKKLSRAFSVSTTIIAGLKICEYLFGWELGIDKLLLGDVLTTINTPYPGRMGLNTAINFLLIGIALELLIYPRNHRSYWYAQMLVLFTTVISLQVVVSYAYKVKFSYTINPNITSMSLQTALLFIVLCIGILSGRAEKGLMKIVFSDSYGGLIARRLLVAAIAVPLFLGWLILEGQRAGRYGPAFAVSVFAVILIVIFAIIIWQNAVVIELLSQQRDRAQETLKAYEEKLASLVDANIIGIIFSDIYGGIQQANEAFLMMVGYSQEDLLTGRLNWKNITPPEYIYLDEQGIAEAQVNPKGACTPYEKEYIHQDGSRIPVLIGYVLLGEKREESVAFILDLSERQQAQQKILQLNKDLQRRVVELQTLLDVIPIGIGIAEDPECQHIKINPAFAKQLQLSTDVNASLSAPPDQRPTTFKVFHEGRELLPAELPMQYSAAHGAEVLDYEVDIVHDNGEIIKLLEYVAPLFDEDGNTRGCIGAFVDITERKQAEELLRNEQKWLEDVLNLMPRPLLFIEPETARVTFANRAADELAGGEFPRGVAAEEYHTVYHFTDINGNPVPNEQMPGVRVARGERLEGLELDWHTNDEVLSLLIFADTLPAMHGYPATCVVVFQNITQIKQAEKALSLGYQRLKLLFSTANDLLSSQEPVALIDSCFQKLAQQIGLDVYLNYLVEDNPQSMRLASYRGICPELAQEIEFLRFGEAVCGTTAQERHSIALENVQQSTDPKTQLIRSVGINAYYSYPLIAQGRLLGTLSFGSRSRANFTDNQKGMMQAVCDQIAIAMERVELINSLQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQARRLSEAQTAKGLETIERNAKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETAIENINLAAQAKEIDLTFFLENPATENLPFQVSGDSERLQQVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQIQVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGEEQGSTFTVKLPLLSENKATSIEPISPRGENLTPLPLCPSLLGVRVLVVDDESDSRDFISTVLEQCQAQVRAVATAKEALQIISQWKPDVLVSDIGMPEEDGYSLIRKLRSLPPEQGGNIPATALTAYARAEDRTRAIQEGFQLHLPKPIEPTELATVVASLIKRGQ
>NC_003272.1|WP_010995971.1|2164273_2165116_+|methyltransferase-domain-containing-protein
MSATLYQQIQQFYDASSGLWEEIWGEHMHHGYYGADGTEQKNRRQAQIDLIEELLTWAGVQTAENILDVGCGIGGSSLYLAGKLNAKATGITLSPVQAARATERAKEAGLSGRSQFLVANAQAMPFDDNSFDLVWSLESGEHMPDKTKFLQECYRVLKPGGKLIMVTWCHRPTDKTPLTADEKKHLEDIYRVYCLPYVISLPEYEAIARQLPLNNIRTADWSQSVAQFWNIVIDSAFTPQAIFGLLRAGWTTIQGALSLGLMRRGYERGLIRFGLLCGDK
>NC_003272.1|WP_044521078.1|2179609_2179978_-|pentapeptide-repeat-containing-protein
MDAEAIKRRYAAGERYFPAANLIRAKLIGVYLPGINLWGADLSGANLAKAKLWGADLSQANLANANLTRANLCGVKLNQANLRGAKLNLSKLYGADLTGAYYDETTKFSRGFDPVSRNMRQF
>NC_003272.1|WP_044521081.1|2179967_2180282_-|hypothetical-protein
MNTEEFLRLMEKQRSCPQTLPKALQALWYDKQGDWNQAHEIVQNASDVDSAWVHGYLHRKEGDLNNARYWYQRSSQPEFVGELNQEWEQITSFLLKKVNAIHGC
>NC_003272.1|WP_010995982.1|2180443_2181013_-|hypothetical-protein
MRILAATVVLTSSLLMTGFIHTSALANNAMTLSQSTPKLQPNKAQPINISKAEFGVAVRDAGGKFNFTPTIRVPLEEGSKYGWRIQIQDVKGQVTWREVLRLPKPPETWATDNGENFTLSADGTEAVTKRTQLPKDGVIENFWTIAPGDPPGKHIIYVYVDDHLVGNFEFEIVPKGNREVKGREQLGKI
>NC_003272.1|WP_049942403.1|2181342_2181774_+|hypothetical-protein
MKAFSIIAIIVVSVLSYVPSEVMGEIPPAIALPQNGNINQENLPETIIERHEAAALTTEPVTINSQWNSVTKQPQNLQETSIPLEQKKGCESLSPFDLLNNPDALFKECVNPADNRTPQRVEPVEYLKVPGLDSGVKVNVTKF
>NC_003272.1|WP_010995984.1|2181763_2182411_-|YdcF-family-protein
MVCCLCSTLDITNFMLKNVPKKWLFRILITIISALLFAISSTAISIYSYGSNSYNNKADAAIVLGAAVWGEEPSPVFRERINHAINLYKNGAISKIIFTGGVGEINELAEAIVGRNYAIARGVKAADVLTETQSRTTYQNLKNAIEVVGTNEKPTKFLIISDPLHLKRAVLMARNLGIDAYPSPTPTTRYRSFNSQMEFLIRETYFYFIYLVFKI
>NC_003272.1|WP_010995987.1|2183274_2184951_+|S-layer-homology-domain-containing-protein
MFSSVRRSLAYTTLLALGMTAITANPLIVSKPASAQTPVPTETPSTTSSNFSDVSSDYWAQPFIQALAQRNIIAGFPDGTFRPNQAVSRAEFATLIQKAFNQQPVRQLSASGFTDVPASFWASQAIREAYETGFLSGYPGNVFRPNQQIPRVQAIVALSSGLNLTTTDTASGVLSNNYADASAIPDYAVNGVAAATQSNIVVNYPNVRELNPSTSLTRGEAAAFLYQALVRQGQVQPLPSNVAAANYIVGGSGTTGGTQGSNNIVALAASSNSFSTLTTLLRTAGLTDILEQPGPYTVFAPTNEAFAALPAGTLEQLQQPQNRELLVRILRYHVVPGQLTANQLSSGQLTTASDAPVNVRVDTANNQIAVNEARVVQANIQASNGVIHAINEVLIPPNLTGQQPQEGTPQAQNPGAVTPGRATRGGSSYIGVAGNIGLGGDTALSDSNFAVISKVGLTRNLSVRPSAVFGNDTVFLVPLTLDFTPRAVEPGVVQPFAVSPYVGAGVAIEASGDTDIGLLLTGGVDIPLGERFTVNGAVNAAFVDETDVGLLLGIGYNF
>NC_003272.1|WP_010995988.1|2185026_2188056_-|tetratricopeptide-repeat-protein
MRLPVIPLTLILTLASPSLAQAPTPTTEEQITQAVMLNSSGESLIYKDFFGVGELQAALENFQQALAIFKKYGAKAGEANSLVNIGYVYFRKAEYGKALEYFQSSLDIRRKIKDRQNEWIPLSYIGEVYVNLGQYPKALEYYQPALAIIKELKAANSKDSSYATSEKTLLADIGAVYFRMGQYTKALDFYQQTLAMQKADDDKIGGIQTLNNIGVVYVNLGNYKQALDAYQQGLADLQECCSNYTGTKAAIINNLASTNFSLGQYKKSLELAEESANIYSKINHDAEKATKQEIKLLYDYLGQNSQALQQVASRANVGDGFGKDSFQFQGRALNLNNIGQIYLSLGKYDQALKLYQQALNIYKENSYKPGIAVTLNNIAKVQSNSGKYPQALELNQQALTIYQEIGDRTGEGVTMSNLGQIHQKQGQQEKASGLYQQALAMHRQVSDKVSEAATLKLLGDTLSVQNQPQLAIAFYKQSVNLTESIRQSLRTIPADIQKSYTETVAERYRRLADLLLKQNRPSEAQQVLDLLKIQEANDFIGNRRSQSQMTTAVVNTGQRGVNTEPQPSQKLPLQPQEQQISQKYSAIQDQAIAFGQELTNLRQTPANARTAIQEKRIAELVKLEQTITAEFNKFTKTPAVVALVQQLSANSGQENLSLRQLNSLRDNLRQLNKKAVLLYPLVLDDRLELVLVTADAPPIHRPVPVKPAELNQVINEFRQAIVVPYKDSKIPANKLYNWLIKPIENDLKQANAQAIIYAPDSKLRYIPLAALYDGKNWLIEHYIINNITAASLTKLNNKPQASLPTLAAAFTKGDYKVAVGERQEVFSGLQFAKVEVDNLAKIIKGTKILLDNDFSPQVTIPQMNDYKIVHLATHGMLVSGDPESSFILFGNGDRVTLKDIENWSLSNVDLVVLSACQTGLGNQLGNGQEILGLGYQIQLTGAKASIASLWAVSDGGTQALMDSFYSVLKTGNLTKSEALRTAQLALLMGNNQFNHPYYWASFILIGNGL
>NC_003272.1|WP_010995989.1|2188124_2188706_+|Uma2-family-endonuclease
MIASPEPEYLTPEEYLQLEETSPIKHEYINGYAYAMAGATDAHVTVAGNLFALLRNHVRGSGCRVYIADMKARIESLNRYYYPDVMVTCDQRDQETPNHKRFPCLIVEVLSNSTEAFDRGDKFVDYQEIETLKEYVLINTKRQRVECFKRGDNGLWILQNYTEQDKMFRLNSIGFEGAIAELYEDVTFEQTTV
>NC_003272.1|WP_010995990.1|2188886_2189321_+|DUF2809-domain-containing-protein
MLRSWRITPRKSIVPKQFRNLKWLRFNRTSFTLFAILFAIVVIIALFFRDDWIRPLLGDVLIVMVIAYFVHAFIAVPLRKVAIGTLIFAYLIEFLQFLNLIDILGWRNSRLAHLTIGSTFDWRDLAAYTLGIAIILLTANRLKS
>NC_003272.1|WP_010995991.1|2189615_2190716_-|ABC-transporter-ATP-binding-protein
MAKVRLEDIKRRFNNVTAIEEISFEIPDGEFWVLVGPSGCGKSTILRTIAGLENATSGNLFIGDRLVNNIPARARDVAMVFQNYALYPHMTVAENIAFGLKMRKINPKIVQERVVDVARSLSLDHLLDRKPKQLSGGQQQRVALGRAIAREPQVFLLDEPLSNLDAQLRDDTRAELKQLHQQLGITTIYVTHDQVEAMTLADKIVVLSGGRIQQIGEPQGIYARPANQMVATFLGNPPMNILPATYQLAGFDINGQLLAIPAFLREKLQLRSAQRVNLGIRPEHISINSDAINDQSSGLLVDVKLVEPLGRETLVRVSLPDSTVLLSVQLSGNVRLHPGDRLSLQLDLNQLFIFDPQTGYKISPQD

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Crispr_ID: NC_003272_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_13

3274979-3275083

TypeV-U5

Consensus_repeat	Method
TCAGTTTTAAAGAATTATTGTCCAA	CRISPRCasFinder

1 spacers

c2c5_V-U5

The CRISPR arrays of NC_003272_13

>merge|NC_003272|13|3274979-3275083|CRISPRCasFinder
TCAGTTTTAAAGAATTATTGTCCAATTTTACCCTGTGAAGAGACATGAATTGCGTGTTTCCTTGACTTTCAGCAGTTAATTCAGTTTCAAAGAATTATTGTCCAA

>NC_003272|13|12|3274979-3275083|CRISPRCasFinder
TCAGTTTTAAAGAATTATTGTCCAA	TTTTACCCTGTGAAGAGACATGAATTGCGTGTTTCCTTGACTTTCAGCAGTTAAT
TCAGTTTCAAAGAATTATTGTCCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010995738.1\|3275412_3276306_+\|IS982-like-element-ISNsp1-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_003272.1\|WP_010996830.1\|3240066_3242670_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NC_003272.1\|WP_049942447.1\|3277623_3278901_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341153
NC_003272.1\|WP_010996841.1\|3277321_3277558_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010996820.1\|3285535_3286429_+\|IS982-like-element-ISNsp1-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_003272.1\|WP_010996829.1\|3238655_3239969_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_003272.1\|WP_044523045.1\|3252398_3259766_+\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|225858
NC_003272.1\|WP_010996836.1\|3259880_3267437_+\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|225858
NC_003272.1\|WP_010996837.1\|3267480_3268128_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319798
NC_003272.1\|WP_096637149.1\|3284235_3285029_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_003272.1\|WP_010996840.1\|3276935_3277325_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|226267
NC_003272.1\|WP_010996833.1\|3247586_3248264_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223831
NC_003272.1\|WP_010996834.1\|3248681_3252302_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341254
NC_003272.1\|WP_158303716.1\|3281937_3282084_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_158303715.1\|3281509_3281656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369567
NC_003272.1\|WP_010996838.1\|3268693_3274534_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_003272.1\|WP_044521438.1\|3244519_3247450_-\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NC_003272.1\|WP_010996839.1\|3276292_3276832_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NC_003272.1\|WP_126987613.1\|3242897_3244259_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_003272.1\|WP_010996846.1\|3282085_3284110_+\|type-V-CRISPR-associated-protein-Cas12k	c2c5_V-U5	-	unknown

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010995738.1\|3275412_3276306_+\|IS982-like-element-ISNsp1-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.74296e-27
NC_003272.1\|WP_010996830.1\|3240066_3242670_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.32822e-106
NC_003272.1\|WP_049942447.1\|3277623_3278901_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341153	cd17264, RMtype1_S_Eco3763I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli O69:H11 07-3763 S subunit (S.Eco3763I) TRD2-CR2. Escherichia coli O69:H11 07-3763 S subunit (S.Eco3763I) recognizes 5'... TACNNNNNNNRTRTC ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.65173e-54
NC_003272.1\|WP_010996820.1\|3285535_3286429_+\|IS982-like-element-ISNsp1-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.90489e-27
NC_003272.1\|WP_010996829.1\|3238655_3239969_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.65482e-52
NC_003272.1\|WP_044523045.1\|3252398_3259766_+\|type-I-polyketide-synthase	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_003272.1\|WP_010996836.1\|3259880_3267437_+\|type-I-polyketide-synthase	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_003272.1\|WP_010996837.1\|3267480_3268128_-\|HAD-family-hydrolase	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.93327e-98
NC_003272.1\|WP_096637149.1\|3284235_3285029_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.53792e-31
NC_003272.1\|WP_010996840.1\|3276935_3277325_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|226267	COG3744, COG3744, PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms].	1.04901e-45
NC_003272.1\|WP_010996833.1\|3247586_3248264_-\|peptidylprolyl-isomerase	gnl\|CDD\|223831	COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones].	5.72678e-15
NC_003272.1\|WP_010996834.1\|3248681_3252302_+\|AMP-binding-protein	gnl\|CDD\|341254	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.	0
NC_003272.1\|WP_158303715.1\|3281509_3281656_-\|hypothetical-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	1.2647e-06
NC_003272.1\|WP_010996838.1\|3268693_3274534_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_003272.1\|WP_044521438.1\|3244519_3247450_-\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NC_003272.1\|WP_010996839.1\|3276292_3276832_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.30239e-30
NC_003272.1\|WP_126987613.1\|3242897_3244259_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.0508e-54

>NC_003272.1|WP_010996838.1|3268693_3274534_+|AAA-family-ATPase
MLSIPGYRLDEELYNGSRTLVYRGYREIDSLPVVVKLLKNPYPSFNELIHFRNQYTITKNLHYPGIIQTYSLEPYKNGYALVMEDFGGVSLKDYFGKDHHVASLQEFLEIAIALCNTLDVLYRECIIHKDIKPANILINPETKQIKLIDFSIASLLPRETQIVINKNILEGTLAYISPEQTGRMNRGIDYRTDFYSLGVTFYELLTAELPFVSRDPMELIHSHIAKLPEKLRSGREREIPKVICDIVMKLMAKNAENRYQSALGLKFDLENCLNQLQETGKIQDFEIAQRDVCDRFLITDKLYGRDTEVEALLQAFERVSLGATEMMLIAGASGIGKTAVINEVHKPIVRQRGYFIKGKFDQFQRNIPLSAFVQAFRDLIAQLLTESDTQIQRWRNQILEAVGENGQIIIEVIPELSRIIGEQASVLEISGTAAQSRFNLLFQKFTQVFTTAEHPLVIFLDDLQWADSASLKLMQLLMADTGHLFLIGAYRDNEVSPVHPLMVTLNQIEKTATIINTITLSALTQRQINQLIADTFKCTEDLALPLSALIFQKTQGNPFFATQLLKQLYQDKLIDFNFQSGFWQCDIAKVKNQVVTDDVVEFMVAQLRRLPEATQKVLQLAACIGNQFDLATLAIVSEQSKIETAASLCKALQEGLILPLSEIYKFYQDSSLENTEHTAKNIEAQLAAFNVEEKTTIYKFLHDRVQQAASYLIPEEQKQLTHLKVGQLLLENTPLAQQSERIFEIVGQLNCAIPLITEQKKCQQLAQLNLNAGRKAKEAIAYSASLQYFNQGIELIISDGWKNAHDLTLNLYQDAAEAAFLNNEFEQMESLIEVVIQEAKNLLDKVKVHEIQLQSYQVQGQMLKAIKIGCKTLQELGIVLSEDITSHDINQAIENTLLILGNRQIESLIDLPMMIEPQALFALKIMISLTPSVHQAAPQLFPIIACEQVNLSLKYGNAALSAPGYADFAIVLNAVFNELDKGYEFGQLALKIVDKFAAKYVQSMTSFKVAAFNQINKLHIRDAINLLKESYSFGLEFGDFVHIIVATFFRLFYTYLTSSEKLDDLLKEIKMYEVNFASSQSFSIRFRMLRQSIEILTGVSHDSDLLMDEHWNEENILPILLQENDEFTFHEFYLIKLINSYLFNDSLTAVHYAEQGDSHLKGGAGMLSVSVFYYYDSLARLALYSQVEPSEQTRLLLRVDENQQHLKLRATVAPMNFQHKFDLVEAERHRALGQRFEAIDLYESAIAGAKANEYILEEALANELAAKFYLEWGKEKVAQAYMQEAYYCYFSWGAKAKTEDLEKRYPHLLQPILQQQRINFHPLETISWSGTSLSIHTSNADSTSISNMLDFSSILKAAQAISSSLKLDQLIANLTRIILENSGAKKSALILLQENTWQVKAITLINHEQIQPIFESQSLDTCQDIPVNIINYVKNTRQTVVIDNCKTDIPGLMGEYMQQIQPQSVLSTPIINQGRLVGVLYLENKLTQGVFTRDRLSVINFLCTQAAIALENAQLYNHLQEREQFLSSIYEGIGCLVFVIDVRDNGRLEYTGWSKSCELAIGIPTSEVLGKTPQELMAPDQGAAVEQKYLRCFQTGIPITYEECLTFNDQETWWLTTLSPLKDETDKVYRLVGTTINISEQQAALRERKQAEEAVTEKSQALETALEDLQQAQLQIVQSEKMSALGNLVAGVAHEMNNPLGFISATLKQTKPNFTDIIGHLQLYQELIENPGDEIQDHAEEIDLDYLLEDLPKTIDAMVMACDRLKNISTSLRTFSRADKDYKVPFNLHQGIDSTILILKHRFKANDKRPAIEVITEYGDLPLIECFPGQLNQVFMNILANAIDALDESNTGRSFADIQAKPNRILITTLMVDKCVNISISDNGKGMTKEVQEKIFDHLFTTKAVGKGTGLGLAIARQIVEETHNGKLSCHSILGEGTDFMIEIPV
>NC_003272.1|WP_010996837.1|3267480_3268128_-|HAD-family-hydrolase
MSTSVILFDLDGTLTDPKLGITRCIQFALSELGYKPPDADELNWCIGPPIKNTFSLLLNTSDDAVLEQAISLYRSRFATIGLFENSLYPQIPETLDAICFAGYKTFVATSKPQIYANQIIQHFGLSSLFDGVYGSELDGTRSVKSDLIHYILLTENFSPPHVVMVGDRLYDMIGAKRNGITAIGVTYGYGTEEELKAHGADLIVHTPDEITRLLI
>NC_003272.1|WP_010996836.1|3259880_3267437_+|type-I-polyketide-synthase
MTQDYRTLMQNALKQIQDLREKLKAQTEPIAIVGMGCRFPGGADTPEKLWQLLRNGDDGITEIPSDRWSIETFYHNNPATPGKMSTRYGGFIGHLKEFDADFFGIAPKEAISLDPQQRLLLEVTWEALENTGILPEQLTGSQTGVFIGISSNDYTTHLLNRPVTDIDAYLATGNSHSTAAGRISYILGFTGPSLAVDTACSSSLVAVHLACQSLRQGECQLAVVGGVNRIFSPEFTINFSQARMLAADGRCKTFDTKADGFVRGEGCGVIILQKLSDAQAARNPILAVIRGSAVNQDGRSSGLTVPNGPAQQAVIRQALKNATVEPSDITYVEAHGTGTALGDPIEIGALGAVFGESHQTSPLLVGSLKTNIGHLEAAAGIAGLMKVVLALKHGEIPPHLHFQQPNPHIPWEQFPIQIPTTCTPWHGKKLAGVSSFGFSGTNAHVILAASEIQNQNKENTIKRPLQILNLSAKTETALKQLAQNYITYLKEHQDINLADICYSANTGRSSRGAASLTQFEHRLSIIANSITTAQEKLTCFINNEATTNLFTNKVNSPSRPKIAFLFTGQGSQYQNMGWELYQTEPFFKETIDKCCELLLANSGLDLHSVLFPQDNENNHKLLSQTLYTQPALFILEYALCQLWLSWGIKPDFFMGHSVGEYVAACIAGVFSLEDGLKLIATRARLMQQLPQGKMVAVAASPSQLQNFLLPYDQQVSIAAINAPNNTVISGEPAAIEKIIAVLVSQNIQATPLSVSHAFHSPMMETMLGEFEKIAATINFHPPKYPIISNVTGSLINSEIATPEYWCRHIRQPVQFLAGVETLIQQNCSIFLEVGAKPILLQMARSIISQADKYLWLPSLQPKQQDWQVMLSSIAAIYGRGVKIDWHKFEQNYHHQRLDLPNYPFQRQNFWIDIKPVNKNYYSSSPNNIHPLLGQQLNLAKSSDIYFEQQLTNNNPDYLQDHKVFNQIILPGAAYLEMSLAAAKTIFKNNSISVETVSFQETCILTPDNPKNIQFILKNNHEFEIVSTTSNHDWITHATGKIKPHNNIPQPQQINLGELQNTFTKIIDITDFYQNLTQVGIEYGETFQAITHIWYLDNQALAEIHLPSTCNCRDNYQFHPIILDACLQTIAAIFYSQPTPSNSSQDIENPSPNLSPKRREALNVPPSLVGKGVRGLGLNTTNQVYLPIGVDKLTIYLPIGETVWSLVKLRTQHKTAFALVADIQILSPSGQVIALVEGLQLKKIQSPNIKDWQNWLYEIEWRSQPLSITSDISLTSPAEISQELALKFTELLTTEEIKTYAQLLPQLEALSLYYIVQALQNLDVLSPEIAPQHQRLYTHLLSLITNQREYEKPQLSPTQHPEIAAELTLIERCGTNLGKVLQGKCNPIDLLFPNGDLTTLTQLYQNSPGAKVMNTLVQQAINSALKDLPPGEKVRILEIGAGTGGTTAYVLPQLVHQSVEYVFTDISPLFLAKARQQFSEYEFVSYQTLNIEQPLTNQDITPHSFDIVIAANVLHATENLNHTITNVKSLLNNQGLLIVLEGTIPSIWIDLIFGLTEGWWRFQDQDLRPHHPLISTTAWHSLLKTHDFTNIVNITPDSILPEALAQQSVIVAQNTPPQPSPYKREGEECLIITDLPAWGEAINQQLKLPSFTLKPSDNIAEFPHQSIKHIIYIAGCQDNITECNNILHLVQTLIKTQHYPINLWLVTQGAISPHTITGLNQSSVWGMGKVIRLEHPELNCRCVDLDPTQELFTQVENLVTEITHPGEEAQITLHKSERKVARLTRCTLQILPHEPYRLTIAKRGVIASLKWQSSPRRQPQPGEVEIQVKATGLNFIDVLDALGLLPFERNWFGVECAGEVVAIGEGVTHLNVGDAVVALAADSFSQYVTTNANYVIKKPDSLSFTAAATIPANFLTAAYALREVAKIQPGKRILIHAATGGTGMAALQIAQQAGLEVFATASVGKWETLRALGVQHIFNSRTLNFAEEIHEITQGEGVDIVFNSLSGEFIPASLSVLKPQGQFIEIGKRGVWNAQKVAQVKPDVVYHLVDLMSVAQQQPQTIQTLLHCLMAEFESGELRWSPTDRRSSHPQTIFPATKIVEALQMMQQARHIGKIVITHTPTESLQPDATYLITGGMGGLGLRVARWLVEKGAKHLVLLGRNQPDTTAQQQIQALEATGAKIIITQADVSQKDQLAAVLTDIQQNHPPLRGVIHAAGVLDDGILQQLTPERSHRVMNPKVTGAWNLHQLTQDIPLDYFIMFSSAASLLGSPGQANHVAANTFLDALAQYRRHQGLPALSINWGVWSDIGAAAKRQVSNQMSSRGIGEITPDQGIDILEFILTQSSTQVGVIPINWSELLKQKLSSTFFADFYESTPSTSQEYQPSQLIQHIQCLGIKERISYLRKYLQTEVSQVLGSSSSQLPNVQLGFFDMGMDSLMMVELRSRLETSLKQTIPSTVLFEHPSIQALAEYIATQLLPQETVISAINEQPDISSSDVSSKQEIETSITAELAALESLLT
>NC_003272.1|WP_044523045.1|3252398_3259766_+|type-I-polyketide-synthase
MTNSPNYQTLLKDALVEMRQLRAEITALEAQQTEPIAIIGMACRFPGGANNPEAFWQLLRDGVNAVGEIPDARWDIEKYYDANPDTPGKMYTRYGHFLDKVDEFDAQFFGISPREAQSLDPQQRLLLEVSYEALERAGQSPAKIKGSQTSIYIGLCFDDYAKHSLSHPTQIDAFSSLGNTRSIAAGRIAYVLGLQGTVMQLDTTCSSSLLGVHLACQSLRNGESDMALAGGVNLILSPEPMIGFCKLKALAVDGRCKTLDAAADGYGRGEGCGIVVLKKLRDAIANRDPILAVIRGSAVNHDGSSNGLTAPNGTAQEAVIHQALQNAQVEPHQIQYSELHGTGTVLGDPIEVLALAKVLGEGRSKNQPLSIGSVKTNIGHLEGAAGVAGLMKVILALQHQQIPAHVNFQQPNPYIPWQKLPLTVPTQLTPWQSANSQRLAGVSSFGMSGTNVHLILEEFTPVPNSQQDTGYQLLTISAKTPQALRELVGEYIKYFASQPEDNLDDICFTSNVGRSHFPYRLTIPANSYNSVYEQLSNYLNNTAKTFDSQLIPPNTLKIAFLFTGQGSQYLNMARELYDTHPYFRQQVDKCCELLHPYLDVDLREILFTPETPNSSNYELRITNYELSHTIYTQPALFVIEYALTQLWRHWGVTPDFLIGHSLGEYVAACIAGVFTLPDALKLIAHRARLMQQLPENGKMLAVSASATEIAEYIQAYSENVGIAAINSPENTVISGEQTAIAQLAEILQNQGIKTTPLSVSHAFHSPLMETMVEEFRQVAESITFHPPKTPIISNITGTVIGEEIANAEYWCHHILQPVQFALGIETLAKDNCKIFLEIGVKPTLLSIGKTCFPDAENYSWLPSLRPRQSDRQTILSSLASLYMQGIDINWENFTDNQPHQRVILPTYSFQRQRFWVDKPEFTPPYPTPNLHPLLGQKLKLAKSEKIYYQNKISPKKPDFLQQHQVQSNSIMPAAGYIEIAITAAEQIFPSHSYNLQNIQIIQPLPTTQEITLQLILTPLEKQTYQFEILSLCAFAPLREKETTHATGIIQTSPPLPNSPQLPTTCTQKIDPTTYYQTCQKLGIEYGKYFQAIQQLWRGENQALGEIKLSPEIDTTPYQIHPIILDACLQVTGAIFLDSQPLTAYLPIAIEQFQWYGEKHQTHLWSYVKLRERYIADIQIFNANNKLIATITGLKIQPVKQLNNWQDWLYSIAWKENPLTYHHLLTPTKVSNSSILNQSELDNYLSLSSQLEKLSIACILQTLQAGEELSIVTQHKKLYQYLLQILQNQEQRETPLSFTQLRQTYPNATSELNLLKRCTSHLAEVLQGKIDPLQLLFPNGDFSDLTHLYQNSPIAKMMNTLVKQAITTAITDIPPEQPLRILEIGAGTGGTTAHLLPELAQRNIEYFFTDVSPLFLSKAQQQFADYSCVRYQLFDVEKPPTTQGFTENSFDIIIAANVLHATEDLRQTIIHIKQLLSRGGLLILLEGVQPVWWLDLIFGLTEGWWRFQDYDLRPHHPLISSEQWQKLFTQEGFDSTTLLETIGNQAVITAQTPKLPDNCVILADKQGLGEKLATHLQTQGVTCHLIFADSQPPTLPTPASHLINLWGLDVPHPDELTTAELIKQQQILCESLLYSLQNNIKYQQLPQWWLVTQGAVNTDQDTSIKGLAATTLWGISKVIQLEHPEINCHCLDLDPNHTPIEQLDILLKELLTNSPEKEIAWRTNIRYTPRLSQNSLCVSAPLREKNNSLMQRLTIPQRGTLENLTFQTVNRTSPNPGEIEIRIQATGLNFRDILNALDLYPGEPGMLGCECVGEIVAIGTDVKHLQIGQTVIALASGSFSQYVTIKAAMASPAAGIAIPLPQNLNIIDGATIPAAFLTAFYTLRHLAKIRPGDKVLIHAAAGGVGQAAIQIAKLAGAEIFATASPQKWETLRNLGVTKIFNSRTLDFAEEILTQTQGEGVDIVLNSLRGDFIAASFAVLKPQGRFVEIGKIDVWTEEQVKQVKPNANYFLVDLVDLCQQQPELIQNMLKQLVEEFEQHRLQPLAAKVFPMNQIVDAFRYMQQGKHIGKVVVDWGLGNSLYPLKENCTYLITGGLGGLGLLVAEWLVKMGACHLLLLGRNAPTADAVSKIQELETTGARIAIAQIDVSQTAALSNILTQIENSAYPLAGIIHAAGVLDDGALLQMNWERFQKVMAAKVMGAWNLHTLTQHLPLDFFVLFSSATALFGSPGQANHVAANTFLDTLAHYRHTKGLPAMSINWGIWSEIGSATQATKQMQQRGIEAIAPADGIQILQHLMTQPLTQIGVVPINWQKFPINSPFFENFYPTNNPETRQTPPPKTDLLEKLSQLDKQTGYELLETYLQEQIAKVLGFPPHEINPQTGFFDLGMDSLTAIEFKNRLQTDLKITLPSTIAFDYPNIQTLAHHLNNQLQPTPEPQTEPSTAEIAQLLAQELEQLN
>NC_003272.1|WP_010996834.1|3248681_3252302_+|AMP-binding-protein
MINRQRQILSLTPHHAATLVDVLRAWTQQKGDAVGFAFWQDDKQVHLTYTELDHKARAIAVHLQAMRWQGERVLLMYPPGLELIAALMGCFYAGLVAVPVYPPRPNNNITRLLSIGEDAQAKGILTKVSLENSLKQVSKNTAFEALPKVATDSIILSVGEAWQNPQLTADSLALLQYTSGSTGTPKGVMLSHGNLLHNLGQIYQRFGHSANTHVVSWLPPYHDMGLIGGILQPLYGGFPVTLMSPVAFLQKPLRWLQAISQTQATTSGAPNFAYEMCVRNIRLDECLDLDLSSWELAFTGAEPIRQETLERFATTFKTYGFRREAFYPCYGLAEATLFVTGKNKDEIVFNHTSQSLVSCGSPSDDQTIIIVNPESREPCAAGEEGEIWLKGASVAQGYWQNPQETKATFQGALASGTGGFLRTGDLGYLNSGELFVTGRIKDVMIIRGQNYYPHDIEAAVSQCHPALSAYWGAAFSVEVDGEERLVVVQEVERSSWRRLDEDGIIAAIRGAVSCEFGLQVYGICLLKPGSIPKTSSGKVQRFACREGFVCGGLDVVFGWELAHAEAQRRREERGEEKEKIVDGLIGWLRDYANHHINSRLMDERRCISPHVVLDFGNKGLLGMQVPSCYGGLGLGYTDTIRIIQQLGAIDPTLALFVGLNNVLGVRPILMYGTDALKAELLPILATGRELAAFALTETGAGANPQAIQSQAISDGDGWLLRGEKIWSGSAAWAGVINVFVKHQQGISGFVVRRGSPGLRQGAEALTMGMRGMVQNTVYLEDIPVTSAQVLGEVGKGMNVAQDAMMYGRLAIASACVGGMQRCVQLMWRYSQRRQIATGKLLDHPIVLHRLQELTCAITVVQSLVMRVGKLLDAGETVPAEVYAACKISAPEFYWQAADLLVQTLGGRGYIESNIAPQILRDARVLRIFEGPTETLCGFLGARVLKQGETLQNFLCQTLGAVEVGTRLRDAVDKIRGRCFDGANITVQRWVYHQVGKLATEAILWAVLDDKSAINWVKHRFDEQLQEILSFNTDNLLFLNGQSLVHHLNEYTKTIGDIEQNLAGEAQELDELLRQSGENPQFIPTTADLPASSEIQTWLKTWISQKLRQPISTIDVNRAFAEYGMDSVTAIELTQDLQEWLKISQPLDATIAWNFPTINALANYLGEVTKENAVPSDNNLDDLSTTDIAQLLSQEIAIARHRKPQMK
>NC_003272.1|WP_010996833.1|3247586_3248264_-|peptidylprolyl-isomerase
MNDSYLERLCQQTITASELISLLAGYQMLPQLYRELLIDQAIASIECTPEEIEQAKQEDPQQTTALATRKLRLEKFKQATWGHKVESYFLTQKAQLDQVTYSLLRTRDMALAQELYFRIKAKEQSFAEIARQYSQGPEAQTGGLIGPTPLTQPHPQLVAKLRASQPGQLLPPTRLGEWIVIVRLEQMVHAKLDDSTRKKLLNKLFQEWLQESLQATLNKTLCTSA
>NC_003272.1|WP_044521438.1|3244519_3247450_-|peptidase-domain-containing-ABC-transporter
MTTSIPSISDFLTTTPPFNLLSTAAIEQLTQKAQLLRYRMGQTIVVKETMPAHVAILYEGQARLIGYSYNSAIPDTIELLQPGAILGWVSLLRGVGCETAIASTEAVFLTIPSVIFQTLLKKEKAFNDALTKHCATSELFDLLSLEVQRRALGEVELTDLVQQMLPQTVVLNLSKGKTPLSQLDPHRLWLLSSGNTNFAIGDRLEPYPDKQNLKVESGIARLIGIPPVSFQPTPTEIEPETITDDIPYASEQPPALESKDRQGKYPYVSGKGVLNETLACFQMLSQYWNMPFRRDVIRRVLQNQQQRLGSVSLQLCGSLAEMLGLRAQLAVVPAIAISRLQTPVMLQWQNRFAILYKATDSELVLGVPGKGIQRHKPKAFIETWGEQGEILLLQPTKETPRKRFGLSWFLPFVSQYRRVLSEVLISSFFVQLFGLANPLITQVIIDKVLIQNSPATLNVLGTLLVATALFEAVLTTLRTNLFVETTNRIDMALGSEVINHLLRLPLGYFEKRPVGELSTRINELENIRQFLTGTALTVVLDAIFSVIYIVVMLYYSWLLTLVALATVPLFALLGVIVAPVIRQQTRTRAERNAQTQSYLVEVVSGIQTVKAQNIELRSRWQWQDRYARYVADSFKNALTSTTAGSISKFLNQLSGLLLLWVGAFLVLQGTLTLGQLIAFRIIAGYTTSPLLRLVQLWQNFQETALSLERLSDILDTPQEEAVRQDIPLPDIQGAVKYDHITFRFTNSPTPQLDNISLDIPPGKFVGVVGQSGAGKSTLTKLLTRLYDPEVGRILIDGYDIHKVELYSLRRQIGMVLQDTLLFDTTVQENIALNNPEATPEEIINAAKIAYAHEFIMSLPMGYNTRVGERGSALSGGQRQRIAIARTVLQNPRLLIMDEATSALDYNSERQVCQNLQQALEGRTVFFITHRLGTIRHADIILMMEQGRIAEQGTHDELMALRGLYYCLYRQQEAVVV
>NC_003272.1|WP_126987613.1|3242897_3244259_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MFVSIAAVAWASVSKIEQAVPAQGKLEPQDNVNEVQIPIEGVVKTIHVKDGHRVKAGDLLVSLDPTVSQAQENSFQKVRTVLEQENQFYQAQLSGKEDTSPTVSIPAQFVSLTRSRAVLLAENRLFQAQLDGNAGEMSLSAEQRQRVKSELEELTSRVTSAQLEIDQLQKQYSQADIKLKSNQEKLKVNEQILTDISELALEGGISRIQYLNQQQEVESIRAEIAQLQEEKIRLQAAIAQAQAKVQNTKDIDRRDLTARIGNNSQRIAEIDSQLSKAIVDNKKRIAELDSQLSQTNQALKYSVVRSPVDGVVFDLKAHAPGFVAKSTEPVLKIVPQTNLVAKVSITNQDIGFIREGMRVDVRIDSFPYSEFGDIKGTLTWIGSDALPPTQLQPYYTFPATVTLDQQYLLSQQRKIALQSGMSLNANIKIRERTVMSIFTDFFNKTGESLKFVR
>NC_003272.1|WP_010996830.1|3240066_3242670_-|TonB-dependent-siderophore-receptor
MTWNYWQPAIGVASVITVLVSQPVWAAPVPVTAVELYDTDQGLEVVLKTSPGVTLTTQTSTEDKTLIITVNNAQLQLVEGKPPITTNNPIPGIAEIFVGQSDPNTIEIEITGVNAVPQFNLRQDGQEFIVSLPFVTTSQTPPTTQTPTPETPTAETPTPETPTTPETPTAETPPPEEPDEPIELTVVGDQFRPTYQVPNSSVGTRTDTPLIDVPQAIQVIPQEVIKDQGTRSLGEVLKNTSSASSGRTSSQAPALTPVIRGFESRNLLRNGLRDDSLRFQSEIANVERVEVLKGPASVLFGQGDLGGVVNLVTKQPLNTPYYSIGYQVGQFGLHRPTIDFSGPLDKDGVAYRLNAAYQTAESFKDFENSESFFIAPVVRLIGNENTNLTASIEYLKYRSFETAPDLPASGTVISNPNGRVSRETNLGEPSLSESESLVTRLGYQLDHRLNDNWTIKSEFSTAFLDVPESTVVLPIANSSTSNGLNRDGRTLRRFLVENPSSTTSLTFNNSLLGKFKTGSIEHSLLFGVEVTREETEDRLDFRQLRDIDIFNPVYRPESVSSFAIPFGNTNTEKNSLGIYAQDQISLSKNIILVLGGRLDFVNQDYEDLLSEEESFERNDTVFSPRVGIVYKPSENLSLYASYSRSFTPVVGRTRVLDTNTGITTVGEPFEPERGTQYEVGLKANLLGDRLSTTLAFYNLERTNVAAQGLSEPLSQIQIGKQRSQGIELDVAGEILPGWNLTASYAYTDSKITEDSRPEFQDRQLQNVPRNSFGLWSTYELQAGSLKGLGFGLGVFTQGERQGDLRNTFTLPSYLRTDASIFYRRDKFRAAINIQNLFDENYYEGARDIVRVIPGAPFTLTGSVSFEF
>NC_003272.1|WP_010996829.1|3238655_3239969_-|MFS-transporter
MRTFLIIWLGQIISTIGSFMTVFALTIWVWDKTGSATALALVGFFAQMPKILITTFAGIAVDRFNRRFLMILAEVVAVLCTLAIAILYLNQQLQVWHLYIIVMLYGGFGQLQVLAYSASISLLVPKEQFTRAESLGSAVNYSAAIFSPALAGFIYPRLGLQAIFWIDLTTFAAAFITLLIVKIPQPAVEPNHRDNTESLWQKLTFGFRYIWANPSLTAMAIAFTLFAIPNDISKVLYTPMILARTGGNSEILGTVTTAAGIGGVIGAIALSIWGGFHRRIHGMLLGFIGHGIFRTLIGLGQTVSVWMGAHFLSSTLIPLFYSSSNAIWYATIPPGLQGRVLAADQLIGVTVAAITPLIAGFLADRVFEPAMRPTGILAPIFGNIFGTGTGSGITLLFVSMTICTVLVGIFGYTWRTLRKVEDLIPDQKLPESSGVVD
>NC_003272.1|WP_010995738.1|3275412_3276306_+|IS982-like-element-ISNsp1-family-transposase
MFSIEEFIIAVFCCVDDVLMEITQIYPIKRRGFAPSLRESEVLTMEVVAEFLGIDADKDIWKYFHRHWLGLFPQLKSRYAFIRQAANCWQYKELIQQKLAQYLGAYSDQLHLIDGLPIPLCGLSRAPNCRSFKSLADYGFCAAKKQTYYGFHGHLIVSGTGVISGFTLTPANGSERDALWDLITRIKGLLIGDKGYLSQFLSGELKEVGITLQTPLRSNMSDSRSRSSVRLMQRFRRLIETVIGQLVERFHIEKIRARDMWHLTSRLNRKILAHTVCFWLNRHNCDPLQFDDLVTEY
>NC_003272.1|WP_010996839.1|3276292_3276832_-|type-I-restriction-endonuclease-subunit-R
MSKVGQRERQTQNRIVQLFQQQLKYRYLGDWHDRPNNSNIETEILSTFLRDKQGYSNSLITKALYELNKVAGDQSKSLYDINKQVYSLLRYGVNVKEEVGENTQTVWLINWEKPLENDFAIAEEVTVKGENTKRPDIVLYVNGIAIGVLELKRSTVSVSEGIRQNLDNQKSRHVRLNIL
>NC_003272.1|WP_010996840.1|3276935_3277325_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MKLLLDTHIWLWYLLGNERLSPGLQTTIAATTTELWLSPISIWETLLLAEKGRISLQPNPVAWVDLALNTLEIREAPLNRHIAILSRQIQLPHQDPGDRFIAATAVHHQLTLATVDTNLTGTSWLQTLS
>NC_003272.1|WP_010996841.1|3277321_3277558_-|hypothetical-protein
MEHIATSELPETLQQIFAEIQRTKTPVTVTHDGEPLVIIYPATPQPQRPAFGAMKGSGEILGDVIAPVIPAATWEALQ
>NC_003272.1|WP_049942447.1|3277623_3278901_-|restriction-endonuclease-subunit-S
MKTNFPESYQKTEFGIVPNDWKIRKLVECCNKITDGTHDTPKPLAQGIPFLTAIHVKEGFIDFNNCYYLPQSIHESIYKRCNPEKNDVLMVNIGAGVATTALIDVEYEFSLKNVALLKPDKNNLIGSYLNYCLSLNKFRITNQLLSGGAQPFLSLKQIGEISIPIPPTIEEQEAIAQSLSDVDALITECDRIIAKKHNTKQGTMQQLLTGEKRLPGFSGEWEVEEFEQVLKVVDGDRGDNYPSNDELFDNGYCLFLSAKNVTKGGFKFSDCTFITKEKDNLLGNGKLCKKDVVLTTRGTVGNIAFFDYSVPFENIRINSGMVILRSEDKNLDNSYLYSFLKSHLFQTQIDRAVFGSAQPQLTVKGISKFKIPVSSLPEQKAIAQILSDMDTEIAALEQKRDKYKAIKQGMMQELLTGKTRLICSS
>NC_003272.1|WP_158303715.1|3281509_3281656_-|hypothetical-protein
MQTSIYFPKDIHDALVRWAQEEDRPISNLVVRIVSKAVEEREKQNPPQ
>NC_003272.1|WP_158303716.1|3281937_3282084_-|hypothetical-protein
MTISPANTPFSICVTKINHLFTFTRQRSHLTRSPYKNLGTFAATSQIC
>NC_003272.1|WP_010996846.1|3282085_3284110_+|type-V-CRISPR-associated-protein-Cas12k
MSRDRKKGSKSPSLRTIRCHLHTKEDVLRKVWEEMTQKNTPLIVELLKSVSEQPEFETNKENGKITKKEITNLRKSLTQDSGRLYSSVDNLVQEVYSAWLTLYQKRKKQKEGKEYFLNNILKSDIELVEESNCDLQILRAKAQEIISNPQDILRQITIDNPKDKPTKSIQKRVRKNINASNSDTAKNNILNSQEKTTEENISKSVIEILYEIHKTTQDTIIRCAVTYLIKNYTKISDTEEDLNKLKERRAEKEIEIKRLEKQIQDSRLPNGRDITGARYLEAFDKLINQVPKNNEEFANWIADASRKISNLPYPIDYLYSDLTWYKNQDGKIFVYFNGWSKYHFQICCNKRQRHFFERFLEDHKAWKESEKGEVKLSGSLVTLRCVQLLWQQGEGKGEPWKVNKLSLHCTYDTRLWTAEGTEEARKEKINKIQRQVEQAEETENLDEQQQKQLKKNKSSLSRLNNSFNRPIQPIYQGLSNMIVGVSFHPVELATVAVVDTTTQKVIAYKTINELLDNAFHLLSRMRRQQIHFRKERKKAQKKDSPCNLGESKLGEYVDKLLAKRIVEVAKEYQAICIVLPKLKDMKEIRTSVIQAKAETKFPGNVNAQKLYVKEYNRQVHNWSYNRLQESIKSKAAELKISIEFGIQLSYDTLQAQARDLALSAYQCRIHTIDR
>NC_003272.1|WP_096637149.1|3284235_3285029_-|IS5-family-transposase
MRRKSYSTDLNDSEWAILAPLIPPAKCGGHPRTTDMREVCNAIYYHLKTGCQWDMLPGDFPPSSTVYSYYRKWQKRGIWEQMNHTLRDQVRQKMGKSTQPTAIAADSQSVKTTGKKGDVYGFDGGKKVKGRKRQTLVDSLGLLLKVVVSEANAGERLLAAYTLMELLEERPELLEKVEVIWVDSGYDGDKFALSVWLMIQAHVEVIRRTNQEFQVLPKRWVVERTFGRLNQYRRLSKDYEHLPEMSEAAIYAVMTRIMLRRLVV
>NC_003272.1|WP_010996820.1|3285535_3286429_+|IS982-like-element-ISNsp1-family-transposase
MFSIEEFIIAVFCCVDDVRMEITQIYPIKRRGFAPSLRESEVLTMEVVAEFLGIDADKDIWKYFHRHWLGLFPQLKSRYAFIRQAANCWQYKELIQQKLAQYLGAYSDQLHLIDGLPIPLCGLSRAPNCRSFKSLADYGFCAAKKQTYYGFHGHLIVSGTGVISGFTLTPANGSERDALWDLITRIKGLLIGDKGYLSQFLSGELKEVGITLQTPLRSNMSDSRSRSSVRLMQRFRRLIETVIGQLVERFHIEKIRARDMWHLTSRLNRKILAHTVCFWLNRHNCDPLQFDDLVTEY

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Crispr_ID: NC_003272_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_14

3516819-3517367

Orphan

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CRISPRCasFinder
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CRT
TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	PILER-CR

7 spacers

The CRISPR arrays of NC_003272_14

>merge|NC_003272|14|3516819-3517367|CRISPRCasFinder,CRT,PILER-CR
TGTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACCTATCAATCGTTATTGCTGTTTTTTTAGCATTTTAGCGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACTTGCAGCTACTGCTGATGCAACTTGAATCTGTACTTGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACCGATATGGTTCCGTTGTTGAGGGTTGCCCTGCGAGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACATGAGTGAAGATAGCTTGATAAAAAAGCTCAGTTTCAATCCATGATAGGGATTTTTGTTAGTTAAAACTTGAGGCTAGATTATTTATTTTTGATGCTGTTTCCTGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACCCTTTTCTTGTTTTTCCCCACGCAGTATAAGCGAGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACCTTCGTTCCACACATTGAAGAAGATCCCTTTGTTGTATAAGCGAGTTTCAATCCCTGATAGGGATTTTTGTTAACGCGATGT

>NC_003272|14|13|3516819-3517367|CRISPRCasFinder
TGTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CTATCAATCGTTATTGCTGTTTTTTTAGCATTTTAGC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TTGCAGCTACTGCTGATGCAACTTGAATCTGTACTT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CGATATGGTTCCGTTGTTGAGGGTTGCCCTGCGA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	ATGAGTGAAGATAGCTTGATAAAAAAGCTCA
GTTTCAATCCATGATAGGGATTTTTGTTAGTTAAAAC	TTGAGGCTAGATTATTTATTTTTGATGCTGTTTCCT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CCTTTTCTTGTTTTTCCCCACGCAGTATAAGCGA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CTTCGTTCCACACATTGAAGAAGATCCCTTTGTTGTATAAGCGA
GTTTCAATCCCTGATAGGGATTTTTGTTAACGCGATGT

>NC_003272|14|7|3516819-3517366|CRT
TGTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CTATCAATCGTTATTGCTGTTTTTTTAGCATTTTAGC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TTGCAGCTACTGCTGATGCAACTTGAATCTGTACTT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CGATATGGTTCCGTTGTTGAGGGTTGCCCTGCGA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	ATGAGTGAAGATAGCTTGATAAAAAAGCTCA
GTTTCAATCCATGATAGGGATTTTTGTTAGTTAAAAC	TTGAGGCTAGATTATTTATTTTTGATGCTGTTTCCT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CCTTTTCTTGTTTTTCCCCACGCAGTATAAGCGA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CTTCGTTCCACACATTGAAGAAGATCCCTTTGTTGTATAAGCGA
GTTTCAATCCCTGATAGGGATTTTTGTTAACGCGATG

>NC_003272|14|8|3516821-3517285|PILER-CR
TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CTATCAATCGTTATTGCTGTTTTTTTAGCATTTTAGCGT
TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TTGCAGCTACTGCTGATGCAACTTGAATCTGTACTTGT
TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CGATATGGTTCCGTTGTTGAGGGTTGCCCTGCGAGT
TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	ATGAGTGAAGATAGCTTGATAAAAAAGCTCAGT
TTCAATCCATGATAGGGATTTTTGTTAGTTAAAAC	TTGAGGCTAGATTATTTATTTTTGATGCTGTTTCCTGT
TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CCTTTTCTTGTTTTTCCCCACGCAGTATAAGCGAGT
TTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010997043.1\|3530310_3531807_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997038.1\|3525096_3527325_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_003272.1\|WP_010997042.1\|3529350_3530127_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NC_003272.1\|WP_044523071.1\|3518350_3521692_-\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NC_003272.1\|WP_010997041.1\|3528548_3529328_+\|photosystem-II-S4-domain-protein	unknown	unknown	gnl\|CDD\|132113
NC_003272.1\|WP_010997040.1\|3527928_3528435_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997025.1\|3499901_3500894_-\|PleD-family-two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|226229
NC_003272.1\|WP_010997035.1\|3522617_3522926_+\|circadian-clock-protein-KaiA	unknown	unknown	gnl\|CDD\|369467
NC_003272.1\|WP_010997031.1\|3513585_3514455_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|130252
NC_003272.1\|WP_010997030.1\|3511459_3513463_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|130252
NC_003272.1\|WP_010997026.1\|3500890_3506344_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236848
NC_003272.1\|WP_010997029.1\|3510546_3511386_+\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NC_003272.1\|WP_010997039.1\|3527413_3527791_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_044521526.1\|3498852_3499857_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|226691
NC_003272.1\|WP_010997036.1\|3523031_3523358_+\|circadian-clock-protein-KaiB	unknown	unknown	gnl\|CDD\|181770
NC_003272.1\|WP_010997033.1\|3516115_3516748_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226442
NC_003272.1\|WP_010997027.1\|3507042_3508500_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|367144
NC_003272.1\|WP_044521530.1\|3515094_3515970_+\|lipid-kinase	unknown	unknown	gnl\|CDD\|183857
NC_003272.1\|WP_010997028.1\|3509079_3510456_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NC_003272.1\|WP_010997037.1\|3523432_3524992_+\|circadian-clock-protein-KaiC	unknown	unknown	gnl\|CDD\|131703

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010997038.1\|3525096_3527325_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	5.27219e-67
NC_003272.1\|WP_010997042.1\|3529350_3530127_-\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	4.71972e-112
NC_003272.1\|WP_044523071.1\|3518350_3521692_-\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	5.20964e-48
NC_003272.1\|WP_010997041.1\|3528548_3529328_+\|photosystem-II-S4-domain-protein	gnl\|CDD\|132113	TIGR03069, RNA-binding_S4_domain-containing_protein, photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium. [Energy metabolism, Photosynthesis].	8.13493e-148
NC_003272.1\|WP_010997025.1\|3499901_3500894_-\|PleD-family-two-component-system-response-regulator	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	3.20635e-132
NC_003272.1\|WP_010997035.1\|3522617_3522926_+\|circadian-clock-protein-KaiA	gnl\|CDD\|369467	pfam07688, KaiA, KaiA C-terminal domain. The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. The overall fold of the KaiA C-terminal domain is that of a four-helix bundle, which forms a dimer in the known structure.	5.3649e-46
NC_003272.1\|WP_010997031.1\|3513585_3514455_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|130252	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other].	2.84137e-147
NC_003272.1\|WP_010997030.1\|3511459_3513463_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|130252	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other].	7.66514e-146
NC_003272.1\|WP_010997026.1\|3500890_3506344_-\|PAS-domain-S-box-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	6.23417e-121
NC_003272.1\|WP_010997029.1\|3510546_3511386_+\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	3.74233e-108
NC_003272.1\|WP_044521526.1\|3498852_3499857_+\|glycerate-kinase	gnl\|CDD\|226691	COG4240, COG4240, Predicted kinase [General function prediction only].	9.50176e-159
NC_003272.1\|WP_010997036.1\|3523031_3523358_+\|circadian-clock-protein-KaiB	gnl\|CDD\|181770	PRK09301, PRK09301, circadian clock protein KaiB; Provisional.	3.07662e-65
NC_003272.1\|WP_010997033.1\|3516115_3516748_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|226442	COG3932, COG3932, Uncharacterized ABC-type transport system, permease components [General function prediction only].	5.0461e-85
NC_003272.1\|WP_010997027.1\|3507042_3508500_-\|YdiU-family-protein	gnl\|CDD\|367144	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family.	0
NC_003272.1\|WP_044521530.1\|3515094_3515970_+\|lipid-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	0
NC_003272.1\|WP_010997028.1\|3509079_3510456_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	6.81678e-109
NC_003272.1\|WP_010997037.1\|3523432_3524992_+\|circadian-clock-protein-KaiC	gnl\|CDD\|131703	TIGR02655, Circadian_clock_protein_kinase_KaiC, circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. [Cellular processes, Other].	0

>NC_003272.1|WP_010997033.1|3516115_3516748_+|exopolysaccharide-biosynthesis-protein
MAIHINSHQIHLSFSQEIKSLLQRLAEQHLTLGDILAETSERGFSLVIALLVLPFLFPMPPGATGPFGAACLILSVQMLLGRRSPWLPKKIAHYKFPRPFAQFLLQNLRRVTKVVEKIARPRLSKIAHNPLIWRINGFCISWLTILLISPIPLTNPIPTVGILLLAIATIESDGLLICLSYVVTAVITVIFAFIGYGLWLAPSILPSIFK
>NC_003272.1|WP_044521530.1|3515094_3515970_+|lipid-kinase
MSLRALLLVNRHARQGQERLLEAIDHLKKFNFQLIEETTEHPKHLSQVIHKYKDQVDLVIVGGGDGTLNAVVDALVETQLPLGILPLGTANDLARTLGISNSLPEACKTIAEGELRRIDLGWVNGKHFFNVASLGLSVKITRRLTKEFKRRWGVFAYAVTAIQVIWESRPFSAEIRSKDRVFRVKTVQIAVGNGRYYGGGMAIVPDASIDDQRLDLYSLEISHWWEIIPLLPAMRNGRHIHRQNVRALNGQEFEVYTRKPRAINTDGEITTYTPATFRVLPKAVAVLVPPV
>NC_003272.1|WP_010997031.1|3513585_3514455_+|ATP-binding-cassette-domain-containing-protein
MQNRSLSVTETTRSIQERQSADATNYNRPFLEIKDVSKVYPTKKGPFTVLDGVNLNVEQGEFLCVIGHSGCGKSTLLNMVSGFNFPSSGQVLLEGQPITQPGPDRMVVFQNYALLPWRTAFENIYLAVNAVYPNKPEPEKRAIVREHLAMVGLADAMEKKPMQMSGGMRQRVSIARALAIRPKVLILDEPFGALDAITKEELQEELLKIWGDNRCTVLMITHDIDEALFLADKLVMMTNGPHAKIGEVLEIPFSRPRDRARIMEDPEYYKLRNYALDFLFNRFAHDDVG
>NC_003272.1|WP_010997030.1|3511459_3513463_+|ABC-transporter-substrate-binding-protein
MSVFVAVDQIDKVFELTGGGKYIALKGIDLQIRKGEFVSLIGHSGCGKSTLLNMIAGLDLPSEGIVTLEGQRVSRPGPDRMVVFQNYSLLPWRTVRENIALAVNSVMKGMPEAERKSIIEKYIDMVGLRPHADKQPGMLSGGQKQRVAIARALAIRPKLLLLDEPFGALDALTRGNLQEQLMQICEENEVTAVMVTHDVDEAVLLSDRIVMLTNGPESKIGDILEVDIPRPRKRMEVVEHPSYYSLRSEMIYFLNQQKRVKKIRARKTADVARHGLEKVNLEIGFLPLTACAPLAVAKEKGFFTKHGLDEVNLVRETSWRGIVDGMKGGYIDAAQMPSGMPMWLTLGGHDNQPLPVVTALTMTRNGNAITLAKRFYDEGVRSLSDFKNYLLRTRDQRHIMGVVHPASMHNLLLRYWLAAGGIDPDLDVDMRTIPPAQMVADLQNKSIDGYCVGEPWNYRAAVENVGFTIATDLEVWLGHPGKVLGVREDWAERYPNTHIALTKALLEACEYCSRPENVEEVRRIVAGRDYVSTDLDYIQLEDPNSLVCDIDHPLRDYAHHQFFAESAINRPSRTEQIWIMSQLARWGDTPFPRNWVEVVERVCRVRVFSTAARELGLDISYTRQPIELFDGTPFNADDPIAYLNSLHIKRDFSIAEVILDSPSRRVA
>NC_003272.1|WP_010997029.1|3510546_3511386_+|nitrate-ABC-transporter-permease
MTVAQRRTANPKFDHGFLSQLQKQFPNIVPPAIAIAIFLALWQLFSWTPGATLPGPIKVVQDTWMLILYPFYDRGGIDKGLFWQIFASLQRVAIGYFFAAVVGIALGIVIGVNKTMSKALDPLFQLLRTVPPLAWVPISLAALRQNEPAALFVIFITAIWPILINTAVGVKEIPQDYNNVAKVLQLSKKEYFLNILIPAALPYIFTGLRIAIGLAWLAIIAAEIVMSGIVGIGFFIWDAYQNNYISEIILALVYIGAVGLLLDKLMVWIQNLILPTEQK
>NC_003272.1|WP_010997028.1|3509079_3510456_+|ABC-transporter-substrate-binding-protein
MTEFFNQFSRRKFIFTAGASASAVFLKGCLGNPPETTGGTQSAPTAQPAANVSAEQAPEVTTVKLGYIPIVESAPLIIAKEKGFFAKYGLTNVELSKQASWGSARDNVEIGSAGGGIDGGQWQMPMPHLITEGLITKGNQKIPMYVLCQLITHGNGIAIANKHQGSGIGLRLASAKSLFSKLKASPTPFTAAQTFPAVNQDFWIRYWLAAGGIDPDADVKLLTVPSAQTVANMKTGTMDAFSTGDPWPFRIVKDKVGFMAALTAEIWKNHPEEYLAMRSDWVDQHPKATKALLKGLMEAQQWCDNFDNRKELAEIVAARAYFNVPVDVLIDPYMGKYDMGEGRQIDDRSMAALYWKDEKGSVSYPYKSHDLWFITESVRWGFLPKDYIDNNAAKARALIDKVNREDIWKEAAKEAGIAAADIPTSTSRGIEEFFDGVKFDPENPQAYLKSLQIKKVSV
>NC_003272.1|WP_010997027.1|3507042_3508500_-|YdiU-family-protein
MTLAETFNTENHGNPLITLNYEPALESLGNDYYDEVTAAEFPQLTLRWRNDAILPRLGLNPQIVTDEDFITAFGLFQGRKPLLALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETGLGLWRGDEPSPTRSSVMVRMNKSHIRFGTFERLHYFQRSDLIKKLLDHVIEHYYRHLAHESDKYALFYAELVKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYNPYFTAAYFDYYGRYCYIQQPSICQWNLEMLQVPLRAVIDKADMEAGLAKFSEYCHAEYNSLMLKKLGFEELKTPEAEELLSLTLKFLQESQVGYHQFFYEMARTFSIKWRDEPGLVLSGSDIVPPSGTDANFDNWCVLYHKILNNFDYEQVKIIAQNLTHYNPKTSLLRPTIEEAWEPIVQEDNWQPFYDLVKSIQSRG
>NC_003272.1|WP_010997026.1|3500890_3506344_-|PAS-domain-S-box-protein
MNRQHKHHRCNSVNLLSKQNLLPFLLGIVILLVVVMLWLRLQAEEEIKIQQLIKQQAIATQTELVTQLNTRILALKRIGKHWEMHGNIPQAQWELEAKAYLEDYGGYQAIKLVDPSWQVLRAVSVANNKAAENLEMIPKFPQWTGATSHETTVTRTVNLNQGDRVFFACVPLWMGDKFGGAVLGVFQVKQLFESVLHIAPGYKIRVFDGQELIYDQDRQSSTLPLWQQAVNIDFYGMTWQLQIYPTPELLKDLFSPLPTVVLVAGIFNAGAVTLLIYFAQATKLSNHKIGRINQELADRIEKQTQVEIALRASETRLRELVETVRVIPWEFDLKTQHFTYVGPQVETLLAYPVAQWYEENFWDNHLHTLDRDWAVRFCQEAANKGQNHELEYRMLAADGRVVWLRDVVNVVQVDGTPVMLRGFMFDITDLKRVEETLRLRERALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQSAIEELRSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSHFIGIQTDISDRQQAEASLRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKNHICGQSISTLHKVDEDAALNSAIIAEITKQGRWSGEINFVRQDGSQGICETTIVALQDDQGQSMATISVNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYVSETYRRTFQLPTQELIGKNIVDIYPPELTQTFRETIQIVARTRQVMETVESAPCSDGTGRDFLVYKFPISSKPDECLIGCIAIDITERKQAEAALRKSEERWQLVIEGNQDAIWDWNIITNETFRSARWAELIKEQNYQPIADHADCVSRIHPDDYERVMAVKQDCLSRKIPNYVVEYRLRCNDDSYRWVLVHATGQWDEQGNPVRMVGSIKDITERIEAQEALQRQLHRTLLLEKITQKIRQSLDSKEIFETAATQIGQALAVDRCLIHSYISHHDPHIPLVAEYNNVLDYCSMQKWEFTTTGNQHILKMMSQDKAIASANVYTDPLLQTAVPSCCEIGVKSMLAVRTSYQGEPSGAICLHQCGYFRQWTNEEIELLEAVAAQLGIALAQAQLLEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKNKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQTKNSISSASVATGSTFYFSMTVPVVAHADLETPITSPVQLSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMAFDIAILDVQMPEMDGLTLARQIRQRPSYQHLPLVILTSWGQPDTDLSDIEFAACLNKPIKQSQLYDVLASTLGNQPIRASVVPDRSTEINSCLAQQIPLRILLAEDIVVNQKVALLILKKMGYRADVVANGLEVLEALQRQFYDVVLMDVNMPEMDGLKASQIICQTWSPSSRPYIIAMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHPSGSAIEKALEKTSSQNQTFTDISDLKFATIDTKILQALRDMLGGDKVAFAELINCYLTESPKLIQNIDVAINTKDTQGIWKTAHKFKSSSGSVGAVFLAQLCKLLETKGRNNNLEGCVELGSQLRQEYELVQTALHREVNKETS
>NC_003272.1|WP_010997025.1|3499901_3500894_-|PleD-family-two-component-system-response-regulator
MKNTVPESQCLILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIFQELQPDIVLLDAIMPDLDGFECCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQFHLQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYPDGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRDGCQQYIKQSSSPVYFLNAHHRLA
>NC_003272.1|WP_044521526.1|3498852_3499857_+|glycerate-kinase
MQVGQKEAEAAALADELRAKAFGITAANVEEMIQERSQLLQGVLPAFNQFCQNNLKIPPEQMFPVLWDLWLPLGMKIAAQHQQLKRPFIQGILGSQGTGKTTMSLVIQLILQHLGYRTLSLSLDDLYKTYSDRLVLLQQDPRLIWRGPPGTHDIDLGLNVLEQIRQGKSPVIVPRFDKSAHAGAGDRTKPDVITGVDILIFEGWFVGVRPIDPSLFNFPPSPILTDEDKAFARDMNLRLNHYLPLWEKLDSLILLYPTDYRCSLEWRKQAEQKMIAAGKTGMSNTQIEEFVNYFWRSLHPELFIQPLSQCAALVDLVVEIHPDHTFGQVYQPNW
>NC_003272.1|WP_044523071.1|3518350_3521692_-|response-regulator
MSMLQYPLDEFLANVTSCLETSTLAMVLEIFEQQQCDGRSRSVSKRSPALGDRLVIVNEQQCPVGLLHSGQLARKLLAATGNELFLNLQQPLSTFSQALIEPIQILPASHSVEQLGVFWRYHQAHNWEYVLVDGEGKFLGILDSVRLLAALAKEQTANHPHAPNSTYIDGVEAGLRGSPMGGGTPSLQEAAPTRRSLRDVARSLRETPPASRSDQLQPLVQLLERLPWPLMLQTSAGEVLTRNLAWWQQLGALKDPEGVRQQVEAILAATRIKQPEYVGQRSTTGTNHIQGYEQVGEELAQIPATGLLPLSPYEPTTSAKTSSSRCFLDSQMGTCTCVVEVQNGQERVWQFAKILLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPVPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSMELDLDQIVADELRLRQMLVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLHGGDVSFLSREGKGSQFTLLLPPSPPSSGFAESETVVEDIPTANTNTRNRVTNTGQNHNISSQRLVLVVEAVARYIEDLTDQLKTLGYRVVIARSGTEAVEKARRLQPKAIFLNPLLPLLSGWDVLTLLKSDGATRHIPVVVTATGAEKDIAFANRADGFLSLPVEQQSLTPLLDKLCGKPTVQSLGLGINEKNQSKKTLRILRLVDAELESINPHPSLQEHRVIEVDDLDQAELLARVWQFDVILLDVETSLAQTYLQQLTQHPRLAALPLVTCDVETTLAASQIPGLSVFPCLTPRVRDNDSELRKGKLDPLLSVLQIASGICYPPNIFVVDLAMLEDLPQTRRKPAKVSGTERKTVSRGEVAERGTEWFQALIQYLQTAGLKATMARCWAEVLQQIRHNSVDLLLICLGESAIHPEAVKALKALQDLPCNLPPILVIDQQLSRSQVTSRSKLTHAKKQESESIAGVAKAIATQIVPRSISMEDLLTQIHQTLTLNER
>NC_003272.1|WP_010997035.1|3522617_3522926_+|circadian-clock-protein-KaiA
MTQEVDQQILLQQLKSDYRQILLSYFTTDKALKEKIDKFINAVFCANIPVPEIIEIHMELIDEFSKQLRLEGRGDETLMDYRLTLIDILAHLCEAYRGAIFK
>NC_003272.1|WP_010997036.1|3523031_3523358_+|circadian-clock-protein-KaiB
MNKARKTYVLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSDRERVLIGLDLLYEELTEEDWEAQSNL
>NC_003272.1|WP_010997037.1|3523432_3524992_+|circadian-clock-protein-KaiC
MSEKEQQEQQNTSGNGVEKIRTMIEGFDDISHGGLPVGRTTLVSGTSGTGKTLLSLQFLFNGISFFDEPGVFVTFEESPSDIIKNAHIFGWNLQRLINEGKLFILDASPDPEGQDIVGNFDLSALIERLQYAIRKYKAKRVSIDSITAVFQQYEAVGVVRREIFRLVARLKQLNVTTIITTERSEEYGPVASFGVEEFVSDNVVIARNVLEGERRRRTIEILKLRGTTHMKGEYPFTITNDGVNIFPLGAMRLTQRSSNVRVSSGVKTLDGMCGGGFFKDSIILATGATGTGKTLLVSKFLQNGCVNNERAILFAYEESRAQLSRNAYSWGIDFEELESQGLLKIICTYPESTGLEDHLQIIKSEIAYFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTTDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREYNITADGPEIQDSFRNYERIVSGSPTRVSIDEKAELSRIVRRFEDKQGSDS
>NC_003272.1|WP_010997038.1|3525096_3527325_+|TolC-family-protein
MKGQHLFYSFLPGVTAAVLTTQPAVAEAMKVSSVQLVPSSSVVATQNSQTLLVDKSQTQLPNATVQIFPDIIPTSGVTTPNLQFSSSHSHPIILTENTGIDREQKSRQDEVKNFPLKSKLTLSQRLKQRRFSSQQKQINSGITKPKLVTKVVSTTSSTLLAGQQTFSPSYLQNPAPQEKLKTQLPMLLQTKANHVGAAKLLNISSCSPQTCQLTKLTGQQIAQGNTTQDPASVPVPDESTLVDTQAPTDTPVPNESAPTDTPVSTESAPADTQSPRVAPVQTESAPVNTQAPAGAVEVPQNLIPNANPLQFPTKPEEVTLKENQPITLTQALELARRSNRDLQVSLLELQRTQALLKEAQAALLPNLSVSSDVTRSQSASGQLQDELISKQGGVGNNDEPGTAFNSQAQLSYDLYTSGRRKAAIQEAEEQVRFNELDVERQSEEIRLSVTRAYYDLQQADEQVRIARSAVENAQASLRDAEALERAGVGTRFDVLRSQVNLANNTQQLTNNLSRQQTTRRQLATLLSVPQAVNISAADPVQLAGLWNQSLEQSIILAYQNRPELHQQLAQRNISEQQRRQALATLGPQVSFVANYNLLDQFDDGVGLTDGYSVGVRATLNLYDGGAARARASQARANIAIAETRFASQRDQVRFQVEQAFTNQRSNLENVQTANVALEQAREALRLARLRFQAGVGTQTDVINSENDLTQAEGNRITAILDYNRALAELQRAVTSRALISSQ
>NC_003272.1|WP_010997039.1|3527413_3527791_+|hypothetical-protein
MTTVTSQEIALFRSQLADDLGAMEALDLIEDCEGDLEDAAMTLAIKAGQEPERANAEWLDALARKWRAVICEPEFRSALLNGSITEMMAHLKTMPTFPNILATPVLIYILKQGVNDFCEPLDALK
>NC_003272.1|WP_010997040.1|3527928_3528435_+|hypothetical-protein
MNYLVAVLPDRIQAEAAYLALEREGINSTILGRGYKTADEFGLIDPNLQAKKQVQLMAYWLVPFGFFAGFTFSYITGLNTFAWAGEIGNHVVGGILGAASGAMGSVVVGGGVGLIIGGGDALPYRNRLDAGKYLVVVQGSETLSRQATRILRQFEPENIQGYADTSPV
>NC_003272.1|WP_010997041.1|3528548_3529328_+|photosystem-II-S4-domain-protein
MLPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIARAELPLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM
>NC_003272.1|WP_010997042.1|3529350_3530127_-|SDR-family-oxidoreductase
MSTALITGASGGIGKAFAQELAARQTNLVLVARSQHKLHQLAQELQQQHKIQVDVIAKDLTEIDAVADVFDITKSKGLTIDCLINNAGFGDYGDFAQSDRTRQIKIIQLNVLALVDLTHRFLPLMRQNRSGSIINVASIAGFQPIPYLSVYAASKAFIVSFSEALWAENRQYGVRVLVTCPGPTETDFFAEANFPQALVETTNKVMSSEEVVLKSLKALENWEPTVIISDTSTQLRSNVARLVPRKTLLSLLAKHFKA
>NC_003272.1|WP_010997043.1|3530310_3531807_+|hypothetical-protein
MYRLNQRAWKLLLAEVEKCSGNDQVSKIEREIVNKRLEKLRSEKGSPAQIDELRDTVVDIYPQFSEKILKQAAKANQAPGIFTKIKWTVILVGSSAGIVWVVNLPYPMIRWPVARTLPILLLPSYMSMDYHYRGVIQNLEQADQLINKATSSSDIEEGGKKVKEAQKHLDNLPVWFLGYYPQAYCSLFGCSWRFTLDEFEAARQRTARISAVVFQDKNALTPLNQGELAIELAKKQYEQATNSKDREQAIASWQAGIDQLEEIPAQTLAAKTAKAKLRAYTRDFENARIGSFIVAAQEFDLAAEKIKQTQPQTASELWQQAMNRINQVPLENPRYLEAQKLLAIYQGKIQGIVDPKSGKLIEGAKQFALAAAQASQNPPHTETQWRQIAKLWSTAIEQLENVRVEEPGYVEAQKLLATYQTNLGIIETRLQAETESQSSLKQANEQIQSLIAAPPSDPQRFQGQIQGIINQLNTIKPGTTAYPEGQRLLALAQKRLKQ

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Crispr_ID: NC_003272_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_15

3517472-3518084

Orphan

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CRT
GTTTTAACTAACAAAAATCCCTATCAGGGA----------TTGAAAC	PILER-CR
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CRISPRCasFinder

8 spacers

The CRISPR arrays of NC_003272_15

>merge|NC_003272|15|3517472-3518084|CRT,PILER-CR,CRISPRCasFinder
GGGAGAAAGTTGCACACGGCGTTTTGTTAGTTAAAACACAAGAAGCGATCACCTGTAATCAATGAGTCTGGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACACACACATTATCAGCAAATCGTCTAATACAGTCAGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACTTTAGCTTTGGATTGCGTGATAGAGAGGCTGAGGGTGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACTGCTAGGGGGGTGGCTCACTTTGCCTCTTCTCTTGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACCATAGCAAAAGTATTTAAGCTATTCTTTGCTAAGTAAACAGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACGTTTTTTGCGGGATGGGGGGGGTGGGTGAAGATTCGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACCCGCCAGCGATTAGATTGCTGGGGTTAGACATCAGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAACCATCTACAGCGATTGATGTGGCATCAGTAAGAGCGTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC

>NC_003272|15|8|3517472-3518084|CRT
GGGAGAAAGTTGCACACGGCGTTTTGTTAGTTAAAAC	ACAAGAAGCGATCACCTGTAATCAATGAGTCTG
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	ACACACATTATCAGCAAATCGTCTAATACAGTCA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TTTAGCTTTGGATTGCGTGATAGAGAGGCTGAGGGT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TGCTAGGGGGGTGGCTCACTTTGCCTCTTCTCTT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CATAGCAAAAGTATTTAAGCTATTCTTTGCTAAGTAAACA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	GTTTTTTGCGGGATGGGGGGGGTGGGTGAAGATTC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CCGCCAGCGATTAGATTGCTGGGGTTAGACATCA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CATCTACAGCGATTGATGTGGCATCAGTAAGAGC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC

>NC_003272|15|9|3517542-3518084|PILER-CR
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	ACACACATTATCAGCAAATCGTCTAATACAGTCA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TTTAGCTTTGGATTGCGTGATAGAGAGGCTGAGGGT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TGCTAGGGGGGTGGCTCACTTTGCCTCTTCTCTT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CATAGCAAAAGTATTTAAGCTATTCTTTGCTAAGTAAACA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	GTTTTTTGCGGGATGGGGGGGGTGGGTGAAGATTC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CCGCCAGCGATTAGATTGCTGGGGTTAGACATCA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CATCTACAGCGATTGATGTGGCATCAGTAAGAGC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC

>NC_003272|15|14|3517542-3518084|CRISPRCasFinder
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	ACACACATTATCAGCAAATCGTCTAATACAGTCA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TTTAGCTTTGGATTGCGTGATAGAGAGGCTGAGGGT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	TGCTAGGGGGGTGGCTCACTTTGCCTCTTCTCTT
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CATAGCAAAAGTATTTAAGCTATTCTTTGCTAAGTAAACA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	GTTTTTTGCGGGATGGGGGGGGTGGGTGAAGATTC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CCGCCAGCGATTAGATTGCTGGGGTTAGACATCA
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC	CATCTACAGCGATTGATGTGGCATCAGTAAGAGC
GTTTCAATCCCTGATAGGGATTTTTGTTAGTTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010997043.1\|3530310_3531807_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997038.1\|3525096_3527325_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_003272.1\|WP_010997042.1\|3529350_3530127_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NC_003272.1\|WP_044523071.1\|3518350_3521692_-\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NC_003272.1\|WP_010997041.1\|3528548_3529328_+\|photosystem-II-S4-domain-protein	unknown	unknown	gnl\|CDD\|132113
NC_003272.1\|WP_010997040.1\|3527928_3528435_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997025.1\|3499901_3500894_-\|PleD-family-two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|226229
NC_003272.1\|WP_010997035.1\|3522617_3522926_+\|circadian-clock-protein-KaiA	unknown	unknown	gnl\|CDD\|369467
NC_003272.1\|WP_010997031.1\|3513585_3514455_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|130252
NC_003272.1\|WP_010997030.1\|3511459_3513463_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|130252
NC_003272.1\|WP_010997026.1\|3500890_3506344_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236848
NC_003272.1\|WP_010997029.1\|3510546_3511386_+\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NC_003272.1\|WP_010997039.1\|3527413_3527791_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_044521526.1\|3498852_3499857_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|226691
NC_003272.1\|WP_010997036.1\|3523031_3523358_+\|circadian-clock-protein-KaiB	unknown	unknown	gnl\|CDD\|181770
NC_003272.1\|WP_010997033.1\|3516115_3516748_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226442
NC_003272.1\|WP_010997027.1\|3507042_3508500_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|367144
NC_003272.1\|WP_044521530.1\|3515094_3515970_+\|lipid-kinase	unknown	unknown	gnl\|CDD\|183857
NC_003272.1\|WP_010997028.1\|3509079_3510456_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NC_003272.1\|WP_010997037.1\|3523432_3524992_+\|circadian-clock-protein-KaiC	unknown	unknown	gnl\|CDD\|131703

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010997038.1\|3525096_3527325_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	5.27219e-67
NC_003272.1\|WP_010997042.1\|3529350_3530127_-\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	4.71972e-112
NC_003272.1\|WP_044523071.1\|3518350_3521692_-\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	5.20964e-48
NC_003272.1\|WP_010997041.1\|3528548_3529328_+\|photosystem-II-S4-domain-protein	gnl\|CDD\|132113	TIGR03069, RNA-binding_S4_domain-containing_protein, photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium. [Energy metabolism, Photosynthesis].	8.13493e-148
NC_003272.1\|WP_010997025.1\|3499901_3500894_-\|PleD-family-two-component-system-response-regulator	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	3.20635e-132
NC_003272.1\|WP_010997035.1\|3522617_3522926_+\|circadian-clock-protein-KaiA	gnl\|CDD\|369467	pfam07688, KaiA, KaiA C-terminal domain. The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. The overall fold of the KaiA C-terminal domain is that of a four-helix bundle, which forms a dimer in the known structure.	5.3649e-46
NC_003272.1\|WP_010997031.1\|3513585_3514455_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|130252	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other].	2.84137e-147
NC_003272.1\|WP_010997030.1\|3511459_3513463_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|130252	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other].	7.66514e-146
NC_003272.1\|WP_010997026.1\|3500890_3506344_-\|PAS-domain-S-box-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	6.23417e-121
NC_003272.1\|WP_010997029.1\|3510546_3511386_+\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	3.74233e-108
NC_003272.1\|WP_044521526.1\|3498852_3499857_+\|glycerate-kinase	gnl\|CDD\|226691	COG4240, COG4240, Predicted kinase [General function prediction only].	9.50176e-159
NC_003272.1\|WP_010997036.1\|3523031_3523358_+\|circadian-clock-protein-KaiB	gnl\|CDD\|181770	PRK09301, PRK09301, circadian clock protein KaiB; Provisional.	3.07662e-65
NC_003272.1\|WP_010997033.1\|3516115_3516748_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|226442	COG3932, COG3932, Uncharacterized ABC-type transport system, permease components [General function prediction only].	5.0461e-85
NC_003272.1\|WP_010997027.1\|3507042_3508500_-\|YdiU-family-protein	gnl\|CDD\|367144	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family.	0
NC_003272.1\|WP_044521530.1\|3515094_3515970_+\|lipid-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	0
NC_003272.1\|WP_010997028.1\|3509079_3510456_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	6.81678e-109
NC_003272.1\|WP_010997037.1\|3523432_3524992_+\|circadian-clock-protein-KaiC	gnl\|CDD\|131703	TIGR02655, Circadian_clock_protein_kinase_KaiC, circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. [Cellular processes, Other].	0

>NC_003272.1|WP_010997033.1|3516115_3516748_+|exopolysaccharide-biosynthesis-protein
MAIHINSHQIHLSFSQEIKSLLQRLAEQHLTLGDILAETSERGFSLVIALLVLPFLFPMPPGATGPFGAACLILSVQMLLGRRSPWLPKKIAHYKFPRPFAQFLLQNLRRVTKVVEKIARPRLSKIAHNPLIWRINGFCISWLTILLISPIPLTNPIPTVGILLLAIATIESDGLLICLSYVVTAVITVIFAFIGYGLWLAPSILPSIFK
>NC_003272.1|WP_044521530.1|3515094_3515970_+|lipid-kinase
MSLRALLLVNRHARQGQERLLEAIDHLKKFNFQLIEETTEHPKHLSQVIHKYKDQVDLVIVGGGDGTLNAVVDALVETQLPLGILPLGTANDLARTLGISNSLPEACKTIAEGELRRIDLGWVNGKHFFNVASLGLSVKITRRLTKEFKRRWGVFAYAVTAIQVIWESRPFSAEIRSKDRVFRVKTVQIAVGNGRYYGGGMAIVPDASIDDQRLDLYSLEISHWWEIIPLLPAMRNGRHIHRQNVRALNGQEFEVYTRKPRAINTDGEITTYTPATFRVLPKAVAVLVPPV
>NC_003272.1|WP_010997031.1|3513585_3514455_+|ATP-binding-cassette-domain-containing-protein
MQNRSLSVTETTRSIQERQSADATNYNRPFLEIKDVSKVYPTKKGPFTVLDGVNLNVEQGEFLCVIGHSGCGKSTLLNMVSGFNFPSSGQVLLEGQPITQPGPDRMVVFQNYALLPWRTAFENIYLAVNAVYPNKPEPEKRAIVREHLAMVGLADAMEKKPMQMSGGMRQRVSIARALAIRPKVLILDEPFGALDAITKEELQEELLKIWGDNRCTVLMITHDIDEALFLADKLVMMTNGPHAKIGEVLEIPFSRPRDRARIMEDPEYYKLRNYALDFLFNRFAHDDVG
>NC_003272.1|WP_010997030.1|3511459_3513463_+|ABC-transporter-substrate-binding-protein
MSVFVAVDQIDKVFELTGGGKYIALKGIDLQIRKGEFVSLIGHSGCGKSTLLNMIAGLDLPSEGIVTLEGQRVSRPGPDRMVVFQNYSLLPWRTVRENIALAVNSVMKGMPEAERKSIIEKYIDMVGLRPHADKQPGMLSGGQKQRVAIARALAIRPKLLLLDEPFGALDALTRGNLQEQLMQICEENEVTAVMVTHDVDEAVLLSDRIVMLTNGPESKIGDILEVDIPRPRKRMEVVEHPSYYSLRSEMIYFLNQQKRVKKIRARKTADVARHGLEKVNLEIGFLPLTACAPLAVAKEKGFFTKHGLDEVNLVRETSWRGIVDGMKGGYIDAAQMPSGMPMWLTLGGHDNQPLPVVTALTMTRNGNAITLAKRFYDEGVRSLSDFKNYLLRTRDQRHIMGVVHPASMHNLLLRYWLAAGGIDPDLDVDMRTIPPAQMVADLQNKSIDGYCVGEPWNYRAAVENVGFTIATDLEVWLGHPGKVLGVREDWAERYPNTHIALTKALLEACEYCSRPENVEEVRRIVAGRDYVSTDLDYIQLEDPNSLVCDIDHPLRDYAHHQFFAESAINRPSRTEQIWIMSQLARWGDTPFPRNWVEVVERVCRVRVFSTAARELGLDISYTRQPIELFDGTPFNADDPIAYLNSLHIKRDFSIAEVILDSPSRRVA
>NC_003272.1|WP_010997029.1|3510546_3511386_+|nitrate-ABC-transporter-permease
MTVAQRRTANPKFDHGFLSQLQKQFPNIVPPAIAIAIFLALWQLFSWTPGATLPGPIKVVQDTWMLILYPFYDRGGIDKGLFWQIFASLQRVAIGYFFAAVVGIALGIVIGVNKTMSKALDPLFQLLRTVPPLAWVPISLAALRQNEPAALFVIFITAIWPILINTAVGVKEIPQDYNNVAKVLQLSKKEYFLNILIPAALPYIFTGLRIAIGLAWLAIIAAEIVMSGIVGIGFFIWDAYQNNYISEIILALVYIGAVGLLLDKLMVWIQNLILPTEQK
>NC_003272.1|WP_010997028.1|3509079_3510456_+|ABC-transporter-substrate-binding-protein
MTEFFNQFSRRKFIFTAGASASAVFLKGCLGNPPETTGGTQSAPTAQPAANVSAEQAPEVTTVKLGYIPIVESAPLIIAKEKGFFAKYGLTNVELSKQASWGSARDNVEIGSAGGGIDGGQWQMPMPHLITEGLITKGNQKIPMYVLCQLITHGNGIAIANKHQGSGIGLRLASAKSLFSKLKASPTPFTAAQTFPAVNQDFWIRYWLAAGGIDPDADVKLLTVPSAQTVANMKTGTMDAFSTGDPWPFRIVKDKVGFMAALTAEIWKNHPEEYLAMRSDWVDQHPKATKALLKGLMEAQQWCDNFDNRKELAEIVAARAYFNVPVDVLIDPYMGKYDMGEGRQIDDRSMAALYWKDEKGSVSYPYKSHDLWFITESVRWGFLPKDYIDNNAAKARALIDKVNREDIWKEAAKEAGIAAADIPTSTSRGIEEFFDGVKFDPENPQAYLKSLQIKKVSV
>NC_003272.1|WP_010997027.1|3507042_3508500_-|YdiU-family-protein
MTLAETFNTENHGNPLITLNYEPALESLGNDYYDEVTAAEFPQLTLRWRNDAILPRLGLNPQIVTDEDFITAFGLFQGRKPLLALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETGLGLWRGDEPSPTRSSVMVRMNKSHIRFGTFERLHYFQRSDLIKKLLDHVIEHYYRHLAHESDKYALFYAELVKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYNPYFTAAYFDYYGRYCYIQQPSICQWNLEMLQVPLRAVIDKADMEAGLAKFSEYCHAEYNSLMLKKLGFEELKTPEAEELLSLTLKFLQESQVGYHQFFYEMARTFSIKWRDEPGLVLSGSDIVPPSGTDANFDNWCVLYHKILNNFDYEQVKIIAQNLTHYNPKTSLLRPTIEEAWEPIVQEDNWQPFYDLVKSIQSRG
>NC_003272.1|WP_010997026.1|3500890_3506344_-|PAS-domain-S-box-protein
MNRQHKHHRCNSVNLLSKQNLLPFLLGIVILLVVVMLWLRLQAEEEIKIQQLIKQQAIATQTELVTQLNTRILALKRIGKHWEMHGNIPQAQWELEAKAYLEDYGGYQAIKLVDPSWQVLRAVSVANNKAAENLEMIPKFPQWTGATSHETTVTRTVNLNQGDRVFFACVPLWMGDKFGGAVLGVFQVKQLFESVLHIAPGYKIRVFDGQELIYDQDRQSSTLPLWQQAVNIDFYGMTWQLQIYPTPELLKDLFSPLPTVVLVAGIFNAGAVTLLIYFAQATKLSNHKIGRINQELADRIEKQTQVEIALRASETRLRELVETVRVIPWEFDLKTQHFTYVGPQVETLLAYPVAQWYEENFWDNHLHTLDRDWAVRFCQEAANKGQNHELEYRMLAADGRVVWLRDVVNVVQVDGTPVMLRGFMFDITDLKRVEETLRLRERALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQSAIEELRSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSHFIGIQTDISDRQQAEASLRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKNHICGQSISTLHKVDEDAALNSAIIAEITKQGRWSGEINFVRQDGSQGICETTIVALQDDQGQSMATISVNRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYVSETYRRTFQLPTQELIGKNIVDIYPPELTQTFRETIQIVARTRQVMETVESAPCSDGTGRDFLVYKFPISSKPDECLIGCIAIDITERKQAEAALRKSEERWQLVIEGNQDAIWDWNIITNETFRSARWAELIKEQNYQPIADHADCVSRIHPDDYERVMAVKQDCLSRKIPNYVVEYRLRCNDDSYRWVLVHATGQWDEQGNPVRMVGSIKDITERIEAQEALQRQLHRTLLLEKITQKIRQSLDSKEIFETAATQIGQALAVDRCLIHSYISHHDPHIPLVAEYNNVLDYCSMQKWEFTTTGNQHILKMMSQDKAIASANVYTDPLLQTAVPSCCEIGVKSMLAVRTSYQGEPSGAICLHQCGYFRQWTNEEIELLEAVAAQLGIALAQAQLLEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKNKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQTKNSISSASVATGSTFYFSMTVPVVAHADLETPITSPVQLSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMAFDIAILDVQMPEMDGLTLARQIRQRPSYQHLPLVILTSWGQPDTDLSDIEFAACLNKPIKQSQLYDVLASTLGNQPIRASVVPDRSTEINSCLAQQIPLRILLAEDIVVNQKVALLILKKMGYRADVVANGLEVLEALQRQFYDVVLMDVNMPEMDGLKASQIICQTWSPSSRPYIIAMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHPSGSAIEKALEKTSSQNQTFTDISDLKFATIDTKILQALRDMLGGDKVAFAELINCYLTESPKLIQNIDVAINTKDTQGIWKTAHKFKSSSGSVGAVFLAQLCKLLETKGRNNNLEGCVELGSQLRQEYELVQTALHREVNKETS
>NC_003272.1|WP_010997025.1|3499901_3500894_-|PleD-family-two-component-system-response-regulator
MKNTVPESQCLILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIFQELQPDIVLLDAIMPDLDGFECCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQFHLQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYPDGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRDGCQQYIKQSSSPVYFLNAHHRLA
>NC_003272.1|WP_044521526.1|3498852_3499857_+|glycerate-kinase
MQVGQKEAEAAALADELRAKAFGITAANVEEMIQERSQLLQGVLPAFNQFCQNNLKIPPEQMFPVLWDLWLPLGMKIAAQHQQLKRPFIQGILGSQGTGKTTMSLVIQLILQHLGYRTLSLSLDDLYKTYSDRLVLLQQDPRLIWRGPPGTHDIDLGLNVLEQIRQGKSPVIVPRFDKSAHAGAGDRTKPDVITGVDILIFEGWFVGVRPIDPSLFNFPPSPILTDEDKAFARDMNLRLNHYLPLWEKLDSLILLYPTDYRCSLEWRKQAEQKMIAAGKTGMSNTQIEEFVNYFWRSLHPELFIQPLSQCAALVDLVVEIHPDHTFGQVYQPNW
>NC_003272.1|WP_044523071.1|3518350_3521692_-|response-regulator
MSMLQYPLDEFLANVTSCLETSTLAMVLEIFEQQQCDGRSRSVSKRSPALGDRLVIVNEQQCPVGLLHSGQLARKLLAATGNELFLNLQQPLSTFSQALIEPIQILPASHSVEQLGVFWRYHQAHNWEYVLVDGEGKFLGILDSVRLLAALAKEQTANHPHAPNSTYIDGVEAGLRGSPMGGGTPSLQEAAPTRRSLRDVARSLRETPPASRSDQLQPLVQLLERLPWPLMLQTSAGEVLTRNLAWWQQLGALKDPEGVRQQVEAILAATRIKQPEYVGQRSTTGTNHIQGYEQVGEELAQIPATGLLPLSPYEPTTSAKTSSSRCFLDSQMGTCTCVVEVQNGQERVWQFAKILLDNTDLKLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGELNERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPVPVSIRAVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSMELDLDQIVADELRLRQMLVHLLSNAFKFTEISGEIGLRVSHWEGWIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLHGGDVSFLSREGKGSQFTLLLPPSPPSSGFAESETVVEDIPTANTNTRNRVTNTGQNHNISSQRLVLVVEAVARYIEDLTDQLKTLGYRVVIARSGTEAVEKARRLQPKAIFLNPLLPLLSGWDVLTLLKSDGATRHIPVVVTATGAEKDIAFANRADGFLSLPVEQQSLTPLLDKLCGKPTVQSLGLGINEKNQSKKTLRILRLVDAELESINPHPSLQEHRVIEVDDLDQAELLARVWQFDVILLDVETSLAQTYLQQLTQHPRLAALPLVTCDVETTLAASQIPGLSVFPCLTPRVRDNDSELRKGKLDPLLSVLQIASGICYPPNIFVVDLAMLEDLPQTRRKPAKVSGTERKTVSRGEVAERGTEWFQALIQYLQTAGLKATMARCWAEVLQQIRHNSVDLLLICLGESAIHPEAVKALKALQDLPCNLPPILVIDQQLSRSQVTSRSKLTHAKKQESESIAGVAKAIATQIVPRSISMEDLLTQIHQTLTLNER
>NC_003272.1|WP_010997035.1|3522617_3522926_+|circadian-clock-protein-KaiA
MTQEVDQQILLQQLKSDYRQILLSYFTTDKALKEKIDKFINAVFCANIPVPEIIEIHMELIDEFSKQLRLEGRGDETLMDYRLTLIDILAHLCEAYRGAIFK
>NC_003272.1|WP_010997036.1|3523031_3523358_+|circadian-clock-protein-KaiB
MNKARKTYVLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSDRERVLIGLDLLYEELTEEDWEAQSNL
>NC_003272.1|WP_010997037.1|3523432_3524992_+|circadian-clock-protein-KaiC
MSEKEQQEQQNTSGNGVEKIRTMIEGFDDISHGGLPVGRTTLVSGTSGTGKTLLSLQFLFNGISFFDEPGVFVTFEESPSDIIKNAHIFGWNLQRLINEGKLFILDASPDPEGQDIVGNFDLSALIERLQYAIRKYKAKRVSIDSITAVFQQYEAVGVVRREIFRLVARLKQLNVTTIITTERSEEYGPVASFGVEEFVSDNVVIARNVLEGERRRRTIEILKLRGTTHMKGEYPFTITNDGVNIFPLGAMRLTQRSSNVRVSSGVKTLDGMCGGGFFKDSIILATGATGTGKTLLVSKFLQNGCVNNERAILFAYEESRAQLSRNAYSWGIDFEELESQGLLKIICTYPESTGLEDHLQIIKSEIAYFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTTDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREYNITADGPEIQDSFRNYERIVSGSPTRVSIDEKAELSRIVRRFEDKQGSDS
>NC_003272.1|WP_010997038.1|3525096_3527325_+|TolC-family-protein
MKGQHLFYSFLPGVTAAVLTTQPAVAEAMKVSSVQLVPSSSVVATQNSQTLLVDKSQTQLPNATVQIFPDIIPTSGVTTPNLQFSSSHSHPIILTENTGIDREQKSRQDEVKNFPLKSKLTLSQRLKQRRFSSQQKQINSGITKPKLVTKVVSTTSSTLLAGQQTFSPSYLQNPAPQEKLKTQLPMLLQTKANHVGAAKLLNISSCSPQTCQLTKLTGQQIAQGNTTQDPASVPVPDESTLVDTQAPTDTPVPNESAPTDTPVSTESAPADTQSPRVAPVQTESAPVNTQAPAGAVEVPQNLIPNANPLQFPTKPEEVTLKENQPITLTQALELARRSNRDLQVSLLELQRTQALLKEAQAALLPNLSVSSDVTRSQSASGQLQDELISKQGGVGNNDEPGTAFNSQAQLSYDLYTSGRRKAAIQEAEEQVRFNELDVERQSEEIRLSVTRAYYDLQQADEQVRIARSAVENAQASLRDAEALERAGVGTRFDVLRSQVNLANNTQQLTNNLSRQQTTRRQLATLLSVPQAVNISAADPVQLAGLWNQSLEQSIILAYQNRPELHQQLAQRNISEQQRRQALATLGPQVSFVANYNLLDQFDDGVGLTDGYSVGVRATLNLYDGGAARARASQARANIAIAETRFASQRDQVRFQVEQAFTNQRSNLENVQTANVALEQAREALRLARLRFQAGVGTQTDVINSENDLTQAEGNRITAILDYNRALAELQRAVTSRALISSQ
>NC_003272.1|WP_010997039.1|3527413_3527791_+|hypothetical-protein
MTTVTSQEIALFRSQLADDLGAMEALDLIEDCEGDLEDAAMTLAIKAGQEPERANAEWLDALARKWRAVICEPEFRSALLNGSITEMMAHLKTMPTFPNILATPVLIYILKQGVNDFCEPLDALK
>NC_003272.1|WP_010997040.1|3527928_3528435_+|hypothetical-protein
MNYLVAVLPDRIQAEAAYLALEREGINSTILGRGYKTADEFGLIDPNLQAKKQVQLMAYWLVPFGFFAGFTFSYITGLNTFAWAGEIGNHVVGGILGAASGAMGSVVVGGGVGLIIGGGDALPYRNRLDAGKYLVVVQGSETLSRQATRILRQFEPENIQGYADTSPV
>NC_003272.1|WP_010997041.1|3528548_3529328_+|photosystem-II-S4-domain-protein
MLPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIARAELPLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM
>NC_003272.1|WP_010997042.1|3529350_3530127_-|SDR-family-oxidoreductase
MSTALITGASGGIGKAFAQELAARQTNLVLVARSQHKLHQLAQELQQQHKIQVDVIAKDLTEIDAVADVFDITKSKGLTIDCLINNAGFGDYGDFAQSDRTRQIKIIQLNVLALVDLTHRFLPLMRQNRSGSIINVASIAGFQPIPYLSVYAASKAFIVSFSEALWAENRQYGVRVLVTCPGPTETDFFAEANFPQALVETTNKVMSSEEVVLKSLKALENWEPTVIISDTSTQLRSNVARLVPRKTLLSLLAKHFKA
>NC_003272.1|WP_010997043.1|3530310_3531807_+|hypothetical-protein
MYRLNQRAWKLLLAEVEKCSGNDQVSKIEREIVNKRLEKLRSEKGSPAQIDELRDTVVDIYPQFSEKILKQAAKANQAPGIFTKIKWTVILVGSSAGIVWVVNLPYPMIRWPVARTLPILLLPSYMSMDYHYRGVIQNLEQADQLINKATSSSDIEEGGKKVKEAQKHLDNLPVWFLGYYPQAYCSLFGCSWRFTLDEFEAARQRTARISAVVFQDKNALTPLNQGELAIELAKKQYEQATNSKDREQAIASWQAGIDQLEEIPAQTLAAKTAKAKLRAYTRDFENARIGSFIVAAQEFDLAAEKIKQTQPQTASELWQQAMNRINQVPLENPRYLEAQKLLAIYQGKIQGIVDPKSGKLIEGAKQFALAAAQASQNPPHTETQWRQIAKLWSTAIEQLENVRVEEPGYVEAQKLLATYQTNLGIIETRLQAETESQSSLKQANEQIQSLIAAPPSDPQRFQGQIQGIINQLNTIKPGTTAYPEGQRLLALAQKRLKQ

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Crispr_ID: NC_003272_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_16

3772540-3772637

Orphan

Consensus_repeat	Method
TTGGAATTTGACGACGTAGATGTTCTAGGCGCAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_16

>merge|NC_003272|16|3772540-3772637|CRISPRCasFinder
TTGGAATTTGACGACGTAGATGTTCTAGGCGCAGAGTTAATTTGTCTTGGCTGAGAAGCTGGGTTGGAATTTGACGACGTAGATATTCTAGGCGCAGA

>NC_003272|16|15|3772540-3772637|CRISPRCasFinder
TTGGAATTTGACGACGTAGATGTTCTAGGCGCAGA	GTTAATTTGTCTTGGCTGAGAAGCTGGG
TTGGAATTTGACGACGTAGATATTCTAGGCGCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010997261.1\|3761375_3762185_-\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|227751
NC_003272.1\|WP_010997265.1\|3764871_3766602_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_003272.1\|WP_044521632.1\|3775962_3779787_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|237951
NC_003272.1\|WP_010997262.1\|3762326_3763559_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NC_003272.1\|WP_126987011.1\|3764001_3764616_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223477
NC_003272.1\|WP_010997266.1\|3767070_3770091_+\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|379818
NC_003272.1\|WP_010997278.1\|3786994_3787903_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226728
NC_003272.1\|WP_010997273.1\|3781215_3781956_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792
NC_003272.1\|WP_010997259.1\|3760607_3760988_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997276.1\|3784285_3784999_+\|heme-oxygenase-(biliverdin-producing)	unknown	unknown	gnl\|CDD\|227685
NC_003272.1\|WP_010997260.1\|3761115_3761307_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997275.1\|3783425_3783761_-\|XisI-protein	unknown	unknown	gnl\|CDD\|370165
NC_003272.1\|WP_010997272.1\|3779783_3780932_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|381093
NC_003272.1\|WP_044521634.1\|3788538_3788751_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|378324
NC_003272.1\|WP_010997267.1\|3770157_3770895_-\|DUF1995-family-protein	unknown	unknown	gnl\|CDD\|370448
NC_003272.1\|WP_044521629.1\|3771123_3771384_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_011320507.1\|3763634_3763847_-\|DUF2555-domain-containing-protein	unknown	unknown	gnl\|CDD\|371217
NC_003272.1\|WP_010997270.1\|3773444_3775475_+\|protein-kinase	unknown	unknown	gnl\|CDD\|238121
NC_003272.1\|WP_010997274.1\|3781959_3783345_+\|cytochrome-c-biogenesis-protein	unknown	unknown	gnl\|CDD\|214387
NC_003272.1\|WP_010997277.1\|3785365_3786748_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010997261.1\|3761375_3762185_-\|DUF4351-domain-containing-protein	gnl\|CDD\|227751	COG5464, COG5464, Uncharacterized conserved protein [Function unknown].	3.95668e-23
NC_003272.1\|WP_010997266.1\|3767070_3770091_+\|zinc-dependent-metalloprotease	gnl\|CDD\|379818	pfam16313, DUF4953, Met-zincin. This is a family of uncharacterized proteins that carry the highly characteristic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.	3.5269e-102
NC_003272.1\|WP_010997262.1\|3762326_3763559_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NC_003272.1\|WP_044521632.1\|3775962_3779787_+\|GAF-domain-containing-protein	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	5.13072e-76
NC_003272.1\|WP_126987011.1\|3764001_3764616_-\|alpha/beta-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	6.46763e-62
NC_003272.1\|WP_010997265.1\|3764871_3766602_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.17178e-44
NC_003272.1\|WP_010997278.1\|3786994_3787903_-\|hypothetical-protein	gnl\|CDD\|226728	COG4278, COG4278, Uncharacterized conserved protein [Function unknown].	3.03787e-117
NC_003272.1\|WP_010997273.1\|3781215_3781956_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	2.19797e-45
NC_003272.1\|WP_010997276.1\|3784285_3784999_+\|heme-oxygenase-(biliverdin-producing)	gnl\|CDD\|227685	COG5398, COG5398, Heme oxygenase [Inorganic ion transport and metabolism].	1.27651e-128
NC_003272.1\|WP_010997275.1\|3783425_3783761_-\|XisI-protein	gnl\|CDD\|370165	pfam08869, XisI, XisI protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	6.61124e-57
NC_003272.1\|WP_010997272.1\|3779783_3780932_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.24846e-44
NC_003272.1\|WP_044521634.1\|3788538_3788751_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	3.86745e-11
NC_003272.1\|WP_010997267.1\|3770157_3770895_-\|DUF1995-family-protein	gnl\|CDD\|370448	pfam09353, DUF1995, Domain of unknown function (DUF1995). This family of proteins are functionally uncharacterized.	3.77549e-83
NC_003272.1\|WP_011320507.1\|3763634_3763847_-\|DUF2555-domain-containing-protein	gnl\|CDD\|371217	pfam10742, DUF2555, Protein of unknown function (DUF2555). This family is conserved in Cyanobacteria. The function is not known.	4.52068e-30
NC_003272.1\|WP_010997270.1\|3773444_3775475_+\|protein-kinase	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.50164e-113
NC_003272.1\|WP_010997274.1\|3781959_3783345_+\|cytochrome-c-biogenesis-protein	gnl\|CDD\|214387	CHL00177, ccs1, c-type cytochrome biogenensis protein; Validated.	0
NC_003272.1\|WP_010997277.1\|3785365_3786748_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0

>NC_003272.1|WP_044521629.1|3771123_3771384_-|hypothetical-protein
MVESNRNDKNNFFSARSRYYGRGKAENLTFNADLREFANRIGYVTALETSGKLSPDEACKQIKSLWKQLKRSKKALSISNDPPMTP
>NC_003272.1|WP_010997267.1|3770157_3770895_-|DUF1995-family-protein
MPELPSSLEDAIAQSREATKSALADGCNRIQVELLFPELKFMPVAEQFLPCLVEYESRLKVFFADAGAAALARRDWKDAAFQILDIGTGRIASIQSKIQPEDEIFLFISPTSVEVPQLEKICEIIGDRPAIFLNPRLEDAGTVGIGYTARQTRERFLNIIQSCYYLRPIDDETALFRSYPGDWEIWVENDGNWAKIANLPKKPSGDEIDLILMKGQPQTAGADAVPARKPSVFKSLQRFIKALNS
>NC_003272.1|WP_010997266.1|3767070_3770091_+|zinc-dependent-metalloprotease
MKKFTFYLILFNGLFLGIATANAKLSSTNIVNQNSQIIAIKTKPEKSITNQYPYISTPLHPAYTLFPSAAIKQPHQPQLQKPEQIWVINQNQQVKDQPFIWVVNNHKKAAEQPFLQVGKSTDKPDKKPATESKPEKKDDWESFDEVVKDTEKLDGLFTLYRHKEKNKIYLEIKPEQINKNYLATATLESGIGEQGIYSGLPLQDFLFYFQRVGKKLSFVVRNVNFRTREGDPQMRSLARSFSDSVLYSVDIKSIHPQRKTLLIDLGDLLLADLAGLSLFMGLTPNADQSSFGSAKTFPQNLEIESVLNFSSSGTNPNNETLYLTTVPDSRGFTLRVHYSLSQLPENNYRPRIADERVGYFITAYQDLSKEERNDPFVRYINRWHLEKKDPDSPLSRPKKPIVFWIDNAVPLQYRQAVKEGILMWNKAFLKAGFQDAVEARQMPDNATWDPADIRYNTIRWINTVDGYFAMGPSRVNPLTGEILDADILVDASLVRLLKSRYSTLVEPSQLSTRTSLSALMRNRGLCRNGLATTGNNNTQEKSPRPNGFLQRLSKLAGDYDLCYGIEAANQFAFGALSMSLLQNNAPNQEQLQQYINQYLRLIIAHEVGHTLGLRHNFRGSNLLSPEEMNNPEISRTKGLTSSVMDYIPPNIAPQGTQQGDYFPSMVGSYDEWAIQYGYTQTNATTPIAERPILQEIASQSYKPELSYSPDEDMYDLDPTADAWDHSSNVLVYSQWQLDNSRLMWESLNKRFPMPGESYSDLSDRFGSVLSNYFQNIFYTTKYIGGQSFYRLKAGEISANKLASRPNRLPFEPVPVEQQRQALKTLQKYIFAEDALNFPPDLLNKLAPSRWYHWGSFPQIGRLDYPVHDLILFLQAAVLRELLAGDRLTRLKDIELKSLPEKSLPLPELFDTLQTGVWTEVLKPKAGALKITSLRRGLQREYLDILIGMVLRREYVPEDARSLAWYKLKQLNEKLKSVNTNDEYTKAHLLETSDRIEKALNAPLQAN
>NC_003272.1|WP_010997265.1|3764871_3766602_-|pentapeptide-repeat-containing-protein
MDKKMSELPHVWKLLQNYVRGTRSTDRPTTKYVGSRSFLPLGKHQQKPAKDVNFSQVNLQKEILCERLQISLEAWTREDGKGKFSTSNSQLQQEIYDLLGNGALNSEIVEKVIELLILEAQFRPGLLFHRLEDFYQRWCRGEFIDAPPSENLPQRKLMEMAAQNQAMGLRQIDIYAGLNVLILLLELHRYAQQQEELRQQINFYPSSPPDTDSFFTSQLLRVINYSDAIEIGNFSNIVGEFLRGGNFQGAYLGNANLTGVNFSGANLSGAYLGDANLTGANFQDANLTGADFGDANLSSVNLSGANLSSADLSSANLTGANLSGANLQRADLSRADLSSSILNDGEFSHANLSGVNLRDAELRRANLSNAILFGANLSDANLNHADLSRADLCRADLSGADLTHATLNGTNLSDTILFSTNLSDAILEAADLSYAKLNGAKLNYARLNGAMFLGADLSGVDLTGVVLNDADLSGGILSEADLTGADLSDAILLGTDFSFANLNSANLSGSNLSGAILNGADLSSANLSYAILDDTDISEANLEEMTWGEIQQWEGVRGLETALNLPEALREKLGKR
>NC_003272.1|WP_126987011.1|3764001_3764616_-|alpha/beta-hydrolase
MQFTTVPPAKSQTPAGLVVTLHGWGANAEDVASLLPYFNLPDYQFVFPNAPYPYPYAPLGRSWYDLRQENMYEGLAESRELLKDFVLSLESSTGVPLSRTILSGFSQGGAMTFDVGSKLPLAGLVVMSGYLHPEAISPDNTNIPPTLILHGTRDEVVPLQAAVKARTTVESLGVPVQYQEFEAGHEINLEMLNVARNFIVNALV
>NC_003272.1|WP_011320507.1|3763634_3763847_-|DUF2555-domain-containing-protein
MKTLSISKKEIAAMTAAEVEELATRLEMDNYSNAFDGLNDWHLLRAIAFQRPELVESYIHLLDLEPYDEA
>NC_003272.1|WP_010997262.1|3762326_3763559_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MAHPQPQAENRKSRVLVAVGGGIAAYKVCEVVSNLFKSGVEVRVILTRSAQEFITPLTLSTLSRHPAYTDDDFWQSTHSRPLHIELGEWADLLVIAPLTANTLAKLTYGMADNLLTNTVLASNCPALLAPAMNTDMWEQLTVQRNWQQLLTDSRYHGIGTASGLLACDRVGAGRMAEPPEILAYTQSLLHTQGKRDLAGKRVLISAGGTREYLDPVRFIGNPSTGKMGLALAQAALHRGAKVTLVHGVASWVVPLGVQAIPIINAEEMQQVMLEYLPNADIIVMSAAVADVKPQDYSTEKLPKRSLPQSLPLEPVPDIVAQLGKLKQPHQRLIGFAAQTGDIVTPAKEKLYSKKLDAIVANPIDKADSGFGSDNNQAIFLDNQDRQVTIPPCSKLQLAHHLFDFVSNLTL
>NC_003272.1|WP_010997261.1|3761375_3762185_-|DUF4351-domain-containing-protein
MSFDNVCKALAEKYPKDFIRWLIGEESTNVKVLKTELSLEPIRADSVIFLQTGNLILHIEFQTLTQSNPAIPFRMLDYSVRLKRQYKCRIVQVVIFLQETDDEIAFTEEYVNETTRHRYRAVRMWEQDSSLFLGNLALLPLAPLCQTDSPRDLRISDRETRQNTAAYTEILAGLRFEKGLIRQLLSEDIMQESVIYQDILQKGEQKGEQKEAFRFLNRQLNRRFGEIDLSIVERIKILSTEELEALGEEFLSFSNVSDLVAWLERNTSS
>NC_003272.1|WP_010997260.1|3761115_3761307_+|hypothetical-protein
MPNPKGTPENLEPSKPKGEEPMTANLSFRVTESMKQAVKAQDDPAQFCRDAIQEKLDKLSSEE
>NC_003272.1|WP_010997259.1|3760607_3760988_-|hypothetical-protein
MFSRAELELLTIPQLNLLVKRYGLKPTGTGGQKASYITTLMAFPALALQQLEDGKGLKPPTFFGLETMGQILDEMATPTCEQSALLRLSFEGRRMDYPNRYQQERLLALYKAKNHLTEVIDLLRMM
>NC_003272.1|WP_010997270.1|3773444_3775475_+|protein-kinase
MLCCLNPNCSMPQNPDGQMYCQRCNTQLIPLLRGHYRIIKVLSDEGGFGRTYLSEDIDKLNELCVVKQFAPKVQEHSAMKKAVELFKQEAQRLQHLGEHHQIPTLLAYFEQDNYLFLVQQFINGNNLLQELRQGVVYNESTIVEFLLDLLPVLKYIHERGVIHRDIKPQNIIRRQSDGGLVLIDFGAAKQLKATMQTQLGTTIGSLGYTPIEQMQYGKAYPASDLFSLGATCFHLLTGINPSNLFVEQGYSWVESWQQYWNTSNSDRNEGEYLVKVLNKLLETDIQRRYQSADEVMNDLIKQRSLLSRLKTTIPKSAIFSRSWSASTSLTASTTKKQAWKLLNGRLKQQLLINTMSALLGLVGVGHLQSLPQLITKFSEISTQPYTLKGHASDVNSVAFSPNGEFLASGSDDKTIKVWNLKNKQKIHTLPGHSGWVWAIAFSPDGKTLASTGADKTIKLWNLATGKEIRHLKGHSQGVASVAFSPDGKTLASGSLDKTIKLWNPATGKEIRTLQEHSSGVANVAFSPDGKTLASGSWDKTIKLWNLTTSKVIHTLKGHSDLVMSVAFNSDSQTLASGSKDKTIKLWNLSTGKTIRTLRGHSDKVNSVAYVPRDSTVLASGSNDNTIKLWNLTTGEIIRTLKRDSGYIYSIVISPDGRNLASGGSAENIIKIWPMSW
>NC_003272.1|WP_044521632.1|3775962_3779787_+|GAF-domain-containing-protein
MFNCTTSLTPSELKSAIIRDPLIIKPETTVMDAIAQMSGVRVMCDTAKLDEVHLEARSSCVLIVAAGRLLGIFTERDVVKLCSQRRCLENLAIREVMIHPVVTLRESEFTDLFFAVNLLQQYRIRHIPILDEQERVVGLLTNESLRHTSRSVDLLRLRLVSEVMTCEVICATPDSSMLAIAQQMTENRVSSVMIVQLGQFQDKPQEIPVGIVTERDIVQFQALGLNLETCQVQTVMSSPIFAVRPDDSLRFVQQIMEQRLIRRLAVTGDQGELLGIVTQSSLLQALNPLEVYKLAQMLEEKVVRLETEKVQLLENRTVELEQLVADRTASLKAKAGREQIVSDISRQIRSSLSLQTILDTTVEQVRQLLGCDRVNIWYFETEWESIVMAESTTSSTSLLGERIEELCFQQHSAEIYRQGRIRVVPDIYTIEMTDCHREFLIRLQTRAKILVPLLCGDELWGLLNVSESQHPREWQTEEVELLQGLSVHLAIAIHQATTHQKLQEQLIALQQRSDQLRGSEQRYITLSQNLEAKIEERTAELQAREAQLQKTSDRLSISLKSGAIGCWDWDIVENNIFWDERMYELYGVTKTSDSRLVYDTWANRLHPDDRANIEVLVQQAILGQAEYDTEFRVIHPDGSIHFIKAYGVVVRDAEGNPQKMIGVHFDISDRKKSEEIIRQQVEREKLLREITQRIRQSLDLQTIFDIACQEICQVIQADRVGIFKFYPESNFNDGEFVAESVVKEFPSVIAIRVHDHCFGENYSSLYALGRSYVVDDIYHSDMTTCHTDILAQFHVRANVIMPLLCGAELWGLLCIHQCATTRHWQQSEIDFTQQLATQLAIAIQQASLVEQLQQELAERHQAELKLTQSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINNKQFKALETIERSSSHLLDLINDILDVAKIEAGQIKLDCTTISVANLCESSLVFIKQQALQKRIQVEIKIPFNLPDLFVDERRIRQVLINLLNNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSELGIGSCFTIELPCIPSTPASPDLIRDLLTTPTPELDSPTADEAVSLAPVILLAEDNKANIKTFSSYLSAKGYDILLATNGQQAIELATIHQPDLILMDIQMPGIDGLEAIRQIRLDPQLVNIPIVALTALAMTGDRDRCLQAGANDYLTKPVKLKQLATTIQQLLITTKK
>NC_003272.1|WP_010997272.1|3779783_3780932_+|hybrid-sensor-histidine-kinase/response-regulator
MNLPSILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNLFQPDLILLDVMMPGMDGIEVCQRIKAMPQWQPVPIIMVTALTAKEDLARCLQSGADDFISKPINALELRARLHSMLRIKQQYDKIQTLSNLQTSTIKVLESTLDELRGNLAATLPHELNTPLNGIVGSISILMANIENMDTAEIQELLGWVDLSARNLERLIKQLLTYLELELSTNQQQNIASESTHFSIAAIEAILQSHAPSVNRRDDLMFAIEEAEVSISARYLTIIIHELVDNALKFSRRGTTIKISSQIVAGMLNVYIHDFGRGMTAEQISKIGAFMQFERKTYEQQGIGMGLKLAKQTVESYGGLFSISSVYQQETTVHIALPIAYSRHSSW
>NC_003272.1|WP_010997273.1|3781215_3781956_+|cytochrome-c-biogenesis-protein-CcdA
MLETLQTQIYQLEKFANTLVSYQLTHLSLLSIGIIFAAGLLTSLTPCMLSMLPITIGYIGGYEAKSRWQAAAQSTWFALGLATTLAGLGVAAAMVGKVYGQIGIGLPIIVSIIAILMGLNLLEALPLQLPSFGDTNWISQDLPPGVRSYGIGLTFGLVASPCSTPVLASLLGWVANTQDLILGAVLLISYTAGYVTPLILAGTFTASIKKLLELRRWSGWINPVSGALLVGFGVFSLISRIPLGSF
>NC_003272.1|WP_010997274.1|3781959_3783345_+|cytochrome-c-biogenesis-protein
MTTDNSAPTASPWWSLPGKFLRREFLPVLTDLRLAIALLLIIALFSISGTVIEQGQSPAFYQSNYPEHPALFGFLTWKVIQVVGLDHVYRTWWFLSLLVLFGTSLTACTFTRQLPALKTAQRWKYYEEPRQFQKLALSAELDAGSVNSLSQILQNRRYKIFQEKDDILYARKGIVGRIGPIIVHIGIVTILLGSIWGAMTGFIAQEMVPSGETFQVKNIIDAGPLAAGQFPQDWSVRVNRFWIDYTPKGGIDQFYSDMSVLDNQGQEVDHKKIFVNQPLRYHGVTFYQTDWGISGVRVRLNKSPIFQLPMALLNTNGQGRIWGTWIPTKPDLSEGVSLLAKDLQGMVLIYDAQGKLVDTVRAGMSTQVNGVTLKVLDVVGSTGLQIKADPGIPIVYTGFGILMLGVVMSYFSHSQIWALQKGDRLYVGGKTNRAQVAFEQEVLDILERLNSQSATVINQQS
>NC_003272.1|WP_010997275.1|3783425_3783761_-|XisI-protein
MDKLVKYQELVKTLLTNYASDDVSDQDVEVQLILDTERNHYQWMNVGWQGLNRIYRCVIHFDIKDGKIWLQQNLTDRNPAEELVMMGVPREDIVLGLQAPYKRQYTDYGVA
>NC_003272.1|WP_010997276.1|3784285_3784999_+|heme-oxygenase-(biliverdin-producing)
MSSNLAVKLRAGTQKAHTAAENVGFMKCFLKGVVDRESFAKFLSNLYFVYSELEAAIQSHANNPAIAPIYFPELNRLASLEKDMVFYYGSEWRSLIAPSASAQAYIKHIRELSATAPALLIGHTYTRYMGDLSGGQMLQKIAQSTLKLSGYEGTSFYNFEQIPDKKAFKDQYRQALDSVPVDDATADRIVAEANSAFQFNMQMATDLEGNLIKALGQVVFNSLTSTLNPGSTEAAAS
>NC_003272.1|WP_010997277.1|3785365_3786748_+|oxygen-independent-coproporphyrinogen-III-oxidase
MVFVLPGVKFDLDMIKKYDTPAPRYTSYPPATQLTEGFSAADYQSAIAASNHRKSPISLYFHIPFCQSSCYFCGCNTVISNNKNIAKPYLEHLVREIKHTSNLIDPDRKVLQVHWGGGTPNYLDCDQVEFLWKHIHRHFNIDPQAEISVEINPRYVDQNYISFLREIGFNRISFGIQDFNSQVQKAVNRIQPEELLVNVMSWIKAAKFDSVNVDLIYGLPHQTLQTFRETVKKTVALDPDRIVVFNFAYVPWLKPAQKNIPLEALPQPQEKLEILKMTIEELTNSQYLFIGMDHFAKHNDELAIAQRNHTLQRNFQGYTTHAGTELFGFGATSISMLHDAYVQNHKQLKEYYQAVAGDALPVSKGIKLTTDDILRRDVIMCIMSNFYLHKQEIEDKYHINFDEYFSQEIAALKPLAADGLVSLSSKHIQVTEIGRLLVRNIAVVFDIYHHNQDKQFSRTI
>NC_003272.1|WP_010997278.1|3786994_3787903_-|hypothetical-protein
MVNSEGLASTGVQAMNTEQIELYERIQAFSLDKPDAPLSFSKRLARDNGWSLQYARQTIEEYKKFAFLAVAAGHPVTPSDQVDQVWHLHLTYTRSYWEEFCSQVLQTPLHHDPTLGGEAENQKFDDWYSETLESYERFFEVKPPLEIWSTPKDRFGRDLYFVRVNTQQNWVLAKLQVQKAATTSTAILFALILSGCYIGNFENNIDPFTGAILAVICIAAAFGVIRFLVGIVDLMKNPSLPRIRGGWGGSGCGSAGCGGWGSGWGWGDSSGHSSGESDGNDGGSDCGGGGCGGCGGGGCGGE
>NC_003272.1|WP_044521634.1|3788538_3788751_-|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MQITLNLDESLLNEAFQLTNLTTQEELMNLALQEFVRSRRKKNLLDLAGQIQFAPDFDYKALRETRYVAD

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Crispr_ID: NC_003272_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_17

3840120-3840737

Orphan

A:N

Consensus_repeat	Method
TGTTTC----------AATCCCTAATAGGGATTATATGGTGTTGCAAC	PILER-CR
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CRT
GGTTTC----------AATCCCTAATAGGGATTATATGGTGTTGCAACT	PILER-CR

8 spacers

The CRISPR arrays of NC_003272_17

>merge|NC_003272|17|3840120-3840737|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACAAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAAGTTGCAACACCATATAATCCCTATTAGGGATTGAAACCGGGCAATGCAGGAGTGCAACCCGACCAAGACCGGTTGCAACACCATATAATCCCTATTAGGGATTGAAACAAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTGGTTGCAACACCATATAATCCCTATTAGGGATTGAAACAAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGAGTTGCAACACCATATAATCCCTATTAGGGATTGAAACATCATTGATTTCATACACAACTCGCACAGCTATAAGGTTGCAACACCATATAATCCCTATTAGGGATTGAAACTTGATTTCGGTTATTGCGTTATCCCTCCTAAAAGTTGCAACACCATATAATCCCTATTAGGGATTGAAACCAACGACTAGGGCATGGAGTCTAGACCAGACGGTAGTTGCAACACCATATAATCCCTATTAGGGATTGAAACCTATTTCCTGAAACGATTTAGACAAGGATCTTTGTTGCAACACCATATAATCCCTATTAGGGATTGAAAC

>NC_003272|17|10|3840120-3840453|PILER-CR
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACA	AGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACC	GGGCAATGCAGGAGTGCAACCCGACCAAGACCG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACA	AGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACA	AGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACATCATTGATTTCATACACAACTCGCACAGCTATAAGGTTGCAACACCATATAATCCCTATTAGGGATTGAAACTTGATTTCGGTTATTGCGTTATCCCTCCTAAAAGTTGCAACACCATATAATCCCTATTAGGGATTGAAACCA	ACGACTAGGGCATGGAGTCTAGACCAGACGGT
AGTTGCAACACCATATAATCCCTATTAGGGATTGAAACCT	ATTTCCTGAAACGATTTAGACAAGGATCTTTG


>NC_003272|17|16|3840120-3840737|CRISPRCasFinder
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	ATCATTGATTTCATACACAACTCGCACAGCTATAAG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CTATTTCCTGAAACGATTTAGACAAGGATCTTT
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC

>NC_003272|17|9|3840120-3840737|CRT
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	ATCATTGATTTCATACACAACTCGCACAGCTATAAG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC	CTATTTCCTGAAACGATTTAGACAAGGATCTTT
GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC

>NC_003272|17|11|3840558-3840737|PILER-CR
	AGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACC	GGGCAATGCAGGAGTGCAACCCGACCAAGACCG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACA	AGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACA	AGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA
GTTGCAACACCATATAATCCCTATTAGGGATTGAAACATCATTGATTTCATACACAACTCGCACAGCTATAAGGTTGCAACACCATATAATCCCTATTAGGGATTGAAACTTGATTTCGGTTATTGCGTTATCCCTCCTAAAAGTTGCAACACCATATAATCCCTATTAGGGATTGAAACCA	ACGACTAGGGCATGGAGTCTAGACCAGACGGT
AGTTGCAACACCATATAATCCCTATTAGGGATTGAAACCT	ATTTCCTGAAACGATTTAGACAAGGATCTTTG
TTGCAACACCATATAATCCCTATTAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_044523109.1\|3841906_3842299_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NC_003272.1\|WP_010997315.1\|3830410_3830707_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997328.1\|3845773_3846715_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_003272.1\|WP_010997318.1\|3832497_3833760_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NC_003272.1\|WP_010997327.1\|3844811_3845753_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NC_003272.1\|WP_010997324.1\|3842359_3842791_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997313.1\|3828235_3829342_+\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|224993
NC_003272.1\|WP_010997317.1\|3832114_3832492_+\|sensory-rhodopsin-transducer	unknown	unknown	gnl\|CDD\|377776
NC_003272.1\|WP_010997314.1\|3829370_3830414_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_003272.1\|WP_010997326.1\|3843827_3844622_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_044521666.1\|3848275_3850618_-\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_003272.1\|WP_044521654.1\|3834073_3834373_+\|30S-ribosomal-protein-PSRP-3	unknown	unknown	gnl\|CDD\|235062
NC_003272.1\|WP_010997330.1\|3847389_3848193_-\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NC_003272.1\|WP_044521656.1\|3840823_3841735_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NC_003272.1\|WP_010997320.1\|3834496_3836176_-\|protein-kinase	unknown	unknown	gnl\|CDD\|238121
NC_003272.1\|WP_010997316.1\|3831312_3832098_+\|bacteriorhodopsin	unknown	unknown	gnl\|CDD\|320368
NC_003272.1\|WP_044521660.1\|3842919_3843474_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612
NC_003272.1\|WP_010997329.1\|3846743_3847307_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|236703
NC_003272.1\|WP_010997321.1\|3836735_3839801_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_003272.1\|WP_044521650.1\|3826185_3828111_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319849

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010997313.1\|3828235_3829342_+\|precorrin-8X-methylmutase	gnl\|CDD\|224993	COG2082, CobH, Precorrin isomerase [Coenzyme metabolism].	2.53896e-80
NC_003272.1\|WP_010997328.1\|3845773_3846715_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	1.02102e-79
NC_003272.1\|WP_010997318.1\|3832497_3833760_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	1.5337e-60
NC_003272.1\|WP_010997327.1\|3844811_3845753_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	1.27746e-28
NC_003272.1\|WP_044523109.1\|3841906_3842299_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	7.53894e-46
NC_003272.1\|WP_010997317.1\|3832114_3832492_+\|sensory-rhodopsin-transducer	gnl\|CDD\|377776	pfam07100, ASRT, Anabaena sensory rhodopsin transducer. The family of bacterial Anabaena sensory rhodopsin transducers are likely to bind sugars or related metabolites. The entire protein is comprised of a single globular domain with an eight-stranded beta-sandwich fold. There are a few characteristics which define this beta-sandwich fold as being distinct from other so-named folds, and these are: 1) a well conserved tryptophan, usually following a polar residue, present at the start of the first strand; this tryptophan appears to be central to a hydrophobic interaction required to hold the two beta-sheets of the sandwich together, and 2) a nearly absolutely conserved asparagine located at the end of the second beta-strand, that hydrogen bonds with the backbone carbonyls of the residues 2 and 4 positions downstream from it, thereby stabilizing the characteristic tight turn between strands 2 and 3 of the structure.	5.17525e-78
NC_003272.1\|WP_010997314.1\|3829370_3830414_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.16254e-55
NC_003272.1\|WP_010997330.1\|3847389_3848193_-\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	1.26232e-82
NC_003272.1\|WP_044521666.1\|3848275_3850618_-\|CHASE2-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	7.31554e-148
NC_003272.1\|WP_044521654.1\|3834073_3834373_+\|30S-ribosomal-protein-PSRP-3	gnl\|CDD\|235062	PRK02724, PRK02724, 30S ribosomal protein PSRP-3.	7.03339e-69
NC_003272.1\|WP_044521656.1\|3840823_3841735_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.83693e-33
NC_003272.1\|WP_010997320.1\|3834496_3836176_-\|protein-kinase	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.00578e-101
NC_003272.1\|WP_010997316.1\|3831312_3832098_+\|bacteriorhodopsin	gnl\|CDD\|320368	cd15240, 7tm_ASR-like, Anabaena sensory rhodopsin and similar proteins, member of the seven-transmembrane GPCR superfamily. This subgroup includes eubacterial sensory rhodopsin from the freshwater cyanobacterium Anabaena and its closely related proteins. Unlike other sensory rhodopsins (SRI and SRII), the Anabaena sensory rhodopsin (ASR) activates a soluble transducer protein (ASRT), which may leading to transcriptional control of several genes. Although ASRT was shown to interact with DNA in vitro, the exact mechanism of photosensory transduction is not clearly understood. Moreover, the regulation of CRP (cAMP receptor protein) expression by ASR has been reported demonstrating a direct interaction of the C-terminal region of ASR with DNA, suggesting that ASR itself may also work as a transcription factor. ASR belongs to the microbial rhodopsin family, also known as type I rhodopsins, comprising the light-driven inward chloride pump halorhodopsin (HR), the outward proton pump bacteriorhodopsin (BR), the light-gated cation channel channelrhodopsin (ChR), the light-sensor activating transmembrane transducer protein sensory rhodopsin II (SRII), and the other light-driven proton pumps such as blue-light absorbing and green-light absorbing proteorhodopsins, among others. Microbial rhodopsins have been found in various single-celled microorganisms from all three domains of life, including halophile archaea, gamma-proteobacteria, cyanobacteria, fungi, and green algae. While microbial (type 1) and animal (type 2) rhodopsins have no sequence similarity with each other, they share a common architecture consisting of seven-transmembrane alpha-helices (TM) connected by extracellular loops and intracellular loops. Both types of rhodopsins consist of opsin and a covalently attached retinal (the aldehyde of vitamin A), a photoreactive chromophore, via a protonated Schiff base linkage to an amino group of lysine in the middle of the seventh transmembrane helix (TM7). Upon the absorption of light, microbial rhodopsins undergo light-induced photoisomerization of all-trans retinal into the 13-cis isomer, whereas the photoisomerization of 11-cis retinal to all-trans isomer occurs in the animal rhodopsins. While animal visual rhodopsins are activated by light to catalyze GDP/GTP exchange in the alpha subunit of the retinal G protein transducin (Gt), microbial rhodopsins do not activate G proteins, but instead can function as light-dependent ion pumps, cation channels, and sensors.	4.79721e-118
NC_003272.1\|WP_044521660.1\|3842919_3843474_-\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	1.10656e-88
NC_003272.1\|WP_010997329.1\|3846743_3847307_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|236703	PRK10502, PRK10502, putative acyl transferase; Provisional.	2.81921e-117
NC_003272.1\|WP_010997321.1\|3836735_3839801_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.0335e-119
NC_003272.1\|WP_044521650.1\|3826185_3828111_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319849	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron. Bacillus subtilis ZosA/PfeT (previously known as YkvW) transports copper, it may also transport zinc under oxidative stress and may also be involved in ferrous iron efflux. ZosA/PfeT is expressed under the regulation of the peroxide-sensing repressor PerR. It is involved in competence development. Disruption of the zosA/pfeT gene results in low transformability. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NC_003272.1|WP_010997321.1|3836735_3839801_+|EAL-domain-containing-protein
MVFTRGKVYKNHLNLQKSKGFSTPIKDSISECEAANSGFTPEFQSYENSILDLQEIINLLAEINPFPVAIIGLESHQILFKNKLIDNPVFQQLIPDFLADSDLWTQLNSKLAKGDFISNLVLEIKSSDKTPFLAIISGKLVNYEHKRAAFLVFTDVNTVTGTSEEQQKDTLGKLELSHLIAHTSDSRRLPTIEHSPWTAPSNLMEQVLATISNGIVLTDANQPDNPIIYVNQAFETMTGYSAGEVIGQNCRFLQTNETDQPGLWELRSALREKKECHVIIKNFRKDGTEFWNELYIAPVFDSCEQLTHFIGVQNDITQHLQVLETLQQQKEQYRRIVETASEGIWLLNQNNETTFVNQQMATMLGYTIEEMLGASLFSFMDAEGLDMAQDLLSQRRQGIQEKHKFKFRCKDGSDLWAIISCTPLFDEQRNYTGALGMLTNISDVYDELRLRKQAEASLQESKERLDGILNSLEAVIWSIAADTFEMLYLNSAVVQVYGRSVCEFYDNPKLWFDLIHPEDQQRVSQSIKPLLANGSHELEYRILRQDGQVRWLYNHSHVIYDAVGQPIRIEGVATDITERKNMEEKLVYHAFYDDLTGLPNRVLFMDRLAQTIDQAKESPNDLFAVLFLDLDRFKVVNDSLSHLVGDQLLVSFAQRLQSCLQPEDTLARLGGDEFTILLSHIQSIDDATRIAEKIHQALKLPFNLSGYEVFTTVSIGIALSTNDYVQAADLLRDADTALYCAKEQGKAWHIVFDSTMYDRAVALLQLETDLRWAIARQELYVVYQPIVSVATGKITGFEALVRWQHPERGLISPVEFIPVAEETGLIIQIGQFVLRESCQQLKQWHLEFPEFQHLSINVNLSGKQFSQPYLVEEIEQLLQEFDLDPSSIKLEITESAIMASPGQAATILQQLKTLGIQLCIDDFGTGYSSLAYLHCFPIDILKIDRSFTKRIDSDSEQLAIIRAIVTLASNLEMSVVAEGVETVNQLVQLQLLKCDQAQGYLFSKPLSSDKVSLLLAAKIEF
>NC_003272.1|WP_010997320.1|3834496_3836176_-|protein-kinase
MSRGGFCQTYFAVDECQSPPVPYVVQKLHDNEQLLDSFQQKAQYIEQLSQNSQLPTLLAYFRDQDNYYFVQEFIAGASLAQVVQEEGAFHETQVWQLLTNLLPILKLMSDRQLIHGDIKPENIIRQLTPDSTNLVLVDFGHVQIVSRTDQITDVQGVGSPEYAAPEQITGQAVFASDLYSLGVTCIHLLTLVSPFDLFDIANDCWVWQQYLTTKISDRLTKILNKLIQKSVHQRFQSADEVMQVMGIEGKILHYPPPPSPWQCLHTLTGYSTNSLAISPDGNKLASGGDDKIIRLWELNTQKLLACFSGHSQAVTSVSFSPQGEILATASDDKTIKLWHLPTSSEVFTLNGHTNPVKSVSFSPNGQILASGSWDKQVKLWDVTTGKEIYALKAHQLQVSAVAFSPQGEILASASFDRTIRLWQITQNHPRYTLIKTLSGHTRAVLAIAFSPDGKILATGSDDNTIKLWDINTGQLIATLLGHSWSVVAVTFTADNKTLISASWDKTIKLWKVSTTEEIVTLASHLDSVCAVAVNPVTQVIASSSRDKTIKLWQLVIQQN
>NC_003272.1|WP_044521654.1|3834073_3834373_+|30S-ribosomal-protein-PSRP-3
MTKFILKILWLDENVALAVDQVVGKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRNRPMAEAQLKFPEVTFTGSA
>NC_003272.1|WP_010997318.1|3832497_3833760_-|two-component-sensor-histidine-kinase
MFNRSRRNLASWFTLAMGGILVVFAAAVYYVKVIDELEELDQLLYKKTTVMAASVRTDLDNRQRRVDLDKVPLLGTKVEPLSDSQLVYAGWYDEQKRLVQFFGETPSDRLLVASGFNTIKIHRELWLRRVTLPVYQDGLLIGYMQAAMPLTETEGALAEFRLVLAISVPITLGIIALTGWWLGGVAMQPIRQSYDYLQRFTADASHELRSPLSAIVSNAQYGLLTKSTDPETQRQRLQKIFDIAQSMSILVNDLLFLARYQGRIPIESLQTVDLKILLLQIQDDFLPHPETQHIKLLFTLPNHHVSVLGDANLLRQAVINLLSNACKYTPEGGQVELQLFTQSNWAVIQVVDNGIGIPQDDVPYIFERFYRVDKKRSRKTGGFGLGLAITQQIIQSHGGKINVHSAVNQGATFQVLLPLK
>NC_003272.1|WP_010997317.1|3832114_3832492_+|sensory-rhodopsin-transducer
MSLSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNAGDEDAHVEITIYYSDKEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQHTRLDSRQAENALLSTIAYANT
>NC_003272.1|WP_010997316.1|3831312_3832098_+|bacteriorhodopsin
MNLESLLHWIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGWINQTIDTFLFCLLPFFSKVGFSFLDLHGLRNLNDSRQTTGDRFAENTLQFVENITLFANSRRQQSRRRV
>NC_003272.1|WP_010997315.1|3830410_3830707_-|hypothetical-protein
MSTEKIYHLFRLWCKITLSTFVGLNALALLLLVLLSVLRVPSFNIGNDALWLLRWQYEQSTGFVIVFNPWILLTIAAVIGFVGVYLRRNSQQHRRRTK
>NC_003272.1|WP_010997314.1|3829370_3830414_-|AI-2E-family-transporter
MKLGQWLGLLALVISLYILWEIRQLVLLLFTSVVLAVAINQLVLRLQLAGIKRIWAVLLSVAIVVTFLVSAFLLILPPFIEEFRQLLVLLPTGINQIQQGINWLEERLVDSYLPEIPDIDRLLEQLQPWVTSLTQQAIALFSTSVTALLETLLVIVLTLMLLANPQPYRRVFIRFFPNFYRHRVDEILTRCATGLGNWTVGALMEMLFIGILSGLGLWILQVPLALAHAVLAGLLNFIPNIGPTLSVFLPMAIAFLDAPWKALAVLILYLVIQNVESYWLTPTIMAKQVALLPAVTLTAQIVFVTLFGALGLLLALPLAVVAKTWIQEVLFKDILDKWQPSNSSTFD
>NC_003272.1|WP_010997313.1|3828235_3829342_+|precorrin-8X-methylmutase
MNSGCLTIKELTQAVGGGITPRMVRHYHELGLLPQPERSPSNYRLYTQQDVIRLQRIVALKQQGFQLNHIRHILEMEPEADTNANFMAQLQQQYRSVMQQIAQLRQTASALEGLLGRDRHCQIMQAEVLAQLKLLEVETQVGLGGLAELWHGLDAEVHTHPEVFAESLQHILPDLSERSEIEQHLISQLVLACGDVSLVSFMRVSKNAIAASRQALSSACEIVVDIPTIAAAIDQTRLVHLGCKVTTLIDNPHINTAIEAEKEFWQHQQWRERLAKVSQGCIVVIGYAPSVLLEVCTLINQQKIQPSLVIGMPIGFSHAPAAKRQLMQQTSPFITIEGTIGGGLLAATALNALVESLIEKPNCHCYLS
>NC_003272.1|WP_044521650.1|3826185_3828111_-|heavy-metal-translocating-P-type-ATPase
MLYPQRIHQFTKEHTDTLAALLCGVLLFFGWFALHLGWLGFALLLLPAAYVIGGYESAREGLTTLIKEKELDVDLLMIVAALGAASLGLWRREYHLIIDGAILILIFAISGALEGYAMRHTERSIRSLMSLTPDTATIVNQTGEETIPISQLQVGDEIVVKPGELIPTDAVIVSGYSTINQAAITGESLPVEKTVGEEVFAGTLNGYGALTLKVHKPAASSLIQRVIRLVEQAQTEAPPSQQFIEVFERGYARVIVIAGILLATLPPFIWGWDWETTIYRALTFLVVASPCALMAAIMPTLLSGIANGARQGILFKNGAQLENIGKVRAIAFDKTGTLTTGQVQVSQVIAASNYTGASVLKVAAALEASSEHPIAQAIVQAAGNLNWVRATEVQAIPGQGIVGTADEQQVIVGNAAFVQKYVDKLPQELLEVAPSLEDEGKTVVWVAQGESNGDEYQVIGIIAIADMIRPEAAATITRLRKSGIEQIVMITGDNQRTAESVAQAVGIDQVFAELLPEDKLDVIRSLQQKYQIVAMVGDGINDAPALAQASVGIAMGVAGSDVALETADIVLMADKLEKIAAAMELGRRSHRIIKQNIVVALGFIALLLIGNFLGNINLPIGVIGHEGSTVLVTLSGLRLLK
>NC_003272.1|WP_044521656.1|3840823_3841735_-|helix-turn-helix-domain-containing-protein
MSEEKILSVDFTQEDAYTEILPRSPLVSSYHAQWQGLRLDVHQQPGHETPEHSPQQHVLTVSLDQQIVRLERILDGRLQYENIAKGDVAIIPAQTHHISRWQSETKFLVLSVEPAFFTRMVIEAGDLQKIEIKPRFAAPDPLVQQIGLALQTELESEHKGSSIYIESLTTTLCIHLLKHYCVTGGTILDDHHHKGLSHWKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFKQSTGFAPHQYVMNCRIERAKKLLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVYREQVKT
>NC_003272.1|WP_044523109.1|3841906_3842299_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MSYYVIYDGNCNLCVTLVKLLETLDQGKIFHYIPMQDEQAIAQWEITPQGCELGVILIDAKEPQRRWQGSDAAEEIGRLLPLGSIFVDAYRALPGVKWVGDRVYAQVRDNRYTLFGQRSCTYQSPYRTAQ
>NC_003272.1|WP_010997324.1|3842359_3842791_-|hypothetical-protein
MATKEEVKTYLAYWFQLGKKVVVGNEGTHLLPQPIFQGDRYSQEFEDCWQKILSPSTGDCYLEGTEETIAELLTPGWDMIACGRCAMPVPMRNLGMPPLSCPCGSLPGWPNTELPTPRSPISNQEQLKVIRNRLLGKLSTARQ
>NC_003272.1|WP_044521660.1|3842919_3843474_-|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MGQVILITGPARSGKSEWAEIWARESGKTVIYVATATSNPDDAEWQERIQQHQNRRPQDWITLEVPTTLSMTLADTKANSCVLVDSLGTWVANLLEQDEVSWASTVAEFLVTVQLVAADMVFVAEETGWGIVPAYPLGRKFRDRLGALVRQLGGMCDSVYLVTGGYALNLTALATRLPDSTDYE
>NC_003272.1|WP_010997326.1|3843827_3844622_+|hypothetical-protein
MKAGIKRIEATLHDLGTKDTAAIEVSDSTKRPLSFRISVAGKDTAESESNSPEQTQNLDIDTQFDHSPEQNLFPHHSSVQTFPAQEGLGKTPSLPKFKTPTFSSHRHGANPALAINMLQEIQEIVSGWQQELHNILQQIQDIYLEGPIVNGWLESNPGEAEAVGTATLRHAEVDRLMNYVEEICANDGKVPHQTPRTGYHLCGLDNSGRVWSRPCPADQLASVSMAIARYQKLRQFLGRKQYLETRLSQLAETLVVLHSHIQQT
>NC_003272.1|WP_010997327.1|3844811_3845753_+|glycosyltransferase-family-2-protein
MPDPQISAIICTHNRDTYLGAAIDSLLVQDFAGEFEVVVIDNGSSDRTREVVEQRSSDSRLKYVFEPTIGLSVARNTGAKFASAEILAYLDDDAVASTHWLQVLYAAYQNYPQLAIAGGKVTLLWPPDTQPPRWLSSGLAGNLGAYDLGDKVVYIQQPGLTPRGLNYSIRRTFLEEIGGFDPHLGRVGKNLLSNEELQMTELALTGGWQVAYLPEALVAHNVAPERLNRSWFLNRGWWQGISECYREQLSGKAGVGQLSRGGERLARGLYKAFRYFSNPAERFDNLVYAYGQIGYLNAVLQGLLFTANNKGSQ
>NC_003272.1|WP_010997328.1|3845773_3846715_+|glycosyltransferase-family-2-protein
MSSKVPVSVLIPAKNEQANLPACLDSLQRADEIFIVDSQSTDKSIEIAKNYGVNLVQFYFNGRWPKKKNWSLDNLPFRNEWVLIVDCDERIPNELWDEIAQVIKTEEYTGYYLNRRVFFLGKWIRYGGKYPDWNLRLFKHKLGRYENLHTEDVPNTGDNEVHEHVVMQGKVGYLKEDMLHEDFRDIYHWLERHNRYSNWEARVYYNLITGQDDSDTIGANLFGEAVQRKRFLKRVWVRLPFKPLLRFILFYVIRLGFLDGRAGYIYGRLLSQYEYQIGVKLYELRNCGGTLNTANTSNPIPPSLTQEIEKSTT
>NC_003272.1|WP_010997329.1|3846743_3847307_+|colanic-acid-biosynthesis-acetyltransferase-WcaF
MTNDKPFVDLRQYDQSWFDRGRSAWYILLWWLVQAIAFPLTPHFSSNIRCWILRLFGARIGKGVVVRPTARFTFPWKVTIGDYSWVGDDVVFYSLDEIHIGQHCVISQKSYLCTGSHDIQDPTFRLKVAGITIGNGAWVATDCFIAPGVQIGANAVIGARSSVFTSMPTGQVCWGSPCRPQHPRLKE
>NC_003272.1|WP_010997330.1|3847389_3848193_-|DUF928-domain-containing-protein
MSTLKPIQLLLALTIGYTSLLSANSWVLATTPVNPHNNNNISTAHKKTTFTQPPLPSSERRPGGRVRGGAKRGTCPSVEPQLTALVPFTQDAPTVTNVWGLTTKAHPTFLFYVPYAKDSAYPTEFVLQDQDTNIIYQKAIALPDKPGIISVSLPADAVGLAVDKQYRWFFTVECDQQKPAPPIYVEGVVQRVQLKPETTKQLETASPLQQVAIYAENGIWFEAANTLFQMLQKNPQDPAMQERWRKLLTSISLDDVVAKPMISRKLQ
>NC_003272.1|WP_044521666.1|3848275_3850618_-|CHASE2-domain-containing-protein
MAKLVVLKFGDGSFEQGFTVTLQIGEESDRPSTEITGKLPPCPEILLYYSRWQSSYLQLGNGYRLDADKIQVTNVSVTQDCHELALIVRARFNTWLQAQEFRPLREKWLEKLQPTDEIRVILQSENSHLQRLPWHIWDLLERYPKAEIALSSPSYELIHKRRTSSPTVNILAIVGNSQGIDTQADQAMLQNCPNADVSFLVEPQRKELTDYLWGKSWDILFFAGHSSSQGDDGIGRIYLNQTDSLSIGELKYALKQAIERGLQLAIFNSCDGLGLAKELADLNIPQIIVMREPVPDQVAQEFLKYFLLSFANGESLYQAVRHARERLQGLEDRFPCATWLPVICQNPAQKPLTWEELTEPPTQPIFNDVPPVSKKRGLKRTIFSSLLVTAAVYGLRFLGALQTGELQAFDQMMRSRPDEGPDPRILIVTIDDEDLAHQRRNNEYLKGTSISEKSLNLLLARISQYQPKAIGLDIYRDFHAEQPELISRLRQTENLIGICKGSDTSENIKGIESPPEIPQERLGFSDFVHDDDGVVRRHLLFMSQETASLCSASYAFSSQLAFRYLSSLGIQPKFTSGEVIKNLKLGDTVLHRLSSRMGAYQNIDANGGQILLNYRAAKKIAEQVTLTQLLSSPINPNAIKDRIILIGVVARGDFPDYWATPYGHLLDEQMPGVMVQAHMVSQIISAVLDGRSLLRVWLPGLEIAWIGVWAGLGGFLAWQWRLLPHLALAVGISSSVLYLLCLSLLVWGFWVPFVPSALSLVSTVTVVTIQNSKFLKEEGG

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Crispr_ID: NC_003272_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_18

4362255-4362578

TypeV-U5

A:N

Consensus_repeat	Method
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	CRISPRCasFinder
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAAC	CRT
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	PILER-CR

4 spacers

c2c5_V-U5

The CRISPR arrays of NC_003272_18

>merge|NC_003272|18|4362255-4362578|CRISPRCasFinder,CRT,PILER-CR
TGTTTTCACCATGTATTACCGGAAGGAGGGTTGCAACCTGACGGAGCAAGCTGATTTGGTAGAAGCTGTTAATCTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACGATCGCGCACAATATAAAGTTCTGAATATTCAAACTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACGTTAAATTTTGGATGCGATCGCCCCACCGCTTCCTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACGCGATGGATAAAGATACTAACTTTTTCTTCATCAGCTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACT

>NC_003272|18|17|4362255-4362578|CRISPRCasFinder
TGTTTTCACCATGTATTACCGGAAGGAGGGTTGCAACC	TGACGGAGCAAGCTGATTTGGTAGAAGCTGTTAAT
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	ATCGCGCACAATATAAAGTTCTGAATATTCAAA
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	TTAAATTTTGGATGCGATCGCCCCACCGCTTC
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	CGATGGATAAAGATACTAACTTTTTCTTCATCAG
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACT

>NC_003272|18|10|4362255-4362577|CRT
TGTTTTCACCATGTATTACCGGAAGGAGGGTTGCAAC	CTGACGGAGCAAGCTGATTTGGTAGAAGCTGTTAAT
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAAC	GATCGCGCACAATATAAAGTTCTGAATATTCAAA
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAAC	GTTAAATTTTGGATGCGATCGCCCCACCGCTTC
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAAC	GCGATGGATAAAGATACTAACTTTTTCTTCATCAG
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAAC

>NC_003272|18|12|4362328-4362578|PILER-CR
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	ATCGCGCACAATATAAAGTTCTGAATATTCAAA
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	TTAAATTTTGGATGCGATCGCCCCACCGCTTC
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACG	CGATGGATAAAGATACTAACTTTTTCTTCATCAG
CTTTCAACCCTCCCATTACTGGAAGGAGGGTTGCAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_096637171.1\|4361123_4361917_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_003272.1\|WP_126987840.1\|4373441_4373660_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997749.1\|4349313_4350519_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|236462
NC_003272.1\|WP_044521835.1\|4363024_4364944_-\|type-V-CRISPR-associated-protein-Cas12k	c2c5_V-U5	-	gnl\|CDD\|273793
NC_003272.1\|WP_044521832.1\|4355338_4355863_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997758.1\|4360601_4360868_-\|DUF3493-domain-containing-protein	unknown	unknown	gnl\|CDD\|371841
NC_003272.1\|WP_010997769.1\|4374062_4374503_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341155
NC_003272.1\|WP_010997765.1\|4368582_4370913_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NC_003272.1\|WP_010997756.1\|4357615_4358314_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_003272.1\|WP_010997624.1\|4370938_4371931_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_044523185.1\|4365026_4365479_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NC_003272.1\|WP_010997757.1\|4358562_4360221_+\|DUF1565-domain-containing-protein	unknown	unknown	gnl\|CDD\|284923
NC_003272.1\|WP_010997766.1\|4371938_4373393_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NC_003272.1\|WP_010997750.1\|4350643_4352140_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997755.1\|4356209_4357502_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NC_003272.1\|WP_044523181.1\|4352810_4354787_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341295
NC_003272.1\|WP_010997763.1\|4367526_4367841_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010997752.1\|4354829_4355282_+\|YlqD-family-protein	unknown	unknown	gnl\|CDD\|378550
NC_003272.1\|WP_010997768.1\|4373643_4374066_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|227860
NC_003272.1\|WP_044523188.1\|4365533_4367384_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|226003

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_096637171.1\|4361123_4361917_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.96832e-31
NC_003272.1\|WP_010997749.1\|4349313_4350519_-\|histidine-kinase	gnl\|CDD\|236462	PRK09303, PRK09303, histidine kinase.	0
NC_003272.1\|WP_044521835.1\|4363024_4364944_-\|type-V-CRISPR-associated-protein-Cas12k	gnl\|CDD\|273793	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam01385, and other proteins. [Mobile and extrachromosomal element functions, Transposon functions].	0.000774932
NC_003272.1\|WP_010997766.1\|4371938_4373393_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	4.82515e-104
NC_003272.1\|WP_010997758.1\|4360601_4360868_-\|DUF3493-domain-containing-protein	gnl\|CDD\|371841	pfam11998, DUF3493, Protein of unknown function (DUF3493). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.	8.09186e-34
NC_003272.1\|WP_010997769.1\|4374062_4374503_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341155	cd17266, RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) TRD2-CR2. Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) recognizes 5'... CAAGNNNNNRTC ... 3'. The RM system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example S.Sau1132ORF3780P-TRD1 recognizes CAAG/CTTG and S.Sau1132ORF3780P-TRD2 recognizes GAY/RTC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.67927e-16
NC_003272.1\|WP_010997765.1\|4368582_4370913_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NC_003272.1\|WP_010997756.1\|4357615_4358314_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.23675e-20
NC_003272.1\|WP_044523185.1\|4365026_4365479_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.09199e-23
NC_003272.1\|WP_010997757.1\|4358562_4360221_+\|DUF1565-domain-containing-protein	gnl\|CDD\|284923	pfam07602, DUF1565, Protein of unknown function (DUF1565). These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterized domains such as pfam00395 and pfam03422.	3.61188e-38
NC_003272.1\|WP_010997755.1\|4356209_4357502_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.78975e-165
NC_003272.1\|WP_044523181.1\|4352810_4354787_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341295	cd17640, LC_FACS_like, Long-chain fatty acid CoA synthetase. This family includes long-chain fatty acid (C12-C20) CoA synthetases, including an Arabidopsis gene At4g14070 that plays a role in activation and elongation of exogenous fatty acids. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	0
NC_003272.1\|WP_010997752.1\|4354829_4355282_+\|YlqD-family-protein	gnl\|CDD\|378550	pfam11068, YlqD, YlqD protein. The structure of a representative of this family has been solved (Structure 4dci) and found to form a tetrameric structure of prefoldin-like architecture with the beta-barrel core and helical coiled coil tentacles. This suggests that this family may act as molecular chaperones.	4.90228e-40
NC_003272.1\|WP_010997768.1\|4373643_4374066_+\|PIN-domain-containing-protein	gnl\|CDD\|227860	COG5573, COG5573, Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only].	3.05234e-71
NC_003272.1\|WP_044523188.1\|4365533_4367384_-\|DUF262-domain-containing-protein	gnl\|CDD\|226003	COG3472, COG3472, Uncharacterized conserved protein [Function unknown].	4.33761e-166

>NC_003272.1|WP_096637171.1|4361123_4361917_+|IS5-family-transposase
MRRKSYSTDLNDSEWAILAPLIPPAKCGGHPRTTDMREVCNAIYYHLKTGCQWDMLPGDFPPSSTVYSYYRKWQKRGIWEQMNHTLRDQVRQKMGKSTQPTAIAADSQSVKTTGKKGDVYGFDGGKKVKGRKRQTLVDSLGLLLKVVVSEANAGERLLAAYTLMELLEERPELLEKVEVIWVDSGYDGDKFALSVWLMIQAHVEVIRRTNQEFQVLPKRWVVERTFGWLNQYRRLSKDYERLPEMSEAAIYAVMTRIMLRRLVV
>NC_003272.1|WP_010997758.1|4360601_4360868_-|DUF3493-domain-containing-protein
MVEPNPKKRLNPEQYARLKAEMATPYRGLRQLFYIGFGASGFIGAFIFFFQLLAGRDVETALPNFALQVGVVGLMIFLWRWEQSRQKP
>NC_003272.1|WP_010997757.1|4358562_4360221_+|DUF1565-domain-containing-protein
MKHQGFNFSSLRNLFSVLSLPTGITALLVASSGFMLVPSGVNASAAPTLTAQVPTTAPVIYVNPTTGADTASGGTTAATPYKTITFALNQAQPGAIIQLAPGNYSSETGEQFPLILKPGVTLQGDESTRGQGVLITGGGFYTSRTFARQDITILANNDTTIAGITATNPNQRGTAVWVESSNPTIRNNTFTNSVREGVFVTGTGNPKIQGNIFIQNKGNGISVARSAQGEISNNLFQDTGFGIAIGGTSTPLVAENQIVQNQDGLYISETAKPVLRKNVIQNNKRDGIVATVNAQPDLGTSENPGGNLIRSNGRYDVNNATRTVRILAVGNDIDQKKIFGQVDFVAATVEPPPSGQGTAFTDVATNYWAKGYIEALASQNIIAGFPDGTFRPNEPVTRAQFATIITKALTPQAKRNAINFRDVSSNFWAFAAIQAAYRSQFVSGYPDGTFKPQQEIPRVQALVSLANGLGLTANNQNVISIYSDAGQIPGYAVGPVAAATTRQLVINYPTVSQLNPNRPATRAEIAAFVYQALVNAGRAQPLPSSYLVQVPQ
>NC_003272.1|WP_010997756.1|4357615_4358314_+|tetratricopeptide-repeat-protein
MKQKSQMETRFVKPLSCLTLSIITTIGILPPATAQETSPAKSACEQVLSNAEQKPLTKQVQKLAQFADPQQERSQMIQQANALFSQGDLPGAEENLCKFLKKYSDDAFGHFQLGNVFFRGKKVEAAISAYQEAIRLRSRYAVAYNALGIVYASQSRWSEAIVQYQKALEINPDYGDALTNVALALWQTNKKDEALASLEKALNIFKKQNRNEKANQVEQLLQRIKNSDDNLS
>NC_003272.1|WP_010997755.1|4356209_4357502_+|2-oxo-acid-dehydrogenase-subunit-E2
MSIHEIFMPALSSTMTEGKIVSWVKSPGDKVEKGETVVVVESDKADMDVETFYEGFLAHIIVEAGDSAPVGAAIAYVAETEAEIEAAKSLGSSGAAAATPPAAPQPVATTAAVGVPATSQNGSNHREGRLIASPRARKLAKELKVDLTSLKGSGPYGRIVADDIESAVGKVKQPATTPSAPTPTFTPAAPPAPRTPAPAPAPIAAAPGQVVPFNTLQNAVIRNMVASLDVPVFRVGYTITTDGLDKLYKQIKSKGVTMTALLAKAVAVTLQKHPLLNASYSDQGLVYHPDINVAVAVAMDGGGLITPVLKNADKIDIYSLSRTWKSLVDKARSKQLQPDEYTGGNFTLSNLGMFGVDTFDAILPPGQGSILAIGASRPQLVATGDGLFGVKQQMQVNITSDHRIIYGADAAAFLQDLAKLIETDAQSLTL
>NC_003272.1|WP_044521832.1|4355338_4355863_-|hypothetical-protein
MSGKLKLFLILLLSFFATAGAGVYLHQYQNPTLIVDNSSSTPQQLSVVKNSQEVVHDTERIQYKNIPLSGINSPLQGSDPKTLALNFLDDLTVAGGKRKVEITYPQHNQALVTVTQVSKSKDTSGEVKYRLEMNSFGRSLFASSPPVWQIVWVGSQISCGNGNQPLGNLTQRCD
>NC_003272.1|WP_010997752.1|4354829_4355282_+|YlqD-family-protein
MTDVSNPQLLLKRVVNVKVIVTPLWKEEVQQQLQAQINQLDQQLQQLDQEGQRAIAAIQKQSLQPPGPQTLQQIDNIQLQVNQKKSELLEQKNQMLQNLQQVQLLELDQEVNQFQMEGFFRVERGDNLISKMQVEIVIRDGVVEDIRGDI
>NC_003272.1|WP_044523181.1|4352810_4354787_+|long-chain-fatty-acid--CoA-ligase
MTNSQPGYSLLSDITKEQSKEIQRLVDYTNVESLPEIWPIAGKKFGETLALYNPHAKPEVKITYQQLADKIQLFASGLQALGVQAGDRISLIADNSPRWFIADQGIMTAGAVDAVRSSQAEKEELLYIVAHSGSTALVVEDLKTFNKLQDRLHDLPIQVVVILTDETPPTEQSLKVLNFLQLIEVGKNHTFVPVKRKRNELATLIYTSGTTGKPKGVMLSYSNLLHQVTTFRVVVQPKVGDTALSILPSWHSYERTVEYYLLSQGCTQIYTNLRSVKADLKQYKPNYMVAVPRLWESIYEGVQKQFREQPANKQRLIKFLLGMSEKYIKAQRIAQGTSLDHLHASSLERLIAKVLEFAFLPFHVLGQKLVYGKVKEATGGRFKQVISGGGALPKHIDTFFEIIGVQILQGYGLTETSPVTNVRRPWRNFIGTSGQPIPGTEVKIVDPETRQPLPVGKRGLVLLKGPQVMQGYYQNPEATAKAIDPQGWFDSGDLGWVTPDNELVLTGRAKDTIVLSNGENIEPQPIEDACLRSPYIDQIMLVGQDQRSIGALIVPNVEALAKWAESQNLVLSVEDDNLTSSSSQKINLESKMIQGLFRQELNREVQNRPGYRPDDRVGPFKLILEPFSIENGLMTQTLKLRRHVVTERYRDIINAMFA
>NC_003272.1|WP_010997750.1|4350643_4352140_+|hypothetical-protein
MRYIFLGLLLPFCVASLERNALALEYQSPSHNHTLAVESTDGNFYTKASYLLQQQLDLIVRIEQALVSPDANRMRAVRGQLIFQAKTVDSFLQRDKGNHFCNLANDSPDISESQTKIYCALSASSQELLKLAPLLDNLLSRRGELGLVRRLPLVSGERKLDPILTIAPIQQPNLGKPAAPLSTREPNLAPTNQQTTTVTSPSGLPIIGRVTKTAIVNYQPPIQPAIAPPDTALHILANAKRWLTAAQIAFPPETKFRDAQETARVLDRFAYGLDPQEPETYAKFLRLPRTGIFRVLPASAYQRPLNTLWNRLQPNVSERYSFPTLGNTQGGLNPSLTLQVVEENFQFQHQGIDYSFMVDVGDVPLEKLDNSLKVLPSSKKDFFLNYQPPKQLEALQADRRRFVTGKDQNWQQNQVILTHATAKLNHTYLVRSLQFQLPEIILNGQFANLDKSSYIDQLKQIRSSDMIIAFRPVRRRSDGSYTILWRVLNELPSPQIQN
>NC_003272.1|WP_010997749.1|4349313_4350519_-|histidine-kinase
MLKHDSMQVSQDQPIYSEAPLQLLLFVDGRPKSKQQVQRIRAYLKDLQAEYNFELQIIDVGQQPYLAEHFKLVATPALIKIHPEPRQILAGSNIITQLKNLWPRWQAAADTYAKLQEDLQERVDDNGRVAQPQSTINSVAVSAELLRLSDEIFNLKQEKEKLLEQLQFKDRVIAMLVHDLRNPLTAAAIAIETLQSNYNPDIGQFQRLKPALVVNLLRQARTQAKTIDKMIADLLQVGRGTDTELIIIPQKTEIGLLCLEVLGELRDRYTTKAQKVETDIPQDLPCVYADPERIRQVLINLLDNAIKYTPEGGTISIAGLHRTTQKVQFSIGDTGPGIPSDNRERIFENHYRLERDEAKEGYGIGLSLCQRIIRAHYGQIWVDSNPHGGAWFHFTLPVYPS
>NC_003272.1|WP_044521835.1|4363024_4364944_-|type-V-CRISPR-associated-protein-Cas12k
MSQKTIQCRLIASESTRQKLWKLMAESNTPLINELLQQLSKHPDFEKWRRNGKLPSTVVSQLCQPLKTDPSFTGQPSRFYISAIHIVDYIYKSWLTIQKRLQQQLDGKLRWIEMFNSDVELVEISGFSLEAIRTKASEILAITTPESDPKTLLTKRGKTKQSKKSSASNPDRSLSRKLFDAYQETDDILSRSAISYLLKNGCKLNDKEENPEKFAKRRRKVEIQIQRLTDKLTSRIPKGRDLTYSKWLETLFTATTTVPENNAEAKRWQDILLTRSSSIPFPVVFETNEDLVWSTNEKGRLCVHFNGLSDLIFEVYCDSRQLYWFKRFLEDQQTKRKSKNQHSSGLFTLRNGRLAWQQGEGKGEPWNIGHLALYCCVDNRLWTAEGTEQVRQEKAEEITKFITKMKDKSDLSETQLAFIKRKESTLTRINNSFDRPSKPLYQGQSHILVGVSLGLEKPATIAVVDAIAGKVLTYRSLRQLLGDNYELLNRQRRQQRSLSHERHKAQKSFSPNQFGASELGQYVDRLLAKEIVAIAQTYKAGSIVLPKLGDIREIVQSEIQAIAEAKCPSSSEIQQKYAKQYRVNVHQWSYGRLIQSIQSKAAQIGIVIEEGKQPIRGSPQDKAKELALYAYSLRLARRS
>NC_003272.1|WP_044523185.1|4365026_4365479_+|MerR-family-transcriptional-regulator
MEGKFYTSTEASEITHCSRRQLQYWREKGVIVPTVNSSGKGRNVYYSKADLLALTVMEQLLSTGLNFDLCYAALQTLRKQEPWLFDESVPEEKMKRLMLLPTRSPEQPLQLAEFDKQAALEALCHGQTVIPFWSDRIHQQLRENLKSFSS
>NC_003272.1|WP_044523188.1|4365533_4367384_-|DUF262-domain-containing-protein
MNSISTFDITKYFLLDVLKDIKNGRIQLPDFQRDWVWDDTRVRRLLTSISLAYPIGVVMMLQQSIQSRQFKPRLVDGVLKPENHEPNLLILDGQQRLTTMFMVLLSELPVIIKDQKSQKIIKKWYYLDIKKCLNSECDRRSAIIALPESKIARIFTGGLIDCSTPEKEYEALLFPLSKVFFFSEWRSKFSKYWQYDPQKLELIDILELEILKKFEHYQIPVIQLRDSLPKEAVCQVFEDTNTSGCDLNYFDLMSSSYCTSDFSLRDDWKQRENRFQSLKVLRKLRSTDFVQAVTLVAGYAKRIEATKQGWNIDKLPGVAGDRAEVLKLTKEEYQKWADPITKGFEESARFLHNQKIFDADDLAYPIQLVILSAIFTVLGERSRSFQVRSMLERWLWCGMFGEIYTRWYEARAGRDVIEVPDWLAGGSLPLTIVQADFSFDRLIGVRKRYGAVYQGLAALLRREGAIDWCTGEEINDVIYFEEKIDSHHIFPVAWCRKKGIDPKKYNCLINRTPLSAKTNKKIGSKAPSVYLEEFELCGTSATRLDEILRSHAISPKTLRRDDFEGFFQMRANNLLTLIGKAMGKSLSFESSEDFVREHNHENGRQYKLHPEIIKKY
>NC_003272.1|WP_010997763.1|4367526_4367841_-|hypothetical-protein
MQTGRDSHENNYSIDLLRLLPLEPTEYCRRWVRQEAGRNYRKACINAIAQVTGTSPKTVKDWGTNFRRRPKYVTRILRQADLLNQFRQLVAKGIVALPPDFPQE
>NC_003272.1|WP_010997765.1|4368582_4370913_+|DEAD/DEAH-box-helicase-family-protein
MSEVIDKKSLSERDICTKFITPALTNRGWNISTQIREEVTLTKGRVIVRGKLTSRGEQKRADYVLYHKPGVPLAVIEAKDNNHSVSAGMQQAIATGELIDVPFIFSSNGDAFMMCDCTVTEGQREREIPLNQFPTPEELWQKYCDWKGIDLHIQPIVAQDYYPSPDKKQPRYYQQIAINRTIEAIAKGENRILLVMATGTGKTFTAFQIIWRLWKSGAKKRILFLADRNILVDQTRVNDFKPFGSKMTKIKQRQIDTSYEIYLCLYQAVTGNEEAKNIYRQFSPGFFDLIIIDECHRGSASEDSAWRDILAYFSSATQIGLTATPRETEEVSNSLYFGDSIFTYSLKQGIEDGFLAPYKVIRIDFDTDLSGWKPKPGQRDKYGKEIPDQVFNQRDFDRTLVLEKRTELVARIISDYLKSSDRFAKTIVFCETTDHAERMRVALVNENADLMAENSRYIMRITGDDAQGKAELDNFIDPESKYPTIVTTSELLTTGVDAKTCKLIVLDQRILSMTKFKQIVGRGTRIDEDYGKMFFTIIDFKKATQLFADPEFDGEPVQIYQPKPVDPIVPPDNGDDEVIIDGEITRKQKREKYVIADEEVSVAFIREQYHGKDGKLITESIKDYTRKTVSQEYASLDAFLKKWHSTEQKQAIIQELQELGVPLEALEKEIGKGFDPLDLICHVVFDQPPLTRKERANNVRKRNYFSKYSEQARKVIDALLDKYADEGIEDIEKLDVLKVHPFDKVGTPIEIIQLFGSRKEYLNVLQQLKTQLYEIA
>NC_003272.1|WP_010997624.1|4370938_4371931_+|hypothetical-protein
MDDPIKYIDSSIKGLQDKLSTSNSVLDIEVQAELSHILSIYRRLKTAFLIAKVQDNKNKLEHIEAIAPNLNLAISALQVNSNKVLARNIRRDAEYFIRRIENPVTAFFVNNFFKFLYSTETHTKVVIGLFLALPIHLLAPIVLAYILSTSNLYLKPLFKEQLTKPISSENLVEAQKPEVKTQIKLTEYEFYEASVLLVLSAMSGATGSVVSIMLRLDQYGNPRYKETLLPIFVGAFKPAIGAFLGIFVFALINSTLLPITISKDEEKPINRWLAFLAITFVVGFSERLANDVVSQAERIVPGRGASQEKSETSASQLSAPTEEDKENDKS
>NC_003272.1|WP_010997766.1|4371938_4373393_+|SAM-dependent-DNA-methyltransferase
MSISTTIKTIQDIMRKDAGVDGDAQRINQLVWMIFLKVFDAREEEYELLEDNYKSPIPEGLRWRNWAADSEGITGDGLLDFVDNALFKTLKELRTTATDARGQMIGKVFEDAYNYMKNGTLIRQVINKLNEVDFNKKDQKKQFSEIYEKILKDLQSAGNAGEYYTPRAVTKFIVDRIKPQLGEIVFDPACGTGGFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPYNLCITNLILHGIDVPEAEHDNTLARPLRDYSPHERVDVIITNPPFGGMEEDGIEDNFPATFRTRETADLFLVLIAHLLKEGGRGAIVLPDGTLFGEGVKTRIKEKLLQDCNLHTIVRLPNGVFNPYTGIKTNLLFFTKGEPTETIWYYEHPYPAGYKSYSKTKPIRFEEFAPEQEWWDNREENEFAWKVSIADLKANNYNLDIKNPHKVDVEHADLDEMLADHQKLMAELGEVRSKLKFELIEALNDQVDKTIE
>NC_003272.1|WP_126987840.1|4373441_4373660_+|hypothetical-protein
MEVVEFQGIVKDGVIQIPEIYKGELDGESVKVIVMKKVRKTAAVDIIAELIEHPVEFEWPPLNREEIYDRNS
>NC_003272.1|WP_010997768.1|4373643_4374066_+|PIN-domain-containing-protein
MTAIHENGYFLDSNIWIYALANNQDINKRNIACRLIDAEGVIISTQVINEVCLNLIKKSSFTEQQITQLIEAFYKGSHIISFNRDILVNSSNLRSRYKLSFWDSLIVACALAAGASILYSEDMQDGLVVDSQLQIVNPFK
>NC_003272.1|WP_010997769.1|4374062_4374503_+|restriction-endonuclease-subunit-S
MKVDTFFQNFELLTDAPNAVVKLRDLILQLAVRGKLVFQNNNDEPAKILLNRIKAEKQETYSQKRVKTIKSLPPICEHETHFKKPQNWEWCRLGDIIHISSGNYLPSHKMADDGQIPVYGGNGITGYHDQNNINKPTLRHVRLNIL

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Crispr_ID: NC_003272_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_19

4682741-4682812

Orphan

A:N

Consensus_repeat	Method
CCCGGCTTGTAGCGAATGGCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_19

>merge|NC_003272|19|4682741-4682812|CRISPRCasFinder
CCCGGCTTGTAGCGAATGGCGTGAGCCATCGCTGTGGACGGTTAGTTTTCCCGGCTTGTGGCGAATGGCGTG

>NC_003272|19|18|4682741-4682812|CRISPRCasFinder
CCCGGCTTGTAGCGAATGGCGTG	AGCCATCGCTGTGGACGGTTAGTTTT
CCCGGCTTGTGGCGAATGGCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_044521962.1\|4681827_4682691_-\|cyanophycinase	unknown	unknown	gnl\|CDD\|226693
NC_003272.1\|WP_010998024.1\|4684072_4684570_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NC_003272.1\|WP_044523208.1\|4678708_4678879_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|224739
NC_003272.1\|WP_010998020.1\|4678949_4681655_-\|cyanophycin-synthetase	unknown	unknown	gnl\|CDD\|273950
NC_003272.1\|WP_010998013.1\|4672521_4673322_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NC_003272.1\|WP_010998029.1\|4689348_4689513_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998025.1\|4684651_4686439_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173865
NC_003272.1\|WP_010998032.1\|4690924_4692637_-\|flavin-reductase	unknown	unknown	gnl\|CDD\|223503
NC_003272.1\|WP_010998027.1\|4687482_4687689_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998026.1\|4686520_4687309_+\|nickel-pincer-cofactor-biosynthesis-protein-LarB	unknown	unknown	gnl\|CDD\|224605
NC_003272.1\|WP_126987210.1\|4682827_4683046_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998031.1\|4690044_4690785_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998016.1\|4675267_4676152_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|178539
NC_003272.1\|WP_010998015.1\|4674471_4675185_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NC_003272.1\|WP_010998017.1\|4676298_4676901_-\|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT	unknown	unknown	gnl\|CDD\|180961
NC_003272.1\|WP_010998023.1\|4683303_4684062_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NC_003272.1\|WP_010998012.1\|4670925_4672434_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NC_003272.1\|WP_010998028.1\|4687821_4689207_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NC_003272.1\|WP_010998018.1\|4676995_4678387_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_003272.1\|WP_010998014.1\|4673407_4674196_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_044521962.1\|4681827_4682691_-\|cyanophycinase	gnl\|CDD\|226693	COG4242, CphB, Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism].	4.10546e-161
NC_003272.1\|WP_010998024.1\|4684072_4684570_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	1.22417e-99
NC_003272.1\|WP_044523208.1\|4678708_4678879_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|224739	COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion].	3.0394e-17
NC_003272.1\|WP_010998020.1\|4678949_4681655_-\|cyanophycin-synthetase	gnl\|CDD\|273950	TIGR02068, Cyanophycin_synthetase, cyanophycin synthetase. Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in E. coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. This model makes the designation as cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. [Cellular processes, Biosynthesis of natural products].	0
NC_003272.1\|WP_010998013.1\|4672521_4673322_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	1.72616e-50
NC_003272.1\|WP_010998032.1\|4690924_4692637_-\|flavin-reductase	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	0
NC_003272.1\|WP_010998025.1\|4684651_4686439_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173865	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_003272.1\|WP_010998026.1\|4686520_4687309_+\|nickel-pincer-cofactor-biosynthesis-protein-LarB	gnl\|CDD\|224605	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only].	2.78566e-141
NC_003272.1\|WP_010998016.1\|4675267_4676152_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|178539	PLN02953, PLN02953, phosphatidate cytidylyltransferase.	2.14359e-57
NC_003272.1\|WP_010998015.1\|4674471_4675185_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	4.30726e-18
NC_003272.1\|WP_010998017.1\|4676298_4676901_-\|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT	gnl\|CDD\|180961	PRK07402, PRK07402, precorrin-6Y C5,15-methyltransferase subunit CbiT.	2.43831e-141
NC_003272.1\|WP_010998023.1\|4683303_4684062_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	7.63511e-144
NC_003272.1\|WP_010998012.1\|4670925_4672434_+\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NC_003272.1\|WP_010998028.1\|4687821_4689207_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NC_003272.1\|WP_010998018.1\|4676995_4678387_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.55573e-63
NC_003272.1\|WP_010998014.1\|4673407_4674196_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.52095e-97

>NC_003272.1|WP_044521962.1|4681827_4682691_-|cyanophycinase
MPQLQAKSLEMRTPQATKTAVLVIGGAEDKVHGREILRTFFGRAGASKAYITIIPSASREPAIIGGRYIRIFEEMGAEKVEILDIREREQCESSQVKASLEACSGVFLTGGDQLRLCGVLSDTPVMEIIRQRVRGGQLTLAGTSAGAAVMGHHMIAGGGSGETPNRSLVDMATGLGLIPEVIVDQHFHNRNRMGRLISAVAAHPDRLGIGIDEDTCAVFERDGWLQVLGKGSVTIVDPTELTHTNEPHVGANEPLTVHNLRLHILSYGDRFHLYQRTVLPAVHRISS
>NC_003272.1|WP_010998020.1|4678949_4681655_-|cyanophycin-synthetase
MRILKIQTLRGPNYWSIRRHKLIVMRLDLETLAETPSNEIPGFYEGLVEALPSLEGHYCSPGCHGGFLMRVREGTMMGHIVEHVALELQELAGMHVGFGRTRETATPGIYQVVIEYLNEEAGRYAGRAAVRLCQSIVDRGRYPKAELEQDIQDLKDLWRDASLGPSTEAIVKEAEKRGIPWMQLSARFLIQLGYGVNHKRMQATMTDKTGILGVELACDKEATKRILAASGVPVPRGTVINFLDDLEEAIEYVGGYPIVIKPLDGNHGRGITIDIRSWEEAEAAYEAARQVSRSIIVERYYVGRDHRVLVVDGKVVAVAERVPAHVIGNGRSTVAELIEEINQDPNRGDGHDKVLTKIELDRTSYQLLERAGYTLNSVPPKGTICYLRATANLSTGGTAVDRTDEIHPENVWLAQRVVKIIGLDIAGLDIVTTDISRPLRELDGVIVEVNAAPGFRMHVAPSQGIPRNVAGAVMDMLFPNEQSGRIPILSVTGTNGKTTTTRLLAHIYKQTGKVVGYTTTDGTYIGDYLVESGDNTGPQSAHVILQDPTVEVAVLETARGGILRSGLGFESANVGVVLNVAADHLGIGDIDTIDQLANLKSVVAESVYPDGYAVLNADDRRVAAMAEKTKANIAYFTMNSESELVRKHIQKGGVAAVYENGYLSIVKGDWTHRIERAEQIPLTMGGRAPFMIANALAASLAAFVQNVSIEQIRAGLRTFRASVSQTPGRMNLFNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFVTLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGLDMAPANGLVVILPESVSRAIKLIKLRGLVKEEIQQQNSSTTVIDNQNGVASSSVINTLL
>NC_003272.1|WP_044523208.1|4678708_4678879_+|twin-arginine-translocase-TatA/TatE-family-subunit
MFGLGWPEIAIIVVVAVVIFGPKKIPELGSALGKTLRGFKDELKTPSEDTNPEEEK
>NC_003272.1|WP_010998018.1|4676995_4678387_+|serine/threonine-protein-kinase
MLEEIFHTRYEIQQLLGKKAGRRTLLAKDVVTGELVIVKLLVFSSDFEWDDLKLFEREAETLKSLSHPHIPRYLDYFEVNPPTIKGFALVQSYISAQTLEQYLQSGRSFSESDIKQIATAILEILIYLHGLYPPVIHRDIKPSNILLGERSGNNVGQVYLIDFGSVQTALGAEGGTRTVVGTYGYMPPEQFGGRTVTASDLYSLGATLIYLVTGTHPADLPQKDFRIQFESVANLSPGLAAWLKTMTEPSVERRFSSPQQALKALESSHLPTQSQLVINRPDWSKIQLTKDADSLEILIPPVGFQPSMVFMGLFAIAWNSFILFWTIGALSAPFPVNIPFALFSLPFWGAGYFMAYTFLLSLFGRNHLRLDREKITFTHELFGFKFHRPRPASRESITKLVYIARHLTKDSEGAKTQVPAQLEIWAGVQKYQLGTNTAIQSETELEWLAQELSDWLNIPIQRE
>NC_003272.1|WP_010998017.1|4676298_4676901_-|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT
MPSQLWPYVTPGIPDEFFEHLPGIPLTQREIRLLLISQLRLEPDSVLWDIGAGTGTIPVEVGLLCPKGQIIAVERDEEVANLIKRNCDRFDVKNVEIVEGSAPECLHNIKIAPHRVCIEGGRPIQEILQAVWQYLPSSGRVIATAANLESLYAISQSFSQLQARNIEVVQSAVNRLETRGFSQTFAAVDPIFILSGEKLD
>NC_003272.1|WP_010998016.1|4675267_4676152_-|phosphatidate-cytidylyltransferase
MPWSRIISGIVAIALALVAVLLGGWYFTIMLAIVVFLGQQEYFDLVRTRGILPAAKTTLFLSQVLLVTCTLDSNLVDAVMPIAGTFICFYLLFQPKMATIADVSASIMGLFYVGYLPSYWVRLRSIGSTSISNLPLGGYWPGSLTDILEERNFASLPQGFKITVLTFLCIWAADIGAYTIGKFFGKTRLSDISPKKTVEGAVFGISASLAVALAGAFYLHLPQFLLTGTILGLLIGLASLLGDLTESMLKRDAGVKDSGQLIPGHGGILDRTDSYIFTAPLVYYFVTLILPLLS
>NC_003272.1|WP_010998015.1|4674471_4675185_+|DUF2993-domain-containing-protein
MPENNSQKRGLNKIRIITNVLTTALKLWLRSQVSQISDLEVEIKASDRQLLSGCIPWVSIFASHAIYQDLHITQIKLAAENIQINIGQVLKGQPLQLLQVVPVSGELIIDETDLNTSLSSGLLSTALNDVLDKLLPEYWSKSKHILWQKIILDHQQIKLNAILTSASEPIPLEICLHLELLSGQELQLSQIRVQQNQVTLLEDSNTHNVDLGSDVDIQELKLTPGQLVCRGQVNVNP
>NC_003272.1|WP_010998014.1|4673407_4674196_-|rRNA-pseudouridine-synthase
MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPEKDIITVDGKSVSAQRHPRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGPGLHPVGRLDADSTGALILTNDGDLTFRLTHPSHSIPKTYQVLVKGHPPKAVLEMWREGVLLDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEIRSLQEQVKNIPTKRINFQNPQP
>NC_003272.1|WP_010998013.1|4672521_4673322_-|helix-turn-helix-domain-containing-protein
MKWLRRKQDEQPQLSLDQQRAEKLAELGAQLWASRQEKGLSLEEMVAITRIPRRLLQAIEEGNLNDLPEPIYIQGLIRQFADALGFHGVELSSQFPVVSEQKKPQFVGESKSMGLLRPIHLYLLYILVIVCSVSGLSQLLNNAALRATDNENTPQINKETVADSQQKLIKTEPVSDRSSREKNHQSVQIGVTLKASSWIRVVADGKTEFEGTLPEGSHRVWKAQEQLTVKTNNAGGVLMSVNQQAAKKMGELGEEEEIKIAAQPGL
>NC_003272.1|WP_010998012.1|4670925_4672434_+|4-alpha-glucanotransferase
MPFIRSSGVLLHPTSCPSRFGIGDLGLEAYKFIDFLEKSYQQYWQVLPLGPTGYGNSPYMSYSALAGNHLLISPEKLLDEGLLSDEDFAHLPNFPNEKVDFDQVAPIKIQLLKKACENFKTKASPLQQKGFAGFCETKSYWLDDYALFMALKDTKDSSSWHTWEPALAKREPDALEKVQRQLTDEIFYYKFIQYEFFRQWSELKSYANMRGIEIIGDIPIYVAHDSADVWANPDIFCLDEETGEVALMAGVPPDYFSATGQLWGNPVYNWEELQKQDFKWWVQRFEAMLDYVDVIRIDHFRGFEAFWTVPQGEETAMNGEWVTAPGEELFDAIKQKLGKLPVLAEDLGVITPEVEALRDKYEFPGMKVLQFAFGSDPGNPFLPFNYSRNFVVYTGTHDNDTTVGWFNTANDYEKNNLLLYLGCISPEGIHWDLIRLALSSVANQAIVPLQDILGLGNEARMNFPSIAEGNWAWRYDFAVLTDELSDRLKILTKLYGRAPQGK
>NC_003272.1|WP_126987210.1|4682827_4683046_-|hypothetical-protein
MTCSLLAQMGKLIPSARGEPEPQALMSQSGKSGQVKNKALALGTRDIQIMRLCVYMLQCPQEKSKVQTSSGS
>NC_003272.1|WP_010998023.1|4683303_4684062_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRFDIVTLFPDCFTSVLSSGLLGKALAKQIAQVNLVNPRDFTTDKHRKVDDEPYGGGVGMLMKPEPIFSAVESLPILERREVILMSPQGQTINQPLLRELVSNYEQLVVICGHYEGVDDRVLHLVTREVSLGDFILTGGEIPAMALINGVVRLLPGTVAKTESLTAESFEEGLLDYPQYTRPANFRGWKVPDVLLSGNHAAIAQWRYEQQIKRTSDRRPDLLEKWQQEKKQGSREQGAREAGGVGGEITTDD
>NC_003272.1|WP_010998024.1|4684072_4684570_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MTMSIRIGNGYDIHRLVSDRALILGGVHIPHELGLLGHSDADVLTHAIMDAMLGALSLGDIGHYFPPTDPQWAGADSLVLLSQVNELIRTQGWRIGNIDSVVVAERPKLKPHIKTMRDKLADILQLEPNQIGVKATTNEKLGPVGREEGICAYAVVLLVSSDEIS
>NC_003272.1|WP_010998025.1|4684651_4686439_+|ABC-transporter-substrate-binding-protein
MPYTNNLISLIKRFWILIILAAFTAVTVAACNPSNFRSSAAQIPQLVTSILSDPKTFNYPLSSESPNVFGLIYEGLISENYDTGEVEPALAESWTISEDKLKIVFTLREGLKWSDGQPLTVDDVVFTYNDIYFNEAIPTDIRDIMRIGESRKLPTVRKVDTRRVEFAVPEPFAPFLRSATGAAILPAHALRESIKTKDSEGKPTFLQKWGVDTPPDQIVVNGLYKLERYDTSERVVFRRNPYYWRKGPKGESQPYIERLVWQIVESTDTSLLQFRSGGLDSIGVSPDYFSLLKVQEKQGNFKIYNGGPAAGTTFILFNLNKGKRDGKPLVDPVKSRWFNTVEFRQAVAYAVDRQTMINNIYRGLGQTQNSPISVQSPYYLSPEEGLKVYDYNLEKAKQLLLKTGFKYNAQNQLLDSEGNRVRFTLLTNAGNKIREAMGSQIKQDLSKIGIQVDFTPLAWNTYTDKLANTLDWEASMLGLTGGLEPNDGANVWNPEGGLHMFNQKPQAGQKPITGWEVAPWEAKIGQLYIQGARELDETKRKAIYAETQKITQENLPFIYLVNPYSLSAVRDRFAGIRFSALGGAFWNLYEIKIVK
>NC_003272.1|WP_010998026.1|4686520_4687309_+|nickel-pincer-cofactor-biosynthesis-protein-LarB
MTQPEALRSLLEAVANGKVTPDKALHSLKDLAYEPVGEFAKIDNHRHLRTGFPEVIWGPGKTPEQIVQIMEVMRQRNPVVMATRIEPSVYTLLQPKIRDLRYYELARICAIIPPTIEPRFAGIISILSAGTADLPVAEEAAVTAELSGFRVQRLWDVGVAGIHRLLSNRHLIESASVLIVVAGMEGALPSVVAGLASCPVIAVPTSVGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAVLAGQILRTAEKLRLASQES
>NC_003272.1|WP_010998027.1|4687482_4687689_+|hypothetical-protein
MNYFNDLIFETVGYFSVNFPMLAQNVTDPNVVGQIQKTWNHFIQTGQVWALLIGLVIGYMFRNLTKYG
>NC_003272.1|WP_010998028.1|4687821_4689207_+|argininosuccinate-lyase
MTEKQTWSQRFESALHPAIALFNASISFDIELIEYDLTGSQAHAQMLAHTGIISPAEGEQLVAGLEQIREEYRQGKFQPGIDAEDVHFAVERRLTEIVGDVGKKLHTARSRNDQVGTDTRLYLRDQILQIKTQLREFQRVLLDIAEKNVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDWERLGDVYRRVNISPLGCGALAGTTFPIDRHYTAELLQFERIYENSLDGVSDRDFAIEFLCAASLIMVHLSRLSEEIILWASEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVFGHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKACLEAMTILLQEGLEFRTQRLAEAVTQDFSNATDVADYLAARGVPFREAYNIVGKVVKTSIAAGKLLKDLTLEEWQQIHPKFADDIYEAISPRQVVAARNSYGGTGFAQVSKAVSAARKEIGE
>NC_003272.1|WP_010998029.1|4689348_4689513_-|hypothetical-protein
MAKRRNPKKEKALRNQAYARKFRKRTTTGRMQRRFQQRTPKSEEEEGAAAVDAE
>NC_003272.1|WP_010998031.1|4690044_4690785_+|hypothetical-protein
MIKYRQWSKYLAVLSSAAVLGTDLAIPSAIAQTTIKSSVGKAVTFTCNDSEATIKAKKGPKVTIGLTNIYIGYQQVSSNNKDPRIIRFDNGFRTWCRSDYETTGDDGTGYGLYWDGGSNLYGVFTSTGTQTGNDFRRFATQGWLTSYGRGGGAKVAVIARINPSNGSVTSATYLSAIKMDGKSNSLAVTSLAWNGTNLTVKADSWWSPRRRDKTRMNCSGTSPFKYTVAFAANLRSVSSASAVNCS
>NC_003272.1|WP_010998032.1|4690924_4692637_-|flavin-reductase
MSQTKPRDVQVLPIGTNTTVLRSRSWTRLRFEIEYALAKGTTANSYLIQGDKLALIDPPGETFTQIYLDALQKRLDVTEINYVILGHINPNRAATLKALLEIAPQITFVCSNPGAINLRGVLENPDLPMLIMRGEETLDLGKGHNLQFIPTPNPRYADELCTYDPQTEILYTDKLFGAHICGDQVFDEGWATINEDRRYYYDCLMAPHARQVETALDKLADFPTRLYATGHGPLVRYGLIELTHAYREWSQQQTSADLTVALIYASAYGNTATLAQAIARGITKAGVAVESINCEFADPEEIRAAVEKSAGFVMGSPTLGGHAPTPVQTALGIVLSTATNNKLAGVFGSFGWSGEAVDLIESKLKDAGYRFGFDSIRVKFKPNEVTLQMCEEAGTDFAQALKKARKVRTQSVPATNVEQAVGRIVGSLCVVTAKQGEISSAMLASWVAQASFNPPGLTIAVAKDRAVETLTHTGNKFVLNVLKEGNHLGLMKHFLKPFGPAQDRFADVATAEAENGSPVLQDALAYLECSVQNRMESGDHWLVYATVENGKVLNQDGVTAVHHRKSGNHY

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Crispr_ID: NC_003272_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_20

5646379-5647145

Orphan

A:N

Consensus_repeat	Method
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	CRISPRCasFinder
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	CRT
CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC	PILER-CR

10 spacers

The CRISPR arrays of NC_003272_20

>merge|NC_003272|20|5646379-5647145|CRISPRCasFinder,CRT,PILER-CR
GTTTATATCCCCTTTCGGGGTGAGGCGATCAAAAAGCTTTATCTTTTGCCTGGAGATAAACGGCATTCGCTATCGGGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGGAGAGACTGGAAACAATTTCTATAGCGATGTCGGATGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGTCAATCATCTTTGCATTATATCCTGAAATTACAAGATGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGCTCCCTTAGCCACTCTAGGATTTGTGACTGTTGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGATGATTATCGAGGAATCTCGAAAATAGGACGTCGAGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGAAGCGACCATCGCTTTTTGCACGAACAGCAGATGGAACGGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGTCCTGCTCCAAGCATTAGTCCTTCGGAGATTAAAAACGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGTAACTACTGCAAGCGTTGTGCAAGCAGCAATACCTGCGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGTGCACATTGATATAAACGAAGCTAAAAAAGCCTCTACCAATATAAGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAGTCTTGCATACAAAGCTGCATTTCTAGATGACAAGTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG

>NC_003272|20|19|5646379-5647145|CRISPRCasFinder
GTTTATATCCCCTTTCGGGGTGAGGCGATCAAAAAG	CTTTATCTTTTGCCTGGAGATAAACGGCATTCGCTATCGG
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	GAGAGACTGGAAACAATTTCTATAGCGATGTCGGAT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCAATCATCTTTGCATTATATCCTGAAATTACAAGAT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	CTCCCTTAGCCACTCTAGGATTTGTGACTGTT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	ATGATTATCGAGGAATCTCGAAAATAGGACGTCGA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	AAGCGACCATCGCTTTTTGCACGAACAGCAGATGGAACG
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCCTGCTCCAAGCATTAGTCCTTCGGAGATTAAAAAC
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TAACTACTGCAAGCGTTGTGCAAGCAGCAATACCTGC
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TGCACATTGATATAAACGAAGCTAAAAAAGCCTCTACCAATATAA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCTTGCATACAAAGCTGCATTTCTAGATGACAA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG

>NC_003272|20|11|5646379-5647145|CRT
GTTTATATCCCCTTTCGGGGTGAGGCGATCAAAAAG	CTTTATCTTTTGCCTGGAGATAAACGGCATTCGCTATCGG
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	GAGAGACTGGAAACAATTTCTATAGCGATGTCGGAT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCAATCATCTTTGCATTATATCCTGAAATTACAAGAT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	CTCCCTTAGCCACTCTAGGATTTGTGACTGTT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	ATGATTATCGAGGAATCTCGAAAATAGGACGTCGA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	AAGCGACCATCGCTTTTTGCACGAACAGCAGATGGAACG
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCCTGCTCCAAGCATTAGTCCTTCGGAGATTAAAAAC
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TAACTACTGCAAGCGTTGTGCAAGCAGCAATACCTGC
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TGCACATTGATATAAACGAAGCTAAAAAAGCCTCTACCAATATAA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCTTGCATACAAAGCTGCATTTCTAGATGACAA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG

>NC_003272|20|13|5646455-5647145|PILER-CR
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	GAGAGACTGGAAACAATTTCTATAGCGATGTCGGAT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCAATCATCTTTGCATTATATCCTGAAATTACAAGAT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	CTCCCTTAGCCACTCTAGGATTTGTGACTGTT
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	ATGATTATCGAGGAATCTCGAAAATAGGACGTCGA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	AAGCGACCATCGCTTTTTGCACGAACAGCAGATGGAACG
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCCTGCTCCAAGCATTAGTCCTTCGGAGATTAAAAAC
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TAACTACTGCAAGCGTTGTGCAAGCAGCAATACCTGC
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TGCACATTGATATAAACGAAGCTAAAAAAGCCTCTACCAATATAA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG	TCTTGCATACAAAGCTGCATTTCTAGATGACAA
GTTTCCATCCCCTTTCGGGGTGATGTGATCGGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010998854.1\|5629259_5631098_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NC_003272.1\|WP_010998857.1\|5633624_5634740_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_003272.1\|WP_010998868.1\|5648263_5648935_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NC_003272.1\|WP_010998867.1\|5647524_5648079_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|334450
NC_003272.1\|WP_190449752.1\|5639127_5640903_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_003272.1\|WP_010998874.1\|5656391_5656583_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998853.1\|5628087_5629149_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_003272.1\|WP_010998858.1\|5634736_5635453_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_003272.1\|WP_010998876.1\|5658888_5660316_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NC_003272.1\|WP_010998856.1\|5632501_5633512_-\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NC_003272.1\|WP_010998875.1\|5656757_5658599_-\|SWIM-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|227059
NC_003272.1\|WP_010998860.1\|5635711_5636422_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_003272.1\|WP_010998865.1\|5645250_5645793_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_003272.1\|WP_010998873.1\|5654598_5656185_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998869.1\|5649033_5650506_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_003272.1\|WP_010998878.1\|5661593_5661842_+\|DUF5340-domain-containing-protein	unknown	unknown	gnl\|CDD\|375096
NC_003272.1\|WP_044522318.1\|5652123_5653788_+\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_003272.1\|WP_010998864.1\|5641381_5645068_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|273933
NC_003272.1\|WP_010998877.1\|5660423_5661314_+\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NC_003272.1\|WP_010998855.1\|5631209_5632442_-\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|379182

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010998854.1\|5629259_5631098_-\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_003272.1\|WP_010998857.1\|5633624_5634740_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.22979e-62
NC_003272.1\|WP_010998868.1\|5648263_5648935_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	9.16449e-58
NC_003272.1\|WP_010998867.1\|5647524_5648079_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	4.37351e-11
NC_003272.1\|WP_190449752.1\|5639127_5640903_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.50465e-177
NC_003272.1\|WP_010998853.1\|5628087_5629149_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.4285e-117
NC_003272.1\|WP_010998858.1\|5634736_5635453_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.14378e-90
NC_003272.1\|WP_010998856.1\|5632501_5633512_-\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NC_003272.1\|WP_010998875.1\|5656757_5658599_-\|SWIM-zinc-finger-domain-containing-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	0
NC_003272.1\|WP_010998860.1\|5635711_5636422_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.405e-63
NC_003272.1\|WP_010998865.1\|5645250_5645793_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.29354e-40
NC_003272.1\|WP_010998876.1\|5658888_5660316_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_003272.1\|WP_010998869.1\|5649033_5650506_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.48789e-159
NC_003272.1\|WP_010998878.1\|5661593_5661842_+\|DUF5340-domain-containing-protein	gnl\|CDD\|375096	pfam17275, DUF5340, Family of unknown function (DUF5340). This family of unknown function can be found in Cyanobacteria.	2.78575e-37
NC_003272.1\|WP_044522318.1\|5652123_5653788_+\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	2.75296e-27
NC_003272.1\|WP_010998864.1\|5641381_5645068_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|273933	TIGR02025, Magnesium-chelatase_subunit_H, magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	0
NC_003272.1\|WP_010998877.1\|5660423_5661314_+\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	6.36049e-142
NC_003272.1\|WP_010998855.1\|5631209_5632442_-\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|379182	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring). This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59.	3.13943e-49

>NC_003272.1|WP_010998865.1|5645250_5645793_+|transposase
MDYRRAKIEGGTFFFTVVTHNRREFLCEPENIRLLRQAFRQVIAQYPFTVDAIVILPNHIHCLWTLPPGDSNFSNRWRLIKNYFTRHCSIKYQETISTSRQNKGELAVWQRRFWEHQIKNEVDFTHHFNYIHYNPVKHGYVKAPKDWQYSSFILYVQRERYNIDWGTGEDIKFSQDIGNE
>NC_003272.1|WP_010998864.1|5641381_5645068_+|magnesium-chelatase-subunit-H
MKRIVLIAGFESFNADLYRKAAFLANSRCADLDIRVFSDRDITSKRLEVEAALQGADVFFGSLLFDYDQVVWLRDRVSQIPIRLVFESALELMSLTKLGAFAIGDKPKGMPKPVKFILDKFSNGREEDKLAGYISFLKIGPKLLKFVPVQKVQDLRNWLIIYGYWNAGGTENVAALFWTLAEKYLDLKIGDIPPPIETPNIGLLHPDYPGFFESPREYLAWYQKREEAGVQGAGCRGEKNPVVGILLYRKHVITKQPYIPQLIRRFEDAGLIPLPIFINGVEGHVAVRDWMTTDYEFQQRQIGNIATPSLSPEAVKVDAIVSTIGFPLVGGPAGSMEAGRQVEVAKRILTAKNVPYIVAAPLLIQDIHSWTRQGVGGLQSVVLYALPELDGAIDTVPLGGLVGEDIYLVPERVQRLIGRVKSWIALRQTPAAERKIAIILYGFPPGYGATGTAALLNVPRSLIKLLHALKDQGYNVGDIPEDGEELIRLVKETDEEMERWEKNKPFPSSANTVNSRKLEKWLGYLRTSRIEKQWKSLTGSGIKTYGDELHVGGVQLGNVWIGVQPPLGIQGDPMRLMFERDLTPHPQYAAFYKWLQNDLQADAVVHFGMHGTVEWLPGSPLGNTGYSWSDILLGDLPNLYIYAANNPSESILAKRRGYGVLISHNVPPYGRAGLYKELITLRDLIAEYREDPNKNYVLKEAICKKIVDTGLDTDCPFEDAKRLGIPFTPENIRMFSAHAFDDYLVKLYEYLQVLETRLFSSGLHTLGEAPNQEELASYLEAYFGEEQAKQPEMEKQITDLLMQTTDELTNLLRGLNGEYIPPAPGGDLLRDGAGVLPTGRNIHALDPYRMPSPAAYERGREIAQKIIAQHLQEHHTYPETVAVLLWGLDAIKTKGESLGILLELVGAEPVKEGTGRIVRYELKPLAEVGHPRIDVLGNLSGIFRDSFVNIIELLDDLFQRAADADEPEDQNFVRKHALALKAQGVENASARLFSNPAGDFGSLVNDRVVDGNWESGEELGNTWQSRNVFSYGRQDKGQARPEVLQQLLKTSDRIVQEIDSVEYGLTDIQEYYANTGGLKKAAEKQSGKKVTASFVESFSKDTTPRNLEDLLRMEYRTKLLNPKWADAMASQGSGGAYEISQRMTALIGWGGTADFKDDWVYDQAADTYALDPEMAEKLRQANPEAFRNILSRMLEAHGRGLWQADTDKLDKLRQLYELTDEQLEGVTV
>NC_003272.1|WP_190449752.1|5639127_5640903_-|ABC-transporter-ATP-binding-protein
MQAIGRVLESLRNYRLISLGALFSLLLLTVANAVTPQLFRWGIDQGIVKKDLQIVLYSAAWMVVAAIARGVFNFGQSYLAEAASQGVAYELRNKIFSKIQNLSFSYHDQSQTSQLLTRVTSDIEQIRTFIGTSLIQVISGIVTLISAAVILLIMNWQLAIITLTVVPMSGWLMARFITQNDRLFRQVQEQLSDLNAVLQENLIGIRVVKAFVRESAERSRYTGLNDALVTANMKTIRAIRNTFPFIFLLSNLVTLAVFGYGGAQVIGNTFSIGELVAFNAYLILILQPILLIGFAAPAIAQAAASAQRVYEVVDAAVEIRDRADAIPFETCGGRITFENVSFRYPGAATEALKDVSFETKPNELIAILGMTGSGKSTVMNLIPRFYDVTKGAIRIDGQDVRDFTLNSLRKHIGIVFQETTLFSGTIRENIAYAKPKASLEQVMEVAKTAQIHDFIMSLPDGYETIVGERGVGLSGGQKQRIAIARTLLTDYSILILDDSTSAVDAKTAAEIQAELDSMMRQKACVTFVVAQRISTVKNADRIFLIDKGRLAAQGTHEELMQTSPLYGAILESQVKKRQEAEERGSRGAGET
>NC_003272.1|WP_010998860.1|5635711_5636422_-|NYN-domain-containing-protein
MTNSSFTKGKNSYHHQAEEPHLPTKIQIKNGSKHEVSRQREPRNDVSITNDLNRGRVAIFIDGANLFQAALQLGIEIDYLKLLCRLTAGSRLLRAFFYTGVDMSRPTPTRQRTNDKQQGFLFWMRRNGYRVVTKELQVTDNNKKPNLNVEIAVDMITLAPHYDTAVLVSGDGDLAYAVNAVSSTGVRVEVVSLRTMTNDCLIDVADYFIDLDSIKQYIQKDSHLGYGYRTLSNSNL
>NC_003272.1|WP_010998858.1|5634736_5635453_-|response-regulator-transcription-factor
MDILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGLEVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRSLRQGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWNRTQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFEDSPVISA
>NC_003272.1|WP_010998857.1|5633624_5634740_-|HAMP-domain-containing-histidine-kinase
MIKKGWRWTKSLPLASRLFVSHLVVMIVGLISLVIISKVSSPRFFVLHLERLESEGVNLINVRADLVQGFEIAWRSSTIWSVLVGSTAAGGLSYWVSKRIMQRLTEMEQITQQFAAGHLQARLPLSDIPELNRLGTSFNRMAASLEGVEARRRELIGDMTHELRTPLTVVRGYLEELADGEIEPSPEVYRRLAKETRRLERLVNDLQELSKAEAGYLPIRIQSVNLYPLLESLVERFSDQLLEDGPVLLAELTPQMPLVLADIDRTEQILVNLLGNAIRYTTTGSITIRTWTENRQLWIAVIDTGIGIASEDIPHVFERFWRADQSRDRHSGGTGIGLTITKHLVELQSGEIHLDSELGIGSTFRFCLPLA
>NC_003272.1|WP_010998856.1|5632501_5633512_-|porphobilinogen-synthase
MSVENSSTAKPLNLLQRPRRLRRTATLRRMVRETTLTVDDLIYPMFVMEGEGQKVEITSMPGCYRYSLDLLLKEIAEVSQLGIPAIALFPVISENKKDDIGAESYNPEGLVQQTVKAIKQAVPDIVVITDVALDPFTTHGHDGLVDENGTILNDPTVEMLVKMALSQAAAGTDFVAPSDMMDGRIGAIRQALDAEGYINVGILAYSAKYASAYYGPFRDALDSAPKFGDKKTYQMDAANAREAIKEVELDIVEGADIVMVKPALAYLDIIHQVQQATQLPVAAYNVSGEYAMIKAAAQMGWINEKQVILESLTSMKRAGADLILTYFAKEVALMLL
>NC_003272.1|WP_010998855.1|5631209_5632442_-|SidA/IucD/PvdA-family-monooxygenase
MTKKTDLAIVGAGPHALTLTTHLLQKRQSLRGKFLVFDPSGRWMSGWNQQFAALEIPHLRSPAVHHPDPNPFALRKFAESRPHELFPPYDLPGTQLFEDFCQDVVRVWQLQERVIPLAVTKIEPIPHHLRPQFCLSLQDGQKVTARRVVLATGSAQRQIPTWVNEIQTPYPQERICHSQTIDLRKLSLMGKRILIVGGGLTSGHLAVGAISHGAKVQLMMRRQLTEKLFDAEPGWLGPKYLKDFFAQSDWEQRWTTIQQARNGGSMTPAIATQIRRQVRSGNIKIDENCQILKAQWLGKNWQVECSDGSHHECDYIWLSTGTKFDVTHEPLLKDVLVAYPIPIVKGLPVLDTCLRWPGCELFIMGGLAALQVGPTARNLSGARMACEKIVPAIAKPSIAFSPSITGVQAS
>NC_003272.1|WP_010998854.1|5629259_5631098_-|threonine--tRNA-ligase
MVSSLTQSQRDLDQHNSEQLVRIRHTCAHIMAMAVQKLFLGTKVATGPVTDNGFYYDFDCPISITPDDLGKIAAEMRRIIKANLPIIREEVQREEIRTEIAQLNEPYKLEILDRIPPEETITRYFIGSPDTSTPESSLFVADVKPASNYWWDLCAGPHINFTGEIDPNSFQLLNIAGAYWQGDESKPQLQRIYGTAWKTKAELEAYLKQREEALRRDHRKLGQELNLFSIQEEAGGGLVFWHPKGASIRYIIEDYWRKCHLESGYQLLYTPHVANLDLWKTSGHFDFYQENMFDSMEVENQAYQIKPMNCPFHVLTYKHQLHSYRELPLRWAELGTVYRYERSGALHGLMRVRGFTQDDAHIFCLPHQIADEILGVLNLTEHILSDFGFKNYEVNLSTRPDKSVGNNEVWELATSALRQALDAKGWNYIVDEGGGAFYGPKIDIKIQDAIGRLWQCSTIQVDFNLPERFDMEYIATDGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLWLAPVQIRLLPVSDDVRGYTESVAIALQKDGFRVEIDISGERLGKQIRTAELEKIPVVGVVGKKEVENQNLSVRTRANGDLGAINLNDLTNHLRETIIAKK
>NC_003272.1|WP_010998853.1|5628087_5629149_-|GTP-binding-protein
MNTLTAETTNIIPEIPKRGMPVTIITGFLGSGKTTLLNQILKNKHDLKVAVLVNEFGDINIDSQLLVSVDQDMLELSNGCICCTINDGLVDAVYRVLEREERIDYLVIETTGVADPLPIILTFLGTELRDLTNLDSILTVVDAEAFEPNHFESEAALKQLTYADIILLNKTDLATSEKIQALEDYIQTVKDSARILHTKYGEVALPLILGVGLTPKDDYTADDAEDAHEHNHEHHSHEHDHDHDHHEHKHHHEHHSHHLDNDGFVSVSFQSDRPFDVHKFENFLTEEMPQNVFRAKGILWFSDSELRHIFQLSGPRYNLHADEWHTLPKNQLVFIGRKLNTNQIYTQLNNCLV
>NC_003272.1|WP_010998867.1|5647524_5648079_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MAKLFDHITKELQEFIAAQHLFFVASAPLSPDGHVNMSPKGLNCFRILSPHQVAYLDLTGSGNETSAHLQENGRITLMFCAFEGSPLILRLYGTGETILPSSPNWDSLYSLFPPIPGTRQIIVADIERVQTSCGLGVPLYEYQGQRQALVDWAQKKGVQGVNDYRKQKNVVSIDGLPTPLSKLF
>NC_003272.1|WP_010998868.1|5648263_5648935_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MTQQKAPSQRTTVKRVPKRANYESETIYQILDEGLVCQVGFVVDGQPVVIPTAYGRIGDTLYIHGSPASRMLKTLQQGLDVCVTVTLIDGLVLARSAFHHSMNYRSVVVFGKATLVEDAEQKLAALKAFTEHVILGRWEEVRSPNRHELAGTIVLSLPLTEASAKVRTGEPIDDEADYQIPVWAGQIPLKLTAATPINDSRLDSSIELPVYVNNYTRPQKGAA
>NC_003272.1|WP_010998869.1|5649033_5650506_+|PLP-dependent-aminotransferase-family-protein
MDFAINIDPDAPLPLHRQVYEELRRAILLGRLTSGGKLPSTRSLAQLLGVSRATVTQGYELLLSEGYLETIVGSGTFVCRQLPDELLNTAPIESKLQPSNSLVPLSAYGKSLSDKAFLRIPEQAVEISFSYGRPAFDQFPIDLWRKLISRHCHSKAEVLDYTDNSLGYQPLREAIAAYLSRSRAVNCQAEQIIIVGGSQQGLDLITRILIDPNDGIAVEEPGYLGARRAFLAQGASLFPVPVDQSGLIVSKLTTGIIPKLKLIYVTPSHQFPTGAVLSLPRRLELLAWAHKTGVMIIEDDYDSEYRYGERPIPALQGLDQGNSVVYVGTFSKVLFPALRLGYLVLPQNLVNIFARAKWLADRQCSLLEQYALTDFITEGHLERHIRRMRSLYNQRRQTLVQSLFSHFGNRAKILGENAGMHLMVKIDTQISDDEIVQSADLSGVSIGAAYPQYLKDSPGSEFIFGYAELNEQQIQEGVRRLARVIHNLEG
>NC_003272.1|WP_044522318.1|5652123_5653788_+|iron-uptake-porin
MQNKINLLLLSQIVVLILNVPVLAEDIVKNEWRSPDKSDVENLSSEVISEDAQDLGEEVFINPDIYSQTSPEQTMAQVTSVSQLSDVQPSDWAFAALQSLVERYGVIAGYPDGTFKGDRAITRYEFAAGLNAALDKVDQLIASGLTDKVTNADLETLRKLQEEFATELAISRGRVDALEARSADIQAQQFSPNVVLGGQTIFGLAGGFGGNRPGDGEANTIFTYLTQLQLASSFTGKDRFRIGLISGNAANNSFENLQAFNTNMARLAWQGNYDNQVSINSVEYRVAGLGDRVVFTFKPVGFSLGSVLSSNSIYADAGQGAISAFAGSTPILRIGNLDAGLGFDWLLSDEIRLQFAYGTRGSSDSNQGLFGADHSALGLQFLYKPTPSLITGLAYVNAYSSNGHLDTGTGSSNADTSGGINEPSQIHALNASMRWQLTNKLVLGAWGGVMVTDSLKSDAVVLSSTYTVSLGIYDPFGRKGDLFGFLYGLPPKLNNGVLIPTADTGNSTHYEVFYRYLVNDNIAITPGFFLVTDPGHISSNNDIFIGAIRTTFSF
>NC_003272.1|WP_010998873.1|5654598_5656185_+|hypothetical-protein
MANRSRKLTPKSSKQNGSDLEGKKPQIQQQQVGNTDLPKEGEGKINQTQIQKAISPSKSYKPSSIIAIAILLISAGLVLSSTWIGILLIFHPEQVSWLNNFLPEWAHIPGNSENPQTLPQIQISLSQKQQIPGETIPLDDEEKSFLLPVMRQRPDCLSNCKEIVELRVYQLENLKYESQPEKFYRLANSLPITGPEESFAISRGGQDAIASLVENTPENEDVSNPLPLDVVNRFEAGTPAAGVWLNLRGQRQQDNHSVTSGSGTIAYGQIVYYNPDRSNLQLMLSWTSPSGHIPKWEQVTGSKAKELVVDQTIGLEPRLQVYQVKSVNLYLNPIQLEEISLQNPVLKDSGYKNALLFSRNGLWTPAFDWLASIKKQRNNSLPAAAQSQLDLIRIHAEVTKIQADKTWASPSEQVLADLIDGRWEKALQVFSASPQNAQEIAILLKTDKGRLWRRVVAAMQINPNRKAVQAWGALILTVQQGEVKANSWLGEQAKTSTANLSYIQGLTKQLRPQADIIDDSAPSSDIDN
>NC_003272.1|WP_010998874.1|5656391_5656583_-|hypothetical-protein
MATATSTVSECECQAAWTRHLNKSYYQDDQQVKLMNLQAEVDSLLEQLQNLKEQRLAATTKED
>NC_003272.1|WP_010998875.1|5656757_5658599_-|SWIM-zinc-finger-domain-containing-protein
MSGKPKLDLIFIYAQVFAGDRSMSLPQISEFTVRRYANAKSFQRGEAYFEAGAVTTITQRGQQLQAEVEGNERLPYRVSLNFDDKNITSAKCTCAYNLDGWCKHIVATMLVSTRQPEIIEQRPTLEQLLDRLDHVQTQRLVQELVAEQPQLIDVIDQHVSWMNSPVAKPISTQPGREISVNLAAFRGQVKQILREAVRYFEEGYEEDPITEDLFSLVQTALEFSQQGESNNAIAILEAITSTCAENWDEVSEYGADNDEIAWELNLAWCEVILSSELTSAEKVDVQVSLEAWQDEWNADFSMSLDALRQGWDDSHLLRVLQGDIAEMGVWEREVPNYADDLAQIRLKILERQERYQEYLYLAQVEGQTQEYLTMLGRLGRVEEALAAAEMQMSSTEEAFALAKTLAEQGSLPEALDIAQVGFKLPGNCRYELGIWTSDLAEAVGNPEISLLALKEAFQVKPCFVDYQKMAELAGESWENVKTDLLRIIQSCKTWGIESAKVDVFLYEGLIEDAIATVSELSSYHSALIHRVMEAAISHKPDWVITNARRRAEKIMDEGKAEYYSEAVEWLKKVRAAYIQSGRQADWSKYREKLIEIHARKRKLMGMFKERGME
>NC_003272.1|WP_010998876.1|5658888_5660316_+|dihydrolipoyl-dehydrogenase
MSHEFDYDLVIIGAGVGGHGAALHAVSCGLKTAIIEAADMGGTCVNRGCIPSKALLAASGRVRELRDAHHLKSLGIQIGNVEFDRQAIANHANNLVSKIQGDLTNSLKRLGVDIIRGWGKIAGTQKVTVTGDGGEKTITAKDIILSPGSVPFVPPGIEVDGKTVFTSDQGVKLETLPEWVAIIGSGYIGLEFSDIYSALGCEITLIEALDQLMPGFDRDIAKLAERVLITPRDIETKVGIYAKKVIPGSPVVIELADFKTKEVVDVIEVDACLVATGRIPATKNLGLESIGVELDRRNFIPVDDRMAVLSAGEVVPHLWAIGDANGKMMLAHAASAQGIVAVENIIGRERTVDYRSIPAAAFTHPEVSYVGLTETGAKELGQAEGFEVATSRSYFKGNSKALAENEADGIAKVIYRKDTGEVLGVHIFGLHASDLIHEASAAVANRQTVQTLAHLVHAHPTLSEVLDEAYKRAIV
>NC_003272.1|WP_010998877.1|5660423_5661314_+|indole-3-glycerol-phosphate-synthase-TrpC
MQIRRRQPNPAINVSILRYQVAVPDAKPQHILEEIVWQKEVEVDQMREKLPLLELQKKARIAPPTRDFVAALKQGRTTPALIAEVKKASPSKGVFREDFDPVAIALSYQQGGASCISVLTDEKFFQGSFDNLTKVRAAVDLPLLCKDFVIYPYQMYLARIQGADAVLLIAAILSDQDLQYFIKIAKALNMAALVEVHNLEELDRVLALDGVSLVGINNRNLEDFSVDLQTTCQLLAARGSQLQERNILVVSESGLHNPADLSLVSQAGASAVLIGESLVKQPDPELAIANLYSSDV
>NC_003272.1|WP_010998878.1|5661593_5661842_+|DUF5340-domain-containing-protein
MEQIPLPSPIHYELILQLLERQTMSAVSKNPELRHQVNQLIITLRKAAAQQKHLENSCLGSSLSVEHRWSINHHDQQVATPD

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Crispr_ID: NC_003272_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_21

5654133-5654384

Orphan

A:N

Consensus_repeat	Method
GTTAAAACCCTCTAAAATCCCTATCAGGGA----------TTGAAAC	PILER-CR
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CRISPRCasFinder
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CRT

3 spacers

The CRISPR arrays of NC_003272_21

>merge|NC_003272|21|5654133-5654384|PILER-CR,CRISPRCasFinder,CRT
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAACTTTTTCCTGAGTTACCTGTACCCGCTTGATATACGTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAACCTTCTAGCCCTTCTGCTAGTGCTATCCAGTTATTGTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAACCTATTAGGAATCCTAGCAGCGCTGCCACCACTTAAAGTTAAAACCCTCTAAAATCCCTATCAGGGATTAAAAC

>NC_003272|21|14|5654133-5654384|PILER-CR
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	TTTTTCCTGAGTTACCTGTACCCGCTTGATATAC
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CTTCTAGCCCTTCTGCTAGTGCTATCCAGTTATT
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CTATTAGGAATCCTAGCAGCGCTGCCACCACTTAAA
GTTAAAACCCTCTAAAATCCCTATCAGGGATTAAAAC

>NC_003272|21|20|5654133-5654384|CRISPRCasFinder
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	TTTTTCCTGAGTTACCTGTACCCGCTTGATATAC
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CTTCTAGCCCTTCTGCTAGTGCTATCCAGTTATT
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CTATTAGGAATCCTAGCAGCGCTGCCACCACTTAAA
GTTAAAACCCTCTAAAATCCCTATCAGGGATTAAAAC

>NC_003272|21|12|5654133-5654384|CRT
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	TTTTTCCTGAGTTACCTGTACCCGCTTGATATAC
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CTTCTAGCCCTTCTGCTAGTGCTATCCAGTTATT
GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	CTATTAGGAATCCTAGCAGCGCTGCCACCACTTAAA
GTTAAAACCCTCTAAAATCCCTATCAGGGATTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010998867.1\|5647524_5648079_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|334450
NC_003272.1\|WP_010998857.1\|5633624_5634740_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_003272.1\|WP_010998869.1\|5649033_5650506_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_003272.1\|WP_044522318.1\|5652123_5653788_+\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_003272.1\|WP_190449752.1\|5639127_5640903_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_003272.1\|WP_010998874.1\|5656391_5656583_-\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998873.1\|5654598_5656185_+\|hypothetical-protein	unknown	unknown	unknown
NC_003272.1\|WP_010998858.1\|5634736_5635453_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_003272.1\|WP_010998882.1\|5664298_5665216_-\|NAD(+)-kinase	unknown	unknown	gnl\|CDD\|179456
NC_003272.1\|WP_010998875.1\|5656757_5658599_-\|SWIM-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|227059
NC_003272.1\|WP_010998868.1\|5648263_5648935_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NC_003272.1\|WP_010998860.1\|5635711_5636422_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_003272.1\|WP_010998865.1\|5645250_5645793_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_003272.1\|WP_010998876.1\|5658888_5660316_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NC_003272.1\|WP_010998881.1\|5663529_5664216_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_003272.1\|WP_010998878.1\|5661593_5661842_+\|DUF5340-domain-containing-protein	unknown	unknown	gnl\|CDD\|375096
NC_003272.1\|WP_044522324.1\|5662802_5663324_-\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|224347
NC_003272.1\|WP_010998864.1\|5641381_5645068_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|273933
NC_003272.1\|WP_010998879.1\|5662070_5662298_-\|DUF2949-domain-containing-protein	unknown	unknown	gnl\|CDD\|371402
NC_003272.1\|WP_010998877.1\|5660423_5661314_+\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010998867.1\|5647524_5648079_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	4.37351e-11
NC_003272.1\|WP_010998857.1\|5633624_5634740_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.22979e-62
NC_003272.1\|WP_010998869.1\|5649033_5650506_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.48789e-159
NC_003272.1\|WP_044522318.1\|5652123_5653788_+\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	2.75296e-27
NC_003272.1\|WP_190449752.1\|5639127_5640903_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.50465e-177
NC_003272.1\|WP_044522324.1\|5662802_5663324_-\|DUF192-domain-containing-protein	gnl\|CDD\|224347	COG1430, COG1430, Uncharacterized conserved protein [Function unknown].	6.33024e-48
NC_003272.1\|WP_010998858.1\|5634736_5635453_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.14378e-90
NC_003272.1\|WP_010998882.1\|5664298_5665216_-\|NAD(+)-kinase	gnl\|CDD\|179456	PRK02649, ppnK, NAD(+) kinase.	0
NC_003272.1\|WP_010998875.1\|5656757_5658599_-\|SWIM-zinc-finger-domain-containing-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	0
NC_003272.1\|WP_010998868.1\|5648263_5648935_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	9.16449e-58
NC_003272.1\|WP_010998860.1\|5635711_5636422_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.405e-63
NC_003272.1\|WP_010998865.1\|5645250_5645793_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.29354e-40
NC_003272.1\|WP_010998876.1\|5658888_5660316_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_003272.1\|WP_010998881.1\|5663529_5664216_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.92036e-78
NC_003272.1\|WP_010998878.1\|5661593_5661842_+\|DUF5340-domain-containing-protein	gnl\|CDD\|375096	pfam17275, DUF5340, Family of unknown function (DUF5340). This family of unknown function can be found in Cyanobacteria.	2.78575e-37
NC_003272.1\|WP_010998864.1\|5641381_5645068_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|273933	TIGR02025, Magnesium-chelatase_subunit_H, magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	0
NC_003272.1\|WP_010998879.1\|5662070_5662298_-\|DUF2949-domain-containing-protein	gnl\|CDD\|371402	pfam11165, DUF2949, Protein of unknown function (DUF2949). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	8.32627e-31
NC_003272.1\|WP_010998877.1\|5660423_5661314_+\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	6.36049e-142

>NC_003272.1|WP_044522318.1|5652123_5653788_+|iron-uptake-porin
MQNKINLLLLSQIVVLILNVPVLAEDIVKNEWRSPDKSDVENLSSEVISEDAQDLGEEVFINPDIYSQTSPEQTMAQVTSVSQLSDVQPSDWAFAALQSLVERYGVIAGYPDGTFKGDRAITRYEFAAGLNAALDKVDQLIASGLTDKVTNADLETLRKLQEEFATELAISRGRVDALEARSADIQAQQFSPNVVLGGQTIFGLAGGFGGNRPGDGEANTIFTYLTQLQLASSFTGKDRFRIGLISGNAANNSFENLQAFNTNMARLAWQGNYDNQVSINSVEYRVAGLGDRVVFTFKPVGFSLGSVLSSNSIYADAGQGAISAFAGSTPILRIGNLDAGLGFDWLLSDEIRLQFAYGTRGSSDSNQGLFGADHSALGLQFLYKPTPSLITGLAYVNAYSSNGHLDTGTGSSNADTSGGINEPSQIHALNASMRWQLTNKLVLGAWGGVMVTDSLKSDAVVLSSTYTVSLGIYDPFGRKGDLFGFLYGLPPKLNNGVLIPTADTGNSTHYEVFYRYLVNDNIAITPGFFLVTDPGHISSNNDIFIGAIRTTFSF
>NC_003272.1|WP_010998869.1|5649033_5650506_+|PLP-dependent-aminotransferase-family-protein
MDFAINIDPDAPLPLHRQVYEELRRAILLGRLTSGGKLPSTRSLAQLLGVSRATVTQGYELLLSEGYLETIVGSGTFVCRQLPDELLNTAPIESKLQPSNSLVPLSAYGKSLSDKAFLRIPEQAVEISFSYGRPAFDQFPIDLWRKLISRHCHSKAEVLDYTDNSLGYQPLREAIAAYLSRSRAVNCQAEQIIIVGGSQQGLDLITRILIDPNDGIAVEEPGYLGARRAFLAQGASLFPVPVDQSGLIVSKLTTGIIPKLKLIYVTPSHQFPTGAVLSLPRRLELLAWAHKTGVMIIEDDYDSEYRYGERPIPALQGLDQGNSVVYVGTFSKVLFPALRLGYLVLPQNLVNIFARAKWLADRQCSLLEQYALTDFITEGHLERHIRRMRSLYNQRRQTLVQSLFSHFGNRAKILGENAGMHLMVKIDTQISDDEIVQSADLSGVSIGAAYPQYLKDSPGSEFIFGYAELNEQQIQEGVRRLARVIHNLEG
>NC_003272.1|WP_010998868.1|5648263_5648935_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MTQQKAPSQRTTVKRVPKRANYESETIYQILDEGLVCQVGFVVDGQPVVIPTAYGRIGDTLYIHGSPASRMLKTLQQGLDVCVTVTLIDGLVLARSAFHHSMNYRSVVVFGKATLVEDAEQKLAALKAFTEHVILGRWEEVRSPNRHELAGTIVLSLPLTEASAKVRTGEPIDDEADYQIPVWAGQIPLKLTAATPINDSRLDSSIELPVYVNNYTRPQKGAA
>NC_003272.1|WP_010998867.1|5647524_5648079_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MAKLFDHITKELQEFIAAQHLFFVASAPLSPDGHVNMSPKGLNCFRILSPHQVAYLDLTGSGNETSAHLQENGRITLMFCAFEGSPLILRLYGTGETILPSSPNWDSLYSLFPPIPGTRQIIVADIERVQTSCGLGVPLYEYQGQRQALVDWAQKKGVQGVNDYRKQKNVVSIDGLPTPLSKLF
>NC_003272.1|WP_010998865.1|5645250_5645793_+|transposase
MDYRRAKIEGGTFFFTVVTHNRREFLCEPENIRLLRQAFRQVIAQYPFTVDAIVILPNHIHCLWTLPPGDSNFSNRWRLIKNYFTRHCSIKYQETISTSRQNKGELAVWQRRFWEHQIKNEVDFTHHFNYIHYNPVKHGYVKAPKDWQYSSFILYVQRERYNIDWGTGEDIKFSQDIGNE
>NC_003272.1|WP_010998864.1|5641381_5645068_+|magnesium-chelatase-subunit-H
MKRIVLIAGFESFNADLYRKAAFLANSRCADLDIRVFSDRDITSKRLEVEAALQGADVFFGSLLFDYDQVVWLRDRVSQIPIRLVFESALELMSLTKLGAFAIGDKPKGMPKPVKFILDKFSNGREEDKLAGYISFLKIGPKLLKFVPVQKVQDLRNWLIIYGYWNAGGTENVAALFWTLAEKYLDLKIGDIPPPIETPNIGLLHPDYPGFFESPREYLAWYQKREEAGVQGAGCRGEKNPVVGILLYRKHVITKQPYIPQLIRRFEDAGLIPLPIFINGVEGHVAVRDWMTTDYEFQQRQIGNIATPSLSPEAVKVDAIVSTIGFPLVGGPAGSMEAGRQVEVAKRILTAKNVPYIVAAPLLIQDIHSWTRQGVGGLQSVVLYALPELDGAIDTVPLGGLVGEDIYLVPERVQRLIGRVKSWIALRQTPAAERKIAIILYGFPPGYGATGTAALLNVPRSLIKLLHALKDQGYNVGDIPEDGEELIRLVKETDEEMERWEKNKPFPSSANTVNSRKLEKWLGYLRTSRIEKQWKSLTGSGIKTYGDELHVGGVQLGNVWIGVQPPLGIQGDPMRLMFERDLTPHPQYAAFYKWLQNDLQADAVVHFGMHGTVEWLPGSPLGNTGYSWSDILLGDLPNLYIYAANNPSESILAKRRGYGVLISHNVPPYGRAGLYKELITLRDLIAEYREDPNKNYVLKEAICKKIVDTGLDTDCPFEDAKRLGIPFTPENIRMFSAHAFDDYLVKLYEYLQVLETRLFSSGLHTLGEAPNQEELASYLEAYFGEEQAKQPEMEKQITDLLMQTTDELTNLLRGLNGEYIPPAPGGDLLRDGAGVLPTGRNIHALDPYRMPSPAAYERGREIAQKIIAQHLQEHHTYPETVAVLLWGLDAIKTKGESLGILLELVGAEPVKEGTGRIVRYELKPLAEVGHPRIDVLGNLSGIFRDSFVNIIELLDDLFQRAADADEPEDQNFVRKHALALKAQGVENASARLFSNPAGDFGSLVNDRVVDGNWESGEELGNTWQSRNVFSYGRQDKGQARPEVLQQLLKTSDRIVQEIDSVEYGLTDIQEYYANTGGLKKAAEKQSGKKVTASFVESFSKDTTPRNLEDLLRMEYRTKLLNPKWADAMASQGSGGAYEISQRMTALIGWGGTADFKDDWVYDQAADTYALDPEMAEKLRQANPEAFRNILSRMLEAHGRGLWQADTDKLDKLRQLYELTDEQLEGVTV
>NC_003272.1|WP_190449752.1|5639127_5640903_-|ABC-transporter-ATP-binding-protein
MQAIGRVLESLRNYRLISLGALFSLLLLTVANAVTPQLFRWGIDQGIVKKDLQIVLYSAAWMVVAAIARGVFNFGQSYLAEAASQGVAYELRNKIFSKIQNLSFSYHDQSQTSQLLTRVTSDIEQIRTFIGTSLIQVISGIVTLISAAVILLIMNWQLAIITLTVVPMSGWLMARFITQNDRLFRQVQEQLSDLNAVLQENLIGIRVVKAFVRESAERSRYTGLNDALVTANMKTIRAIRNTFPFIFLLSNLVTLAVFGYGGAQVIGNTFSIGELVAFNAYLILILQPILLIGFAAPAIAQAAASAQRVYEVVDAAVEIRDRADAIPFETCGGRITFENVSFRYPGAATEALKDVSFETKPNELIAILGMTGSGKSTVMNLIPRFYDVTKGAIRIDGQDVRDFTLNSLRKHIGIVFQETTLFSGTIRENIAYAKPKASLEQVMEVAKTAQIHDFIMSLPDGYETIVGERGVGLSGGQKQRIAIARTLLTDYSILILDDSTSAVDAKTAAEIQAELDSMMRQKACVTFVVAQRISTVKNADRIFLIDKGRLAAQGTHEELMQTSPLYGAILESQVKKRQEAEERGSRGAGET
>NC_003272.1|WP_010998860.1|5635711_5636422_-|NYN-domain-containing-protein
MTNSSFTKGKNSYHHQAEEPHLPTKIQIKNGSKHEVSRQREPRNDVSITNDLNRGRVAIFIDGANLFQAALQLGIEIDYLKLLCRLTAGSRLLRAFFYTGVDMSRPTPTRQRTNDKQQGFLFWMRRNGYRVVTKELQVTDNNKKPNLNVEIAVDMITLAPHYDTAVLVSGDGDLAYAVNAVSSTGVRVEVVSLRTMTNDCLIDVADYFIDLDSIKQYIQKDSHLGYGYRTLSNSNL
>NC_003272.1|WP_010998858.1|5634736_5635453_-|response-regulator-transcription-factor
MDILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGLEVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRSLRQGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWNRTQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFEDSPVISA
>NC_003272.1|WP_010998857.1|5633624_5634740_-|HAMP-domain-containing-histidine-kinase
MIKKGWRWTKSLPLASRLFVSHLVVMIVGLISLVIISKVSSPRFFVLHLERLESEGVNLINVRADLVQGFEIAWRSSTIWSVLVGSTAAGGLSYWVSKRIMQRLTEMEQITQQFAAGHLQARLPLSDIPELNRLGTSFNRMAASLEGVEARRRELIGDMTHELRTPLTVVRGYLEELADGEIEPSPEVYRRLAKETRRLERLVNDLQELSKAEAGYLPIRIQSVNLYPLLESLVERFSDQLLEDGPVLLAELTPQMPLVLADIDRTEQILVNLLGNAIRYTTTGSITIRTWTENRQLWIAVIDTGIGIASEDIPHVFERFWRADQSRDRHSGGTGIGLTITKHLVELQSGEIHLDSELGIGSTFRFCLPLA
>NC_003272.1|WP_010998873.1|5654598_5656185_+|hypothetical-protein
MANRSRKLTPKSSKQNGSDLEGKKPQIQQQQVGNTDLPKEGEGKINQTQIQKAISPSKSYKPSSIIAIAILLISAGLVLSSTWIGILLIFHPEQVSWLNNFLPEWAHIPGNSENPQTLPQIQISLSQKQQIPGETIPLDDEEKSFLLPVMRQRPDCLSNCKEIVELRVYQLENLKYESQPEKFYRLANSLPITGPEESFAISRGGQDAIASLVENTPENEDVSNPLPLDVVNRFEAGTPAAGVWLNLRGQRQQDNHSVTSGSGTIAYGQIVYYNPDRSNLQLMLSWTSPSGHIPKWEQVTGSKAKELVVDQTIGLEPRLQVYQVKSVNLYLNPIQLEEISLQNPVLKDSGYKNALLFSRNGLWTPAFDWLASIKKQRNNSLPAAAQSQLDLIRIHAEVTKIQADKTWASPSEQVLADLIDGRWEKALQVFSASPQNAQEIAILLKTDKGRLWRRVVAAMQINPNRKAVQAWGALILTVQQGEVKANSWLGEQAKTSTANLSYIQGLTKQLRPQADIIDDSAPSSDIDN
>NC_003272.1|WP_010998874.1|5656391_5656583_-|hypothetical-protein
MATATSTVSECECQAAWTRHLNKSYYQDDQQVKLMNLQAEVDSLLEQLQNLKEQRLAATTKED
>NC_003272.1|WP_010998875.1|5656757_5658599_-|SWIM-zinc-finger-domain-containing-protein
MSGKPKLDLIFIYAQVFAGDRSMSLPQISEFTVRRYANAKSFQRGEAYFEAGAVTTITQRGQQLQAEVEGNERLPYRVSLNFDDKNITSAKCTCAYNLDGWCKHIVATMLVSTRQPEIIEQRPTLEQLLDRLDHVQTQRLVQELVAEQPQLIDVIDQHVSWMNSPVAKPISTQPGREISVNLAAFRGQVKQILREAVRYFEEGYEEDPITEDLFSLVQTALEFSQQGESNNAIAILEAITSTCAENWDEVSEYGADNDEIAWELNLAWCEVILSSELTSAEKVDVQVSLEAWQDEWNADFSMSLDALRQGWDDSHLLRVLQGDIAEMGVWEREVPNYADDLAQIRLKILERQERYQEYLYLAQVEGQTQEYLTMLGRLGRVEEALAAAEMQMSSTEEAFALAKTLAEQGSLPEALDIAQVGFKLPGNCRYELGIWTSDLAEAVGNPEISLLALKEAFQVKPCFVDYQKMAELAGESWENVKTDLLRIIQSCKTWGIESAKVDVFLYEGLIEDAIATVSELSSYHSALIHRVMEAAISHKPDWVITNARRRAEKIMDEGKAEYYSEAVEWLKKVRAAYIQSGRQADWSKYREKLIEIHARKRKLMGMFKERGME
>NC_003272.1|WP_010998876.1|5658888_5660316_+|dihydrolipoyl-dehydrogenase
MSHEFDYDLVIIGAGVGGHGAALHAVSCGLKTAIIEAADMGGTCVNRGCIPSKALLAASGRVRELRDAHHLKSLGIQIGNVEFDRQAIANHANNLVSKIQGDLTNSLKRLGVDIIRGWGKIAGTQKVTVTGDGGEKTITAKDIILSPGSVPFVPPGIEVDGKTVFTSDQGVKLETLPEWVAIIGSGYIGLEFSDIYSALGCEITLIEALDQLMPGFDRDIAKLAERVLITPRDIETKVGIYAKKVIPGSPVVIELADFKTKEVVDVIEVDACLVATGRIPATKNLGLESIGVELDRRNFIPVDDRMAVLSAGEVVPHLWAIGDANGKMMLAHAASAQGIVAVENIIGRERTVDYRSIPAAAFTHPEVSYVGLTETGAKELGQAEGFEVATSRSYFKGNSKALAENEADGIAKVIYRKDTGEVLGVHIFGLHASDLIHEASAAVANRQTVQTLAHLVHAHPTLSEVLDEAYKRAIV
>NC_003272.1|WP_010998877.1|5660423_5661314_+|indole-3-glycerol-phosphate-synthase-TrpC
MQIRRRQPNPAINVSILRYQVAVPDAKPQHILEEIVWQKEVEVDQMREKLPLLELQKKARIAPPTRDFVAALKQGRTTPALIAEVKKASPSKGVFREDFDPVAIALSYQQGGASCISVLTDEKFFQGSFDNLTKVRAAVDLPLLCKDFVIYPYQMYLARIQGADAVLLIAAILSDQDLQYFIKIAKALNMAALVEVHNLEELDRVLALDGVSLVGINNRNLEDFSVDLQTTCQLLAARGSQLQERNILVVSESGLHNPADLSLVSQAGASAVLIGESLVKQPDPELAIANLYSSDV
>NC_003272.1|WP_010998878.1|5661593_5661842_+|DUF5340-domain-containing-protein
MEQIPLPSPIHYELILQLLERQTMSAVSKNPELRHQVNQLIITLRKAAAQQKHLENSCLGSSLSVEHRWSINHHDQQVATPD
>NC_003272.1|WP_010998879.1|5662070_5662298_-|DUF2949-domain-containing-protein
MTIQTKQGGELQMSPSTYSRLIHFLQEDLAISAASLAVALRHREQDPGPLPMILWQYGLISLEQLEKIYDWLETA
>NC_003272.1|WP_044522324.1|5662802_5663324_-|DUF192-domain-containing-protein
MMRWLSLIPMLLSILLMACSSQTTAETPTDTASSPPALVVNSGQTLPISAKATVPNGTTIELEVAKTQEQQQMGLMYRPALPDNRGMLFPFSSPQPARFWMKNVPVALDMVFLQKGVVKYIQAAAPPCPSEPCPNYGPDVLIDAVIELRAGRAAELNLQPGNSIKIEFLNNRN
>NC_003272.1|WP_010998881.1|5663529_5664216_-|response-regulator-transcription-factor
MIATHSPCVLVIETDDSLANQLSFDLQEAGYDAILANDATTGLQYCRDRQPALVVLDRMLAGESGLSLCKNLRNTGVRSPVLVLMARDTVDDRVACLEAGADDYILKPYRPEDFLRLIRLYLKPDVDTTEQLRFGDLILDLANRRAVYSGRNVELTMKEFELLKYLMEHPREVLTREQILENVWGYDFMGESNVIEVYIRYLRLKIEDEGQKRLIQTVRGVGYVLRES
>NC_003272.1|WP_010998882.1|5664298_5665216_-|NAD(+)-kinase
MPKVGIIYNDIKPVAGRVAIELKDKLTAAGWDVSITSSIGGILGYSNPESPVCHTPIDGLTPPGFDSEMKFAIVLGGDGTVLAASRQVAPCGIPILAINTGHMGFLTETYLNQLPQAIDQAIAGEYEIEERAMLTVKVLRGESVLWEALCLNEMVLHREPLTSMCHFEIAVGRHAPVDIAADGVIVSTPTGSTAYSLSAGGPVVAPGVPVLQLVPICPHSLASRALVFPDTEPVNIYPVNIPRLVMVVDGNGGCYIFPEDRVYLERSPYSVKFIRLQPPEFFRILREKLGWGLPHIAKPTSVELP

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Crispr_ID: NC_003272_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_22

5751524-5751631

Orphan

A:N

Consensus_repeat	Method
CTCTTTGACCACTCATACTAGTTTGGTCAAAAACGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_22

>merge|NC_003272|22|5751524-5751631|CRISPRCasFinder
CTCTTTGACCACTCATACTAGTTTGGTCAAAAACGATGAGATAGAGAAATGAAAATGAATGGTTTTGATTTCTCTTTGACCACTCATACTAGTTTGGTCAAAAACGAT

>NC_003272|22|21|5751524-5751631|CRISPRCasFinder
CTCTTTGACCACTCATACTAGTTTGGTCAAAAACGAT	GAGATAGAGAAATGAAAATGAATGGTTTTGATTT
CTCTTTGACCACTCATACTAGTTTGGTCAAAAACGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010998962.1\|5754513_5759169_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_003272.1\|WP_010998966.1\|5762620_5764954_-\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_003272.1\|WP_010998950.1\|5741319_5742594_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|225242
NC_003272.1\|WP_044522366.1\|5748907_5750053_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340833
NC_003272.1\|WP_010998961.1\|5753082_5754450_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_003272.1\|WP_010998968.1\|5766368_5767964_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NC_003272.1\|WP_010998963.1\|5759189_5760494_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|284995
NC_003272.1\|WP_010998951.1\|5743192_5743900_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|225059
NC_003272.1\|WP_010998957.1\|5748038_5748797_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|274395
NC_003272.1\|WP_010998953.1\|5744776_5745358_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|223290
NC_003272.1\|WP_044522357.1\|5737372_5739286_-\|GTPase-family-protein	unknown	unknown	gnl\|CDD\|226124
NC_003272.1\|WP_010998954.1\|5745454_5746399_-\|GDP-L-fucose-synthase	unknown	unknown	gnl\|CDD\|187550
NC_003272.1\|WP_044522369.1\|5765756_5766278_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_003272.1\|WP_010998959.1\|5750529_5751465_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|215029
NC_003272.1\|WP_010998949.1\|5740064_5741123_+\|DUF1350-family-protein	unknown	unknown	gnl\|CDD\|115718
NC_003272.1\|WP_010998964.1\|5761177_5761654_+\|MEKHLA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378025
NC_003272.1\|WP_010998960.1\|5751638_5752928_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_003272.1\|WP_010998969.1\|5768032_5768890_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|184158
NC_003272.1\|WP_010998952.1\|5743900_5744740_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_003272.1\|WP_010998965.1\|5761879_5762599_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010998962.1\|5754513_5759169_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	5.51886e-104
NC_003272.1\|WP_010998966.1\|5762620_5764954_-\|CHASE2-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	3.84292e-79
NC_003272.1\|WP_010998950.1\|5741319_5742594_-\|serine-hydrolase	gnl\|CDD\|225242	COG2367, PenP, Beta-lactamase class A [Defense mechanisms].	5.09346e-78
NC_003272.1\|WP_044522366.1\|5748907_5750053_-\|glycosyltransferase	gnl\|CDD\|340833	cd03804, GT4_WbaZ-like, mannosyltransferase WbaZ and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbaZ in Salmonella enterica has been shown to possess mannosyltransferase activity.	3.01382e-176
NC_003272.1\|WP_010998961.1\|5753082_5754450_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	4.63521e-112
NC_003272.1\|WP_010998968.1\|5766368_5767964_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NC_003272.1\|WP_010998963.1\|5759189_5760494_-\|AAA-family-ATPase	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	2.89457e-05
NC_003272.1\|WP_010998951.1\|5743192_5743900_+\|sugar-transferase	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	8.47751e-98
NC_003272.1\|WP_010998957.1\|5748038_5748797_-\|sugar-transferase	gnl\|CDD\|274395	TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose phosphotransferase, WbaP. The WbaP (formerly RfbP) protein has been characterized as the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.	3.8589e-97
NC_003272.1\|WP_010998953.1\|5744776_5745358_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|223290	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism].	4.27656e-64
NC_003272.1\|WP_044522357.1\|5737372_5739286_-\|GTPase-family-protein	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	2.24951e-100
NC_003272.1\|WP_010998954.1\|5745454_5746399_-\|GDP-L-fucose-synthase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.95746e-160
NC_003272.1\|WP_044522369.1\|5765756_5766278_+\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.13227e-60
NC_003272.1\|WP_010998959.1\|5750529_5751465_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|215029	PLN00016, PLN00016, RNA-binding protein; Provisional.	1.37066e-154
NC_003272.1\|WP_010998949.1\|5740064_5741123_+\|DUF1350-family-protein	gnl\|CDD\|115718	pfam07082, DUF1350, Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.	2.48252e-13
NC_003272.1\|WP_010998964.1\|5761177_5761654_+\|MEKHLA-domain-containing-protein	gnl\|CDD\|378025	pfam08670, MEKHLA, MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.	8.07353e-77
NC_003272.1\|WP_010998960.1\|5751638_5752928_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.65696e-74
NC_003272.1\|WP_010998969.1\|5768032_5768890_+\|diaminopimelate-epimerase	gnl\|CDD\|184158	PRK13577, PRK13577, diaminopimelate epimerase; Provisional.	0
NC_003272.1\|WP_010998952.1\|5743900_5744740_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	7.86699e-92
NC_003272.1\|WP_010998965.1\|5761879_5762599_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	1.33077e-41

>NC_003272.1|WP_010998959.1|5750529_5751465_+|NAD-dependent-epimerase/dehydratase-family-protein
MRILIMGGTRFIGVYLTQILVEQGHEVVLFNRGNRPLPALQGVGQIIGDRTDATQLKEKLSAENFDVVFDNNGRELTDTQPLAEIFQDRVQHFVYMSSAGVYLKSDQLPHIEGDKVDPKSRHKGKHETEAYLQQIGLPFTSIRPTYIYGPRNYNDLESWFFDRIVRDRPLPIPVNGLHITQLGHVKDLAMAMSQVIGNKQAIGQVYNISGDRYVTFDGLARACAQALGKSADDLKIVHYDPKKFDFGKRKAFPMRVQHFFASVNKAQTELNWQPQYDLISGLADAYENDYVASGRDKSEIDFSVDDEILKA
>NC_003272.1|WP_044522366.1|5748907_5750053_-|glycosyltransferase
MPLKYALVHEWLTPKATGGSELVVKEILHHVDADLYALIDFESNNPESYLYQRQIGKTFLQHFPFARNGIQKYLPFLPLAIEQLDLRQYDVILSSSHAVAKGVLTTADQLHICYCHSPMRYAWDLTFDYLRSSQMGNGVAGWVTRYLLHRLRQWDVLSANRVDYFIANSHYTARRIWRCYRREAKVIYPPVNVAEFPFSPHKEDFYLTVCRLVSYKQVSLIVKAFNQLQRPLIIIGTGSEMKQIRQLANSNIQILGWQPDDVVKKYMTKAKAFVYAACEDFGIALVEAQACGTPVIAYGVGGATETVRDVRSYKDTGTGIFFKMQTQAALVEAVEKFEMYQDALDPEYMRSHAAEFSPQNFAKRYLDFLDQCHQQKPNLAG
>NC_003272.1|WP_010998957.1|5748038_5748797_-|sugar-transferase
MTAQSSLLSGKRRLRQDASSSMRSTVKRGQKTKTPKIKPKGLSLQGINGEFAKRLFDIVFSLLVLILFSPVYLILASLIALSSEGPIFYVQERIGQNYKPFNCIKFRTMVSNADEVLMQMMETSPQLRQEFESSFKLKKDPRITKIGQFLRITSLDEFPQFWNVLKGDMSVVGPRPLVAEELPKYGDHIEQVLTIRPGITGLWQVSGRNDIPYPRRVQIDLHYVKSRTLWLDLWIILKTIDVVIMPKNNGAY
>NC_003272.1|WP_010998954.1|5745454_5746399_-|GDP-L-fucose-synthase
MTALELKNKRILVTGGAGFLGRQVIDQLCQAGADTAKISVPRSRDLDLRVWENCQRAVDQQDIIIHLAAHVGGIGLNREKPAELFYDNLIMGTQLIHAAHQAGVEKFVCVGTICAYPKFTPVPFKEDDLWNGYPEETNAPYGVAKKALLVQLQSYRQQYGFNGVYLLPVNLYGPEDNFDPGSSHVIPALIRKVYEAQVRGDKEFPVWGDGSPTREFLYSEDAARGIVMGTQFYNDSEPINLGTGYEISIRDLVTLICELMEFKGEIIWETDKPNGQPRRCLDTERAKQAFNFTAQVDFKQGLKNTIDWYRQNAA
>NC_003272.1|WP_010998953.1|5744776_5745358_-|5-formyltetrahydrofolate-cyclo-ligase
MSAVNDHQVLTKSQLRRSLIKTRQSMSIGEWREKSDRISCLLQSSTLFTQSTTILAYFSFRQEPDLSSLFAHTHHRWGFPRCVDQSLRWHSWIPKDSLNINAYGIKEPDPQAPTIDPEEVDLILVPSVACNYQGYRLGYGGGYYDRLLSSPEWSTKPSIGIVFDFAYLPQLPIENWDQPLQAVLTETSFHVNS
>NC_003272.1|WP_010998952.1|5743900_5744740_-|carbohydrate-ABC-transporter-permease
MNWKTQNSPWRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTLVSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLGMMFPSLASAFGIFLLRQAFMGVPKEIEEAARMDGSSELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFSLDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG
>NC_003272.1|WP_010998951.1|5743192_5743900_+|sugar-transferase
MSVPDFTPKPEHFTMNRLAIVNHPMNADFLQQPVHYSTISVRKRLIDIIGAIVGLIITAIITIPIAILTIINDPGPIFYSQIRCGLNGRHFRIWKFRSMVVNADKVKHLVKNQAQGHIFKSVNDPRITPMGQFLRRTSLDEFPQFWNVLIGDMSLVGTRPPTPDEVVHYEPRHWERLRVKPGMTGEWQTKGRSNIKDFETIVQMDLDYQRKWSITYDLNLILKTVWVVLKKSGAC
>NC_003272.1|WP_010998950.1|5741319_5742594_-|serine-hydrolase
MKSPFLLLGLISTILLSTPANAARLESWKFDPNRNQLNITTDSEVKPRAFLINNPDRIVIDLPGTSFKANTQRKNFGAAVREIRVGKVENNTARIVVELAPGYTTSPDKLVIKGDSASHWILNFSAIKKDVDHTGASEEKISIPVSNNLEFAGVVPLSREISQLDSQIKRLMNRYSSLSAGMFFLDMETGEYLDINGEKTFAAASTIKFPILIALFEEIDAGRINPNETLVMRRDLMTGGSGTMQYRKAGSRFKLMETASKMMIISDNTATNMIIDRLGGKNRLNQKFRTWGLQNTVIRNLLGDFKGTNKTSPKDLVRLAALISNNKLLSATSNSRVMDIMSRCKNRSLLPVGLGKGAVIAHKTGTLGRVLGDAGIIQTPSGKRYLAGIIVARPFGDARARAFINQVSRLVYGYLDQPTSARNF
>NC_003272.1|WP_010998949.1|5740064_5741123_+|DUF1350-family-protein
MKAKLRFQPVSHSWVALHPKPKGVIQFIGGAFFGTFAPMLFYRYLLQYLFDNGYTIILLPFNFTFNHYVEAGFLIREEYEITPQLIRMAKLANYDYQVYLNDRKFSWIGHSIGCKYIALLEAFSALPQQPKELEELIRDIVTKTSNPSDQAKNERKIQSIVENLEVLMNDLQQQRAKATQLIKYYLGYEPDTYWDRMENPNIDKTFFKSIFIKGQTSILLAPVNTGTDSAVPKFLANIIDRLGWGVKPSPQETYALIQATNLFNLLGLIRFKSDNIAKSTGDWFINVFKKPPTDFQNYLVGGHLKPLGIQLGGYVVNFPDSPPMIESPQRRNSELEIYIDKLLQALEKERQL
>NC_003272.1|WP_044522357.1|5737372_5739286_-|GTPase-family-protein
MVRLKPWQWVILAMPIASIIIFLLVSAGMQIHAWGLSWIWAVFTLAFVAWRWLLVKWTQPAIRQIEAALAEVKEELKSAVEDTTPIVSSDRTQQAEAALQEILTIAQNDRPIWEDWTTFWQRCQDLVRAIALIYYPQVQYPLLNIYVPQAYGLIRGTVDDLDQWMQKLSPALNQVTIGQAYQAYEVYRKLEPSARKVWRAWNWAQWLLNPVAAAANRATKGTTNQANQQLLVNLGQLLREAALKNLCRQAIALYSGTTVNISTATVSTPTLPKTKTQTLENILAQAQPVEKVTQKPVNILLAGRTGAGKSSLINTIFQSNLAEVDVLPSTAEIQNYHWQTQDGETLNLLDTPGYEQVKRGDLRDSVLEYATKADLLLLVTPVLDPALQMDVDFLQEIKATVADIPAIAVVTQVDRLRPIREWQPPYDWELGNRPKEIAIREATEYRANLLGDFCNLVLPIVTGDTQTGRLAWGIEALSLGLIQAIAPAKQLRLARFLRNLEARTVAAAKIIDHYTLQMATTQGLTALLKSPVLQFISTISTGSPTLAYLLAEQIPVEQLPIVIGKLQMAYDLFSLLKTEESSTLNFDLLSLWPLLLENPTTPDRNAWAFGHALVEYWTQNLTVEQLRQRFDYYLQQI
>NC_003272.1|WP_010998960.1|5751638_5752928_-|sodium:proton-antiporter
MVDIYIIDLFVIGLLLLVVTLGSGWISRLPLSFALIYLLVGIILGPYGFGLIQLRRDDVFNADLLERITEFVVIISVFSCGLKIIHPLRRRVWDITARLIGFLMPISIFAIAVVAKLFLGMNWGEAILLGAILAPTDPVLASEVQLTDINDKDELRFGLTSEGGLNDALAFPFVYFGLFAIKDDNWNTWFKQWVAVDLIWAIAAALIMGFVVAKAIVWIDQKVQKRRSADALMEDFIALSAILLTYSLTEVVNGYGFLAVFIAGLVFQDTYRNPEKPLAQLEFIERLEKLLEVGTILLLGSILLWQPIINYGYQSLIIIIFLFLIIRPIGAWISTIGKRPLASHRRRLHPGTRWLLGWFGIRGVGSLYYLAYAFGHGLKDAVAEEIAWITYTTVVVSVVIHGISATPLMSWYERNIANEQKTSLPETLN
>NC_003272.1|WP_010998961.1|5753082_5754450_+|cytochrome-P450
MKLPDSPKIPKFMQLVQWIYQPLQLMEASAKAHGDSFTLWLTNKRPIVFLSNPQAIQELFTTPLEQLDARGTAQVLQPLLGENSLLLLSGETHQRQRKLLTPPFHGDRMRAYGDIITNITKEVISNWQLGKPFSVRDSMQEITLRVILQAVFGLREGERYTQLQKRLCDILDLSGSALRSTLSFLPALQIDLGRWSPWGHFLRQREAIDQLLYAEIQDRRDHPDPSRTDILSLMMAARDENGEAMTDVELRDELMTLLVAGHETTASALTWALYWIHKLPQVREKLLAELDNFGDNGDVNEITRLPYLTAVCQETLRIYPIAMVTIPRITKTNLEIGGHQFAPGTMLVGCIYLMHRRPDLYPQPQEFKPERFLEKQYSLYEYLPFGGSNRRCVGMAFALYEMKLILATVLANVDLALVDNYPVKPTRRGVTLAPSGGKWLIATAQHQKIKNPVEV
>NC_003272.1|WP_010998962.1|5754513_5759169_-|hypothetical-protein
MNNLPNSHNLTPENEQSLQTLVRAITFSQGEFSLILLRCNYAALRKRITQQLHQISPIKIHEITLPETVKTLYTNINEQLGDEQPPALIVFGLESAQDIDTVLTAANRVREEFRKNFPFPIMLWVNDQVLQKFIRLATDLENWATIIPFESNTNELISFIQRKTDEVFIGDVIPNPQICWELNRGIQDLQNRGRELNQVIQANLEFVRGLHDYLHDHTDSALAHYQDSLDFWQKNHNLKRQGILLFNIGLTYVRQAEKNLIDNQGCYQKARKYLQRCIAILEKGHFDNLIAKYINTLGEVLRNLNAWPDLYNLAHKSLKLHKNYGQSLKIAQSYGFLAEVSLESFQWYEAKKLAQKALQRLKNISNQKVPERSLYLFILARSQKELNENADAVSNLLAAKTETQAYYNPRLYINILEMLSNVYFEQGQYLAAFQAKQEQLQIEQQYGFCAFVGASYLNPQLQAINPAQLQVDRKGTIAQEIVASGRERDVQRLRERISSTEHKLTVIHGQSGVGKSSILQAGLIPALQEKPIAERDALPILLRVYTDWVGTLGQNLAQAVEEVRGYKLSHDLNSAVAIREQLQKNSERHLLTVLIFDQFEEFFFVYTDKASRKAFYDFLSFCLDIPFVKIVLSLREDYLHYLLELERLFNLGSINNNILDKNIRYYLGNFSPADAKAIIQNLTEKTHFYLEPKLIDKLVEDLSCQFGEVRPIELQIVGAQMQTEKINTLEKYCQFGTKEKLVERFLETVIRNCGSENEHMARLVLYLLTDENGTRPLKTRTDLASDLKPEIKTLDLILEIFVKSGLVLLLPEVPADRYQLVHDYLVPFIRQQQGNELLAELEQERQQRKQIEQELERVETILTQVNAELEKQQVALREAQAGTTLEQEGVSAVRQFDFAQLDALMSAMRSGKALQALVKDGRSLAKYPATSPLLALQTILDNIQERNQFQGHQAWVRSVSFSRDGQYILTASDDCTARLWNLQGKQLISLQGHEDTIWSANFSPDGKYIATASSDRTARLWNFSGQQLAKFQGHQGYVRSVSFSPDGKHIATAGDDHTARLWSFSGQQLVQFPGHQGTVWCISFSPDGKHIATAADDRIVRLWNLKGKLLVRFPGHQDCVWDVSFSPDSQYIATASSDGTSRLWNLAGEQITRFRGHQGVVWSVRFSPNGQYIATTSSDRTARVWNLNGQQLAQFSGHQDYVRSVSFSPDGKYIATASSDRTVRLWHLNKQQFSAFQGHQSTVRSVDFSPDGQKVVTAADDRTVRLWNIKGEELLQFLGHRGKVWSVSFSPDGKYIATTSSDRTVRLWDITGQLLQQFPGHQGTVWSVSFSPDGQHIATASSDLTTRLWSLDGQELMQFKGHDKWVRYVSFSCNGQHIATAADDCTARLWNLAGRQVGQFLGHQSIVWSVNFSPDCQYLVTASEDHTAKLWTLDGQIVTEFRGHQAPVKSAVFSHNGQYIATSSDDRTARLWNLNGQQLAQFKGHKGAVRSISISPDDQYIATASDDRTVRLWPIENLDQLLARGCNWLQDYLENNPHVTESDRRLCDILK
>NC_003272.1|WP_010998963.1|5759189_5760494_-|AAA-family-ATPase
MKLDLIRFFQACNPSKTLAVSKPEDRQYYIDFSKVRGSKIIDELGRTITRLSPDEPTCQLFTGHIGCGKSTELLRLKSELEQQGFHVVYFESSQSLDMADVDVTDILLAIAREVSQSLEAIKINLKPGYFQNLFTEIVGFLQTPLDIGVEAELSVGIGKITAKTKDSPKLRSQLRQYLEPRTNGILESINKELLQPAIAKLKLQGKKGLVVIIDNLDRIDNSLKPTGQIQPEYLFVERGEQLNQLNCHVVYTIPLVLIFSNALGRLTNRFGIDPKVLPMVPVKLQNGTKFAQGINLLQQMVMARAFPGVSWEQNQTLITEVFDSAETLDRLCLVSGGHLRNLLMILFRCLQQEDPPISRKCLDRVIKQRCNELSLAITPDEWEVLYEVAQDKSLRGHEKYELLLPSMFVFEYRDEDGSWFDINPILAEAKDFKL
>NC_003272.1|WP_010998964.1|5761177_5761654_+|MEKHLA-domain-containing-protein
MSGVKEYPGEQYIIIRHSQRLIKSFQYWTGNLLLDVHGSPDETALALFEAPFVLVSHGTEPDPIFNYGNRKALELWEMSWNEFTKMPSRKSAEEMVQQERDRLLAEAATQGFSYYSGVRITSTGKRFYMQDGIIWNLLDEQHQYCGQAAVSYNYQFIT
>NC_003272.1|WP_010998965.1|5761879_5762599_+|rhomboid-family-intramembrane-serine-protease
MVPIRDNNPVTITPYVTYGLIAANILAFLYEANLPPQALDGFLHLAAVVPRELSLSFAGVSVHQPVPEWATLITSQFLHGGFLHLAGNMLFLWIFGNNVEEKLGHARYLLFYLACGILASLSQWYFSQDSSIPSLGASGAIAGVMGAYILRFPNAEILGVVPLGFFFPTFRVPAYFFLGFWFLQQSFYGLAGLQTRTNIGMESGGIAYWAHAGGFIFGALLGPLLGLFSDKAKEESWYS
>NC_003272.1|WP_010998966.1|5762620_5764954_-|CHASE2-domain-containing-protein
MAEEPTEKINKKNGSTANIASNKTTKATLTAAARQSQRLVRLGNILTVALTMGAALLTTSGLSLVQLLENQAISAFFHIRGPLIPPEDIVILAIDDQSISVPEQYYRTDPQKYAYLEPLSKFPFKRVAYAQVVEKLMQAGAKSVALDVVFDLPGSYGNEDDRQLQGVLQKYSGKVTLAAQYEISQSHQGFFTQLRLPYEKFRHDEASIGTVNFPVEVDGKVHRLGSEFTKILGGVDALTDKIPSFDQAVLGTAQVKYPRSAGERIYFWGPAGTFATIPFWHVLDPQNWNTYLQQGQVFQDKIVIIGATAQLANDYHAVAVSSAWLSPEKMSGVEIHANAIATLMKGKAIAQAIPSQSLQALFVLGLVGGTSFIITRSKSGFKRFILSLAVASGWGSVSYISFVYAQLLFPTAIPMLAIAFCGISYLGTEVAKEKIRTRQIVDIFQKYKTSPVVQEIISQQQELQDLLQQRNVALSGKILSGRYKILKVLGYGGFSETYIAEDTQRPGNPQCVVKQLKPVNTQGKGLQLARRLFNLEAQSLEKLGSYQQIPQLLAYFEQEAEFYLVQEYIIGHPLNQELPSGRSISEAETVAIIREILEILVFVHENGVIHRDIKPSNIIRRDSDRKLVLIDFGAVKEISLPQTDNQEPIPFTIGIGTKGYAPSEQCFGRPQYNSDIYAVGMIGIKALTGISPHDLPRDENEEIKWSDKALVSQGFAQILSKMVREDFKQRYQSALAVLAALDQLANTPDKNFGQQNNSSMNTIISIDESDLPTAHWP
>NC_003272.1|WP_044522369.1|5765756_5766278_+|NYN-domain-containing-protein
MGSPMNRLSIFVDGNNMFYAQQKNGWFFDPRRVLEYFKNEQSETTLINAFWYTGLKDPQDQRGFRDALISLGYTVRTKILKEYCDDSSGRYSQKANLDIEIVVDMFNTVDQYDRVVLFSGDGDFERAIELLRSKNTHITVVSTEGMIARELRNATDRYIDLNDIRDRIEKAEG
>NC_003272.1|WP_010998968.1|5766368_5767964_+|2-isopropylmalate-synthase
MTTKPEKIIIFDTTLRDGEQCPGATLNIDEKLAIAKQLARLGVDIIEAGFAFASPGDFEAVHKIAQTVGTQSGPVICSLARARHDDIKAAAEAIKPAAKGRIHTFIATSDIHLQYKLKKTRPEVIAIAEEMVAYAKSFTDDVEFSPEDAGRSDPEFLYQVLERAIAAGATTINIPDTVGYTTPSEFGAIIKGIKENVPNIDQAIISVHGHNDLGLAVANFLEAVKNGARQLECTINGIGERAGNAALEELVMAMHVRRQYFNPFLGRHPDSEEALTNIDTKQIYKTSRLVSNLTGMLVQPNKAIVGANAFAHESGIHQDGVLKNKLTYEIMDAQLIGLTDNQIVLGKHSGRNAFRTRLKELGFELSETELNKAFVKFKEVADKKKEISDWDLEAIVNDEIQQAPDLFRVELVQVSCGSNARPTATVTLRTPDGEELTDAAIGTGPVDAVYKAINRVVNVPNQLIEFSVQSVTAGIDAIGEVTIRLRYESRVFSGHAANTDIIVASAQAYVNALNRLYASLQTQDKQTEVTA
>NC_003272.1|WP_010998969.1|5768032_5768890_+|diaminopimelate-epimerase
MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMGKVSFWSRDIPVIGDDREVIQEKIFLDEGIFTFCAATIGNPHCVILLDDINSEVARNFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGLCDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGELSTEIFAIETVINI

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Crispr_ID: NC_003272_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003272_23

5826074-5826154

Orphan

A:N

Consensus_repeat	Method
ACCAATGATTTGGGATAATTATCTGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003272_23

>merge|NC_003272|23|5826074-5826154|CRISPRCasFinder
ACCAATGATTTGGGATAATTATCTGCGTCCGTCTGAAATCTACGCGGATAGTCACCAATGATTTGGGATAATGATCTGCGT

>NC_003272|23|22|5826074-5826154|CRISPRCasFinder
ACCAATGATTTGGGATAATTATCTGCGT	CCGTCTGAAATCTACGCGGATAGTC
ACCAATGATTTGGGATAATGATCTGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003272.1\|WP_010999013.1\|5823471_5824938_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NC_003272.1\|WP_010999010.1\|5820138_5821671_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NC_003272.1\|WP_010999021.1\|5834399_5835818_-\|carotenoid-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|226196
NC_003272.1\|WP_084789142.1\|5838198_5840217_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_003272.1\|WP_010999014.1\|5825079_5825940_+\|Tab2/Atab2-family-RNA-binding-protein	unknown	unknown	gnl\|CDD\|368938
NC_003272.1\|WP_010999009.1\|5818140_5819703_-\|NAD(P)H-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|235044
NC_003272.1\|WP_010999025.1\|5842406_5842658_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378705
NC_003272.1\|WP_010999017.1\|5827614_5830230_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238504
NC_003272.1\|WP_044522383.1\|5833875_5834277_-\|fasciclin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225214
NC_003272.1\|WP_010999008.1\|5817050_5818079_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_003272.1\|WP_010999012.1\|5822842_5823301_-\|DUF3592-domain-containing-protein	unknown	unknown	gnl\|CDD\|378822
NC_003272.1\|WP_044522386.1\|5841168_5842188_+\|tRNA-dihydrouridine-synthase-family-protein	unknown	unknown	gnl\|CDD\|239200
NC_003272.1\|WP_010999019.1\|5831762_5833793_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|227116
NC_003272.1\|WP_010999011.1\|5821874_5822750_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NC_003272.1\|WP_044522385.1\|5835840_5837592_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_003272.1\|WP_010999007.1\|5815886_5817035_+\|FIST-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225825
NC_003272.1\|WP_010999018.1\|5830252_5831623_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226807
NC_003272.1\|WP_010999016.1\|5826198_5827509_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_003272.1\|WP_010999005.1\|5812605_5813829_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|381147
NC_003272.1\|WP_010999006.1\|5814306_5815638_+\|response-regulator	unknown	unknown	gnl\|CDD\|381147

Protein	Function_ID	Function_description	E-value
NC_003272.1\|WP_010999013.1\|5823471_5824938_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NC_003272.1\|WP_010999010.1\|5820138_5821671_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	8.9365e-59
NC_003272.1\|WP_010999021.1\|5834399_5835818_-\|carotenoid-oxygenase-family-protein	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_003272.1\|WP_084789142.1\|5838198_5840217_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	7.19104e-115
NC_003272.1\|WP_010999014.1\|5825079_5825940_+\|Tab2/Atab2-family-RNA-binding-protein	gnl\|CDD\|368938	pfam06485, DUF1092, Protein of unknown function (DUF1092). This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria.	8.29536e-160
NC_003272.1\|WP_010999009.1\|5818140_5819703_-\|NAD(P)H-quinone-oxidoreductase-subunit-N	gnl\|CDD\|235044	PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit N.	0
NC_003272.1\|WP_010999025.1\|5842406_5842658_+\|hypothetical-protein	gnl\|CDD\|378705	pfam11741, AMIN, AMIN domain. This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.	0.00161706
NC_003272.1\|WP_010999017.1\|5827614_5830230_+\|chloride-channel-protein	gnl\|CDD\|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	4.69913e-158
NC_003272.1\|WP_044522383.1\|5833875_5834277_-\|fasciclin-domain-containing-protein	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	5.35358e-58
NC_003272.1\|WP_010999008.1\|5817050_5818079_+\|GHKL-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.9964e-44
NC_003272.1\|WP_010999012.1\|5822842_5823301_-\|DUF3592-domain-containing-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	8.5111e-15
NC_003272.1\|WP_044522386.1\|5841168_5842188_+\|tRNA-dihydrouridine-synthase-family-protein	gnl\|CDD\|239200	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.	4.61099e-84
NC_003272.1\|WP_010999019.1\|5831762_5833793_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	7.27648e-139
NC_003272.1\|WP_010999011.1\|5821874_5822750_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.71126e-56
NC_003272.1\|WP_044522385.1\|5835840_5837592_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.04244e-50
NC_003272.1\|WP_010999007.1\|5815886_5817035_+\|FIST-C-terminal-domain-containing-protein	gnl\|CDD\|225825	COG3287, COG3287, Uncharacterized conserved protein [Function unknown].	2.02377e-136
NC_003272.1\|WP_010999018.1\|5830252_5831623_-\|hypothetical-protein	gnl\|CDD\|226807	COG4370, COG4370, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_003272.1\|WP_010999016.1\|5826198_5827509_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	7.27777e-107
NC_003272.1\|WP_010999005.1\|5812605_5813829_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.50191e-58
NC_003272.1\|WP_010999006.1\|5814306_5815638_+\|response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.35657e-51

>NC_003272.1|WP_010999014.1|5825079_5825940_+|Tab2/Atab2-family-RNA-binding-protein
MGSIWELDFYSRPILDENQKKVWEVVICESPLDIRTKTDSLFRYAQYCPSTEVNSAWLRTAIQEAISKAGKAPIKIRFFRRQMNNMIVKACEDAGIPALPSRRTLALNQWLKQRMEEVYPQEPGYQGVTTPSVRLDSPLPQRLPDALEGQQWVFVSLSAADLAEMPDWEIGFSEAFPLDFVQVSPETRIPGVLIFSPRALPIAGWMSGLELAFLRVDTSQGMRLVLETGATESWILANIKNPTTVQEARGFEEAKQKANGVHFIGVQSNPEAESFAGFWLLQELGV
>NC_003272.1|WP_010999013.1|5823471_5824938_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MLDQNQTPLIESIKACTARHHAAFYTPGHKQGRGIAQPLADLLGKAVFSADLTELADLDNLSAPQGVIQEAQQLAAAAFGASQTWFLVNGSTCGVEAAILATCRPGDKIILPRNVHSSAIAGLILSGAIPIFIYPEYDPVLDIAHSITPEAVKAALQQHPDAKAVLTVYPTYYGVCGDLEAIAQVTHHYNIPLLVDEAHGAHFAFHPELPTSALAAGADLTVQSIHKVLGAMTQASMLHIQGDRINAVRVSQALQLLQSTSPSYVLLASLDAARQQMALSGKQLMSRTLQLANEARERISQIPGLSVLQPPTKTPSPGFTTLDKTRLTVTVSGLGLTGFAAEEILDEQLGVTAEFATLQHLTFIISLGNTATDIEQLVQGFTTLAETTLPTKALVNPKVNSNLEYFSEISPRDAFFADSETLSIEQACDGICAEIVCPYPPGIPVLMPGEVITKPAIEYLQHIQSLGGFITGCADTSLNTLKVLVNSH
>NC_003272.1|WP_010999012.1|5822842_5823301_-|DUF3592-domain-containing-protein
MNLKFRQITFEDTFSGILGLVIGFVFIGGGFLVGNQVTQERATLTQTQGKVVDSLRRRERDSKDKQKETYAPVVEFSAKGDRIRFTGDYRSYRSSNGKIVAVRYDPKRPTTTARVVDSYEGLIPWISFGMGGLSLISGLRQISPIYLSLGDE
>NC_003272.1|WP_010999011.1|5821874_5822750_-|DUF4349-domain-containing-protein
MQKSIQLPRKSCLFITALVGGVIFTSCASAPQSTNQASAPVPVSASELADNVAQKAVAAPIPRSRPQLIKKAAITLIVTSVDKSIDTVTQIVNRQQGDLIGLNEQQPTKGNTRHTASIQLRVPQNLLEPTIEELAKLGTVENRKITAEDVGNQLVDFQARLTNLRKTEANLQKIMDRAGSVRDVLSVAQELSNVRQSIEQIDAQLKNLQNQVAYSTITLNLKAAVASTSPQLAVNSQIQETWNKSTYSLGNFTVGLLKLGIWLIVYSPYWLILSAGVYGFYRWRRNHLASH
>NC_003272.1|WP_010999010.1|5820138_5821671_-|SagB/ThcOx-family-dehydrogenase
MPEIHQSIAQHYHERTKYDPDTIASKSQRLDWAKQPVPFKEYKIGSAIDLKPYLQETPEVFVNDANGQWWQRLSRLLFRSYGLTARMPSMGNTVYLRAAPSAGGLYPAEVYVVSRGTPLLSPGLYNYQCRTHSLMHYWESDIWQSLQEACFWHPALESTQLAIIVTAVFYRSAWRYEDRAYRRICLDTGHLLGNIELGAAITDYRPHLIGGFIDEAVNDLLYIDPLQEGAIAVLPLADLLDIQQNLSPGCTSLPSATETNYPQVPDGELLKYFHRHTQISASITGKLNLPTVVQERSLEDKYNFPFCLKISTVSAPIYWGENLSDLEITMHKRRSTRAYNGEELTFDELKALLDFTYQPQNYIDQSLDNSPDYFDLNLIETFIAVCGVQGLEAGCYYYAPKAQELRQIRFKNFRRELHFLCLGQELGRDAAAVIFHTSDLKSAIAQYGDRVYRYLHMDAGHLGQRLNLAAIQLNLGVSGIGGFFDDQVNEVLGIPNDEAVIYITTLGRPR
>NC_003272.1|WP_010999009.1|5818140_5819703_-|NAD(P)H-quinone-oxidoreductase-subunit-N
MDFANLAAQLNAGTILPEGIVIVTLMGVLIVDLILGRTSSRWIGYLAIAGLLAAIVALYFQWDATNPISFTGAFIGDDLSIIFRGIIALSAVVTILMSIRYVEQSGTALAEFIAILLTATLGGMFVSGASELVMIFISLETLSISSYLLTGYTKRDPRSNEAALKYLLIGASSTAVFLYGVSLLYGLSGGQTELNAIANGIITANVGQSLGAVIALVFVIAGIGFKISAAPFHQWTPDVYEGAPTPVIAFLSVGSKAAGFALAIRLLTTVFPFVAEEWKFVFTALAVLSMILGNVVALAQTSMKRMLAYSSIAQAGFVMIGLIAGTDAGYASMIFYLLVYLFMNLCGFTCIILFSLRTGTDQIAEYSGLYQKDPLLTLGLSISLLSLGGIPPLAGFFGKIYLFWAGWQAGLYWLVLLGLVTSVISIYYYIRVVKMMVVKEPQEMSDVVKNYPEIRWNLPGFRPLQVGLVLTLIATSVAGILSNPLFTLANNSVANTAILQATKVVSTQVSAIPAEKPDGL
>NC_003272.1|WP_010999008.1|5817050_5818079_+|GHKL-domain-containing-protein
MNCEQEIQRLEKANRILQKKLIRSEVDRVRLEETNSKKETLLKNVINELKQSKIQLEERRHELETTLFNLQTMQDKMSALGSMVADVAHEINNPVGFIMGNLNPAFEYIHELFRLLDLYQQYYPKPCPEIQAAMAAIDYEYVREDLPKLISSMKEGTDRISKLSNSLRTFSRTDAEYKLLFNIHEGIDSTLCILQHRLKAVPDRPQIQVVKKYADIPLIKCFPGQLNQVFMNLLANAIDALEESNFGLSFAEIEQKNNQITIITSLFANSILIQVKDNGFGISNELKSKIFEHSFTTKPVGKGTGLGLAIAQQIIVQKHGGTLEVNSVPGEGSEFIITLPIE
>NC_003272.1|WP_010999007.1|5815886_5817035_+|FIST-C-terminal-domain-containing-protein
MKIVVAHSNDPDSLSAVKEILQQSKDSLQGNNPQAGILFAAIDFDHSLILENINQAFPGIELIGGTTDGEISSLLEFQQDSITLMLFCSDEIEILAGVGYQVSHNPIAATQEAVQKAKAKSTTEPQLCLTHPESLTTSGVSILDGLKLALGEKFPIFGGLAADQSVYQNTHQFFKTEVLSDAVPILLFCGQVLFSHGIASGWFPIGKTSKVTKVDKNIVYEIDGQPALEFYRHYLGQLPPSMEYPLAVFTHDETSFYLRAPIAYDEQSGSITFFADIPEQASINMAEAGKDDILAASQASFMTAFKNYPGTEPAGVLFFSCVARRQLLGTQAQQEYLNTKNILSKDLPCCGFYCNGEISPIQPTGETHFHNETFVTLILGTR
>NC_003272.1|WP_010999006.1|5814306_5815638_+|response-regulator
MLDTSTETSFILIVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQIRVPDLILLDVMMPIMDGFETCKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISSHLQLRSLNKNLEKRVTERTAELNQALKDLQDYQLQLVQQEKMSVLGQLVTGLAHEINNPVSCIYGNLGHALTYFENMNKLINLYQSYYPHPVQEIQDEISEMDLAYVRSDLPNLIFSMKEGIQRIRDISRSLRIFSRSDTEKKIQFDIHEGIDSTILILKHRLKGSENHPDIEIKRDYGVIPQVNCFPGQLNQVFMNILANAIDALEESFSHKYSSIIDSAVTDNQKLMAETPKIIIQTMLSEDQSHALIKIQDNGIGMPHQIKERIFDNLFTTKPVGKGTGLGLSISRQIIIQKHGGKLEVNSEPGRGSEFIINIPIE
>NC_003272.1|WP_010999005.1|5812605_5813829_+|hybrid-sensor-histidine-kinase/response-regulator
MSSPINNSVLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFETCRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHLELRRTQLKLAQEEKMSSLGQLVAGIAHEINNPVNFVYGNLAHAQNYVGDLLNLLKLYENHTANPSPEIQEFSKSIELEFIKQDLPHLLSSMQMGTERVEKIVRSLRLFSRLEDLEFQLFNLHEGIDSTLIILSHRLKILPTDSTINIIKEYGDIPLVECYSGKLNQVFMNLLANAIEALEESVINRERTDTLTIGIRTKVTDDQKSVLIEITDNGVGIPLEVQQRIFEQFFTTKPLGKGTGLGLAIAHEIIVEKHGGTLQVQSTPGKGTQFLITIPIQQVIRY
>NC_003272.1|WP_010999016.1|5826198_5827509_+|TldD/PmbA-family-protein
MGSENLSQDTLAEQLLELALKSGAETAEVYQSRSLSRPVFFEANRLKQLETSQSEGTALRLWRKGRPGLTVAYGSVEPGAMVERALALSELNQSEPVELVSNFQPSYPDLGEAVSVEVLVGWGKEAIALIRDNYPDVLCNSDWECDVETTRLVNTQGLDCYYSDTTLSCYMSAEWVRGDDFLSVSDGQTQRDYLDPEKLAYQILQRLVWAKENVPPPNGRVPVLFTSKAADMLWGTAQAALNGKRVLEAASPWAERVGKQVIAPSLTLYQDPQAGPYSCPFDDEGTPTKSLVFIEKGILQNYYCDRTTGRQLGNGTTGNGFRPGLGSYPTPGLFNFLIKPGSKSLKDLIQNMDDGLIVDQMLGGSAGISGDFSINIELGYRVQKGQVIGRVKDTMVAGNVYTALKQVELGSDADWNGSCYTPSLIVEGLSTTGRNN
>NC_003272.1|WP_010999017.1|5827614_5830230_+|chloride-channel-protein
MYFRSWLQPRRGLAIAEACVIGVLAALSAVFLKVCSGLLGAWRVHSSHILPAWVVLPIIGLSFGYLAGLMVQRLAPEAAGSGIPQVKATLANIPMKLSWRVAIVKLLSAILALGSGLTLGRQGPTVQVGAGLAAGMSRLVPTSPDHRRQMIAAGAGAGLAAAFNAPIAGVLFIIEELLQDLSGLTLGTAIIASFIGGVVSRLLGGRSLNLNIELLSYSSGFSFPEIPFFLLLGVLAGLLGALFNRGLIFSLQFYRNLHISLPLRVALAGLVSGIVVSLLPESFRDNAGLREYVITGDLNPSFAAIAFIAQFILTLVAFGSGAPGGLFAPSLILGSALGHLVGVLEYQITGDGSPVTYALAGMGGFFSAVSKVPITAIVIVFEMTTDFNLVLPLMIVSVTAYLVADKVVPGSLYEKLLLLNGITLTKQMSVEGILSQMTAKDVMQQRVETLDAEITLEEAKQAFASSHHRGFPVVEDNKLVGIITQSDLTKSLSRSLENNPHLREIMTANPMTVTPIHTLSNVLYLLDRYQISRLPVVEGQKLIGIITRADIIRVEADRLNCENPNPGPQPEPSYVVYQTRSPNTGRGRILVPVANPETAATLLKMAAAIARDRHYEIECVQVMLVSRHSSPSETTVRTAKSRRLLRQAEVLAKKWRIPLHTQIRVAHDPAHAILETIKDRHIDLILMGWKGSTSTPGRIFGNVVDTIIRQATCDVVLVKLGSSPFPIPNTQYPISNPQFNRWLVPMAGGPNARIAIKLLPALVTLSDDPQIRLTRVFKPWEFRPDMTVLEQAIRQLMRRRQLSSTVIAAPVQADSVVEGVIKLVETEGYDVVVLGASREGLLQQAIQGNIPEAIASGVDSTVILVRGAIES
>NC_003272.1|WP_010999018.1|5830252_5831623_-|hypothetical-protein
MSDVSRLSLASNSPMATSRLQLLVLSNGHGEDVIAVRILQALLQQANPPDIYALPLVGEGLAYQNLNIPLIGAVRTMPSGGFIYMDGRQLARDVRGGLVQLTWSQIQAVRRWVSSQKKLGNNNAILAVGDIVPLLFAFISGANYAFVGTAKSEYYVRDEVGLLPRKSKAARWENFSGSIYHPWERWLMSRRRCRAVFPRDGLTTQTLKNWPIPAFDVGNPMMDGLEPKVSPQLFYMANARYQEMDRPLVITLLPGSRPPEAYQNWQIIMTSVSALMGSFQERDTFLPSSGSVVFLGAIASGLDLNILAQTVQSQGWRPHADLPLPLQDSNALIFKQRNAYLILTQQSYNECLHWGDVAIAMAGTATEQFIGLGKPAIAIPGQGPQYNPGFAEAQSRLLGLSLILVEEAAQVAPVVRSLFTNPDSLHIIRENGVRRMGKPGAARRIAECLLEKFGNW
>NC_003272.1|WP_010999019.1|5831762_5833793_+|outer-membrane-protein-assembly-factor
MRISSAALLTLTTLVASNATQQAIAAPHTASTPSKQNENLVIPVVEETPVQLGNVTPPETEVTPQFSTKSRVIAQNSPVVLPSTPRPVVPPAPKPATTVNELVVTATDVQIVGATPELQEIIRQVIKTQTGGDTSQTQLQRDVAAILETGLFASANVNSRTTPSGLNVVYQVQPVIVRSLQLTGAKALTYSVAQPRFQSQIGKPISPEGLKQAVAQVNQWYADNGYNLARVLSIEPNRQGILNINVAEGLVSDIKFRFVNDDGKTIDSNGNPVGGRTKPDFLRQQLKLQPGQVFQENIVKQDVQQLYRTGLFQSVNVAFAGDATKLDMIYELKENGARAINLGGSYNGDVGLMGTLNYQDQNIGGKNDTLLANVGLSRTDLQFDTKFISPYRDTNSDRLGYTVNAFRRREISETFDDEIKLANGDKVREGKVGTGISLQRPIDGWNASLGFNYSRTSIRDRQGNITPTDAQGNPLSVSGTGVDDLTTVSFSATKDQRDNPINPTQGSVVRVSTEQSVPIGQGNISMNRLKADYSQYVPVNIFNSQTPQVFALNVQAGTVLGNLPPYETFNLGGSNSVRGYDAGNVGSGRSYVLASAEYRFPIVPIVGGVLFADFASDLGSGDTVLGNPAGVRGKPGSGFGYGAGIRVDSPLGLIRADYGINDQGESRVHLGIGQRF
>NC_003272.1|WP_044522383.1|5833875_5834277_-|fasciclin-domain-containing-protein
MADIVDTAVNAGSFNTLVAAVKAAGLVDTLKGVGPFTVFAPTDEAFAKLPQGTVDALLKDIPKLKKILTYHVVSGKVLAADVVKLKSATTVQGSDVKIDASNGVQINDAKVATPDVAADNGVIHVIDTVLIPA
>NC_003272.1|WP_010999021.1|5834399_5835818_-|carotenoid-oxygenase-family-protein
MQIVDKRSNKKAWASALTEPAKEFPLTQLTIISGNIPEGLRGTLYRNGPARLERGGMLAGHWFDGDGAILAVNFTDGGVHATYRYVQTVGYQVENTADKFLYGNYGMTAPGPVWNQWRKPIKNAANTSVLALPDKLLALWEGGRPYALDLQTLETWGEDNLGGLTNGLTYSAHYKQDPQTKEIFNFGISLGLNAKLNVYKSDSTGKIIQKSAYSLDGLPLIHDFVLAGKYLIFFISPVRLNMLPVLLGTSNYSDSMQWRPELGTQILVIDRESLSLVSRGETEPWYQWHFANGYVDASGAVIVDIARYKDFQTNQYLKEVATGQTHTPAPSTLSRVNLHPQSGKVAAIEQLLDRHCEFPHVPRQNVGQASRYTYMSGFRQGTDISQELLNTIACFDHKTQTFIEAYPGENCYPSEPILADNWVLTVVYDGNSHSSQVWIYDSDRLHEEPICKLELPKVIPHSFHGTWKSEKR
>NC_003272.1|WP_044522385.1|5835840_5837592_-|diguanylate-cyclase
MKIIYWNFIIAHGITAFSYFGIPIVIAVLFGKTKATVPSKFWLAFFLSGAFVLFCGFHHFLAIFEQHMPVSSLHLGILNIMAFISLSTLLCLMPTAYQIVELIAKFQGDARELQRSQQMQQLFLDQGPFGAYIKDEQSRVLYYNKEIQSRFLVGPIEWLGKTDSEFLPDPEQGRLVMVNDQLVLKTLRPLKLIEEVKTPGNEKPYYWLSFKFPFSDHVTGERRIGGISIDITESVEAQRVIADLSRQLEEKTLILEAKNQQVTYLSDMVNMLYTCESEDEVYQVVSLTFTKLFPSVSGCINIIANSKNYVEMRTFWGSEKKSKEVFSQSECWALRRGKLNLLSPHNPGLMCSHLIHPVNGTHLCVPLLGQIEVVGFLHIHALEEIGSEEQQIAEIIARYLAFALNNLLMKQRLTHDNLRDGLTQLFNPSYMQTITDQRLAEAERLGQFLGIVFLDIDNFKSYNSRYGHLTANIALKALAKLLLTSIRSFDIPCRWGGDEFVIVIPNVTMETLIERVEQLRADIAQMQFKDGDQILESITATFGIAISEPGITVKDLLSRANQAMLEAKRTKKNQVVAYRNADN
>NC_003272.1|WP_084789142.1|5838198_5840217_-|EAL-domain-containing-protein
MDKIRLVIKAIENEENNLLQQRSIQTSDSAYRTTWLTISCSIVAASLVSSANIIINQELTKRRRIEKSLQQAHDQLENKVKERTSEIIKTHDKLKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQKFIGKTNVELNLPQEICRIWDYKLQRVFKTGQQTEFESNLPTSWGTKYYHTRLVPELAKDSSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRALFVERLERSLAVVKRHPDYRFAVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLKDLNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAKALGKARHEIFDFSMYSQAAQLLQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVRWQHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRAWQLEFTTHPPLTISVNISSKQFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDDFGIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVETMEQLRQLQIKKCKHAQGYIFSQPLDSQSVDTLIASSLPFKLN
>NC_003272.1|WP_044522386.1|5841168_5842188_+|tRNA-dihydrouridine-synthase-family-protein
MSQVSLPQSLQKDLPLTALAPMQDVTNLWFMKVIAHYGSPDYFFTEYFRVNDTSRLNRGILSAITENDTGRPVFAQMIGESIPDLVRTAKELCGYNIAGVDLNMGCPAPRIYRKNVGGGLLLSPAKVEQILEELRQAVNDRPLTVKMRVGFENTDTFYEILDIVNRHNIDLLSLHGRTVKDMYHGAVKYDLIAEAVRRVDCPVLANGNIHSATTALEVLERTGAAGVMVGRWAIGNPWLFNQIRQALQGETITPVPLVEVRNYIDRLWQTPTAATMPERSRVGYLKMFLNYIALSVDAEGQFLRLMRRTQTELEMFNLCDRFLLSDLTQTLALAPYSGV
>NC_003272.1|WP_010999025.1|5842406_5842658_+|hypothetical-protein
MQAREILRGSDFQYPLQNAEMLVRSLIANQEIVEVTGVEINSIDKGLEIILETTKGEQLQIIPKQDDNAYLVDIAALHKCGMN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003272_3	3.9\|476414\|22\|NC_003272\|CRT	476414-476435	22	MN694363	Marine virus AFVG_250M224, complete genome	23947-23968	1	0.955
NC_003272_19	19.1\|4682764\|26\|NC_003272\|CRISPRCasFinder	4682764-4682789	26	MN694139	Marine virus AFVG_250M1132, complete genome	10425-10450	4	0.846
NC_003272_3	3.4\|476186\|28\|NC_003272\|CRT	476186-476213	28	AP014298	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C41, * SEQUENCING IN PROGRESS *	9608-9635	6	0.786
NC_003272_3	3.4\|476186\|28\|NC_003272\|CRT	476186-476213	28	MN698242	Pelagibacter phage HTVC103P, complete genome	37651-37678	6	0.786
NC_003272_3	3.6\|476276\|28\|NC_003272\|CRT	476276-476303	28	AP014298	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C41, * SEQUENCING IN PROGRESS *	9608-9635	6	0.786
NC_003272_3	3.6\|476276\|28\|NC_003272\|CRT	476276-476303	28	MN698242	Pelagibacter phage HTVC103P, complete genome	37651-37678	6	0.786
NC_003272_5	5.1\|875074\|41\|NC_003272\|CRISPRCasFinder	875074-875114	41	NC_019746	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.01, complete sequence	97362-97402	7	0.829
NC_003272_14	14.3\|3517003\|34\|NC_003272\|CRISPRCasFinder,CRT	3517003-3517036	34	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	246930-246963	7	0.794
NC_003272_14	14.3\|3517003\|34\|NC_003272\|CRISPRCasFinder,CRT	3517003-3517036	34	NZ_CP007050	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	59680-59713	7	0.794
NC_003272_14	14.3\|3517003\|34\|NC_003272\|CRISPRCasFinder,CRT	3517003-3517036	34	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	200537-200570	7	0.794
NC_003272_14	14.3\|3517003\|34\|NC_003272\|CRISPRCasFinder,CRT	3517003-3517036	34	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	34363-34396	7	0.794
NC_003272_9	9.5\|1837138\|35\|NC_003272\|PILER-CR,CRISPRCasFinder,CRT	1837138-1837172	35	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	334083-334117	8	0.771
NC_003272_17	17.14\|3840670\|32\|NC_003272\|PILER-CR	3840670-3840701	32	NZ_CP018573	Marivivens sp. JLT3646 plasmid unnamed, complete sequence	20093-20124	8	0.75
NC_003272_17	17.14\|3840670\|32\|NC_003272\|PILER-CR	3840670-3840701	32	NZ_CP021116	Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence	176174-176205	8	0.75
NC_003272_18	18.4\|4362507\|34\|NC_003272\|CRISPRCasFinder,PILER-CR	4362507-4362540	34	MK448365	Streptococcus satellite phage Javan212, complete genome	12818-12851	8	0.765
NC_003272_5	5.1\|875074\|41\|NC_003272\|CRISPRCasFinder	875074-875114	41	NC_019677	Nostoc sp. PCC 7524 plasmid pNOS7524.01, complete sequence	68060-68100	9	0.78
NC_003272_9	9.5\|1837138\|35\|NC_003272\|PILER-CR,CRISPRCasFinder,CRT	1837138-1837172	35	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	59626-59660	9	0.743
NC_003272_9	9.11\|1837577\|37\|NC_003272\|PILER-CR,CRISPRCasFinder,CRT	1837577-1837613	37	NZ_CP026695	Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP3, complete sequence	57018-57054	9	0.757
NC_003272_14	14.3\|3517003\|34\|NC_003272\|CRISPRCasFinder,CRT	3517003-3517036	34	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	67204-67237	9	0.735
NC_003272_5	5.1\|875074\|41\|NC_003272\|CRISPRCasFinder	875074-875114	41	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	437489-437529	10	0.756
NC_003272_14	14.5\|3517142\|36\|NC_003272\|CRISPRCasFinder,CRT	3517142-3517177	36	MK947459	Salmonella phage vB_SenS_SB13, complete genome	103164-103199	10	0.722
NC_003272_15	15.1\|3517509\|33\|NC_003272\|CRT	3517509-3517541	33	NC_027348	Delftia phage RG-2014, complete genome	12998-13030	10	0.697
NC_003272_5	5.1\|875074\|41\|NC_003272\|CRISPRCasFinder	875074-875114	41	NC_020051	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.02, complete sequence	21005-21045	11	0.732
NC_003272_14	14.5\|3517142\|36\|NC_003272\|CRISPRCasFinder,CRT	3517142-3517177	36	MT074467	Salmonella phage falkor, complete genome	4644-4679	11	0.694
NC_003272_14	14.12\|3517142\|38\|NC_003272\|PILER-CR	3517142-3517179	38	MK947459	Salmonella phage vB_SenS_SB13, complete genome	103164-103201	11	0.711
NC_003272_2	2.19\|447041\|35\|NC_003272\|CRISPRCasFinder,CRT,PILER-CR	447041-447075	35	NZ_CP021807	Sinorhizobium meliloti strain T073 plasmid accessoryA, complete sequence	88113-88147	12	0.657
NC_003272_14	14.12\|3517142\|38\|NC_003272\|PILER-CR	3517142-3517179	38	MT074467	Salmonella phage falkor, complete genome	4644-4681	12	0.684

1. spacer 3.9|476414|22|NC_003272|CRT matches to MN694363 (Marine virus AFVG_250M224, complete genome) position: , mismatch: 1, identity: 0.955

aatggtagtgttactactcccg	CRISPR spacer
aatcgtagtgttactactcccg	Protospacer
*** ******************

2. spacer 19.1|4682764|26|NC_003272|CRISPRCasFinder matches to MN694139 (Marine virus AFVG_250M1132, complete genome) position: , mismatch: 4, identity: 0.846

agccatcgctgtggacggttagtttt	CRISPR spacer
ggacatcgatgtggacggtgagtttt	Protospacer
.* ***** ********** ******

3. spacer 3.4|476186|28|NC_003272|CRT matches to AP014298 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C41, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

taaagttgcgttattatttccactatct	CRISPR spacer
aaaagttatgttattatttccactacta	Protospacer
 ******..****************..

4. spacer 3.4|476186|28|NC_003272|CRT matches to MN698242 (Pelagibacter phage HTVC103P, complete genome) position: , mismatch: 6, identity: 0.786

taaagttgcgttattatttccactatct	CRISPR spacer
ataagttgcattattatttccacaagca	Protospacer
  *******.************* * *

5. spacer 3.6|476276|28|NC_003272|CRT matches to AP014298 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S28-C41, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

taaagttgcgttattatttccactatct	CRISPR spacer
aaaagttatgttattatttccactacta	Protospacer
 ******..****************..

6. spacer 3.6|476276|28|NC_003272|CRT matches to MN698242 (Pelagibacter phage HTVC103P, complete genome) position: , mismatch: 6, identity: 0.786

taaagttgcgttattatttccactatct	CRISPR spacer
ataagttgcattattatttccacaagca	Protospacer
  *******.************* * *

7. spacer 5.1|875074|41|NC_003272|CRISPRCasFinder matches to NC_019746 (Gloeocapsa sp. PCC 7428 plasmid pGLO7428.01, complete sequence) position: , mismatch: 7, identity: 0.829

ggcgataacttcgttaagctgcgctaacgcactctccaaaa-----	CRISPR spacer
ggcgataacttcgttaagcttcgctaacgcatt-----aaactttg	Protospacer
******************** **********.*     ***

8. spacer 14.3|3517003|34|NC_003272|CRISPRCasFinder,CRT matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.794

-cgatatggttccgttgttgagggttgccctgcga	CRISPR spacer
ttggtat-gctccgttgttgatggttgccccgcgg	Protospacer
 .*.*** *.*********** ********.***.

9. spacer 14.3|3517003|34|NC_003272|CRISPRCasFinder,CRT matches to NZ_CP007050 (Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

-cgatatggttccgttgttgagggttgccctgcga	CRISPR spacer
ttggtat-gctccgttgttgatggttgccccgcgg	Protospacer
 .*.*** *.*********** ********.***.

10. spacer 14.3|3517003|34|NC_003272|CRISPRCasFinder,CRT matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

-cgatatggttccgttgttgagggttgccctgcga	CRISPR spacer
ttgctat-gctccgttgttgatggttgccccgcgg	Protospacer
 .* *** *.*********** ********.***.

11. spacer 14.3|3517003|34|NC_003272|CRISPRCasFinder,CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 7, identity: 0.794

-cgatatggttccgttgttgagggttgccctgcga	CRISPR spacer
ttggtat-gctccgttgttgatggttgccccgcgg	Protospacer
 .*.*** *.*********** ********.***.

12. spacer 9.5|1837138|35|NC_003272|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 8, identity: 0.771

ctatcttcagcgtattgtaaagcttgctttaattg	CRISPR spacer
cattgatcagcgtattttgaagcttgctttaataa	Protospacer
*  *  ********** *.************** .

13. spacer 17.14|3840670|32|NC_003272|PILER-CR matches to NZ_CP018573 (Marivivens sp. JLT3646 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcctgaaacgatttagacaag----gatcttt	CRISPR spacer
cctttcctgaaacgatttaggtaagctatgat----	Protospacer
. ******************..***    ***

14. spacer 17.14|3840670|32|NC_003272|PILER-CR matches to NZ_CP021116 (Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcctgaaacgatttagacaag----gatcttt	CRISPR spacer
cctttcctgaaacgatttaggtaagctatgat----	Protospacer
. ******************..***    ***

15. spacer 18.4|4362507|34|NC_003272|CRISPRCasFinder,PILER-CR matches to MK448365 (Streptococcus satellite phage Javan212, complete genome) position: , mismatch: 8, identity: 0.765

cgatggataaagatactaactttttcttcatcag	CRISPR spacer
ccttactgagagttactaactttttcttcatcag	Protospacer
*  *.   *.** *********************

16. spacer 5.1|875074|41|NC_003272|CRISPRCasFinder matches to NC_019677 (Nostoc sp. PCC 7524 plasmid pNOS7524.01, complete sequence) position: , mismatch: 9, identity: 0.78

ggcgataacttcgttaagctgcgctaacgcactctccaaaa	CRISPR spacer
agcgataactccgttaagctccgctaacgcacctatcaacc	Protospacer
.*********.********* ***********.. .***

17. spacer 9.5|1837138|35|NC_003272|PILER-CR,CRISPRCasFinder,CRT matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 9, identity: 0.743

ctatcttcagcgtattgtaaagcttgctttaattg	CRISPR spacer
cattgatcagcgtattttgaagcttgctttaacaa	Protospacer
*  *  ********** *.*************. .

18. spacer 9.11|1837577|37|NC_003272|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026695 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP3, complete sequence) position: , mismatch: 9, identity: 0.757

tgaaactcagttcgtgcctcatcaaatttaatcaaat	CRISPR spacer
tgaaaatcagttcttgcctcatcaaaagcgattaatg	Protospacer
***** ******* ************  ..**.**

19. spacer 14.3|3517003|34|NC_003272|CRISPRCasFinder,CRT matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.735

cgatatggttccgttgttgagggttgccctgcga	CRISPR spacer
tggaaatgctccgttgttgatggttgccccgcgg	Protospacer
.*. *  *.*********** ********.***.

20. spacer 5.1|875074|41|NC_003272|CRISPRCasFinder matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 10, identity: 0.756

ggcgataacttcgttaagctgcgctaacgcactctccaaaa	CRISPR spacer
ggcgataacttcgttaagcttcgctaacgccttgccttgtt	Protospacer
******************** ********* .* .*. .

21. spacer 14.5|3517142|36|NC_003272|CRISPRCasFinder,CRT matches to MK947459 (Salmonella phage vB_SenS_SB13, complete genome) position: , mismatch: 10, identity: 0.722

ttgaggctagattatttatttttgatgctgtttcct	CRISPR spacer
ccaatctgatattatttatttttgttgctgttacct	Protospacer
...*  . * ************** ******* ***

22. spacer 15.1|3517509|33|NC_003272|CRT matches to NC_027348 (Delftia phage RG-2014, complete genome) position: , mismatch: 10, identity: 0.697

acaagaagcgatcacctgtaatcaatgagtctg	CRISPR spacer
ccaagaagcaatcacctgtcatcaaccgcgtag	Protospacer
 ********.********* *****. .  . *

23. spacer 5.1|875074|41|NC_003272|CRISPRCasFinder matches to NC_020051 (Gloeocapsa sp. PCC 7428 plasmid pGLO7428.02, complete sequence) position: , mismatch: 11, identity: 0.732

ggcgataacttcgttaagctgcgctaacgcactctccaaaa	CRISPR spacer
agcaataacttcgttaagctccgctaacgcacaactgggta	Protospacer
.**.**************** ***********  .. .. *

24. spacer 14.5|3517142|36|NC_003272|CRISPRCasFinder,CRT matches to MT074467 (Salmonella phage falkor, complete genome) position: , mismatch: 11, identity: 0.694

ttgaggctagattatttatttttgatgctgtttcct	CRISPR spacer
ccagtctgatattatttatttttgttgctgttacct	Protospacer
....  . * ************** ******* ***

25. spacer 14.12|3517142|38|NC_003272|PILER-CR matches to MK947459 (Salmonella phage vB_SenS_SB13, complete genome) position: , mismatch: 11, identity: 0.711

ttgaggctagattatttatttttgatgctgtttcctgt	CRISPR spacer
ccaatctgatattatttatttttgttgctgttacctgc	Protospacer
...*  . * ************** ******* ****.

26. spacer 2.19|447041|35|NC_003272|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021807 (Sinorhizobium meliloti strain T073 plasmid accessoryA, complete sequence) position: , mismatch: 12, identity: 0.657

gtttgtatggacggccatacagatcgccgatggaa	CRISPR spacer
caggcaatggacggccattctgatcgccgattcgt	Protospacer
      ************ * **********  .

27. spacer 14.12|3517142|38|NC_003272|PILER-CR matches to MT074467 (Salmonella phage falkor, complete genome) position: , mismatch: 12, identity: 0.684

ttgaggctagattatttatttttgatgctgtttcctgt	CRISPR spacer
ccagtctgatattatttatttttgttgctgttacctgc	Protospacer
....  . * ************** ******* ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2530911 : 2603278

Bacillus_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010996272.1\|2530911_2532393_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_010996273.1\|2532453_2533326_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_010996274.1\|2533447_2534698_-	glycoside hydrolase family 10 protein	NA	NA	NA	NA
WP_010996275.1\|2535034_2536846_+	hypothetical protein	NA	NA	NA	NA
WP_010996276.1\|2537170_2537791_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_010996277.1\|2537918_2539382_+	ferrous iron transporter B	NA	NA	NA	NA
WP_010996278.1\|2539383_2539608_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_010996279.1\|2539608_2540601_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_010996280.1\|2540871_2541480_+	cysteine hydrolase family protein	NA	NA	NA	NA
WP_010996281.1\|2541479_2542862_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_010996282.1\|2543335_2548387_-	caspase family protein	NA	NA	NA	NA
WP_010996283.1\|2548970_2549705_+	hypothetical protein	NA	NA	NA	NA
WP_044521243.1\|2549962_2550961_-	hypothetical protein	NA	NA	NA	NA
WP_010996285.1\|2550953_2552312_-	radical SAM protein	NA	NA	NA	NA
WP_010996286.1\|2552483_2552822_-	hypothetical protein	NA	NA	NA	NA
WP_010996287.1\|2553021_2555898_-	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_010996288.1\|2556100_2556469_+	hypothetical protein	NA	NA	NA	NA
WP_010996289.1\|2556911_2558372_+	hypothetical protein	NA	NA	NA	NA
WP_010996290.1\|2558470_2559649_+	hypothetical protein	NA	NA	NA	NA
WP_010996291.1\|2559897_2560230_-	hypothetical protein	NA	NA	NA	NA
WP_010996292.1\|2560328_2561441_-	sodium-dependent bicarbonate transport family permease	NA	NA	NA	NA
WP_010996294.1\|2563079_2563781_+	DUF2887 domain-containing protein	NA	NA	NA	NA
WP_044522919.1\|2563993_2564197_+	hypothetical protein	NA	NA	NA	NA
WP_044522921.1\|2565051_2567358_+	PAS domain S-box protein	NA	NA	NA	NA
WP_010996296.1\|2567365_2567995_+	response regulator transcription factor	NA	NA	NA	NA
WP_010996297.1\|2568399_2568702_+	hypothetical protein	NA	NA	NA	NA
WP_010996298.1\|2569106_2569664_+	DsbA family protein	NA	NA	NA	NA
WP_010996299.1\|2569828_2570812_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010996300.1\|2570848_2571583_+	SDR family oxidoreductase	A0A2P0VP75	Tetraselmis_virus	1.1e-09	29.5
WP_010996301.1\|2571744_2572536_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010996304.1\|2574403_2576197_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.4e-47	29.9
WP_010996305.1\|2576628_2577714_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044521252.1\|2577812_2580434_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_010996307.1\|2580622_2581642_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010996309.1\|2582399_2582603_-	hypothetical protein	NA	NA	NA	NA
WP_010996310.1\|2582882_2583722_-\|transposase	transposase	A0A1V0E8E1	Vibrio_phage	3.9e-16	40.5
WP_126987088.1\|2584192_2586622_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_010996312.1\|2586679_2587543_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010996313.1\|2587570_2587792_+	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_044522928.1\|2587830_2588208_-	DUF1636 family protein	NA	NA	NA	NA
WP_044521254.1\|2588212_2589190_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010996316.1\|2589319_2591956_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_010996317.1\|2592075_2593098_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010996319.1\|2593462_2596387_-	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_010996320.1\|2596465_2598724_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_010996321.1\|2598766_2599276_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_010996322.1\|2599280_2599658_-	response regulator	NA	NA	NA	NA
WP_010996323.1\|2599674_2600718_-	response regulator	W8CYM9	Bacillus_phage	7.6e-09	31.2
WP_044522932.1\|2601337_2602642_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.4e-82	42.1
WP_044522934.1\|2602879_2603278_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	8.6e-30	51.5

DBSCAN-SWA_2

3231781 : 3289430

Paenibacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010996820.1\|3231781_3232675_-\|transposase	IS982-like element ISNsp1 family transposase	NA	NA	NA	NA
WP_044521433.1\|3232856_3233657_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_010996823.1\|3233667_3233913_+	hypothetical protein	NA	NA	NA	NA
WP_010996824.1\|3234089_3234305_+	hypothetical protein	NA	NA	NA	NA
WP_010996825.1\|3234301_3234508_+	hypothetical protein	NA	NA	NA	NA
WP_010996828.1\|3237642_3238524_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-20	30.8
WP_010996829.1\|3238655_3239969_-	MFS transporter	NA	NA	NA	NA
WP_010996830.1\|3240066_3242670_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_126987613.1\|3242897_3244259_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_044521438.1\|3244519_3247450_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.6e-46	30.1
WP_010996833.1\|3247586_3248264_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_010996834.1\|3248681_3252302_+	AMP-binding protein	A0A1V0SBX8	Catovirus	2.8e-10	20.5
WP_044523045.1\|3252398_3259766_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.3e-30	33.0
WP_010996836.1\|3259880_3267437_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.4e-32	34.0
WP_010996837.1\|3267480_3268128_-	HAD family hydrolase	NA	NA	NA	NA
WP_010996838.1\|3268693_3274534_+	AAA family ATPase	A0A2H4UU60	Bodo_saltans_virus	1.0e-06	27.6
WP_010995738.1\|3275412_3276306_+\|transposase	IS982-like element ISNsp1 family transposase	NA	NA	NA	NA
WP_010996839.1\|3276292_3276832_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_010996840.1\|3276935_3277325_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010996841.1\|3277321_3277558_-	hypothetical protein	NA	NA	NA	NA
WP_049942447.1\|3277623_3278901_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_158303715.1\|3281509_3281656_-	hypothetical protein	NA	NA	NA	NA
WP_158303716.1\|3281937_3282084_-	hypothetical protein	NA	NA	NA	NA
WP_010996846.1\|3282085_3284110_+	type V CRISPR-associated protein Cas12k	NA	NA	NA	NA
WP_096637149.1\|3284235_3285029_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010996820.1\|3285535_3286429_+\|transposase	IS982-like element ISNsp1 family transposase	NA	NA	NA	NA
WP_010996848.1\|3286572_3287058_+	hypothetical protein	NA	NA	NA	NA
WP_010996849.1\|3287086_3287530_+	hypothetical protein	NA	NA	NA	NA
WP_126987825.1\|3287600_3288044_+	hypothetical protein	NA	NA	NA	NA
WP_010996851.1\|3288209_3289430_+\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

4009955 : 4082145

Vibrio_phage(10.0%)

plate,transposase,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010997468.1\|4009955_4013651_-\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_010997469.1\|4013699_4014149_-	GPW/gp25 family protein	A0A126HGC9	Vibrio_phage	2.1e-08	36.5
WP_010997470.1\|4014150_4014453_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_010997471.1\|4014538_4016308_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_010997472.1\|4016304_4017009_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_010997473.1\|4017197_4017350_-	hypothetical protein	NA	NA	NA	NA
WP_010997474.1\|4017398_4017902_-\|tail	phage tail protein	NA	NA	NA	NA
WP_010997475.1\|4017913_4018345_-\|tail	phage tail protein	A0A059XEM3	uncultured_phage	2.5e-30	54.1
WP_010997476.1\|4018459_4019914_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	7.6e-23	36.9
WP_010997477.1\|4019931_4021131_-	hypothetical protein	NA	NA	NA	NA
WP_010997478.1\|4021239_4021818_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_010997479.1\|4022294_4023059_-	circadian clock KaiB family protein	NA	NA	NA	NA
WP_010997480.1\|4023219_4024518_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_010997481.1\|4025222_4025597_+	hypothetical protein	NA	NA	NA	NA
WP_010997482.1\|4025731_4027900_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_126987002.1\|4028244_4028718_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_010997484.1\|4028861_4030145_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010997485.1\|4030232_4031024_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-30	36.3
WP_010997486.1\|4031091_4031913_-	nitrate ABC transporter permease	NA	NA	NA	NA
WP_010997487.1\|4032026_4032911_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_010997488.1\|4033202_4033550_+	hypothetical protein	NA	NA	NA	NA
WP_010997489.1\|4033726_4035076_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_010997490.1\|4035125_4036433_+	dihydroorotase	NA	NA	NA	NA
WP_010997491.1\|4036435_4036909_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_010997492.1\|4037016_4037922_-	CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein	NA	NA	NA	NA
WP_010997493.1\|4038358_4038613_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	3.6e-05	43.3
WP_010997494.1\|4038833_4040084_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_010997495.1\|4040455_4042468_+	transketolase	NA	NA	NA	NA
WP_010997496.1\|4042802_4043825_+	CsgG/HfaB family protein	NA	NA	NA	NA
WP_010997497.1\|4043918_4048205_-	M10 family metallopeptidase C-terminal domain-containing protein	H2DE49	Erwinia_phage	1.4e-08	44.9
WP_126987540.1\|4048536_4050429_-	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_010997499.1\|4050502_4051174_-	response regulator transcription factor	NA	NA	NA	NA
WP_010997500.1\|4051423_4052128_-	hypothetical protein	NA	NA	NA	NA
WP_010997501.1\|4052474_4053392_+	histone deacetylase	A0A2K9L2T7	Tupanvirus	6.9e-14	27.4
WP_010997502.1\|4054078_4055218_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_010997503.1\|4055405_4055867_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_044521720.1\|4056662_4058969_+	peptidoglycan DD-metalloendopeptidase family protein	A0A075BS18	Microcystis_phage	1.2e-27	50.8
WP_010997505.1\|4059042_4059951_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_010997506.1\|4060269_4061454_+	NAD(P)H-quinone oxidoreductase subunit H	NA	NA	NA	NA
WP_010997507.1\|4061956_4062496_+	GAF domain-containing protein	NA	NA	NA	NA
WP_010997508.1\|4062532_4063747_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010997509.1\|4064098_4064977_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_044521723.1\|4065022_4066381_-	histidine kinase	NA	NA	NA	NA
WP_010997512.1\|4067126_4068179_+	permease	NA	NA	NA	NA
WP_010997513.1\|4068268_4069027_+	TIGR03943 family protein	NA	NA	NA	NA
WP_010997514.1\|4069076_4070567_+	hypothetical protein	NA	NA	NA	NA
WP_190449575.1\|4071022_4072570_+	hypothetical protein	NA	NA	NA	NA
WP_044521726.1\|4072961_4073816_+	hypothetical protein	NA	NA	NA	NA
WP_126987537.1\|4073873_4074275_+	hypothetical protein	NA	NA	NA	NA
WP_010997518.1\|4074662_4077014_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_010997519.1\|4077405_4077633_+	hypothetical protein	NA	NA	NA	NA
WP_044521731.1\|4078977_4080255_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_010997522.1\|4080572_4080974_-\|transposase	IS200/IS605-like element ISNsp2 family transposase	A0A1L2BWN1	Bacteriophage	6.7e-22	40.7
WP_010997523.1\|4081020_4082145_+\|transposase	transposase	G9CU70	Helicobacter_phage	3.4e-79	46.1

DBSCAN-SWA_4

4374489 : 4445320

Bacillus_phage(15.38%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010995738.1\|4374489_4375383_-\|transposase	IS982-like element ISNsp1 family transposase	NA	NA	NA	NA
WP_126987735.1\|4376789_4377194_-	hypothetical protein	NA	NA	NA	NA
WP_010997772.1\|4377420_4378410_+	ATP-binding protein	NA	NA	NA	NA
WP_044521839.1\|4378413_4378917_-	TniQ family protein	NA	NA	NA	NA
WP_010997774.1\|4378916_4379747_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_044521841.1\|4379750_4381451_-\|transposase	Mu transposase C-terminal domain-containing protein	NA	NA	NA	NA
WP_010997776.1\|4381848_4382796_-	type-2 restriction enzyme AvaI	NA	NA	NA	NA
WP_010997777.1\|4382795_4384244_-	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_010997778.1\|4384453_4385494_-	M42 family metallopeptidase	NA	NA	NA	NA
WP_010997779.1\|4385663_4386722_-	hypothetical protein	NA	NA	NA	NA
WP_044521851.1\|4387088_4388429_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_010994426.1\|4388849_4389812_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_010997781.1\|4389901_4390105_-	hypothetical protein	NA	NA	NA	NA
WP_010997783.1\|4391425_4392199_+	TIGR04255 family protein	NA	NA	NA	NA
WP_010997784.1\|4392195_4392735_+	hypothetical protein	NA	NA	NA	NA
WP_010997785.1\|4392738_4393260_+	hypothetical protein	NA	NA	NA	NA
WP_010997786.1\|4393463_4395350_-\|protease	ATP-dependent zinc metalloprotease FtsH2	G9E4U6	Ostreococcus_lucimarinus_virus	4.3e-127	49.0
WP_190449808.1\|4395684_4396179_-	hypothetical protein	NA	NA	NA	NA
WP_010997788.1\|4396588_4398409_+	aspartate kinase	NA	NA	NA	NA
WP_010997789.1\|4398742_4399087_+	XisI protein	NA	NA	NA	NA
WP_010997790.1\|4399519_4400122_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010997791.1\|4400163_4401468_+	ABC exporter membrane fusion protein	NA	NA	NA	NA
WP_010997792.1\|4401510_4402677_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_010997793.1\|4402760_4403510_+	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-82	72.9
WP_010997794.1\|4403616_4404183_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_010997795.1\|4404282_4405782_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-52	32.5
WP_010997796.1\|4406021_4408370_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.9e-161	41.6
WP_010997797.1\|4409047_4409533_-	allophycocyanin subunit alpha-B	NA	NA	NA	NA
WP_010997798.1\|4409747_4411130_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	1.3e-72	34.8
WP_010997799.1\|4411537_4411987_+	anti-sigma regulatory factor	NA	NA	NA	NA
WP_010997800.1\|4412037_4412334_-	hypothetical protein	NA	NA	NA	NA
WP_044521867.1\|4412430_4412793_+	hypothetical protein	NA	NA	NA	NA
WP_010997802.1\|4412795_4414187_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.9e-88	39.7
WP_010997803.1\|4415144_4416914_+	calcium-binding protein	NA	NA	NA	NA
WP_010997804.1\|4417144_4417822_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.4e-19	42.0
WP_010997805.1\|4418761_4419073_+	co-chaperone GroES	A0A221S386	uncultured_virus	6.5e-17	50.0
WP_010997806.1\|4419168_4420803_+	chaperonin GroEL	A0A240F779	uncultured_virus	5.5e-155	55.2
WP_010997807.1\|4420907_4421957_+	HNH endonuclease	NA	NA	NA	NA
WP_010997810.1\|4422799_4423639_+	urease accessory protein UreD	NA	NA	NA	NA
WP_010997811.1\|4423666_4423969_+	urease subunit gamma	NA	NA	NA	NA
WP_010997812.1\|4423989_4424316_+	urease subunit beta	NA	NA	NA	NA
WP_010997813.1\|4424333_4424726_-	GxxExxY protein	E5ESB4	Bathycoccus_sp._RCC1105_virus	1.1e-05	33.7
WP_010997814.1\|4424794_4426501_+	urease subunit alpha	NA	NA	NA	NA
WP_044521872.1\|4426636_4427818_+	hybrid sensor histidine kinase/response regulator	W8CYM9	Bacillus_phage	3.1e-14	38.7
WP_010997816.1\|4427869_4429252_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_010997817.1\|4429410_4430001_-	sulfite oxidase-like oxidoreductase	NA	NA	NA	NA
WP_010997818.1\|4430458_4430632_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_010997819.1\|4430831_4431404_-	hypothetical protein	NA	NA	NA	NA
WP_010997820.1\|4431601_4433551_+	caspase family protein	NA	NA	NA	NA
WP_010997821.1\|4433586_4433964_-	Mo-dependent nitrogenase C-terminal domain-containing protein	NA	NA	NA	NA
WP_010997822.1\|4434585_4436355_-	ribonuclease J	NA	NA	NA	NA
WP_010997823.1\|4436670_4437555_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_010997824.1\|4437972_4439016_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010997825.1\|4440004_4441420_+	trigger factor	NA	NA	NA	NA
WP_010994426.1\|4441722_4442685_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_010997826.1\|4443274_4443973_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.7e-53	54.4
WP_010997827.1\|4443982_4445320_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.2e-137	56.7

DBSCAN-SWA_5

5176371 : 5247775

Chrysochromulina_ericina_virus(10.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044522157.1\|5176371_5177202_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010998463.1\|5177361_5177643_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_044522158.1\|5177909_5178272_+	hypothetical protein	NA	NA	NA	NA
WP_010998465.1\|5178288_5179461_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_010998466.1\|5179676_5179883_-	hypothetical protein	NA	NA	NA	NA
WP_010998467.1\|5180356_5180695_+	anti-sigma factor antagonist	NA	NA	NA	NA
WP_010998468.1\|5180845_5183485_+	TIGR03960 family B12-binding radical SAM protein	NA	NA	NA	NA
WP_010998469.1\|5184040_5186104_+	ribonuclease E/G	NA	NA	NA	NA
WP_010998470.1\|5186374_5187052_+	ribonuclease HII	A0A0N9QYD4	Chrysochromulina_ericina_virus	6.4e-25	42.2
WP_010998471.1\|5187131_5187719_-	DUF1997 domain-containing protein	NA	NA	NA	NA
WP_010998472.1\|5188156_5189029_+	prephenate dehydratase	NA	NA	NA	NA
WP_010998473.1\|5189069_5189720_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010998474.1\|5189921_5190239_-	30S ribosomal protein S10	NA	NA	NA	NA
WP_010998475.1\|5190440_5191670_-	elongation factor Tu	A0A1V0SC62	Catovirus	4.0e-09	27.9
WP_010998476.1\|5191692_5193771_-	elongation factor G	A0A1B0RXH7	Streptococcus_phage	1.4e-67	27.6
WP_010998477.1\|5193911_5194382_-	30S ribosomal protein S7	NA	NA	NA	NA
WP_006196398.1\|5194882_5195266_-	30S ribosomal protein S12	NA	NA	NA	NA
WP_010998478.1\|5195362_5195701_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_010998479.1\|5195931_5196354_-	phosphomannose isomerase type II C-terminal cupin domain	NA	NA	NA	NA
WP_010998480.1\|5196743_5198726_-	phosphodiester glycosidase family protein	NA	NA	NA	NA
WP_010998481.1\|5199606_5204286_+	glutamate synthase subunit alpha	NA	NA	NA	NA
WP_010998482.1\|5204371_5205289_-	polysaccharide deacetylase family protein	A0A2K9L357	Tupanvirus	1.5e-08	27.8
WP_010998483.1\|5206502_5208941_+	hypothetical protein	NA	NA	NA	NA
WP_010998484.1\|5208963_5210511_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_010998485.1\|5210535_5211723_-	hypothetical protein	NA	NA	NA	NA
WP_010998486.1\|5211893_5213093_-	hypothetical protein	NA	NA	NA	NA
WP_010998487.1\|5213219_5214524_-	membrane protein	NA	NA	NA	NA
WP_044523268.1\|5214907_5216104_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_010998489.1\|5216551_5216749_+	hypothetical protein	NA	NA	NA	NA
WP_010998490.1\|5216796_5217057_-	MoaD/ThiS family protein	NA	NA	NA	NA
WP_010998491.1\|5217237_5218569_+	Rieske 2Fe-2S domain-containing protein	A0A076FFT9	Aureococcus_anophage	9.9e-38	28.0
WP_010998492.1\|5218614_5219238_-	J domain-containing protein	NA	NA	NA	NA
WP_010998494.1\|5219510_5220104_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.7e-45	52.8
WP_010998495.1\|5220183_5220846_-\|protease	ATP-dependent Clp protease proteolytic subunit	G3M9Z8	Bacillus_virus	1.4e-21	37.7
WP_010998496.1\|5221096_5222353_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010998497.1\|5222349_5223633_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010998498.1\|5223992_5224205_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_010998499.1\|5224206_5224455_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_044522160.1\|5224824_5225271_+	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_044522163.1\|5225286_5225862_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_010998502.1\|5225916_5229903_-	magnesium chelatase subunit H	NA	NA	NA	NA
WP_010998503.1\|5230473_5232168_+	protein kinase	A0A2H4UVE2	Bodo_saltans_virus	1.3e-13	25.1
WP_010998504.1\|5232309_5232876_-	hypothetical protein	NA	NA	NA	NA
WP_010998505.1\|5233496_5235290_+	serine/threonine protein kinase	B0FEC2	Escherichia_phage	2.5e-07	23.3
WP_010998506.1\|5235340_5235625_-	DUF2470 domain-containing protein	NA	NA	NA	NA
WP_010998507.1\|5235844_5236600_+	serine/threonine protein phosphatase	NA	NA	NA	NA
WP_190449762.1\|5236719_5237577_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_044522166.1\|5237863_5238394_+	DUF4330 domain-containing protein	NA	NA	NA	NA
WP_010998511.1\|5238615_5240355_-	fibronectin-binding domain-containing protein	A0A0P0YM59	Yellowstone_lake_phycodnavirus	3.2e-12	38.5
WP_010998512.1\|5240521_5241325_-	hypothetical protein	NA	NA	NA	NA
WP_010998513.1\|5241580_5242849_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_010998514.1\|5244478_5244979_-	RNA-binding protein	NA	NA	NA	NA
WP_010998515.1\|5245591_5247775_-\|protease	M48 family metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_003276

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_003276_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003276_1

52724-52840

Orphan

A:N

Consensus_repeat	Method
TTTAACTATTCTTCTCAAACTCCACTTCAGACAAGACTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003276_1

>merge|NC_003276|1|52724-52840|CRISPRCasFinder
TTTAACTATTCTTCTCAAACTCCACTTCAGACAAGACTTAGAAGGATTTTACCTTTTATCAACACTATTTTCCTAATTTAACTATTCTTCTCAAACTCCACTTCAGACAAGACTTAG

>NC_003276|1|1|52724-52840|CRISPRCasFinder
TTTAACTATTCTTCTCAAACTCCACTTCAGACAAGACTTAG	AAGGATTTTACCTTTTATCAACACTATTTTCCTAA
TTTAACTATTCTTCTCAAACTCCACTTCAGACAAGACTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_003276.1\|WP_044523708.1\|53469_54024_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_003276.1\|WP_149028808.1\|54375_54960_+\|aminoglycoside-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|371202
NC_003276.1\|WP_010999622.1\|48310_48724_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999618.1\|46549_46966_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_044523588.1\|58130_61700_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NC_003276.1\|WP_010999619.1\|46958_47675_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999615.1\|44748_45315_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379326
NC_003276.1\|WP_010999623.1\|48720_49425_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999633.1\|63088_63775_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_003276.1\|WP_010999635.1\|64654_65068_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NC_003276.1\|WP_010999621.1\|48145_48301_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999617.1\|46026_46368_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999631.1\|55236_57483_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NC_003276.1\|WP_044523710.1\|64267_64642_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999637.1\|66196_66664_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999625.1\|51294_52296_-\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999636.1\|65164_66193_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_003276.1\|WP_010999624.1\|49436_51257_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999627.1\|53240_53402_+\|hypothetical-protein	unknown	unknown	unknown
NC_003276.1\|WP_010999616.1\|45337_45601_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003276.1\|WP_044523588.1\|58130_61700_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	7.70125e-23
NC_003276.1\|WP_149028808.1\|54375_54960_+\|aminoglycoside-nucleotidyltransferase	gnl\|CDD\|371202	pfam10706, Aminoglyc_resit, Aminoglycoside-2''-adenylyltransferase. This family is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents.	3.81309e-122
NC_003276.1\|WP_010999631.1\|55236_57483_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NC_003276.1\|WP_010999636.1\|65164_66193_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.97954e-37
NC_003276.1\|WP_044523708.1\|53469_54024_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.27997e-22
NC_003276.1\|WP_010999615.1\|44748_45315_-\|hypothetical-protein	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.000992604
NC_003276.1\|WP_010999635.1\|64654_65068_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	3.03224e-15
NC_003276.1\|WP_010999633.1\|63088_63775_+\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	6.93221e-45

>NC_003276.1|WP_010999625.1|51294_52296_-|hypothetical-protein
MTWFETLTGFAERSPQQVRENMTVDGELLKSHVNGKVMICGQLETPSLAELRERVLKSGYPKGKITLQEVVANVQDLHINEVNANSLFQVASQFNLLEMTSPNVTPEYGVGIYENDFTQGPACAVAAGAGTIYRNYFVKVNGQIGQSATNQIDCLKDIGAALGNQDNRLWEMRNGYALPSRSGLAEISNRLEALNEKEFDELRKLLRIGIQWHTQVTLNDCKHKVSQAYCSALPVAYSDRFSDLWTKFAQLVLEASYEATICSAILNWRKNGNNKLFLTLLGGGAFGNQIDWIVAAIQRALNIYKNVELDVAIVSYGSSKPYIQKLVNQYKSL
>NC_003276.1|WP_010999624.1|49436_51257_+|hypothetical-protein
MQQTIPMLGTKETALLRGDYPSIEYLEAGNIASWLQERQDQLLIRARDERNGMNLAKFITLATAATGAVCYATSPLAPIGAVVAGIGYLWSIVQDINDTHQFAPIPFIRGNFVEFLSAMGDSVARDEYFANKNELADLMLHLEPMEKYEFAMLKQSSHVVCEYLSVVEPGKRFYAYRWLLDWFIQLRGQFPTRDQLSGHLAQVTIDPRVNYQQVTVIQEAIKPQNLGIPPARFVELPSAVNQPVEDKTVTIIPSAQAPSISNPSLGTVVSSYEPTPTAIVNTEISTYTSKPQRQYDLIGHIAKKVTNMLWVGVPGSGKGITISNAIDAIKRSHRGIHIFYIDPKGDEKETGYFTGRVDTLKRAKILEMSPIEAVKWVKDCFAEFQLITGDKLIILDEGTAVCSKFKNAKNEIGWLKDKIISYCSCGDSSGWHFWIVVQNPHTDDLGISGGLRSQLTSVALVHPDNVPAYNAMIATQLIPSDRKITSTQVMEIAAQSPVGRAVYYGGLNEWFPMQLLQNFSGYDRDNKKFLDTPKINDSSQVADLDATETSQSQSQRVLALLERTTASSLDEFIYNELKLDGTQADLVRVGIEKLLKDSPLKYKFDG
>NC_003276.1|WP_010999623.1|48720_49425_+|hypothetical-protein
MSNPTPTTPNPQPNPQNKPQRGLGEYLELLARWIVELISLPVVFVSHIVAQFVTPGTPGYRLVGAIGFWIGTLLSTDGIWQVLFQGKPIFPWFETEWIGWLGWLQLPFNPLFWISFGISALVQVMEARTLRGKDPIQARSEFEESKQYALGSKPTGNIDLTVALWGDYKRAGMKERNAGGAIALFFWVLDITTTFVGRWPFRYTDPGTILGCFAYNCASMMAGEIGYNIWKITK
>NC_003276.1|WP_010999622.1|48310_48724_+|hypothetical-protein
MKYQKQALLGLLGMGLIASPWLSKLPAQFHTYNTATTIQQSEEIERIKAEERAATSQRINELGVSPSFKKLRMQNYLDTHSRNPRPNTTGYLEDELVFVYDSTGRCIGRIEERQWKWKYRFRNACTDSPLYSDAKNS
>NC_003276.1|WP_010999621.1|48145_48301_+|hypothetical-protein
MERQILDAIGFGNPQIEPDPKPVVEQVVVQNEQIPNTIDNFGKILDQYEPA
>NC_003276.1|WP_010999619.1|46958_47675_+|hypothetical-protein
MSNKDTFTRQELFELLSASYPPEKIIAGLQELAKTDPSIDPNGEEFDVEVSDRLERLFNLAETVIDQAKLLGAGGSLTNLETQAINKTVEQLKAQGISGETFRAFLEIAAGTTVAQAFAVHNFKSQLFDDISQELDVQLLQERTQAGVEEISLIYQIIKDPQTKEKIISEYGLKTPQQLKNEVQTLTGTSTPEFDPLKFFEEVGLPVEAKKSVQPKTIQDLRTLTQHLFKRQPNQATA
>NC_003276.1|WP_010999618.1|46549_46966_+|hypothetical-protein
MNQSWREELFNQETTNSALNPLVLPMTNAQSLRILDICYRTWGRWEEVAQTIAQYKLAQIQMKNFAQEHSLRAPPILPYQVWVVGKIGEIFCGLAQGTNKLNLAKAIVGANKSLYSRKEFEAEQIRFTQPLTGELQNV
>NC_003276.1|WP_010999617.1|46026_46368_+|hypothetical-protein
MVRGLENKFNHQEEVFHIEDEQKPKNQIEEIAVRAVKLAGLSVRLGDYEFVSTSVRLLEPFIKAWYAKAGIEPPSTATISRWFYDSPPKWAIALLVNEKEKIFEKVARKCKIP
>NC_003276.1|WP_010999616.1|45337_45601_-|hypothetical-protein
MPNYGYQNVSLKNEVIAVLDTMPGKSRAEKIERMIKSTNDALLRVGSLPDEPPEAVIQYVLDQIPSWDSNNILELAIALLKHVQQVK
>NC_003276.1|WP_010999615.1|44748_45315_-|hypothetical-protein
MQSTVRLIRTQDNVVVEADLVELQTKHAHDYNCTWKEQLRLFTQEDKFWDWEFKLEFVINKQPNREGYAIEYEDETQGLLLIETQMHGSRLVPGRRLVYVDGIASAPWNREIIQRPPKYKGVGTALLAFARTRSLELGFEGRVGLHSLPGVEKFYDNQGMVDLGEDEDYDDLVYFEYGLWRSSKLGVR
>NC_003276.1|WP_010999627.1|53240_53402_+|hypothetical-protein
MMFLELTISSGDGLTSGIGIYLTIPDSATIELIAIVQGDTYSSLDASYFNYLG
>NC_003276.1|WP_044523708.1|53469_54024_+|GNAT-family-N-acetyltransferase
MKIVTKRFLLRDFVELDRLPFLNYQADPRSQIFSESNQASPENSARLFETFCTWACEQPRLNYQLAIVQRREPYALVGCCGLRGRGFDAGEMELGIELAPDYWGRYAYAIEVGSALLDFGFRELGLNVISGSTVSANVRIARLAKWSGAEVVTIRPGSRWMSQRGWSEVNWQITRAQWNSRITV
>NC_003276.1|WP_149028808.1|54375_54960_+|aminoglycoside-nucleotidyltransferase
MRIAYVYPLTLATLETSMMMNDLHIELIHQLFAASDKINLPLWLQGGWAIDAKLHRITREHEDIDIAYPGDRHAEFLCLLHAFGCVITEQTSYGFLAQSQGILLDCEPCVRIADDYELEGLPPGTCPLEPNGTLGGKLVRCTSWEAILWDYFYYLEEVPQSEWRPKDFHSFALAKDSFGEAATHNLHEQFKRLY
>NC_003276.1|WP_010999631.1|55236_57483_-|ATP-dependent-RecD-like-DNA-helicase
MSTLPTAQQSSVQPHYETITGVVERLTFHSEESGYTVARLTRSRSTDLTTIVGSFANIQPGQTLQLTGFWKDHPQYGPQFNVTNYHETKPATLTGIEKYLGSGLIKGVGPVTARRIVAHFGLETLDIIENQIDRLIEVQGIAKKRIKLIKNAWETQKAIKEVMVFLQTHGVSTTYAVKIYKQYQDQAIATVTANPYQLATDIYGIGFLTADKIARNLGVPTSSEFRYSAGIIHALSEAAEDGHCYLPQPELIEKVIKLLTTDDHQPTEDAIADIIKDMSTKEELIREFVRDSYGEKLLLCYKPSFFHTEQNLAQLISRRLRQQVKQDIPRVRTWLDRFMSSRKIELSPQQQKAVEMAAYSPVMVLTGGPGVGKTFTTHTIVSLWKAMSKSIALAAPTGRAAQRLSEMTGLEAKTIHRLLEFDPKTMGFKRDNENPLPFSAIIADEASMLDLFLAHSLVKAVAQGAQLLLVGDIDQLPSVGPGKVLADLITSLQVPVVKLTQVFRQAQQSAIVTAAHQINQGDYPNIEPISDNPQSDCLWHGGGHSPEHGVQAICELVGEFIPRLGFNPSTDVQVLSPMSRGLVGTRNLNAVLQQLINPPAQGKVEINRGGMVLREGDRVIQQMNDYDREVFNGDLGTILSIDTEEQEVTVEYGGRAVVYDYADLNEITLAFSISVHKSQGGEFPVVIFPLFMQHYVMLSRNLFYTGLTRARKLAIVVGSKKAIALAVRTTDDQQRYTRLWQRLLQSMG
>NC_003276.1|WP_044523588.1|58130_61700_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MINQFYFQWWWRLGLFLGLTCTTNLKALAQVTADQTLGTQVTDIGLYSVIQGGTTVGNTNLFHSFGSFNIPNGGAAIFLNDPNLTNIFARVTGGTPSDIQGLIYAQGTTNLFLMNPNGIIFGRNAQLNVGGSFVATTANAIQFPGGAEFSLTSSVPSGNTLLSVNPTAFLFNQIANQGANSIENRGSLQVSDNKSLILLGGNVAPTPDASGQILMDGGIIEALGGRVEIGGLTAPGSVGLQVNDDNLSLAFPNGVARTDISLINNSNVATFVLGTEGDDIVFHAHNFNLLNFSSLQTFLISNQGNPETKTSDISINATGIVTIAESSFIGNVSLGLGNSGNINIVGQSLKLINSGWLIINSQQGNSGIINVIVDDTIALSGKNADFPSSLIFSDGGINIQARNLSLADGSFINSVSIRNLLLADGVLTNPNNLFVGNSGEIKIQATDYISLNESSITARTIGEGNAGNLSIITNRLSLDNNSSITSDTSGEGNAGNLSIITNRLNLDNNSIITSGSSGSGNGSNLNINARDIFLNQSYISTTSLMGLGISNVGNAGNINIQTERITITNRGSISSSSGEPAPGQIIGSGGNINVTATDFIEIDPKGLINAKDATTGFVARTGSSSRAGDITLNTKNLIVRDGGQITVDASNNLGGQAGNITINASDSVELISSNLNQGSLISTSVFAVNDNVVAVGKGGELTINTGKLLLIKGVISSGTDGQGNAGNIFIFSNDEVVIDNGWIDSNVGSSGVGNGGDINIQTPKLTLINGGRISSSVFGALEDLPAVQGKGGRIRINATNAVNISGLNADGITSAILTETQKGAFGQGGDIIVNTDYFRLADKATISSATGNSSNAGNVTINARVVEVLNGGVLVTGTMSSGKAGDITINATDNITIFSNTGLTALLAGTTSSGGGGNISLFTTDFNLSATNSNLPYPIAVATSSLGEGVAGDINIVATGNFNANNGLVSASSEQSGGGHININARNIRLRNNSDIRTDLSGGNGKGGDISLTADIIIALEDSDILAFAPEGQGGDIRFNTRAVFSDSLYSPRQTTSDRNSLQSLSNNNRSDINATGTVSGNIIGVPDISFIQNGLTELENNPIDTNALIANSCIARSPKQEGTFIITGTGSLPHRPGEAAASSYPTGDVQSVTNNSAASSWKKGELIVEPQGVYRLANGDLVMSRECL
>NC_003276.1|WP_010999633.1|63088_63775_+|HAD-family-hydrolase
MAYQGVILDVDGTLVISNDAHAQAWVEAFAEFGYEVKFEQVRPLIGMGGDQIIPQFAPGLSDEQGKGKEIADQRKQLIINKFAKNLAPTNGTRQLILKMQSLGLHLIIASSASSQELSVLLKAAQVEDLLSQDEATTSSDAEASKPAPDIVEVALNRLNIEPSEVVMLGDTPYDITSANQAGIKVIALRCGGFDDSQLKDAIAIYDDPADLLTQYQHSPLATEAMTKA
>NC_003276.1|WP_044523710.1|64267_64642_+|hypothetical-protein
MAQLTIQIPDELAQRLEPLQSRLPELLWLLLDIGGEQNKEQPKLNTQTLEIPEVYQEVLDFLIKRPTPEEIISFKVSARAQIHLQELLEKNRSGSLSQMELAQLDVYEQLEHLMILLKARAMEK
>NC_003276.1|WP_010999635.1|64654_65068_+|HNH-endonuclease
MGSTSISTELRKLVISRASERCEYCLIHQDFSIYTHEVDHIIAVKHGGETVKDNLALSCLTCNRHKGSDFATIDSTTGEIVPLYNPRRQIWEEHFYFEGVRIEGKSQVGQATTRLLQFNLANRLLQRQVLMSQGKYP
>NC_003276.1|WP_010999636.1|65164_66193_+|site-specific-integrase
MNYNADSLPPIKLISLEDKVLPLAIQKSKSRSAKIAAPTDIRWIKVLEFLRSTNLAPNSRKLYERELKRFLGWTQLHYHELRPRHLGLYKEYLRDEVKTDSGKPLSKASINAGVAALKSFFNWMCYTYPEIITTNPTLGIKLEKVPLPPAQSLTDEQMERVWSALELLGETKERDTALVHILSHGLRAGEIVQLNVGSFDGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRQQQGEELNSLTPLMISHHASYKGDRLSYHGIYFAVEKIGEFAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEKAFRRYTLRSEQEAAIAAYYRAIGEVEAE
>NC_003276.1|WP_010999637.1|66196_66664_+|hypothetical-protein
MPKPLDPKCQLCAKLPSAKAKVLHGREGDNCWNPKVCHNRRSFYRNRNKDDSLGIEAIAVAPPETYFAVLYLYKEPGDKPLHALGAELWLGQKPICRLEPIHCFGLTAGKIRAYTDKVLQAFAKEYNVTLYQYKEMFEIAPTHCPVRPCPLHPEP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003276_1	1.1\|52765\|35\|NC_003276\|CRISPRCasFinder	52765-52799	35	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	52765-52799	0	1.0
NC_003276_1	1.1\|52765\|35\|NC_003276\|CRISPRCasFinder	52765-52799	35	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	52689-52723	1	0.971

1. spacer 1.1|52765|35|NC_003276|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 0, identity: 1.0

aaggattttaccttttatcaacactattttcctaa	CRISPR spacer
aaggattttaccttttatcaacactattttcctaa	Protospacer
***********************************

2. spacer 1.1|52765|35|NC_003276|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 1, identity: 0.971

aaggattttaccttttatcaacactattttcctaa	CRISPR spacer
aaggattttaccttttatcaacactattttcctag	Protospacer
**********************************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72661 : 155356

Natrialba_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010999645.1\|72661_73786_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.8e-73	43.8
WP_010999646.1\|73834_74236_+\|transposase	IS200/IS605-like element ISNsp3 family transposase	A0A1L2BWN1	Bacteriophage	1.3e-20	38.2
WP_010999647.1\|74791_75037_+	hypothetical protein	NA	NA	NA	NA
WP_010999648.1\|75168_75615_+	hypothetical protein	NA	NA	NA	NA
WP_044523597.1\|75790_80056_+	strawberry notch family protein	A0A076FMQ0	Aureococcus_anophage	1.4e-24	25.5
WP_044523598.1\|80565_80763_+	DUF2811 domain-containing protein	NA	NA	NA	NA
WP_010999651.1\|80829_81300_-	hypothetical protein	NA	NA	NA	NA
WP_010999652.1\|81576_81900_+	hypothetical protein	NA	NA	NA	NA
WP_010999653.1\|81968_82283_+	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_044523713.1\|82450_83065_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_010999655.1\|83222_83783_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_126987711.1\|83844_84138_-	hypothetical protein	NA	NA	NA	NA
WP_049942536.1\|84270_85473_+	AIPR family protein	NA	NA	NA	NA
WP_010999657.1\|85584_85908_+	hypothetical protein	NA	NA	NA	NA
WP_010999658.1\|85978_87091_-	hypothetical protein	NA	NA	NA	NA
WP_010999659.1\|87137_87446_-	HNH endonuclease	Q8JKZ9	Natrialba_phage	7.4e-05	40.7
WP_010999660.1\|87628_88111_+	hypothetical protein	NA	NA	NA	NA
WP_010999661.1\|88187_89216_+	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_010999662.1\|89402_89984_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_010999663.1\|90114_90438_+	hypothetical protein	NA	NA	NA	NA
WP_010999667.1\|93952_94288_-	hypothetical protein	NA	NA	NA	NA
WP_010999668.1\|94504_94936_-	hypothetical protein	NA	NA	NA	NA
WP_010999669.1\|94970_95825_-	hypothetical protein	NA	NA	NA	NA
WP_010999670.1\|97541_98057_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_010999671.1\|98233_98425_-	N-acetyltransferase	NA	NA	NA	NA
WP_010999673.1\|99885_100251_-	hypothetical protein	NA	NA	NA	NA
WP_010999674.1\|100269_100578_-	HNH endonuclease	Q8JKZ9	Natrialba_phage	9.7e-05	40.7
WP_010999675.1\|100621_100777_-	hypothetical protein	NA	NA	NA	NA
WP_010999677.1\|101177_101789_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_149028813.1\|102083_104081_-	hypothetical protein	NA	NA	NA	NA
WP_010999679.1\|104698_106102_-	NCS2 family permease	NA	NA	NA	NA
WP_010999681.1\|107974_109735_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_010999682.1\|109772_110882_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_010999683.1\|110885_112841_+	NACHT domain-containing NTPase	NA	NA	NA	NA
WP_010999684.1\|112927_115078_+	NACHT domain-containing protein	NA	NA	NA	NA
WP_010999685.1\|115304_124556_-	putative Ig domain-containing protein	NA	NA	NA	NA
WP_010999686.1\|124767_128337_+	NACHT domain-containing protein	NA	NA	NA	NA
WP_010999687.1\|128474_135368_-	hypothetical protein	NA	NA	NA	NA
WP_010999688.1\|135611_136025_-	hypothetical protein	NA	NA	NA	NA
WP_010999689.1\|136219_137137_+	restriction endonuclease	NA	NA	NA	NA
WP_010999690.1\|137173_139294_-	AAA family ATPase	NA	NA	NA	NA
WP_158303730.1\|139513_139672_-	hypothetical protein	NA	NA	NA	NA
WP_010999691.1\|139637_140741_-	hypothetical protein	C8CGZ1	Staphylococcus_phage	3.9e-11	34.3
WP_010999693.1\|141678_143313_-	hypothetical protein	NA	NA	NA	NA
WP_044523605.1\|143486_143819_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010999695.1\|144201_145203_+	hypothetical protein	NA	NA	NA	NA
WP_010999696.1\|145280_145607_+	hypothetical protein	NA	NA	NA	NA
WP_010999697.1\|145991_146198_+	hypothetical protein	NA	NA	NA	NA
WP_010999698.1\|146307_147120_+	hypothetical protein	NA	NA	NA	NA
WP_010999699.1\|147194_147389_+	hypothetical protein	NA	NA	NA	NA
WP_010999700.1\|147395_147650_+	hypothetical protein	NA	NA	NA	NA
WP_010999701.1\|147646_148105_+	DUF1392 domain-containing protein	NA	NA	NA	NA
WP_044523608.1\|148978_150187_+\|transposase	transposase	A7RAM2	Paramecium_bursaria_Chlorella_virus	5.9e-29	33.2
WP_044523722.1\|150405_151617_-\|transposase	transposase	A0A0H3UZC2	Geobacillus_virus	1.3e-76	44.7
WP_010999706.1\|151721_152126_+\|transposase	IS200/IS605 family transposase	A0A7E6	Microcystis_virus	1.2e-31	53.1
WP_010999707.1\|152232_152820_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_044523611.1\|152916_153261_-	hypothetical protein	NA	NA	NA	NA
WP_084789150.1\|153929_154133_+	recombinase family protein	F9VHY9	Thermus_phage	4.1e-12	51.5
WP_010999710.1\|154129_155356_+\|transposase	transposase	G3MB42	Bacillus_virus	1.1e-78	41.7

DBSCAN-SWA_2

211820 : 270177

Nostoc_phage(25.0%)

integrase,transposase

attL 208570:208589|attR 235329:235348

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
208570:208589	attL	NA	NA	NA	NA
WP_010999758.1\|211820_212780_+\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	7.6e-56	42.6
WP_010999759.1\|213097_213703_+	hypothetical protein	NA	NA	NA	NA
WP_011316312.1\|214202_214502_+	hypothetical protein	NA	NA	NA	NA
WP_010999761.1\|214523_217343_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_010999762.1\|217346_218063_+	hypothetical protein	NA	NA	NA	NA
WP_010999763.1\|218166_219279_+	hypothetical protein	NA	NA	NA	NA
WP_010999764.1\|219390_220185_+	hypothetical protein	NA	NA	NA	NA
WP_010999765.1\|220181_221723_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_010999766.1\|221719_222460_+	hypothetical protein	NA	NA	NA	NA
WP_010999767.1\|222456_223653_+	hypothetical protein	NA	NA	NA	NA
WP_010999768.1\|223655_225425_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_010999769.1\|225430_225922_+	hypothetical protein	NA	NA	NA	NA
WP_010999770.1\|226045_229729_+	DUF3854 domain-containing protein	NA	NA	NA	NA
WP_010999771.1\|229751_230537_+	hypothetical protein	NA	NA	NA	NA
WP_010999774.1\|231825_232482_+	response regulator transcription factor	NA	NA	NA	NA
WP_010999775.1\|232482_233079_-	hypothetical protein	NA	NA	NA	NA
WP_126987610.1\|233078_233765_-	hypothetical protein	NA	NA	NA	NA
WP_010999777.1\|233856_234903_-	hypothetical protein	NA	NA	NA	NA
WP_010999778.1\|234934_235261_-	hypothetical protein	NA	NA	NA	NA
WP_010999779.1\|235647_236310_+	hypothetical protein	NA	NA	NA	NA
235329:235348	attR	NA	NA	NA	NA
WP_149028810.1\|236330_236939_-	hypothetical protein	NA	NA	NA	NA
WP_010999781.1\|236962_237502_-	hypothetical protein	NA	NA	NA	NA
WP_010999782.1\|237691_241324_-	DUF3854 domain-containing protein	A0A2R3ZRI1	Marseillevirus	6.3e-18	22.8
WP_010994068.1\|242108_243317_+\|transposase	transposase	A0A191SB13	Nostoc_phage	5.7e-234	100.0
WP_010999783.1\|243756_245289_-	NACHT domain-containing protein	NA	NA	NA	NA
WP_010994068.1\|245746_246955_+\|transposase	transposase	A0A191SB13	Nostoc_phage	5.7e-234	100.0
WP_149028815.1\|247065_248706_+	protein kinase	M1HZT4	Acanthocystis_turfacea_Chlorella_virus	1.1e-06	27.3
WP_010999786.1\|248762_249788_+	hypothetical protein	NA	NA	NA	NA
WP_010999787.1\|249748_252217_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_010999788.1\|252216_254748_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_010999789.1\|254828_255332_-	VOC family protein	NA	NA	NA	NA
WP_010999790.1\|255925_256207_-	hypothetical protein	NA	NA	NA	NA
WP_126987702.1\|256518_257169_-	hypothetical protein	NA	NA	NA	NA
WP_010999792.1\|257307_258237_+	hypothetical protein	NA	NA	NA	NA
WP_044523631.1\|258511_258694_+	hypothetical protein	NA	NA	NA	NA
WP_044523747.1\|259759_261334_+	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	8.4e-60	31.1
WP_010999795.1\|261291_262620_+	hypothetical protein	A0A0U4J920	Pseudomonas_phage	6.0e-43	32.0
WP_010999796.1\|263246_265067_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010999797.1\|265164_265677_-\|transposase	transposase	NA	NA	NA	NA
WP_010999798.1\|266190_267414_-\|transposase	transposase	A0A0H3UZC2	Geobacillus_virus	4.6e-106	53.2
WP_010999800.1\|267884_268082_+	hypothetical protein	NA	NA	NA	NA
WP_010999802.1\|268527_270177_+\|transposase	IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

280758 : 333282

Aphanizomenon_phage(18.18%)

protease,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010999818.1\|280758_281139_-\|protease	clan AA aspartic protease	NA	NA	NA	NA
WP_044523651.1\|281135_281408_-	hypothetical protein	NA	NA	NA	NA
WP_010999820.1\|281444_282767_-	hypothetical protein	A0A2H4PAU8	Aphanizomenon_phage	4.9e-45	53.8
WP_010999504.1\|282867_284361_-\|transposase	transposase	NA	NA	NA	NA
WP_010999821.1\|284467_284944_-	DUF1392 family protein	NA	NA	NA	NA
WP_010999822.1\|284940_285657_-	DNA cytosine methyltransferase	A0A1L2BX52	Bacteriophage	1.3e-31	33.5
WP_010999823.1\|285653_286046_-	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	1.4e-19	40.8
WP_010999824.1\|286051_286435_-	hypothetical protein	NA	NA	NA	NA
WP_010999825.1\|286525_286849_-	hypothetical protein	NA	NA	NA	NA
WP_010999826.1\|286848_288213_-	replicative DNA helicase	A0A2H4PAV8	Aphanizomenon_phage	9.7e-97	43.7
WP_010999827.1\|288300_289635_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010999829.1\|290452_291736_-	HNH endonuclease	Q331Y3	Clostridium_botulinum_C_phage	1.2e-32	34.7
WP_126987699.1\|292007_292313_+	hypothetical protein	NA	NA	NA	NA
WP_010999832.1\|292954_293587_-	adenine-specific DNA methyltransferase	U5XHP0	Phormidium_phage	2.8e-38	43.5
WP_044523761.1\|293583_293787_-	hypothetical protein	NA	NA	NA	NA
WP_010999835.1\|294120_294375_-	hypothetical protein	NA	NA	NA	NA
WP_010999836.1\|294462_294822_-	hypothetical protein	NA	NA	NA	NA
WP_010999837.1\|294850_295162_-	hypothetical protein	NA	NA	NA	NA
WP_010999838.1\|295222_296161_-	hypothetical protein	A0A1L2BWW5	Bacteriophage	2.1e-18	40.2
WP_010999839.1\|296185_296644_-	DUF1392 domain-containing protein	NA	NA	NA	NA
WP_010999840.1\|296665_297499_-	hypothetical protein	NA	NA	NA	NA
WP_010999841.1\|297604_297802_-	hypothetical protein	NA	NA	NA	NA
WP_010999842.1\|297794_298109_-	hypothetical protein	NA	NA	NA	NA
WP_010999843.1\|298223_299228_-	hypothetical protein	NA	NA	NA	NA
WP_010999844.1\|299438_299765_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010999845.1\|299831_300014_+	hypothetical protein	NA	NA	NA	NA
WP_010999846.1\|300018_300399_+	hypothetical protein	NA	NA	NA	NA
WP_010999847.1\|300776_302987_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	7.7e-35	27.1
WP_010999849.1\|306307_308449_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	F2Y2R6	Organic_Lake_phycodnavirus	8.0e-21	30.5
WP_010999850.1\|308788_310237_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_149028811.1\|312032_312122_-	hypothetical protein	NA	NA	NA	NA
WP_010999853.1\|312380_313187_+	hypothetical protein	NA	NA	NA	NA
WP_084789154.1\|314875_315400_+	calcium-binding protein	NA	NA	NA	NA
WP_044523664.1\|315699_331593_+	putative Ig domain-containing protein	A0A0K2FL64	Brevibacillus_phage	6.8e-16	29.3
WP_010999855.1\|332061_333282_+\|transposase	ISL3 family transposase	A0A2R2ZGN7	Clostridioides_phage	6.8e-25	25.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage