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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_006509 Geobacillus kaustophilus HTA426 plasmid pHTA426, complete sequence 0 crisprs NA 0 0 0 0
NC_006510 Geobacillus kaustophilus HTA426, complete genome 6 crisprs csa3,c2c10_CAS-V-U3,DEDDh,RT,cas3,DinG,cas14k,cas14j 0 6 14 0

Results visualization

1. NC_006510
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006510_1 354866-355494 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006510_2 1983730-1984092 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006510_3 1985772-1985869 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006510_4 2880233-2880331 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006510_5 2928251-2928333 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_006510_6 3279216-3279715 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_006510_6 6.7|3279650|36|NC_006510|CRISPRCasFinder,CRT,PILER-CR 3279650-3279685 36 NC_019544 Deep-sea thermophilic phage D6E, complete genome 36651-36686 0 1.0
NC_006510_6 6.5|3279516|36|NC_006510|CRISPRCasFinder,CRT,PILER-CR 3279516-3279551 36 NC_009552 Geobacillus virus E2, complete genome 8884-8919 1 0.972
NC_006510_1 1.1|354895|39|NC_006510|PILER-CR 354895-354933 39 NC_029073 Geobacillus virus E3, complete genome 134502-134540 2 0.949
NC_006510_1 1.10|354896|38|NC_006510|CRISPRCasFinder,CRT 354896-354933 38 NC_029073 Geobacillus virus E3, complete genome 134502-134539 2 0.947
NC_006510_1 1.13|355100|38|NC_006510|CRISPRCasFinder,CRT 355100-355137 38 NZ_AP022559 Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence 30813-30850 2 0.947
NC_006510_1 1.4|355099|39|NC_006510|PILER-CR 355099-355137 39 NZ_AP022559 Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence 30812-30850 3 0.923

1. spacer 6.7|3279650|36|NC_006510|CRISPRCasFinder,CRT,PILER-CR matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 0, identity: 1.0

acgagccgagcggttcgggccgcacttttggaaaga	CRISPR spacer
acgagccgagcggttcgggccgcacttttggaaaga	Protospacer
************************************

2. spacer 6.5|3279516|36|NC_006510|CRISPRCasFinder,CRT,PILER-CR matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 1, identity: 0.972

ttatctacagtcgggaacaacctccgcgatgttggt	CRISPR spacer
ttatctacagtcgggaacaacctccgcgacgttggt	Protospacer
*****************************.******

3. spacer 1.1|354895|39|NC_006510|PILER-CR matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 2, identity: 0.949

tctcaattagctcttgaattttacaacactacaaaagac	CRISPR spacer
tctcaattagctcttgaattttacaatattacaaaagac	Protospacer
**************************.*.**********

4. spacer 1.10|354896|38|NC_006510|CRISPRCasFinder,CRT matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 2, identity: 0.947

ctcaattagctcttgaattttacaacactacaaaagac	CRISPR spacer
ctcaattagctcttgaattttacaatattacaaaagac	Protospacer
*************************.*.**********

5. spacer 1.13|355100|38|NC_006510|CRISPRCasFinder,CRT matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 2, identity: 0.947

atttctttgcagcaaaggtctgccggagtgggaggaaa	CRISPR spacer
atctctttgtagcaaaggtctgccggagtgggaggaaa	Protospacer
**.******.****************************

6. spacer 1.4|355099|39|NC_006510|PILER-CR matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 3, identity: 0.923

catttctttgcagcaaaggtctgccggagtgggaggaaa	CRISPR spacer
gatctctttgtagcaaaggtctgccggagtgggaggaaa	Protospacer
 **.******.****************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 255640 : 331371 60 Moraxella_phage(10.53%) protease,tRNA,transposase NA
DBSCAN-SWA_2 337277 : 388617 37 Staphylococcus_phage(14.29%) transposase,holin NA
DBSCAN-SWA_3 529467 : 604296 98 Bacillus_phage(32.65%) head,integrase,tail,transposase,holin,tRNA,capsid,protease,terminase,portal attL 513791:513806|attR 588626:588641
DBSCAN-SWA_4 864319 : 911842 49 Tupanvirus(16.67%) coat,transposase NA
DBSCAN-SWA_5 1000482 : 1008616 10 Streptococcus_virus(33.33%) NA NA
DBSCAN-SWA_6 1719503 : 1752484 28 Streptococcus_phage(100.0%) integrase,transposase attL 1718546:1718561|attR 1756371:1756386
DBSCAN-SWA_7 1903562 : 1957794 39 Staphylococcus_phage(40.0%) transposase NA
DBSCAN-SWA_8 2270408 : 2288792 20 Diadromus_pulchellus_ascovirus(20.0%) protease,coat,transposase NA
DBSCAN-SWA_9 2319765 : 2329613 11 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 2612672 : 2671595 55 Clostridium_phage(20.0%) protease,coat,tRNA NA
DBSCAN-SWA_11 2880542 : 2940314 56 Staphylococcus_phage(40.0%) integrase,transposase,holin attL 2929634:2929691|attR 2940455:2940512
DBSCAN-SWA_12 3270831 : 3347557 57 Bacillus_phage(27.27%) integrase,transposase attL 3270092:3270110|attR 3275317:3275335
DBSCAN-SWA_13 3443333 : 3484045 42 Bacillus_phage(50.0%) protease,tRNA,coat,transposase NA
DBSCAN-SWA_14 3514219 : 3524039 8 uncultured_Mediterranean_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage