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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_007171 Staphylococcus haemolyticus JCSC1435 plasmid pSHaeC, complete sequence 0 crisprs NA 0 0 0 0
NC_007170 Staphylococcus haemolyticus JCSC1435 plasmid pSHaeB, complete sequence 0 crisprs NA 0 0 0 0
NC_007169 Staphylococcus haemolyticus JCSC1435 plasmid pSHaeA, complete sequence 0 crisprs NA 0 0 0 0
NC_007168 Staphylococcus haemolyticus JCSC1435, complete genome 3 crisprs csa3,WYL,DEDDh,cas3,DinG 2 2 12 0

Results visualization

1. NC_007168
NC_007168 04000008000001200000160000020000002400000 CRISPR 1 2 3 Self-targeting Prophage 1 2 3 4 5 6 7 8 9 10 11 12 anti-CRISPR
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007168_1 2130983-2131110 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007168_2 2402179-2402266 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007168_3 2473072-2473159 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_007168_3 3.1|2473103|26|NC_007168|CRISPRCasFinder 2473103-2473128 26 NC_007168.1 780553-780578 0 1.0
NC_007168_3 3.1|2473103|26|NC_007168|CRISPRCasFinder 2473103-2473128 26 NC_007168.1 1548206-1548231 0 1.0
NC_007168_3 3.1|2473103|26|NC_007168|CRISPRCasFinder 2473103-2473128 26 NC_007168.1 2627962-2627987 0 1.0
NC_007168_2 2.1|2402208|30|NC_007168|CRISPRCasFinder 2402208-2402237 30 NC_007168.1 2238094-2238123 2 0.933

1. spacer 3.1|2473103|26|NC_007168|CRISPRCasFinder matches to position: 780553-780578, mismatch: 0, identity: 1.0

cttaaagttgcttaatctcaatattt	CRISPR spacer
cttaaagttgcttaatctcaatattt	Protospacer
**************************

2. spacer 3.1|2473103|26|NC_007168|CRISPRCasFinder matches to position: 1548206-1548231, mismatch: 0, identity: 1.0

cttaaagttgcttaatctcaatattt	CRISPR spacer
cttaaagttgcttaatctcaatattt	Protospacer
**************************

3. spacer 3.1|2473103|26|NC_007168|CRISPRCasFinder matches to position: 2627962-2627987, mismatch: 0, identity: 1.0

cttaaagttgcttaatctcaatattt	CRISPR spacer
cttaaagttgcttaatctcaatattt	Protospacer
**************************

4. spacer 2.1|2402208|30|NC_007168|CRISPRCasFinder matches to position: 2238094-2238123, mismatch: 2, identity: 0.933

ctggggccccgaaccccaacttgcttatct	CRISPR spacer
ctggggccccgcaccccaacttgcttagct	Protospacer
*********** *************** **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_007168_3 3.1|2473103|26|NC_007168|CRISPRCasFinder 2473103-2473128 26 NZ_CP031668 Staphylococcus aureus strain 199 plasmid pPS00120.1A.1, complete sequence 6787-6812 2 0.923
NC_007168_3 3.1|2473103|26|NC_007168|CRISPRCasFinder 2473103-2473128 26 NZ_CP031671 Staphylococcus aureus strain 64 plasmid pPS00119.1A.1, complete sequence 6788-6813 2 0.923
NC_007168_3 3.1|2473103|26|NC_007168|CRISPRCasFinder 2473103-2473128 26 NZ_LR130510 Staphylococcus aureus strain BPH2760 isolate BPH2760 plasmid 2 7283-7308 2 0.923
NC_007168_3 3.1|2473103|26|NC_007168|CRISPRCasFinder 2473103-2473128 26 MN855764 Siphoviridae sp. isolate 508, partial genome 30063-30088 4 0.846
NC_007168_1 1.1|2131001|29|NC_007168|PILER-CR 2131001-2131029 29 NC_008014 Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence 148528-148556 5 0.828
NC_007168_1 1.1|2131001|29|NC_007168|PILER-CR 2131001-2131029 29 NC_020130 Lawsonia intracellularis N343 plasmid 3, complete sequence 148550-148578 5 0.828
NC_007168_1 1.1|2131001|29|NC_007168|PILER-CR 2131001-2131029 29 NZ_CP016842 Brochothrix thermosphacta strain TMW 2.1572 plasmid pL21572-1, complete sequence 14645-14673 6 0.793

1. spacer 3.1|2473103|26|NC_007168|CRISPRCasFinder matches to NZ_CP031668 (Staphylococcus aureus strain 199 plasmid pPS00120.1A.1, complete sequence) position: , mismatch: 2, identity: 0.923

cttaaagttgcttaatctcaatattt	CRISPR spacer
cctaaggttgcttaatctcaatattt	Protospacer
*.***.********************

2. spacer 3.1|2473103|26|NC_007168|CRISPRCasFinder matches to NZ_CP031671 (Staphylococcus aureus strain 64 plasmid pPS00119.1A.1, complete sequence) position: , mismatch: 2, identity: 0.923

cttaaagttgcttaatctcaatattt	CRISPR spacer
cctaaggttgcttaatctcaatattt	Protospacer
*.***.********************

3. spacer 3.1|2473103|26|NC_007168|CRISPRCasFinder matches to NZ_LR130510 (Staphylococcus aureus strain BPH2760 isolate BPH2760 plasmid 2) position: , mismatch: 2, identity: 0.923

cttaaagttgcttaatctcaatattt	CRISPR spacer
cctaaggttgcttaatctcaatattt	Protospacer
*.***.********************

4. spacer 3.1|2473103|26|NC_007168|CRISPRCasFinder matches to MN855764 (Siphoviridae sp. isolate 508, partial genome) position: , mismatch: 4, identity: 0.846

cttaaagttgcttaatctcaatattt	CRISPR spacer
tttcaagttccttaatctcaatatct	Protospacer
.** ***** **************.*

5. spacer 1.1|2131001|29|NC_007168|PILER-CR matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 5, identity: 0.828

tactat-aaaaaattataagttcttcaaaa	CRISPR spacer
-attctgaaaaaaatataaattcttcaaaa	Protospacer
 *.* * ****** *****.**********

6. spacer 1.1|2131001|29|NC_007168|PILER-CR matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 5, identity: 0.828

tactat-aaaaaattataagttcttcaaaa	CRISPR spacer
-attctgaaaaaaatataaattcttcaaaa	Protospacer
 *.* * ****** *****.**********

7. spacer 1.1|2131001|29|NC_007168|PILER-CR matches to NZ_CP016842 (Brochothrix thermosphacta strain TMW 2.1572 plasmid pL21572-1, complete sequence) position: , mismatch: 6, identity: 0.793

tactataaaaaattataagttcttcaaaa	CRISPR spacer
tttcatcaaaaattataacttcttcaaac	Protospacer
* ..** *********** ********* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 282435 : 355927 57 Streptococcus_phage(33.33%) transposase,protease NA
DBSCAN-SWA_2 947596 : 1022290 68 Staphylococcus_phage(21.74%) transposase,tRNA,protease,integrase attL 942570:942586|attR 1021823:1021839
DBSCAN-SWA_3 1142094 : 1179453 32 Staphylococcus_phage(92.86%) transposase,tRNA NA
DBSCAN-SWA_4 1446277 : 1456132 11 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_5 1648069 : 1715366 56 Staphylococcus_phage(23.53%) transposase,tRNA,protease NA
DBSCAN-SWA_6 1783656 : 1874039 100 uncultured_Caudovirales_phage(49.12%) transposase,tRNA,portal,terminase,capsid,head,integrase,holin,tail,protease attL 1806792:1806851|attR 1855730:1855840
DBSCAN-SWA_7 1931374 : 2009039 70 Streptococcus_phage(27.78%) transposase,protease NA
DBSCAN-SWA_8 2122929 : 2137416 21 uncultured_Caudovirales_phage(63.16%) terminase,integrase attL 2117673:2117691|attR 2133973:2133991
DBSCAN-SWA_9 2189006 : 2203175 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_10 2219380 : 2227528 9 Pandoravirus(12.5%) transposase NA
DBSCAN-SWA_11 2303170 : 2397948 120 Staphylococcus_phage(63.89%) transposase,tRNA,portal,terminase,capsid,head,integrase,holin,plate,tail attL 2302659:2302675|attR 2324143:2324159
DBSCAN-SWA_12 2583857 : 2618339 35 uncultured_Caudovirales_phage(38.46%) terminase,transposase,integrase attL 2613710:2613727|attR 2623744:2623761
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage