CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_006297	Bacteroides fragilis YCH46 plasmid pBFY46, complete sequence	0 crisprs	NA	0	0	0	0
NC_006347	Bacteroides fragilis YCH46, complete genome	1 crisprs	DEDDh,PD-DExK,cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6,PrimPol,WYL,RT	0	2	4	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_006347_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006347_1

2924388-2924996

Unclear

Consensus_repeat	Method
ATTTCAATTCCATAAGGTACAATTAATACA	CRISPRCasFinder
ATTTCAATTCCATAAGGTACAATTAATAC	CRT
ATTTCAATTCCATAAGGTACAATTAATAC	PILER-CR

9 spacers

cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6

The CRISPR arrays of NC_006347_1

>merge|NC_006347|1|2924388-2924996|CRISPRCasFinder,CRT,PILER-CR
GTCCTAATTCCATAAGGTACAATTAATACCAGTGCAGCACATCGTAATATCTTGCATTTTGCACAAATTTCAATTCCATAAGGTACAATTAATACCAGCTCTTTTTCGTTTGCATCAAGTGCTCTCTTTTATTTCAATTCCATAAGGTACAATTAATACACCAGCGATTCACTCGACAAATTTCTCAAACCTTTATTTCAATTCCATAAGGTACAATTAATACAATGAATAAGGATAAGAGAATACATTCTTTTACTAATTTCAATTCCATAAGGTACAATTAATACATTGCGCTTTCTGTGCGATATTGGCGAGGGTATATATTTCAATTCCATAAGGTACAATTAATACAGAGGCGTGCTTCTTCATTAAGCCTGTCTATATGAATTTCAATTCCATAAGGTACAATTAATACACAACAGGAACTTTGCCTGTACTGCTTGGAACGAAATTTCAATTCCATAAGGTACAATTAATACATCACACAGTATCACAAAGAACATAGTGATCAACCAATTTCAATTCCATAAGGTACAATTAATACACTAAAAATGTCATGGGTGGATGCTCGTTTAAATAATTTCAATTCCATAAGGTACAATTAATACT

>NC_006347|1|1|2924388-2924996|CRISPRCasFinder
GTCCTAATTCCATAAGGTACAATTAATACC	AGTGCAGCACATCGTAATATCTTGCATTTTGCACAA
ATTTCAATTCCATAAGGTACAATTAATACC	AGCTCTTTTTCGTTTGCATCAAGTGCTCTCTTTT
ATTTCAATTCCATAAGGTACAATTAATACA	CCAGCGATTCACTCGACAAATTTCTCAAACCTTT
ATTTCAATTCCATAAGGTACAATTAATACA	ATGAATAAGGATAAGAGAATACATTCTTTTACTA
ATTTCAATTCCATAAGGTACAATTAATACA	TTGCGCTTTCTGTGCGATATTGGCGAGGGTATAT
ATTTCAATTCCATAAGGTACAATTAATACA	GAGGCGTGCTTCTTCATTAAGCCTGTCTATATGA
ATTTCAATTCCATAAGGTACAATTAATACA	CAACAGGAACTTTGCCTGTACTGCTTGGAACGAA
ATTTCAATTCCATAAGGTACAATTAATACA	TCACACAGTATCACAAAGAACATAGTGATCAACCA
ATTTCAATTCCATAAGGTACAATTAATACA	CTAAAAATGTCATGGGTGGATGCTCGTTTAAATA
ATTTCAATTCCATAAGGTACAATTAATACT

>NC_006347|1|1|2924388-2924995|CRT
GTCCTAATTCCATAAGGTACAATTAATAC	CAGTGCAGCACATCGTAATATCTTGCATTTTGCACAA
ATTTCAATTCCATAAGGTACAATTAATAC	CAGCTCTTTTTCGTTTGCATCAAGTGCTCTCTTTT
ATTTCAATTCCATAAGGTACAATTAATAC	ACCAGCGATTCACTCGACAAATTTCTCAAACCTTT
ATTTCAATTCCATAAGGTACAATTAATAC	AATGAATAAGGATAAGAGAATACATTCTTTTACTA
ATTTCAATTCCATAAGGTACAATTAATAC	ATTGCGCTTTCTGTGCGATATTGGCGAGGGTATAT
ATTTCAATTCCATAAGGTACAATTAATAC	AGAGGCGTGCTTCTTCATTAAGCCTGTCTATATGA
ATTTCAATTCCATAAGGTACAATTAATAC	ACAACAGGAACTTTGCCTGTACTGCTTGGAACGAA
ATTTCAATTCCATAAGGTACAATTAATAC	ATCACACAGTATCACAAAGAACATAGTGATCAACCA
ATTTCAATTCCATAAGGTACAATTAATAC	ACTAAAAATGTCATGGGTGGATGCTCGTTTAAATA
ATTTCAATTCCATAAGGTACAATTAATAC

>NC_006347|1|1|2924454-2924995|PILER-CR
ATTTCAATTCCATAAGGTACAATTAATAC	CAGCTCTTTTTCGTTTGCATCAAGTGCTCTCTTTT
ATTTCAATTCCATAAGGTACAATTAATAC	ACCAGCGATTCACTCGACAAATTTCTCAAACCTTT
ATTTCAATTCCATAAGGTACAATTAATAC	AATGAATAAGGATAAGAGAATACATTCTTTTACTA
ATTTCAATTCCATAAGGTACAATTAATAC	ATTGCGCTTTCTGTGCGATATTGGCGAGGGTATAT
ATTTCAATTCCATAAGGTACAATTAATAC	AGAGGCGTGCTTCTTCATTAAGCCTGTCTATATGA
ATTTCAATTCCATAAGGTACAATTAATAC	ACAACAGGAACTTTGCCTGTACTGCTTGGAACGAA
ATTTCAATTCCATAAGGTACAATTAATAC	ATCACACAGTATCACAAAGAACATAGTGATCAACCA
ATTTCAATTCCATAAGGTACAATTAATAC	ACTAAAAATGTCATGGGTGGATGCTCGTTTAAATA
ATTTCAATTCCATAAGGTACAATTAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_006347.1\|WP_005788064.1\|2917069_2917639_-\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NC_006347.1\|WP_008768967.1\|2925473_2926487_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_006347.1\|WP_008768970.1\|2928131_2929457_-\|hypothetical-protein	cas8b6	mkCas0111_cas8b6_CAS-I-B	unknown
NC_006347.1\|WP_005788073.1\|2923347_2923752_-\|hypothetical-protein	unknown	unknown	unknown
NC_006347.1\|WP_005788057.1\|2914906_2915608_+\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NC_006347.1\|WP_011202916.1\|2933677_2934532_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519
NC_006347.1\|WP_011202911.1\|2917851_2920572_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_006347.1\|WP_005815531.1\|2923774_2924218_-\|hypothetical-protein	unknown	unknown	unknown
NC_006347.1\|WP_005788055.1\|2913759_2914884_+\|2-iminoacetate-synthase-ThiH	unknown	unknown	gnl\|CDD\|236425
NC_006347.1\|WP_005793488.1\|2934532_2935759_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|224241
NC_006347.1\|WP_008768972.1\|2931609_2932173_-\|hypothetical-protein	cas5	mkCas0069_cas5_CAS-I-B	unknown
NC_006347.1\|WP_005788070.1\|2920838_2922257_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_006347.1\|WP_008768969.1\|2927060_2928119_-\|hypothetical-protein	cas7	mkCas0088_cas7_CAS-I-B	gnl\|CDD\|187818
NC_006347.1\|WP_032588742.1\|2922267_2923185_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_006347.1\|WP_008768973.1\|2932184_2932856_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_006347.1\|WP_005788060.1\|2915669_2916278_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NC_006347.1\|WP_005788062.1\|2916355_2916868_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NC_006347.1\|WP_011202914.1\|2925207_2925471_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_006347.1\|WP_011202915.1\|2929460_2931620_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_006347.1\|WP_008768968.1\|2926483_2926996_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863

Protein	Function_ID	Function_description	E-value
NC_006347.1\|WP_005788064.1\|2917069_2917639_-\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	6.71541e-13
NC_006347.1\|WP_008768967.1\|2925473_2926487_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.93244e-178
NC_006347.1\|WP_008768973.1\|2932184_2932856_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.21508e-25
NC_006347.1\|WP_005793488.1\|2934532_2935759_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|224241	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only].	4.76227e-92
NC_006347.1\|WP_005788057.1\|2914906_2915608_+\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	1.34047e-112
NC_006347.1\|WP_011202916.1\|2933677_2934532_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	1.55921e-140
NC_006347.1\|WP_011202911.1\|2917851_2920572_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_006347.1\|WP_005788060.1\|2915669_2916278_+\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	6.53903e-31
NC_006347.1\|WP_005788062.1\|2916355_2916868_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	5.42949e-05
NC_006347.1\|WP_008768969.1\|2927060_2928119_-\|hypothetical-protein	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.29274e-06
NC_006347.1\|WP_032588742.1\|2922267_2923185_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	9.65557e-67
NC_006347.1\|WP_005788055.1\|2913759_2914884_+\|2-iminoacetate-synthase-ThiH	gnl\|CDD\|236425	PRK09240, thiH, 2-iminoacetate synthase ThiH.	0
NC_006347.1\|WP_005788070.1\|2920838_2922257_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	4.2194e-124
NC_006347.1\|WP_011202914.1\|2925207_2925471_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.18745e-27
NC_006347.1\|WP_011202915.1\|2929460_2931620_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.05058e-60
NC_006347.1\|WP_008768968.1\|2926483_2926996_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.10345e-56

>NC_006347.1|WP_005815531.1|2923774_2924218_-|hypothetical-protein
MTLMKTLNFMKTLFLLVAIVGLSSCGDKYYSDDYLRNSNAKLCGKTWVNDSEKNDVDEWVRHTLKFDDNGRLAETYAYYHVNESQPYRTETNNLTWSWIDDTMEGIVFDYGVNGVTYFDNVWVREHNLSGKLNGKVVVFVDSKYNRN
>NC_006347.1|WP_005788073.1|2923347_2923752_-|hypothetical-protein
MKGYWKILLILMLAVGFASCEDDQGEIEYVITGRAWTGDVGMNAHNGEPLFSTFEFGNDGFGVETQFYASDGLLYDQFRFQWYWEDSYNRNLVLNYGKNGISYMDDVRIYGDRITGAFYLSDDARGFNFELRME
>NC_006347.1|WP_032588742.1|2922267_2923185_+|RluA-family-pseudouridine-synthase
MKRIKRTPAEKARAQYTGYLVKEPMELMDFLAAKMPDASRTKLKSLLSKRIVLVDNVITTQFNFPLQPGMKVLISKDKNKKEFRHPLLKIVYEDAYIIVVEKKEGLLSVGTERQKERTAQHILSEYVGRSGRGNRIYVVHRLDRDTSGLMMFAKDEKTQYTLRDHWHDIVTDRRYVAVVTGEIEKDSDTVVSWLTDRTLYVSSSSYDDGGSKSITHYRTIKRANGYSLVELRLETGRKNQIRVHMQDLGHPLIGDGRYGIDGGPNPLGRLALHAFKLCFYHPVTDQLMEFETPYPPTFKKLFLKK
>NC_006347.1|WP_005788070.1|2920838_2922257_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MARKKKELPLLEKVTITDVAAEGKAIAKVDDLVVFVPYVVPGDVVDLQVKRKKNKYAEAEAVKFHELSPVRAVPFCQHYGVCGGCKWQVLPYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQEGMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCNDTINDLDVHVFRGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARDFAGLTGDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK
>NC_006347.1|WP_011202911.1|2917851_2920572_-|pyruvate,-phosphate-dikinase
MDKKRVYTFGNGLAEGKAGMRNLLGGKGANLAEMNLIGVPVPPGFTITTDVCTEYYEMGQEKVVSLLKEEVEKAIANIENLMRSKFGDVENPLLVSVRSGARASMPGMMDTILNLGLNDEVVEGLTRKTGNARFAWDSYRRFVQMYGDVVLGMKPVNKEDQDPFEAIIEEVKHAKGVKLDNELEVEDLKELVKKFKAAVKAQTGKDFPTCAYEQLWGAICAVFNSWMNERAILYRKMEGIPDEWGTAVSVQAMVFGNMGDTSATGVCFSRDAATGEDLFNGEYLINAQGEDVVAGIRTPQQITKIGSQRWAQLAGVSEEERASKYPSMEEAMPEIYKQLDELQTKLENHYKDMQDMEFTVQEGKLWFLQTRNGKRTGAAMVKIAMDLFRQGMIDEKTALMRVEPNKLDELLHPVFDKSALKQAKVLTRGLPASPGAATGQIVFFADDAAEWHAAGKRVVMVRIETSPEDLAGMAVAEGILTARGGMTSHAAVVARGMGKCCVSGAGALNIDYKARTVEVDGVLLKEGDFISLNGSTGEVYQGKVETKAAELSGDFADLMKLADKYTRLQVRTNADTPHDAEVARNFGAVGIGLCRTEHMFFEGEKIKAMREMILAENAEGRRKALAKILPYQQADFKGIFKAMAGCPVTVRLLDPPLHEFVPHDLKGQQEMADTMGVSLQYIQQRVESLCEHNPMLGHRGCRLGNTYPEITQMQTRAILGAALELKKEGIETHPEIMVPLTGILYEFQQQESVIRAEADNLFEEVGDRIDFKVGTMIEIPRAALTADRIASSAEFFSFGTNDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQNGVGQLVRMATEKGRAIRPDLKCGICGEHGGEPSSVKFCHKVGLNYVSCSPFRVPIARLAAAQAAIEE
>NC_006347.1|WP_005788064.1|2917069_2917639_-|PorT-family-protein
MKRNLVFVLFALVSVVGFSQVSWNAKVGMNISNFTGDFDMNAKVGFKIGGGMEYGFNEIWSLQPSLFVSSKGAKKDELSVNAVYLELPVMAAARFKVADNTNIVLSAGPYFACGIAGNSKVDLGKGRLEVDTFGDDGLLKRGDVGLGIGVAAEFGKIIAGLDGQFGFVDVMDNVNGKNLNLSISVGYKF
>NC_006347.1|WP_005788062.1|2916355_2916868_-|outer-membrane-beta-barrel-protein
MKKIVLFLFVAIATLSVKAQDLYMGGTVGLWRNDDANTTSFKLAPEIGYNLSEQWALGVELQFNHEYKEHISTNTFAIAPYARFSYYENKIVRLFVDGGFGFATTKVKDGGDAVNGFEIGLKPGIAIKLNQHFSLVAKCGFLGYKDDYMGNGFGFSASSEDLTFGFHYEF
>NC_006347.1|WP_005788060.1|2915669_2916278_+|thiamine-phosphate-synthase
MKLIVVTTPTFFVEEDKIITALFEEGLDILHLRKPETPAMYSERLLTLIPEKYHKRIVTHEHFYLKEEFNLMGIHLNARNPKEPHDYSGHISCSCHSVEEVKNKKHFYDYVFMSPVYDSISKEGYNSPYTAEELRLAAKDKIIDNKVMALGGITPDNILEVKDFGFGGAVVLGDLWGKFDACSDQDYLAVIEHFKKLKRMAD
>NC_006347.1|WP_005788057.1|2914906_2915608_+|HesA/MoeB/ThiF-family-protein
MERYSRQTMLPEIGEVGQLKLKAAKVLIVGVGGLGSPIALYLAGAGVGTIGLADDDEVSLSNLQRQILYTEEEVGDLKAICASMRISALNREIKVNACPGRLSKENARDLIGQYDIIVDGCDNFATRYLLSDVCSELGKPYVYGAICGFEGQVSVFNYGEGTQRKTYRDLYPDEEGMLHMPPPPKGVVGVTPAVTGSVEACEVLKIICGFGEVLAGKLWTIDLRTLQSNIFSL
>NC_006347.1|WP_005788055.1|2913759_2914884_+|2-iminoacetate-synthase-ThiH
MFSDELEKISWEETTKAIYSKTDADVRRALSKEHCDVNDFMALISPAAAPYLETMARLSRKYTMERFGKTISMFVPLYITNSCTNSCVYCGFNHNNPMKRTILTEEEMVNEYKAIKKLAPFENLLLVTGENPAKAGVDYIERALLLAKPYFANLQIEVMPLKAEEYERLTHAGLNGVICFQETYNKANYNIYHPRGMKSKFEWRVNGFDRMGQAGVHKIGMGVLIGLEEWRTDITMMAYHLRYLQKHYWKTKYSVNFPRMRPSENGGFQPNVVMNDRELAQVTFAMRIFDHDVDISYSTRESAAFRNHMATLGVTTMSAESKTEPGGYFTYPQALEQFHVSDERKAVEVDAALRSLGRIPVYKDWDTALTLPQC
>NC_006347.1|WP_011202914.1|2925207_2925471_-|CRISPR-associated-endonuclease-Cas2
MYVILVYDFGEKRVSKMLRLCRRYLNWIQNSVFEGELSEVRLKELLLLAKGFMNPEEDCIIIFKGATQCSLEKEIVGKELVNIDNFL
>NC_006347.1|WP_008768967.1|2925473_2926487_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTYYLFNPGELERKDNTLKFTPISEDGSENSVGGPRYLPVEDINEFYVFGSLRANSSLYNFLGQKDIAVHFFDYYQNYTGSFMPKDSLLSGKMILAQTSAYQNKKKRIVVAQKFIEAASWNMLKNLQYYNRRGKDMEDLMDAIKKYASQLSATTCVQELMGLEGMIRQTYYDAFNLILNDYEMGGRSKQPPKNEVNALISFGNMMCYTMCLRAIHQTQLNPTISFLHTPGERRYSLALDIAEVFKPVIIDRVIFKVLNKKEIQEKHFDWKLNKCLLNQTGKKIFVKAIEDKLIETIKHRILNRNVSYRHLIKLECYKLAKHLLEIEEYKPFKMYW
>NC_006347.1|WP_008768968.1|2926483_2926996_-|CRISPR-associated-protein-Cas4
MNLIGTHFNYYQVCKRKLWLFANGIHMEHTSDLVYDGKLIHENSYPQRSSKYEEIEIDGIKVDYYDALHKTIHEIKKSDKIDIAHEWQLKYYIYVFERNGIMDVTGVLEYPLLRKRDIVLLSEIDRETISEMEKDIIRITGSDICPALERKRICRNCSYFDFCYSGEDVE
>NC_006347.1|WP_008768969.1|2927060_2928119_-|hypothetical-protein
MKPYIYLRGLRHVDLSVFCVENGQKKYWDPIFNVWVPYSSGQQVKRSILNAINDELQVEPSPVTFVFDVNKNTLGEGEVLSLCDPQYFDQLLGGWMKAAKGGKERTLKRRSPFSISAMRPLHPLLGGRFTENATFDRSDRPKLHKIIVRDSSGKPMTEEQIEELLADTDRSLYRKWIPENSRATGLFVYDVAIDMRTLFTVSTNQLEPEISKEKIQELKEKGWGITQNVFGECLIMPEVERLKVIPAIAKALVNWRISSNQSRTFSLMETLAVAISDNANTLAGAIRAKLLDDNPDKPQAKPVIDEAAGAELFVALPCSGYVVTENESADALQKAEAKLIALLTAFDYETQK
>NC_006347.1|WP_008768970.1|2928131_2929457_-|hypothetical-protein
MYTSTIGKIFLKAYNRKYQKEHTGKSFFIEVFVPLFFDHQKYMMTARNSPLENPKLSWGDMIKGKKPFETPEQRRARIDKMIRKIESEEADASIAVGYGVSDNTAATTGQVTNINFSDNKENVYLSWIGDGLGIGVSGGLTISFNYEQILLDIFDGWKYYRDYLERYPWMKGNQINTWNAHWIVHRYDDYLYDVDNPTSGMNPVAPVEGEIVNLPTISWVPVVMGIARYFPIDNLVGYLYSIGKSNTTIGFMPFRLQDIISIEHLYSKMFGLSALSDNRRKIESLLGTALGLRIACQAGTIGIPAMEPKGLKAYFSTGKGLKKIVYKDDNEQKITINIYLIWILAMLNNEKLWTLSEEFARLLLQYEAGAGKMKRDRTNQVGQLFASVSVKQFLNNLIPIIENEKEVEGYRNMGKVFHEIPKDNFPYFNTLIRFQYALLNK
>NC_006347.1|WP_011202915.1|2929460_2931620_-|CRISPR-associated-helicase/endonuclease-Cas3
MGSRYDYILAKSESNGATSLKSHLESVAFWAQTAARYAGMDENVVRIGALLHDIGKASPFFQIRLQVKKKTNEKVFRHEVASLFFLKLIDRSLWPEVIDMIIAHHKSVYKDRSCNGLLDLKEYYGEENTFRDHVSGFSSWSIDAIGILRELNFPGVSADSLLSEEDALEAYRYAIEHCRRKPKGWSKWKGLLMGVDHLASATEEFKERIPTLFSIPDVGFYNRQHPLYPLSQVLSEANKKHTFVKAPTGAGKTDFLLKRCQGRIFYTLPFQASINAMYERIRRDLNGVVEDVRLLHSMSRLVIEGEKAWEEKVIQDKIGASIKVLTPHQLASVSLGTKGYETLLFDLCGCDIILDEIHTYSDIMQSIILTMIEVLVHIGCRIHVGTATMPSELEQKILDILGRDQTQQVELLSSVLDSFNRHIVHKVTDFYSVLPVLREAIENDQKILIVCNRVRNAQILFERIDELYPEVDKMLIHSRFKRKDRNRLEKELQDIYNKVLQACIVVSTQVVEVSLDISFDMMITETAPIDALIQRFGRINRKRKPKEERTLKHIYVIAPPDKKEDCLPYSQEILQRSYDALPQDSLLEESSLQRLIDQVYPQVNVIDLSLDAAFADGKWRLKELFHLPKSAFIEKLDIDSVSCITQEDADTGKYREATAEERVLMEIPMRYSSLRWKNLETFPYGSHPFVIPDIAYSSDRGLDITRMGTENYDTNYQIL
>NC_006347.1|WP_008768972.1|2931609_2932173_-|hypothetical-protein
MKYYVVKYGGPFGFIKPWTAVRDASGGETYSQQFLTPSIIEGIRQKLEVTAIMRHKLSYAGINIQQEVVQAKAWSKKGKTFMRARSVLKRGVMLSPVIYFAFATLEDARKASLQHICLCRNEDILLPEANIQELSISEFDKLEGYELRFGEREQSFLVGYNRFKNNEEMYGWIEMVGNPAKSHNYGE
>NC_006347.1|WP_008768973.1|2932184_2932856_-|CRISPR-associated-endoribonuclease-Cas6
MRIRIKTTSNEKILPFDYQGKLIGVIHKWLGNNELHDKISLYSFSWLLGGVMVDKKGYVFPNGAELLISFHEDQHLKKIIDSILLDPEIFYGLCVKDITIVGSPVFTEEPQRFFLASPIFIKRRIEEIMGYKYYFYDDQESNQLMTETLKHKMREAGLPEDDTLRVEFDISYSKKKKKMVTIHGIKSIANMCPVIIHGTQTSKRFAWVVGLGNGTGSGYGALI
>NC_006347.1|WP_011202916.1|2933677_2934532_+|type-I-methionyl-aminopeptidase
MKKFIKGVRFTPSNYPDEIEDKIQKYRKQGYKLPPRKVLRTPEQIEGIRESAKINTALLNHIAENIREGMSTEEIDRLVYDFTTSHGAIPAPLNYEGFPKSVCTSINDVVCHGIPSSTEILKSGDIINVDVSTIYNGYFSDASRMFMIGEVSPEKQRLVQVTKECMEIGIAAAQPWARLGDVGAAIQEHAEKNGYSVVRDLCGHGVGIKFHEEPDVEHFGRRGTGMLILPGMTFTIEPMINMGTYEVFVNSADDWTVCTDDGLPSAQWENMILITETGNEILTY
>NC_006347.1|WP_005793488.1|2934532_2935759_+|DNA-recombination-protein-RmuC
MELTLLLIIAALLVALLALTLTRNNRAQSEEMQRALRQQMQENREELNRSIRELRMEMTQTLNQGLQQLQDAMHKNMMTTGELQRQKFDAMARQQETLIQSTEKRLDDMRVMVEEKLQKTLNERIGQSFEIVRSQLENVQKGLGEMKSLAQDVGGLKKVLSNVKMRGTFGEVQLGALLEQMMSPEQYEANVKTKKSGTEFVEFAIKLPGKDDANSTVYLPIDAKFPKDVYEQYYDAFEAGDAALMESCGRQLETTIKKMAKDIHDKYVDPPFTTDFAILFLPFESIYAEVIRRTSLVETLQKDYKIVVTGPTTLGAILNSLQMGFRTLAIQKRTGEVWTVLGAVKTEFGKFGGLLEKVQKNLQSAGDQLEEVMGKRTRAIERKLRQVEELPHEESRRILPIDDGGEDD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006347_1	1.3\|2924548\|34\|NC_006347\|CRISPRCasFinder	2924548-2924581	34	NZ_CP020508	Serratia marcescens strain BWH-35 plasmid unnamed, complete sequence	25336-25369	10	0.706
NC_006347_1	1.3\|2924548\|34\|NC_006347\|CRISPRCasFinder	2924548-2924581	34	NZ_CP020506	Serratia marcescens strain 95 plasmid unnamed1, complete sequence	163852-163885	10	0.706
NC_006347_1	1.3\|2924548\|34\|NC_006347\|CRISPRCasFinder	2924548-2924581	34	MN661402	Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence	137006-137039	10	0.706
NC_006347_1	1.5\|2924676\|34\|NC_006347\|CRISPRCasFinder	2924676-2924709	34	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	287696-287729	10	0.706

1. spacer 1.3|2924548|34|NC_006347|CRISPRCasFinder matches to NZ_CP020508 (Serratia marcescens strain BWH-35 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccagcgattcactcgacaaatttctcaaaccttt	CRISPR spacer
ccagccattcactcgacaactttcaaggaaccaa	Protospacer
***** ************* ****  ..* *.

2. spacer 1.3|2924548|34|NC_006347|CRISPRCasFinder matches to NZ_CP020506 (Serratia marcescens strain 95 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ccagcgattcactcgacaaatttctcaaaccttt	CRISPR spacer
ccagccattcactcgacaactttcaaggaaccaa	Protospacer
***** ************* ****  ..* *.

3. spacer 1.3|2924548|34|NC_006347|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 10, identity: 0.706

ccagcgattcactcgacaaatttctcaaaccttt	CRISPR spacer
ccagccattcactcgacaactttcaaggaaccaa	Protospacer
***** ************* ****  ..* *.

4. spacer 1.5|2924676|34|NC_006347|CRISPRCasFinder matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 10, identity: 0.706

ttgcgctttctgtgcgatattggcgagggtatat	CRISPR spacer
gtattctttctgtgcgatattgccgagggcggcg	Protospacer
 *.. ***************** ******..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2705681 : 2717164

unidentified_phage(66.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011202836.1\|2705681_2707034_+	hypothetical protein	H7BUQ7	unidentified_phage	2.5e-182	66.9
WP_005793835.1\|2707043_2707985_+	hypothetical protein	H7BUQ9	unidentified_phage	1.9e-91	56.0
WP_005793833.1\|2707987_2708788_+	hypothetical protein	H7BUR0	unidentified_phage	1.7e-61	45.0
WP_004312011.1\|2709178_2710852_-\|transposase	IS66-like element ISBf10 family transposase	A0A218MNE7	uncultured_virus	2.1e-37	28.9
WP_004312010.1\|2710927_2711293_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004319780.1\|2711296_2711653_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_164927414.1\|2711725_2712127_+	peptidase M15	H2A0C2	Bacteroides_phage	7.9e-39	63.1
WP_005793829.1\|2712139_2712583_+	hypothetical protein	NA	NA	NA	NA
WP_005793827.1\|2712579_2713044_+	hypothetical protein	NA	NA	NA	NA
WP_005793825.1\|2713105_2717164_+	hypothetical protein	H7BUR2	unidentified_phage	1.3e-93	29.1

DBSCAN-SWA_2

2773902 : 2839296

Cellulophaga_phage(14.29%)

head,protease,tRNA,capsid,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010993029.1\|2773902_2774580_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_011202856.1\|2774656_2776654_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	2.7e-116	37.1
WP_011202857.1\|2776757_2777651_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_005787873.1\|2777802_2778429_-	chloramphenicol acetyltransferase	NA	NA	NA	NA
WP_011202858.1\|2778524_2778899_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_005793740.1\|2779197_2780091_+	formylglycine-generating enzyme family protein	A0A7F1	Microcystis_virus	2.6e-34	41.1
WP_008768894.1\|2780527_2782828_-	patatin-like phospholipase family protein	A0A1V0SCG0	Catovirus	1.6e-11	26.8
WP_011202859.1\|2782997_2785043_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-46	27.8
WP_011202860.1\|2785173_2787708_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	6.3e-126	40.6
WP_005787886.1\|2788099_2790637_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.8e-113	32.2
WP_005787888.1\|2790669_2791881_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005787896.1\|2792230_2793352_-	universal stress protein	NA	NA	NA	NA
WP_005787898.1\|2793430_2793715_-	hypothetical protein	NA	NA	NA	NA
WP_005787899.1\|2793925_2794762_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005787906.1\|2794780_2796604_-	protein BatD	NA	NA	NA	NA
WP_193345508.1\|2796639_2797350_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005787920.1\|2797358_2798384_-	VWA domain-containing protein	NA	NA	NA	NA
WP_005787921.1\|2798397_2799381_-	VWA domain-containing protein	NA	NA	NA	NA
WP_011202862.1\|2799432_2800506_-	hypothetical protein	NA	NA	NA	NA
WP_005793731.1\|2800514_2801384_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_005787927.1\|2801440_2802436_-	AAA family ATPase	NA	NA	NA	NA
WP_011202863.1\|2802679_2804131_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_005787931.1\|2804123_2804414_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_005787933.1\|2804488_2805787_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_005787934.1\|2805783_2806743_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	2.0e-19	41.1
WP_005777897.1\|2806892_2807051_-	DUF4295 domain-containing protein	NA	NA	NA	NA
WP_002560155.1\|2807070_2807259_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_005787937.1\|2807285_2807546_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_011202865.1\|2807667_2808900_-	CinA family nicotinamide mononucleotide deamidase-related protein	B5TK85	Pseudomonas_phage	5.6e-19	41.7
WP_005787941.1\|2808907_2809927_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.6e-66	42.2
WP_164927374.1\|2809959_2814564_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA
WP_005787945.1\|2814659_2815040_-	YccF domain-containing protein	NA	NA	NA	NA
WP_005793720.1\|2815132_2816626_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	5.4e-93	36.9
WP_005793718.1\|2816920_2817655_-	TIGR02757 family protein	NA	NA	NA	NA
WP_005793715.1\|2817786_2821020_-	S41 family peptidase	NA	NA	NA	NA
WP_005793713.1\|2821517_2821934_-	hypothetical protein	NA	NA	NA	NA
WP_005793712.1\|2821939_2823169_-	hypothetical protein	NA	NA	NA	NA
WP_005793710.1\|2823775_2824903_-	hypothetical protein	O64086	Bacillus_phage	9.0e-32	30.8
WP_005793707.1\|2824938_2825256_-	hypothetical protein	NA	NA	NA	NA
WP_005793705.1\|2825380_2825830_-	hypothetical protein	NA	NA	NA	NA
WP_005793703.1\|2825826_2826222_-	peptidase M15	H2A0C2	Bacteroides_phage	2.9e-38	61.8
WP_005793701.1\|2826218_2826677_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_005793697.1\|2826884_2830859_-	hypothetical protein	R9ZXB1	Cellulophaga_phage	1.0e-05	34.8
WP_005793696.1\|2830845_2832927_-	hypothetical protein	NA	NA	NA	NA
WP_005793695.1\|2832923_2835137_-	hypothetical protein	R9ZYD7	Cellulophaga_phage	4.7e-08	45.4
WP_011202871.1\|2835129_2835384_-	hypothetical protein	NA	NA	NA	NA
WP_005793692.1\|2835422_2835764_-	hypothetical protein	NA	NA	NA	NA
WP_005793690.1\|2835822_2836305_-\|tail	phage tail protein	NA	NA	NA	NA
WP_164927375.1\|2836301_2836700_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011202873.1\|2836714_2837353_-	hypothetical protein	NA	NA	NA	NA
WP_011202874.1\|2837356_2837695_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011202875.1\|2837691_2838030_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011202876.1\|2838099_2839296_-\|capsid	phage major capsid protein	NA	NA	NA	NA

DBSCAN-SWA_3

3380416 : 3439222

unidentified_phage(22.22%)

protease,integrase,transposase

attL 3420756:3420770|attR 3440734:3440748

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005788738.1\|3380416_3382123_-\|protease	serine protease	NA	NA	NA	NA
WP_005788741.1\|3382143_3382884_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_011203085.1\|3382944_3384630_-	DNA repair protein RecN	NA	NA	NA	NA
WP_005788745.1\|3384633_3385827_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.4e-37	31.5
WP_005788747.1\|3385829_3386603_-	3'-5' exonuclease	A0A1B0WLV5	Flavobacterium_phage	5.4e-44	41.1
WP_005788748.1\|3386733_3387858_-	DNA polymerase III subunit beta	NA	NA	NA	NA
WP_005788752.1\|3388010_3388385_+	DUF3127 domain-containing protein	NA	NA	NA	NA
WP_011203086.1\|3388462_3390100_-	DUF3352 domain-containing protein	NA	NA	NA	NA
WP_011203087.1\|3390192_3390951_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005788761.1\|3391011_3392010_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_008769737.1\|3392029_3392884_-	DUF4348 domain-containing protein	NA	NA	NA	NA
WP_005788767.1\|3392979_3393933_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_011203088.1\|3394069_3395257_+	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	2.5e-32	26.3
WP_005788775.1\|3395305_3395710_+	DUF2721 domain-containing protein	NA	NA	NA	NA
WP_011203089.1\|3395849_3396761_-	DUF4906 domain-containing protein	NA	NA	NA	NA
WP_011203090.1\|3396878_3397925_-	BF2992 family fimbrillin-A clan protein	NA	NA	NA	NA
WP_011203091.1\|3397938_3400062_-	fimbrillin family protein	NA	NA	NA	NA
WP_011203092.1\|3400096_3401122_-	hypothetical protein	NA	NA	NA	NA
WP_011203093.1\|3401257_3402811_-	Mfa1 family fimbria major subunit	NA	NA	NA	NA
WP_011203094.1\|3402797_3403850_-	FimB/Mfa2 family fimbrial subunit	NA	NA	NA	NA
WP_011203095.1\|3404029_3405691_-	Mfa1 family fimbria major subunit	NA	NA	NA	NA
WP_011203096.1\|3405716_3407120_-	hypothetical protein	NA	NA	NA	NA
WP_011203097.1\|3407128_3407686_-	DUF3575 domain-containing protein	NA	NA	NA	NA
WP_005815229.1\|3407722_3408097_-	hypothetical protein	NA	NA	NA	NA
WP_193345514.1\|3408487_3408841_-\|integrase	integrase	NA	NA	NA	NA
WP_011203099.1\|3408957_3410187_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.2e-23	31.8
WP_004311260.1\|3410206_3411418_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	8.8e-17	27.4
WP_004311261.1\|3411482_3411776_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_083810220.1\|3411788_3411992_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011203101.1\|3412653_3416463_+	class I SAM-dependent DNA methyltransferase	A0A1B1IUC6	uncultured_Mediterranean_phage	2.7e-11	26.3
WP_005680425.1\|3417403_3418012_-	master DNA invertase Mpi family serine-type recombinase	H2A0H0	Bacteroides_phage	3.6e-67	70.1
WP_004297199.1\|3419475_3420501_+\|transposase	IS110 family transposase	NA	NA	NA	NA
3420756:3420770	attL	NA	NA	NA	NA
WP_015547183.1\|3421364_3421598_-	hypothetical protein	NA	NA	NA	NA
WP_011203107.1\|3421594_3422524_-	amidoligase family protein	A0A1B1IN52	uncultured_Mediterranean_phage	2.8e-31	36.5
WP_004329591.1\|3422670_3423459_-	ParA family protein	NA	NA	NA	NA
WP_004329592.1\|3423486_3423873_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_004329593.1\|3423902_3424319_-	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_011203108.1\|3424517_3424727_-	hypothetical protein	NA	NA	NA	NA
WP_004289236.1\|3425674_3426241_-	hypothetical protein	NA	NA	NA	NA
WP_004289235.1\|3426237_3426996_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	4.5e-11	27.1
WP_011203111.1\|3426992_3427973_-	iron ABC transporter permease	NA	NA	NA	NA
WP_011203112.1\|3427973_3429113_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004311295.1\|3429124_3431203_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_004293828.1\|3431221_3432322_-	YncE family protein	NA	NA	NA	NA
WP_004311297.1\|3432350_3434441_-	lipoprotein	NA	NA	NA	NA
WP_004293827.1\|3434455_3436237_-	cell surface protein	NA	NA	NA	NA
WP_007567599.1\|3436301_3437219_-	DUF4465 domain-containing protein	NA	NA	NA	NA
WP_004289226.1\|3437952_3438282_-	hypothetical protein	NA	NA	NA	NA
WP_011203113.1\|3438328_3439222_-\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
3440734:3440748	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4801040 : 4875567

Pseudomonas_phage(28.57%)

transposase,integrase,tRNA

attL 4865071:4865086|attR 4884205:4884220

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005791502.1\|4801040_4802558_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_005791499.1\|4802652_4804710_+	HDIG domain-containing protein	NA	NA	NA	NA
WP_011203605.1\|4804684_4805158_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_005797616.1\|4805272_4807072_-	DUF4091 domain-containing protein	NA	NA	NA	NA
WP_011203607.1\|4807113_4809573_-	primosomal protein N'	NA	NA	NA	NA
WP_011203608.1\|4809647_4810226_-	porin family protein	NA	NA	NA	NA
WP_011203609.1\|4810906_4812067_-	6-bladed beta-propeller	NA	NA	NA	NA
WP_005791488.1\|4812213_4813647_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_005791486.1\|4813965_4815276_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_005791484.1\|4815321_4816380_+	L-asparaginase 2	NA	NA	NA	NA
WP_005814336.1\|4816412_4817600_+	OprO/OprP family phosphate-selective porin	NA	NA	NA	NA
WP_005822162.1\|4818115_4819114_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_005811423.1\|4820228_4820486_+	restriction endonuclease subunit M	NA	NA	NA	NA
WP_011203610.1\|4820552_4821368_+	N-6 DNA methylase	NA	NA	NA	NA
WP_005811425.1\|4821371_4821782_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_005811426.1\|4821768_4822119_+	DUF1016 family protein	NA	NA	NA	NA
WP_005811427.1\|4822136_4822277_+	hypothetical protein	NA	NA	NA	NA
WP_011203611.1\|4822288_4822774_+	DUF1016 family protein	Q9JMP5	Wolbachia_phage	1.7e-11	36.9
WP_011203614.1\|4823405_4823828_+	tyrosine recombinase	NA	NA	NA	NA
WP_005822166.1\|4823860_4824514_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0WMK0	Flavobacterium_phage	8.4e-14	35.4
WP_005811434.1\|4824739_4824919_+	membrane protein	NA	NA	NA	NA
WP_011203615.1\|4825347_4825590_+	hypothetical protein	NA	NA	NA	NA
WP_005822168.1\|4825772_4826183_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_011203616.1\|4826152_4826875_+	AAA family ATPase	NA	NA	NA	NA
WP_004319780.1\|4831158_4831515_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004312010.1\|4831518_4831884_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004312011.1\|4831959_4833633_+\|transposase	IS66-like element ISBf10 family transposase	A0A218MNE7	uncultured_virus	2.1e-37	28.9
WP_011203617.1\|4834013_4834613_-	ATP-binding protein	NA	NA	NA	NA
WP_011203618.1\|4834581_4836141_-\|transposase	IS21-like element ISBf2 family transposase	NA	NA	NA	NA
WP_005822175.1\|4836371_4838006_+	exo-alpha-sialidase	NA	NA	NA	NA
WP_011203619.1\|4838188_4839820_+\|transposase	IS1182-like element ISBf5 family transposase	Q9MBP7	Staphylococcus_prophage	2.7e-69	33.5
WP_005822181.1\|4840628_4841867_+	MFS transporter	NA	NA	NA	NA
WP_005811457.1\|4841963_4843103_+	cyclically-permuted mutarotase family protein	NA	NA	NA	NA
WP_005822182.1\|4843370_4846616_+	TonB-dependent receptor	NA	NA	NA	NA
WP_010993680.1\|4846630_4848247_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_005798047.1\|4848334_4849168_+	glycoside hydrolase family 16 protein	NA	NA	NA	NA
WP_005822184.1\|4849424_4851785_+	family 20 glycosylhydrolase	A0A2H4UUW7	Bodo_saltans_virus	4.4e-12	30.7
WP_005822185.1\|4851815_4852676_+	glycoside hydrolase family 16 protein	NA	NA	NA	NA
WP_005811467.1\|4853820_4855695_+	beta-galactosidase	NA	NA	NA	NA
WP_011203621.1\|4855923_4858920_+	TonB-dependent receptor	NA	NA	NA	NA
WP_011203622.1\|4858939_4860544_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_005822191.1\|4861327_4862695_+	hypothetical protein	NA	NA	NA	NA
WP_005811475.1\|4862691_4863747_+	hypothetical protein	NA	NA	NA	NA
WP_004308130.1\|4864596_4864947_+	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	1.4e-23	51.2
WP_008775183.1\|4864924_4865122_+	reverse transcriptase	A0A0U4J920	Pseudomonas_phage	1.0e-15	61.5
4865071:4865086	attL	NA	NA	NA	NA
WP_011203625.1\|4865242_4865533_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005811477.1\|4865768_4865906_-	hypothetical protein	NA	NA	NA	NA
WP_005811479.1\|4865961_4866336_+	hypothetical protein	NA	NA	NA	NA
WP_005811481.1\|4866420_4866792_+	DUF4373 domain-containing protein	NA	NA	NA	NA
WP_005811483.1\|4866811_4867030_+	hypothetical protein	NA	NA	NA	NA
WP_005811493.1\|4867302_4868577_-	ATP-binding protein	NA	NA	NA	NA
WP_011203628.1\|4868708_4870250_-	plasmid recombination protein	NA	NA	NA	NA
WP_005822199.1\|4870400_4871429_-	hypothetical protein	NA	NA	NA	NA
WP_011203629.1\|4871421_4872921_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_005811501.1\|4872913_4873246_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005811504.1\|4873478_4874147_-	hypothetical protein	NA	NA	NA	NA
WP_005822203.1\|4874208_4875567_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4884205:4884220	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_006347.1|WP_004291533.1|116124_116541_+|PcfK-like-family-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_006347.1|WP_004291533.1|116124_116541_+|PcfK-like-family-protein

116124_116541_+

138 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5571428571428572	0.9855072463768116	0.9929078014184397

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_006347

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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