CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007907	Desulfitobacterium hafniense Y51, complete genome	8 crisprs	cas3,cas14k,RT,WYL,csa3,cas14j,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,PrimPol	0	8	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007907_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_1

1310866-1310963

Orphan

Consensus_repeat	Method
GTCACTCCTCGTATGAGGAGTGTGGATTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007907_1

>merge|NC_007907|1|1310866-1310963|CRISPRCasFinder
GTCACTCCTCGTATGAGGAGTGTGGATTGAAATGCAGGGGAGAAATATTCGCACTCAAACCCAATGAGTCACTCCTCGTATGAGGAGTGTGGATTGAA

>NC_007907|1|1|1310866-1310963|CRISPRCasFinder
GTCACTCCTCGTATGAGGAGTGTGGATTGAA	ATGCAGGGGAGAAATATTCGCACTCAAACCCAATGA
GTCACTCCTCGTATGAGGAGTGTGGATTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_005814288.1\|1308019_1308973_+\|DUF1848-domain-containing-protein	unknown	unknown	gnl\|CDD\|378091
NC_007907.1\|WP_011459511.1\|1301459_1303322_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_007907.1\|WP_005814295.1\|1313301_1314672_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143454
NC_007907.1\|WP_011459514.1\|1306194_1307169_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NC_007907.1\|WP_005814289.1\|1309188_1310670_+\|CZB-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NC_007907.1\|WP_005814307.1\|1320770_1322261_+\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_005814291.1\|1310996_1311236_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_005814294.1\|1312082_1313300_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341468
NC_007907.1\|WP_005814304.1\|1318673_1319387_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_007907.1\|WP_005814267.1\|1299737_1301456_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_007907.1\|WP_005814293.1\|1311459_1312035_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_007907.1\|WP_005814298.1\|1316052_1316400_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_007907.1\|WP_005814285.1\|1307339_1308023_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132880
NC_007907.1\|WP_005814305.1\|1319383_1320778_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_007907.1\|WP_005814277.1\|1305521_1306103_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236700
NC_007907.1\|WP_005814274.1\|1305208_1305535_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_007907.1\|WP_005814273.1\|1304091_1305063_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_007907.1\|WP_005814297.1\|1315034_1316060_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011459512.1\|1303288_1304095_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NC_007907.1\|WP_005814302.1\|1316669_1318613_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_005814288.1\|1308019_1308973_+\|DUF1848-domain-containing-protein	gnl\|CDD\|378091	pfam08902, DUF1848, Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.	6.98545e-166
NC_007907.1\|WP_011459511.1\|1301459_1303322_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_007907.1\|WP_005814295.1\|1313301_1314672_+\|aldehyde-dehydrogenase	gnl\|CDD\|143454	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.	0
NC_007907.1\|WP_011459514.1\|1306194_1307169_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.65275e-55
NC_007907.1\|WP_005814289.1\|1309188_1310670_+\|CZB-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.18232e-33
NC_007907.1\|WP_005814293.1\|1311459_1312035_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.41241e-14
NC_007907.1\|WP_005814294.1\|1312082_1313300_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341468	cd08189, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. It is distinct from other alcohol dehydrogenases which contain different protein domain. Proteins of this family have not been characterized.	0
NC_007907.1\|WP_005814267.1\|1299737_1301456_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.61477e-150
NC_007907.1\|WP_005814304.1\|1318673_1319387_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.6124e-92
NC_007907.1\|WP_005814298.1\|1316052_1316400_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	5.08256e-18
NC_007907.1\|WP_005814285.1\|1307339_1308023_+\|DNA-alkylation-repair-protein	gnl\|CDD\|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	1.03219e-44
NC_007907.1\|WP_005814305.1\|1319383_1320778_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.7765e-58
NC_007907.1\|WP_005814277.1\|1305521_1306103_+\|hypothetical-protein	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0.00523653
NC_007907.1\|WP_005814274.1\|1305208_1305535_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.15426e-19
NC_007907.1\|WP_005814273.1\|1304091_1305063_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.11407e-74
NC_007907.1\|WP_011459512.1\|1303288_1304095_-\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.000638408
NC_007907.1\|WP_005814302.1\|1316669_1318613_+\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	9.62883e-82

>NC_007907.1|WP_005814289.1|1309188_1310670_+|CZB-domain-containing-protein
MNFFKKAPCEEALCVIKSVEDRLNGLEVELPDVQYPIHQNLVKIFEKLLASEEHMSKSSKKMIGLTSALSNFDVEMTHSSHKLIEFAREMSTISESNLAIVEEISASMSEVNDTIGNTSEVMNSLQESSRALVLKNDESIARIEEIDVLKNDVSKDAALMSEQIKVLVEMAVKVNEIVDGVENIANQTNLLALNAAIEAARAGEAGKGFAVVADEVRKLADSTKTSLGNMRSFVNNIQQAAVSGQSSMENTMNSTAKMHTKLDMISQTIIENVSMLKNTISDVDLITESLGHIKESASQINQAMEASTQDAEKLNLMTQRIQDDATQSADNAKEIARIDDELSGLVREMITALNGGKNAVSNQELLENISKAKAAHANWIKNLSRIVEEMTTYPLQTNSKKCAFGHFYHSMDVSGTVLEDAWRAIDQVHDEFHTSGSKVIEAVKENKPELARNLFLHTKELSQNIFAKLDEVTHIIEGSAAQGVEILRTSKAS
>NC_007907.1|WP_005814288.1|1308019_1308973_+|DUF1848-domain-containing-protein
MIISASRRTDIPAFYSQWLLNRLQEGYVLVPNPRNPSRYSRVELNPQVVDCLVFWTKNPSPMLPRLAEIVALGYPFYFQFTLTPYDRDLEQNLPPKETLLNIFQKLSAMLGPERVVWRYDPVILTPELGLDLEYHLRQFERMAAALAGYTQRCIFSFLDMYPKVGRAMSLALAQEAKEADETAMGRIAEGFSAIARKHDLDLFTCCEPVKLSQYGIKHASCIDQGMIEEILKCKIQVKKDPNQRPSCGCIESVEIGTYDSCPHGCLYCYGTSSPKTVRSNIARHDPKSPVLIGALPQNAIITERKMCSRKDAQLTLF
>NC_007907.1|WP_005814285.1|1307339_1308023_+|DNA-alkylation-repair-protein
MQTEIKKQMQELAEEEYRVFSSGLLPNIGNILGVRLPLLRKMAKQITKADWREYLKTAREDSFEEIMLQGMVIGCAQCSAPERLAYIQGFVPKIDNWSVCDSFCNGLNFTKENKELVWEFLQPYLRSEREFEIRFGVVMLLTYYSDQEYIKAVLEGLDGIRHEGYYVKMAVAWAISICYIKLPEETLPYLQHNHLDDFTYNKALQKITESYRVDQETKKQIRLMKRR
>NC_007907.1|WP_011459514.1|1306194_1307169_+|D-alanyl-D-alanine-carboxypeptidase
MAQRPRRKKRKSKPPMLLLLLLLVVIAVLGYKYLPESQQLAEKISGDRTGTVSQLKPETRPTSLSVGRLNSSQAILVRLKDQKILMGKGSEEKIYPASLTKIMTAILAIENLPNLQEKIRLSQATFQGLYQANASMTGFQPEEQVSVMDLLYGVMLPSGAESCVGLAERIAGSERKFALLMNQKAAELGMNHTHFENATGLHAENHYTTVKDLAVLLSYALQNDLFREVFTASRHSTPPTNKHPGGITFYSTMFSVLGSSKIAGGEILGGKTGYTDEAGLCLASLAQVGKEQYILITAGAKGNHDSEQYNVSDALAVYNSLGKE
>NC_007907.1|WP_005814277.1|1305521_1306103_+|hypothetical-protein
MSFSKEIREKIRRFAEEQSQHYLEEAEMTYLEKLRRKTGETKSKVTAKLAKLKNRSGTALEAQNDMILYMSDYMNDLIAEGYSEQDAFKQAKEELRFRSETAKSSDLQERFAEYYANMNPADYEAVGLFYAGFLFFGIAIGALTGFISSGGREMFMAGGWIDTLIGAAVGITIGIGLGLISHAIIALKKKLPS
>NC_007907.1|WP_005814274.1|1305208_1305535_+|PadR-family-transcriptional-regulator
MLKGVLDGIVLEIISRGDIYGYEIAKQLHAMGFKDLAEATVYALLLRLEKNKLVHITRRPSEMGPPRKFYTLNERGVEELAAYWARWDFLSERIHILRNNGGKSNELQ
>NC_007907.1|WP_005814273.1|1304091_1305063_-|ABC-transporter-ATP-binding-protein
MTHHELTVKSIVYGRKRFLKRWPALLEVSELTKSYHEVRGVKNLSFQVESGTALGLLGPNGAGKTTTIRLLMGFMKPDLGSASIWGLDCWRDRAELKEITGYLPGELHFMEQFTGQEFLDLIEGMHGAPQTIRKKQRDLLRALELDPKQRIRKMSKGMKQKLGIIAALMLDAPVLILDEPSSGLDPLMQKTFIELILEEKKREKTIFMSSHHFAEIERTCERVGMIRDGELLAIQDITLLKQKERQTFDIEVSGEEDAELLRQSGLTLYPLDQLKFTIQVTGEQELLWKTLAQIRVRRFQQGSLELEEAFMHYYHSSLRGDNT
>NC_007907.1|WP_011459512.1|1303288_1304095_-|ABC-transporter-permease-subunit
MNRALFRAMMKQNRKKVAKLAAGIVLYETLLTWVYPVIAENSAVTQLTDSIPSAVKTVFGVAEEARVDTFEAFISAQFLARIWAMLMSLYNVETANELLAKLADDGSLALLLSTPVPRGDYLFTQALVLFSGNALLVLATLLGLCCGAYRFGITIDSWRYCRFGLLSLAFYSLIGAYSLFFSALTAQEDLALTLAAGATLTFYALDVAGGLSEQHSWMRRLSLFQCYQPQEVLEGTSDPARKIIGLTAGSVILLQLGIYAFNEKDLAI
>NC_007907.1|WP_011459511.1|1301459_1303322_+|ABC-transporter-ATP-binding-protein
MAGGFRTQQPKAPALVNRPGAGNRFVPAAKPKNTKGTLGRIVKIYLRWAKSIFAVILLTAASSLVAVAIPYYVGQAFNTFHIADRSVDTARLVSLLLIILSLYLGNLLLNLLNGTMMLRLSQKLVYTLRQEFFAKMQRLPLGFYDTRSHGDTMSRITNDMDNISSTIAQTTTQLIASILTLAGSLAVMLSLNVPLTLVVLLCVPLVFVLTKTIATRSRAYFLAQQRSLGALNGVIEENILGLKMVKAFNRQEEVLRKFQEINQGLRASSYKAQVWSGCMMPLMNVINNLVFAAVAICGGILTLSQGLAVGTVVSFLTYSKQFAHPLNSVAGMFNTIQSALAGAERVFEILDYEEERADEENALEMEHPAGAVAFDEVSFSYDKTQPILKEVSFQVNPGEVVALVGETGAGKTTIVNLLTRFYDADSGEIRIDGVPVTRIKRASLRRCFSVVLQDTSLFSGTLMDNIRYGREDATEEEVIRAAQIAHAHGFIAKLPQGYGTRVSAANDTLSQGQKQLISIARALLCDSPILILDEATSSVDTKTEKDIQKALVSLMQNRTSFLIAHRLSTIRDADRIMVIGEGQILESGNHQSLMTKQGRYYEMVMSQLGSQMAKSFSLKA
>NC_007907.1|WP_005814267.1|1299737_1301456_+|ABC-transporter-ATP-binding-protein
MTLYYNYLAKYKIPFLIAVLCVTLEAVCDLLGPTLMARIINQGIEKGSLAEVYYWGTLMLAVTLLGACFAVTRSNLASYVSQRMGGDLRADLFGKIISFAEQSGDKIDGGSLITRMINDTSQIIQFINGMMRIFLKAPLTGIGSVILASWLNFRLSLIIYGVVAVVSLLIYASMKFSYPRFYQLQKAVDRVNLKVQEYLIGIRLVKAFGTYEQETEKFAEANRELMQKGISSQMVITLISPFLTLVVGTGTAAVIFLGSRLFMMDLADLGDMMAFTIYMAQILTSLIMITTVFTTFVRTKASMERIGEVLDCAEDFAPSGAERKLQGKITFDKVTFAYPNGSGVPAIRELSFTVNPGGSLAIIGPTGSGKSTIAWLLLRFYDADRGRIMLDDYPIQELGADEIRHNIAIVPQKSMLFSGTVAENLRWGDKQASPEELRQAAEKAQADFIGQMTEGYDSLLGSEGVNLSGGQKQRLSLARALLKKAPVLILDDATSALDAVTEAKVRENLKHNDYRQTLLIITQRCGTAMSADQILVMENGREAGLGSHEELMRACAIYQDIYHTQLQSSREA
>NC_007907.1|WP_005814291.1|1310996_1311236_-|hypothetical-protein
MDKLDIILERLNILNRIESDIKASKADNRETYKKLDKLGEISAKQEMTWQAVKELRDDKTEINELRRRIEILESKIALY
>NC_007907.1|WP_005814293.1|1311459_1312035_+|TetR/AcrR-family-transcriptional-regulator
MDKKEATEQPIDMRRHILTVASGLMIEKGVKETSLKDIAQEAGISKGTLYYYYSAKEDIIYDIANHNLKQITDGLLAWIDDVTTEAAPEEVLKIVFEQILGAETRGKLHLYLLSDAGTTNTPLKEKFKEQYQEWRNTLQYGLDKILPSQNQKNEVLSYLILAALDGLIIQRLFGTEEIPVEEIVKLLASTE
>NC_007907.1|WP_005814294.1|1312082_1313300_+|iron-containing-alcohol-dehydrogenase
MNALYCRLYQRTLQLASYFLPWRKPTLLEGTNSLNKLPEAISRKGISKVLIVTDQGIYSLGLMDSFLQGLDKAGVRYSIYDKTVPNPTLDNIEEALKIYREDQCEGIVAFGGGSPMDCAKGVGARVANPHKSISQMKGVLKVRRKLPPLFAIPTTAGTGSEATLAAVISDPRNREKYPVNDTALIPHYAVLDPLLTVGLPKHITSTTGLDALTHAVEAYIGRSNTQETKELSRKAVRLIFDNLYIAYSQGENVKARENMLKASYYAGVAFTRAYVGYIHALAHALGGFYGVPHGLANAVILPYVLEYYGEAVHERLAELADVLEMGSPGDSHEKKATLFIEAIKELSKKMNIPRKIDGILAEDIPLLVEHAWKEATPLYPVPKLLSRNDLNNILNLIGSAQKEEV
>NC_007907.1|WP_005814295.1|1313301_1314672_+|aldehyde-dehydrogenase
MPDIKEILVKQRAFFQTGKTKELQFRVDMLNKLRSAIKIHEEEIMAALKADLNKAPFEAYATEVGMVLEELNYTLKHISSWVKPKRVRTPLVHFPSASYLYTEPYGSVLIMSPWNYPFQLTLAPLVGAISAGNCAVLKPSEYSANTSAMIERIVKEIFDESFVAVVRGGREANKTLLNEKFDYIFFTGSIQVGKTVMESAARHLTPVTLELGGKSPCIVDDTADLELAAKRIVWGKFLNAGQTCVAPDYLLVHRTVKEKIIQEIKKSITAFYGHDPLGNEDYPKIINQKHFERLLGLLKSGRVIEGGRSEEKTRRIAPTILDDVTWESPVMKEEIFGPLLPVLEFESFETALSTVNQHPKPLALYLFTRSKVHEAQAIAKTSFGGGCINDTIIHLANPNLRFGGVGESGMGQYHGKGSYDTFSHTKSIMKKSNMLDIPLRYPPFKNHLSLLKKLMK
>NC_007907.1|WP_005814297.1|1315034_1316060_-|hypothetical-protein
MDNLIERYVYDVTRRLPEKDREEVSKELKSNIYDMLPENADENERKMVLYNLGSPASLAEKYRQKPRYLISPAVYEDYVRVLKWVLPLVGVVVLVIGMILGAIDAIKDGMVDLPYLISNTLSKGIVMGISAVFQALIWTTVGFVIADRTGAKANKSKEQEWRVEDLPDALPDDRGKIKLSDSIAELVLTGVFSVLGILICRGVLPVAFVIQNGDTQIRTLFSPSFLASCVPAIAVMAILAVGACIFKIKVRRWTPIVCGAVVISTIINMCIMIYLLNRPDLFSTEFTAFLQSIDWGSFDPLGFMGVGGANLFIVFIAIVVVVCSLAECGQAIYKTLKYKIQ
>NC_007907.1|WP_005814298.1|1316052_1316400_-|PadR-family-transcriptional-regulator
MSANEQMQNFITELRRGSLTLAVLGCLKQPHYGYALLQTMQEKQIDVEANTLYPLLRRLENQGLLVSDWDTSESRPRKYYTVNEKGEMVYRELMTEWKKLQSNIESICGEDKCNG
>NC_007907.1|WP_005814302.1|1316669_1318613_+|acetyltransferase
MNYSTKTNQFNEQPNRQYRGRRLRTVDHGYMPGLDGLRALAVFAVIFYHLNLSWAPGGLLGVTLFFVLSGYLITNILLKQWESTGTIDLKDFWLRRARRLLPAVFVMLAGVMVWMLLFAPERLAALKQEALAAVFYISNWYLIFHQVSYFESFGPPSPLGHLWSLAVEEQFYLLWPLLLGLGLRWIRQRKWLAVGTIALTFASAAAMALIYSPGQDPSRVYYGTDTRAFSLLVGAALAMVWPSGKMTGELTGSKKLLLDGTGALGLLAVLLMILKTNQYQPFLYQGGLLLFSIAAAVLVAVLAHPASSLGRFFSWGPWRWLGECSYGIYLWHYPVIILTNPAVNTGGVDLSRTFWQIGLSIILAVLSRHFIEDPIRYGRRKRGRRRVPALQWWQKPLGVGAKMSLGILLMVLLLFVTPNGGTGISAKAIAQNHETTEQAQGQAQEQAQNQNQAQSQTQTQNQDEQGTQAQGAEQEDNKANGEAIGTEQENEITIIGDSVMINVTPVLQEQFKGIVIDAQLGRQMYQAPEVIAGLREEGKLGKTVVIQLGNNGPFSEKQLKETLDTLPGSTEILLVNTRVPKPWEGEVNETLNKVAQSYPGARLIDWHTVSKGHNDYFYKDGVHLTQTGVEAYGEMLVKALAVGENDY
>NC_007907.1|WP_005814304.1|1318673_1319387_+|response-regulator-transcription-factor
MREKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPEMVRRLP
>NC_007907.1|WP_005814305.1|1319383_1320778_+|HAMP-domain-containing-protein
MKGIRGRLTANFMIVILVSVAILEVLLIYTVQQNYYGSLRGNLTNQVKISADMYSKYYSDTSLEDNILYNVDAFWNQSNAQVEIVDRDGKIVMDSLGAISEQEGPTEDIQDALNDQMGEWIGKLNGQKVMAVAYPLKSEGEIVGALRFIASTHEIDQDIQDTAKIFIAIGLFVAMVVGFLSIFLANTILIPLKEVTAIAESMAAGNFQIKSRKKRDDEIGKLADTLNYMAEEITKKEKLKNDFISSVSHELRTPLTSIMGWAITLQSEKFQQKEMLNDGLGIIAKESERLTRMVEELLDFSKFVSGRIKLSYEEVNMAELMEHIRKQLTPRATRETIQFTVDYPENLPDLLTDPNRLKQVLINILDNALNFTAAEGSVRFQAEVGEKDYTFTISDNGCGIAAGELPMVKEKFYKGKSSRSRNGIGLSICEEIITLMKGRLEIHSEVNVGTTVVITLPREVCAHG
>NC_007907.1|WP_005814307.1|1320770_1322261_+|hypothetical-protein
MVKKSLLLPLAFLLLFLGGCAEFSGASAGKIIPPSAQVSPLGGKWTVLEELDSNGSEGGAGQPWLGSDVQFAPGVVSFGGHVWDNPAYKIKRVKAEDYLLTKYIPSVGSSGLKSQKVDVITVYASGNYLGEFMKLDDTSMIFFVENKALLLKIVAEEADSTLVAGDTSAQELNQDSREGISGVLLGLRIPAATGYTYQTLWIAADHQQLRPILASEQIFFPRTSGFWELSVQNLPTDGMTDNLLTARNVTAKAPDLRRGNGEREGRAGTEEQTYAEPAERVINYIGNDYIAMEKRTAGINHLQVLPVDKLLSPTEIKVSDLLGDKGFNAYLNAREQAAAALREKGITSISQDESGENFGLIRKNGRWSLVGRIHYQSGGNLEYKDFDLKLIPPANLIFYDALVLSWYNIKDRVPDATDAFTSPNRDIALVKTKTKLTIYPIGADKLGETHLAELELPEGATVIMAEWATGSYVDSWEKSFLAYGAQALADGSVRMR

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Crispr_ID: NC_007907_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_2

3134947-3136689

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRISPRCasFinder
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CRT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	PILER-CR

26 spacers

cas2,cas1,cas4,cas3,cas5,cas7b

The CRISPR arrays of NC_007907_2

>merge|NC_007907|2|3134947-3136689|CRISPRCasFinder,CRT,PILER-CR
GTTTCAATTCCTCATAGGTAAGTTAACAACCTAGACCGTTCCGATTTGTCGGAAAAGCTTAATGTATTGTTTCAATCCCTCATAGGTAAACTAACAACTATCTTCTAGGGCTGAGACGGAGACTGGAGTCGCATGTTTCAATCCCTCATAGGTAAGCTAACAACGGAAAACGCCTTGAGGGTCTTAGTGAGCTAACGCTGTTTCAATCCCTCATAGGTAAGCTAACAACTCCGTCTTCGTCGCTCCATTAGGCAGCGCATTGACGTTTCAATCCCTCATAGGTAAGCTAACAACGAGGGAGACGAATAACTTAACCGCATTATCAGAGATGTTTCAATCCCTCATAGGTAAGCTAACAACCTGCGCCCCAATCCTTGCCCGTCTTTTTCAGCAGGTTTCAATCCCTTATAGGTAAGCTAACAACTAGATTTGTTATGTCTTCCTGAGATACATTCCCTGAGTTTCAATCCCTTATAGGTAAGCTAACAACTAGAGAGATTGATATTGAAAGGGATGGAATTTATAGTTTCAATCCCTTATAGGTAAGCTAACAACCTGCTTATATCCGAGTGATTTAGTCAGGATAGAACAGTTTCAATCCCTTATAGGTAAGCTAACAACTTTTAAAAAGAAAGAAGGAATTGAGATGACTAAAATGTTTCAATCCCTTATAGGTAAGCTAACAACATGAATAGTTGATGAAAGGAGAATTTGATATGAAAGGTTTCAATCCCTTATAGGTAAGCTAACAACTAAATGATGAGACTGGAGAAATTAAGGTAAAAAACAGTTTCAATCCCTTATAGGTAAGCTAACAACTTACTGTGGTTGTAGCCTTAACTGCGGCCTTCCTTAGTTTCAATCCCTTATAGGTAAGCTAACAACGCTTCATCTCCGTGATCCCTGCCTGAGACAAGAAGGTTTCAATCCCTTATAGGTAAGCTAACAACTATTGATAGCAGAGAAGTTAATTTTACTAGTGGAGGTTTCAATCCCTTATAGGTAAGCTAACAACTTAGTATGTACTCCAACTTCCGTACTCCCTCCTCAGTTTCAATCCCTTATAGGTAAGCTAACAACGGATACAAGGCCATGATTATTATGACCACATTACAGTTTCAATCCCTTATAGGTAAGCTAACAACAAAGAGGCTAGTCATTTATTTGAGGTTGAAGTAGAGTTTCAATCCCTTATAGGTAAGCTAACAACAAAGAAAGAGCAATTAAATCACTTGAAAAACTTAAGTTTCAATCCCTTATAGGTAAGCTAACAACGAAAGAGGTTGAATAATTATGCTAGAAAAAAATTTGTTTCAATCCCTTATAGGTAAGCTAACAACAAGAGGATTGACTAGGTTAGGCATAAACATTAAGTGTAGTTTCAATCCCTTATAGGTAAGCTAACAACCTACGACTGATTTCTTCCCAAATTCCTTATACTCAAGGTTTCAATCCCTTATAGGTAAGCTAACAACCATGCCCCATGCAAAGGTCATGGAGGCGATAAAGGGTTTCAATCCCTTATAGGTAAGCTAACAACCCTTGCCTTTAATGACTGCCTCTTTGCCAAGGTTTTGTTTCAATCCCTTATAGGTAAGCTAACAACAGGCCAATTTTCCTGTATCTTTCCATGGTCTTCCCATATGTTTCAATCCCTTATAGGTAAGCTAACAACTGGGGAGCCAGTGTACGTAGTTGACGTCAGTGAGCAAGGTTTCAATCCCTTATAGGTAAGCTAACAAC

>NC_007907|2|2|3134947-3136689|CRISPRCasFinder
GTTTCAATTCCTCATAGGTAAGTTAACAAC	CTAGACCGTTCCGATTTGTCGGAAAAGCTTAATGTATT
GTTTCAATCCCTCATAGGTAAACTAACAAC	TATCTTCTAGGGCTGAGACGGAGACTGGAGTCGCAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGAAAACGCCTTGAGGGTCTTAGTGAGCTAACGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCCGTCTTCGTCGCTCCATTAGGCAGCGCATTGAC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAGGGAGACGAATAACTTAACCGCATTATCAGAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTGCGCCCCAATCCTTGCCCGTCTTTTTCAGCAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAGATTTGTTATGTCTTCCTGAGATACATTCCCTGA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAGAGAGATTGATATTGAAAGGGATGGAATTTATA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CTGCTTATATCCGAGTGATTTAGTCAGGATAGAACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTTTAAAAAGAAAGAAGGAATTGAGATGACTAAAAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	ATGAATAGTTGATGAAAGGAGAATTTGATATGAAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAAATGATGAGACTGGAGAAATTAAGGTAAAAAACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTACTGTGGTTGTAGCCTTAACTGCGGCCTTCCTTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GCTTCATCTCCGTGATCCCTGCCTGAGACAAGAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TATTGATAGCAGAGAAGTTAATTTTACTAGTGGAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTAGTATGTACTCCAACTTCCGTACTCCCTCCTCA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GGATACAAGGCCATGATTATTATGACCACATTACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAAGAGGCTAGTCATTTATTTGAGGTTGAAGTAGA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAAGAAAGAGCAATTAAATCACTTGAAAAACTTAA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GAAAGAGGTTGAATAATTATGCTAGAAAAAAATTT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAGAGGATTGACTAGGTTAGGCATAAACATTAAGTGTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CTACGACTGATTTCTTCCCAAATTCCTTATACTCAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CATGCCCCATGCAAAGGTCATGGAGGCGATAAAGG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CCTTGCCTTTAATGACTGCCTCTTTGCCAAGGTTTT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AGGCCAATTTTCCTGTATCTTTCCATGGTCTTCCCATAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TGGGGAGCCAGTGTACGTAGTTGACGTCAGTGAGCAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC

>NC_007907|2|1|3134947-3136689|CRT
GTTTCAATTCCTCATAGGTAAGTTAACAAC	CTAGACCGTTCCGATTTGTCGGAAAAGCTTAATGTATT
GTTTCAATCCCTCATAGGTAAACTAACAAC	TATCTTCTAGGGCTGAGACGGAGACTGGAGTCGCAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGAAAACGCCTTGAGGGTCTTAGTGAGCTAACGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCCGTCTTCGTCGCTCCATTAGGCAGCGCATTGAC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAGGGAGACGAATAACTTAACCGCATTATCAGAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTGCGCCCCAATCCTTGCCCGTCTTTTTCAGCAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAGATTTGTTATGTCTTCCTGAGATACATTCCCTGA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAGAGAGATTGATATTGAAAGGGATGGAATTTATA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CTGCTTATATCCGAGTGATTTAGTCAGGATAGAACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTTTAAAAAGAAAGAAGGAATTGAGATGACTAAAAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	ATGAATAGTTGATGAAAGGAGAATTTGATATGAAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAAATGATGAGACTGGAGAAATTAAGGTAAAAAACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTACTGTGGTTGTAGCCTTAACTGCGGCCTTCCTTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GCTTCATCTCCGTGATCCCTGCCTGAGACAAGAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TATTGATAGCAGAGAAGTTAATTTTACTAGTGGAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTAGTATGTACTCCAACTTCCGTACTCCCTCCTCA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GGATACAAGGCCATGATTATTATGACCACATTACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAAGAGGCTAGTCATTTATTTGAGGTTGAAGTAGA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAAGAAAGAGCAATTAAATCACTTGAAAAACTTAA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GAAAGAGGTTGAATAATTATGCTAGAAAAAAATTT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAGAGGATTGACTAGGTTAGGCATAAACATTAAGTGTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CTACGACTGATTTCTTCCCAAATTCCTTATACTCAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CATGCCCCATGCAAAGGTCATGGAGGCGATAAAGG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CCTTGCCTTTAATGACTGCCTCTTTGCCAAGGTTTT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AGGCCAATTTTCCTGTATCTTTCCATGGTCTTCCCATAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TGGGGAGCCAGTGTACGTAGTTGACGTCAGTGAGCAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC

>NC_007907|2|1|3135015-3136689|PILER-CR
GTTTCAATCCCTCATAGGTAAACTAACAAC	TATCTTCTAGGGCTGAGACGGAGACTGGAGTCGCAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGAAAACGCCTTGAGGGTCTTAGTGAGCTAACGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCCGTCTTCGTCGCTCCATTAGGCAGCGCATTGAC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAGGGAGACGAATAACTTAACCGCATTATCAGAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTGCGCCCCAATCCTTGCCCGTCTTTTTCAGCAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAGATTTGTTATGTCTTCCTGAGATACATTCCCTGA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAGAGAGATTGATATTGAAAGGGATGGAATTTATA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CTGCTTATATCCGAGTGATTTAGTCAGGATAGAACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTTTAAAAAGAAAGAAGGAATTGAGATGACTAAAAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	ATGAATAGTTGATGAAAGGAGAATTTGATATGAAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TAAATGATGAGACTGGAGAAATTAAGGTAAAAAACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTACTGTGGTTGTAGCCTTAACTGCGGCCTTCCTTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GCTTCATCTCCGTGATCCCTGCCTGAGACAAGAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TATTGATAGCAGAGAAGTTAATTTTACTAGTGGAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TTAGTATGTACTCCAACTTCCGTACTCCCTCCTCA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GGATACAAGGCCATGATTATTATGACCACATTACA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAAGAGGCTAGTCATTTATTTGAGGTTGAAGTAGA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAAGAAAGAGCAATTAAATCACTTGAAAAACTTAA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	GAAAGAGGTTGAATAATTATGCTAGAAAAAAATTT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AAGAGGATTGACTAGGTTAGGCATAAACATTAAGTGTA
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CTACGACTGATTTCTTCCCAAATTCCTTATACTCAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CATGCCCCATGCAAAGGTCATGGAGGCGATAAAGG
GTTTCAATCCCTTATAGGTAAGCTAACAAC	CCTTGCCTTTAATGACTGCCTCTTTGCCAAGGTTTT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	AGGCCAATTTTCCTGTATCTTTCCATGGTCTTCCCATAT
GTTTCAATCCCTTATAGGTAAGCTAACAAC	TGGGGAGCCAGTGTACGTAGTTGACGTCAGTGAGCAAG
GTTTCAATCCCTTATAGGTAAGCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225288
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225095
NC_007907.1\|WP_035214020.1\|3133885_3134104_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	unknown	unknown	gnl\|CDD\|212155
NC_007907.1\|WP_011460578.1\|3129491_3129962_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NC_007907.1\|WP_005817554.1\|3136833_3137097_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_007907.1\|WP_005811940.1\|3134237_3134456_+\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_041272463.1\|3144939_3145176_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011460580.1\|3130994_3131630_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|366912
NC_007907.1\|WP_005817555.1\|3137197_3138193_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_007907.1\|WP_015944881.1\|3132002_3132242_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_007907.1\|WP_005811924.1\|3130278_3130989_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|225419
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_007907.1\|WP_005811935.1\|3132921_3133797_+\|DUF3102-domain-containing-protein	unknown	unknown	gnl\|CDD\|371455
NC_007907.1\|WP_011460576.1\|3127784_3128990_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341464
NC_007907.1\|WP_015944878.1\|3128946_3129363_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NC_007907.1\|WP_011460582.1\|3138261_3138771_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_007907.1\|WP_041272459.1\|3132292_3132517_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	gnl\|CDD\|225288	COG2433, COG2433, Uncharacterized conserved protein [Function unknown].	0.0011602
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	3.54523e-30
NC_007907.1\|WP_035214020.1\|3133885_3134104_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.96845e-17
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	gnl\|CDD\|212155	cd11586, VbhA_like, VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.	0.000484945
NC_007907.1\|WP_011460578.1\|3129491_3129962_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.89499e-47
NC_007907.1\|WP_005817554.1\|3136833_3137097_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.63322e-33
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.60285e-76
NC_007907.1\|WP_011460582.1\|3138261_3138771_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.90839e-77
NC_007907.1\|WP_011460580.1\|3130994_3131630_-\|molecular-chaperone-DnaJ	gnl\|CDD\|366912	pfam02085, Cytochrom_CIII, Class III cytochrome C family.	4.30868e-08
NC_007907.1\|WP_005817555.1\|3137197_3138193_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	0
NC_007907.1\|WP_015944881.1\|3132002_3132242_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	6.02559e-20
NC_007907.1\|WP_005811924.1\|3130278_3130989_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|225419	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion].	1.25623e-07
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.52912e-36
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.31172e-21
NC_007907.1\|WP_005811935.1\|3132921_3133797_+\|DUF3102-domain-containing-protein	gnl\|CDD\|371455	pfam11300, DUF3102, Protein of unknown function (DUF3102). This family of proteins has no known function.	2.21448e-70
NC_007907.1\|WP_011460576.1\|3127784_3128990_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341464	cd08185, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase-like (ADH) proteins. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized.	0
NC_007907.1\|WP_015944878.1\|3128946_3129363_-\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.87042e-53
NC_007907.1\|WP_041272459.1\|3132292_3132517_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	9.82891e-15

>NC_007907.1|WP_005811940.1|3134237_3134456_+|hypothetical-protein
MDTAKAKRALKKLAKQKGISKKEIYREIEIAIAEAMTSPEPQAQAFWKSIPHRRGQPTPEDIIAYIADRVKE
>NC_007907.1|WP_035214020.1|3133885_3134104_-|helix-turn-helix-transcriptional-regulator
MEYGTIRIKLNELIEKEGISKNKLSHRAEMQRSQINNYCNNSISRLDIDVLARICTVLNCEIGDLLEFVPPK
>NC_007907.1|WP_005811935.1|3132921_3133797_+|DUF3102-domain-containing-protein
MKEGKERSGVAMNPTVPERTSLIIAVEINSIKDQTEKLVLHNFIEIGRRLHEAKALLPHGEWLQWLEESVDFSPNRAAKLMRLYDAYGLPHSSLLDSDAQDQVLSKLSYTQALILLGVPEEERTQLLLDLDIENMSTRELKKAVDKQKQIQQEKERAEQENTALRQALDGVKEANTELAKERDSLKQEAVELRKTQQALQENVEKATLQNKKLKENMNYKSYQRVRNDLAAAQTKLFTSQVAFKYEALERAFKELSYELDLLANLDAQVHAGYMSKLNDFLLKAMRGRMQG
>NC_007907.1|WP_041272459.1|3132292_3132517_-|DUF1659-domain-containing-protein
MAVTSTPLSSALVIVYQAGLTPLGAPVTRQKSLNGLQFDADEQAIYNAAHALFSLSQYSVLDVLNRKTFELLEE
>NC_007907.1|WP_015944881.1|3132002_3132242_-|DUF2922-domain-containing-protein
MAITTTKVVRLTFTTTGGKTFSITIPNPKDDLQQAEAVAVMNSLIESDLFLTAGGSLLGIRDIKVVDTQTNDLYDPPQV
>NC_007907.1|WP_011460580.1|3130994_3131630_-|molecular-chaperone-DnaJ
MNKKKRWAFKGIIFTLFFSLWLFANGAEVLAQLNCNQCHADVANEFKSSVHSSLSCTSCHSDVTTYPHPESAKVDKKKSVAMCTTCHTGRVEDSYQHSFHGKAVFLGSQRSASCVDCHSAHEVLSHNNPNSQVAKENVPQTCAKCHDNPSPGFAQGTEHFELSAMGPGKPMYYTAKFFVWLTMIAMTLLVIHIELQLYRELRTILQKRRRS
>NC_007907.1|WP_005811924.1|3130278_3130989_-|cytochrome-b/b6-domain-containing-protein
MGKEQVYQRFDIHQRIQHMGMFISFFVLTITGLPIKFEQSRLSQGVVSLFGGFDNLFYVHLLGGVLMIFASVYHLIYLVVVPLGGKKKSWAIVPTFKDFKDLIQNLGYFFGFKKEPARFDRYSYKEKFDYWAVFWGMVIMAGSGLMMWYPQFFTLFLPRWVIDSSRYAHTDEAILAISAIFIWHFYNVHFNNRYFPMSKAWYVGTLTREEMEEDHPIELERIEREPNVLSKDKTKE
>NC_007907.1|WP_011460578.1|3129491_3129962_+|MerR-family-transcriptional-regulator
MQQYSIGEVANIAGIAISTLRYYDREGLFPNLDRSEGGTRKFTDTEIETLGIIECLKTSGLSIKEIKLFLDWCQEGNSSLQKRRNLFYERLEVVTKQMEELQKTLNTLRFKCWYYDTALAAGTEEVPKNLPPEEIPEDILAYQRSGCLNNSGHKHL
>NC_007907.1|WP_015944878.1|3128946_3129363_-|cupin-domain-containing-protein
MPNKEVFPKGSQAVANFTGAAFVNMLVPDGSGTYNCQVYDVIFEPGCRNDWHSHPGGQILLCTDGIGYYQEKDQPARRLQRGDVVEIPPQVEHWHGAAPDSSFTHIGISPNTRKGGATWLLPVTDEEYQQATGGNNHV
>NC_007907.1|WP_011460576.1|3127784_3128990_-|iron-containing-alcohol-dehydrogenase
MKNINKQQEEIIMFNMYVPTRFVFGSGRLRELHQQKMPGKKALITISNGKSVRENGALDRTQEQLRLAGVAMVVFDKIGANPTKTAVMEGAKSARDHGCDFIVALGGGSVMDAAKAIAMMATNDGDLWDYVGGKTGKGQALRHEPLPLVCITTTAGTGSEADQWGVVTNEETNEKIGVGGYDASFPVVSIIDPELMVSVPPKFTAYQGFDALFHATEGYISKFASPMSDMYALTAIENVGNYLVRACRDGRDMEAREGMAFANTLSGVVMTVSVTTAEHSLEHAMSAYHPELPHGAGLIMISRAFYEFFIEKHACDQRFVRMAQALGMKDAARPEDFITMLVKLQENCGVADLKMSDYGMTPDEFDKLAANARETMGGLFAANPYAMTHEDCVEVYRKSYR
>NC_007907.1|WP_005817554.1|3136833_3137097_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDMGEKRVAKALKRCRKYLNWVQNSVFEGEISESNLAKLKMELDRIIVPEEDSVIIYTLRTTRYSEREIMGLRKGGQNLII
>NC_007907.1|WP_005817555.1|3137197_3138193_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFSNGQLRRKDDTIFFVNEEGDQKYIPVEDTSELMVFGEVDINKRFLEFCTQKEIIIHYFNNYGYYSGTFYPREHYNSGYMILKQAEAYLNEERRLLLARQFVNGAFLNIRQVLKYYANRGKEVGPRLTEIEKLSEGIGAAGTIPELMAFEGNIREHYYKAFDAIHGHPEFVFEGRSKRPPKNAMNTLISFGNSIVYSTVLSEIYKTHLDPRIGYLHTTNFRRFSLNLDVAEIFKPILVDRVIFTLIGKKMIKKSDFKKESGGLMLKENGRRVFVEELENRLKTTINHRDIGTPVSYRRLLRLELYKLEKHLMGEKDYEPFVSQW
>NC_007907.1|WP_011460582.1|3138261_3138771_-|CRISPR-associated-protein-Cas4
MEHPEFNLTGTHIWYYYCCPREVWLMLRQVNPDEDDSNLDLGRFIHEMSYARDKNKEISLGNIRLDIVRQDKEGLVIGEVKKSSKYAKSARMQLGFYLLELKERGIEAKGELFFPKERKKEEVALTEDMEKELLETMEKIRGIALLERPPQPQKIHFCRNCAYKEFCWA
>NC_007907.1|WP_041272460.1|3138793_3141211_-|CRISPR-associated-helicase/endonuclease-Cas3
MSPLIPFAQCIARPDEQGRTHLLKDHLLGVKEAVEQRLKSECCPYCHDRIFIRLAGLAGVCHDMAKAHRKWQSYIRGQDKGGPNHAPEGAFLFSYLGFHLLQQESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEKMDLSGITKFMEQIYPELCQVPITAEALDQWIDRLYDVLQEAYDGLDLGYSPDYGKAMAQLTFWRELTTALIAGDRFHVAPMERVGFSQEDHIRHDRAMDEFCRNNGEQVMADIRSQAQRQILNQLARDPRRRIYTLEMPTGYGKTITALKIAAWLGREQGYERIIYVAPYLSILEQTSGVMEKAMGASVLEHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTLRRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQPGCLAVNPVQQIERYQVEQKGEMDERGVADYLLKRSEILAADERGLSQAAILNTIADAYLVYKQLAAKVEPSQLKLLHGMMIPLHKRVEIEKIKHFQAENKREGQYVVSTQIIEAGVDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSELQKLTDKLLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQFKPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRLSFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAVEGFDAII
>NC_007907.1|WP_011460584.1|3141896_3142151_-|hypothetical-protein
MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSETQAISKKVDMTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_011460586.1|3143882_3144518_-|Fic-family-protein
MRDPYVYPNTDVLINRHDVRDEADLAEMEAEYTSIRLKQITETPLPGNYDFQHFCEFHKWVFQDIYEWAGVPRTIDIEKPEPALGGISIEYSPVDEIEPTAKKVLDTMRDAAWDKFSLDEKALKFSKYMAELWKIHCFREGNTRTVVTFCCQFAESRGFSVDRTLFQKHSAYVRTSLVAASAYFSDLGDRAQPEYLIRIVRDSIERGRRKA
>NC_007907.1|WP_041272462.1|3144510_3144690_-|antitoxin-VbhA-family-protein
MTKSDAWDYALGIIKVDGLEPSEEFLELVEKEKRGEITDQDILKHLDQKYKMKGKKQDA
>NC_007907.1|WP_041272463.1|3144939_3145176_-|hypothetical-protein
MDKLDIILQRLDSLDRIEAEIKALKADHRETYKKLSKIDEISVMQGLTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_011460587.1|3146325_3147021_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILGIEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEEYTEQLLDFLTGERAVYTTYLGTAYALTKPILYRVYPEVSYPVAEGKEIEMRTVVPTALIREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDLRVAQFGEDLVCLV
>NC_007907.1|WP_041272464.1|3147064_3148015_-|type-I-CRISPR-associated-protein-Cas7
MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMDSTAEGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFDLTRLLAAVAEKQDKIAQCRIWTHPGVTISGDIAPWLQPLW

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Crispr_ID: NC_007907_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_3

3142336-3143687

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRISPRCasFinder
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	PILER-CR

20 spacers

cas3,cas4,cas1,cas2,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_007907_3

>merge|NC_007907|3|3142336-3143687|CRISPRCasFinder,CRT,PILER-CR
ATTTCAATTCCTTATAGGTAAGCTAACAACATTAGGGCGATTACAAGAAGAGGGTCACATTTTTTAGTTTCAATTCCTCATAGGTAAACTAACAACTGAATTGCAGGCTAATGTAAAATTACTCGAATCATGTTTCAATCTCTCATAGGTAAGCTAACAACGATAGTTCGCGGAGGGCTTCGGCGTAGGTTTGGGGTTTCAATCCCTCATAGGTAAGCTAACAACGATCTGTTCATCGGCCAGTAGAACAGTAGTTTCGAGGTTTCAATCCCTCATAGGTAAGCTAACAACTATACCCGGGCAGGCCATACGGCGTTTCTGGGGTCAATGTTTCAATCCCTCATAGGTAAGCTAACAACTTTCCCAATCACCCGTAAACACTCCGATTACAAAATGTTTCAATCCCTCATAGGTAAGCTAACAACTGATCGATGCCAATGGGTATTTACTGCCTTGGTATAGTTTCAATCCCTCATAGGTAAGCTAACAACGAAATTTGCTGCACTGTACTTAGGAGGTGATAAATGTTTCAATCCCTCATAGGTAAGCTAACAACTGATATGGTCCCATTCTGGTTATCGTCGATTACGGAGGTTTCAATCCCTCATAGGTAAGCTAACAACTCAGGGCTTCCGCACTCATTTTAGCCACCCCTGCATGTTTCAATCCCTCATAGGTAAGCTAACAACCAATTGCGGGAAGTTCCCATGTCGTTATCATTTCGCCGTTTCAATCCCTCATAGGTAAGCTAACAACGAATTCCTTTTGCTCAGGTTGATTAAGTATTTCCTGTTTCAATCCCTCATAGGTAAGCTAACAACTAAGGAGGGCTTTGCCGATGTTGATGGTGTTTATTGAGTTTCAATCCCTCATAGGTAAGCTAACAACTAGGAGGTGCATTGATTTGCACAAGGAAGAATTTGCATTGTTTCAATCCCTCATAGGTAAGCTAACAACATGCGGGAGAATAGGGGAGTTGTGTTGGAATGAAAAGTTTCAATCCCTCATAGGTAAGCTAACAACCGACAATGCAGTGTTGCAGGAACTGGCAGTTGCGTTTCAATCCCTCATAGGTAAGCTAACAACACATCCACGACATCAAGCAAGGCGCCTACTTCAACGTTTCAATCCCTCATAGGTAAGCTAACAACTGTTATGATGAGTAAAAAATGTCGGAGTATTTATTGTTTCAATCCCTCATAGGTAAGCTAACAACCCGGAGAAAAGCTTCTTTTCGCCACTGACACCTACTATCTGTTTCAATCCCTCATAGGTAAGCTAACAACGGAATGGAGATTTGGTAAGGAGTAGATAGTAATGAGGTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|3|3|3142336-3143687|CRISPRCasFinder
ATTTCAATTCCTTATAGGTAAGCTAACAAC	ATTAGGGCGATTACAAGAAGAGGGTCACATTTTTTA
GTTTCAATTCCTCATAGGTAAACTAACAAC	TGAATTGCAGGCTAATGTAAAATTACTCGAATCAT
GTTTCAATCTCTCATAGGTAAGCTAACAAC	GATAGTTCGCGGAGGGCTTCGGCGTAGGTTTGGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GATCTGTTCATCGGCCAGTAGAACAGTAGTTTCGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATACCCGGGCAGGCCATACGGCGTTTCTGGGGTCAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTCCCAATCACCCGTAAACACTCCGATTACAAAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGATCGATGCCAATGGGTATTTACTGCCTTGGTATA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAAATTTGCTGCACTGTACTTAGGAGGTGATAAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGATATGGTCCCATTCTGGTTATCGTCGATTACGGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCAGGGCTTCCGCACTCATTTTAGCCACCCCTGCAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CAATTGCGGGAAGTTCCCATGTCGTTATCATTTCGCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAATTCCTTTTGCTCAGGTTGATTAAGTATTTCCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TAAGGAGGGCTTTGCCGATGTTGATGGTGTTTATTGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TAGGAGGTGCATTGATTTGCACAAGGAAGAATTTGCATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATGCGGGAGAATAGGGGAGTTGTGTTGGAATGAAAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGACAATGCAGTGTTGCAGGAACTGGCAGTTGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACATCCACGACATCAAGCAAGGCGCCTACTTCAAC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGTTATGATGAGTAAAAAATGTCGGAGTATTTATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCGGAGAAAAGCTTCTTTTCGCCACTGACACCTACTATCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGAATGGAGATTTGGTAAGGAGTAGATAGTAATGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|3|2|3142336-3143687|CRT
ATTTCAATTCCTTATAGGTAAGCTAACAAC	ATTAGGGCGATTACAAGAAGAGGGTCACATTTTTTA
GTTTCAATTCCTCATAGGTAAACTAACAAC	TGAATTGCAGGCTAATGTAAAATTACTCGAATCAT
GTTTCAATCTCTCATAGGTAAGCTAACAAC	GATAGTTCGCGGAGGGCTTCGGCGTAGGTTTGGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GATCTGTTCATCGGCCAGTAGAACAGTAGTTTCGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATACCCGGGCAGGCCATACGGCGTTTCTGGGGTCAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTCCCAATCACCCGTAAACACTCCGATTACAAAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGATCGATGCCAATGGGTATTTACTGCCTTGGTATA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAAATTTGCTGCACTGTACTTAGGAGGTGATAAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGATATGGTCCCATTCTGGTTATCGTCGATTACGGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCAGGGCTTCCGCACTCATTTTAGCCACCCCTGCAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CAATTGCGGGAAGTTCCCATGTCGTTATCATTTCGCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAATTCCTTTTGCTCAGGTTGATTAAGTATTTCCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TAAGGAGGGCTTTGCCGATGTTGATGGTGTTTATTGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TAGGAGGTGCATTGATTTGCACAAGGAAGAATTTGCATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATGCGGGAGAATAGGGGAGTTGTGTTGGAATGAAAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGACAATGCAGTGTTGCAGGAACTGGCAGTTGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACATCCACGACATCAAGCAAGGCGCCTACTTCAAC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGTTATGATGAGTAAAAAATGTCGGAGTATTTATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCGGAGAAAAGCTTCTTTTCGCCACTGACACCTACTATCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGAATGGAGATTTGGTAAGGAGTAGATAGTAATGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|3|2|3142467-3143687|PILER-CR
GTTTCAATCTCTCATAGGTAAGCTAACAAC	GATAGTTCGCGGAGGGCTTCGGCGTAGGTTTGGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GATCTGTTCATCGGCCAGTAGAACAGTAGTTTCGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATACCCGGGCAGGCCATACGGCGTTTCTGGGGTCAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTCCCAATCACCCGTAAACACTCCGATTACAAAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGATCGATGCCAATGGGTATTTACTGCCTTGGTATA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAAATTTGCTGCACTGTACTTAGGAGGTGATAAAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGATATGGTCCCATTCTGGTTATCGTCGATTACGGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TCAGGGCTTCCGCACTCATTTTAGCCACCCCTGCAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CAATTGCGGGAAGTTCCCATGTCGTTATCATTTCGCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GAATTCCTTTTGCTCAGGTTGATTAAGTATTTCCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TAAGGAGGGCTTTGCCGATGTTGATGGTGTTTATTGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TAGGAGGTGCATTGATTTGCACAAGGAAGAATTTGCATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATGCGGGAGAATAGGGGAGTTGTGTTGGAATGAAAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGACAATGCAGTGTTGCAGGAACTGGCAGTTGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACATCCACGACATCAAGCAAGGCGCCTACTTCAAC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGTTATGATGAGTAAAAAATGTCGGAGTATTTATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCGGAGAAAAGCTTCTTTTCGCCACTGACACCTACTATCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGAATGGAGATTTGGTAAGGAGTAGATAGTAATGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225288
NC_007907.1\|WP_015944888.1\|3150556_3150856_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_007907.1\|WP_035214020.1\|3133885_3134104_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	unknown	unknown	gnl\|CDD\|212155
NC_007907.1\|WP_011460589.1\|3148007_3150065_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NC_007907.1\|WP_011460590.1\|3150222_3150567_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_007907.1\|WP_005817554.1\|3136833_3137097_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_007907.1\|WP_041272867.1\|3154838_3155579_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187889
NC_007907.1\|WP_041272463.1\|3144939_3145176_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011460582.1\|3138261_3138771_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_007907.1\|WP_005817555.1\|3137197_3138193_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_007907.1\|WP_015944881.1\|3132002_3132242_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_007907.1\|WP_041272465.1\|3155863_3156409_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225095
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_007907.1\|WP_005811935.1\|3132921_3133797_+\|DUF3102-domain-containing-protein	unknown	unknown	gnl\|CDD\|371455
NC_007907.1\|WP_005811940.1\|3134237_3134456_+\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_041272459.1\|3132292_3132517_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	gnl\|CDD\|225288	COG2433, COG2433, Uncharacterized conserved protein [Function unknown].	0.0011602
NC_007907.1\|WP_015944888.1\|3150556_3150856_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	1.43815e-11
NC_007907.1\|WP_035214020.1\|3133885_3134104_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.96845e-17
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	gnl\|CDD\|212155	cd11586, VbhA_like, VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.	0.000484945
NC_007907.1\|WP_011460590.1\|3150222_3150567_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.72179e-26
NC_007907.1\|WP_005817554.1\|3136833_3137097_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.63322e-33
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.60285e-76
NC_007907.1\|WP_041272867.1\|3154838_3155579_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.26485e-33
NC_007907.1\|WP_041272465.1\|3155863_3156409_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.26047e-35
NC_007907.1\|WP_041272459.1\|3132292_3132517_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	9.82891e-15
NC_007907.1\|WP_005817555.1\|3137197_3138193_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	0
NC_007907.1\|WP_015944881.1\|3132002_3132242_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	6.02559e-20
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	3.54523e-30
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.52912e-36
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.31172e-21
NC_007907.1\|WP_005811935.1\|3132921_3133797_+\|DUF3102-domain-containing-protein	gnl\|CDD\|371455	pfam11300, DUF3102, Protein of unknown function (DUF3102). This family of proteins has no known function.	2.21448e-70
NC_007907.1\|WP_011460582.1\|3138261_3138771_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.90839e-77

>NC_007907.1|WP_011460584.1|3141896_3142151_-|hypothetical-protein
MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSETQAISKKVDMTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_041272460.1|3138793_3141211_-|CRISPR-associated-helicase/endonuclease-Cas3
MSPLIPFAQCIARPDEQGRTHLLKDHLLGVKEAVEQRLKSECCPYCHDRIFIRLAGLAGVCHDMAKAHRKWQSYIRGQDKGGPNHAPEGAFLFSYLGFHLLQQESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEKMDLSGITKFMEQIYPELCQVPITAEALDQWIDRLYDVLQEAYDGLDLGYSPDYGKAMAQLTFWRELTTALIAGDRFHVAPMERVGFSQEDHIRHDRAMDEFCRNNGEQVMADIRSQAQRQILNQLARDPRRRIYTLEMPTGYGKTITALKIAAWLGREQGYERIIYVAPYLSILEQTSGVMEKAMGASVLEHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTLRRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQPGCLAVNPVQQIERYQVEQKGEMDERGVADYLLKRSEILAADERGLSQAAILNTIADAYLVYKQLAAKVEPSQLKLLHGMMIPLHKRVEIEKIKHFQAENKREGQYVVSTQIIEAGVDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSELQKLTDKLLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQFKPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRLSFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAVEGFDAII
>NC_007907.1|WP_011460582.1|3138261_3138771_-|CRISPR-associated-protein-Cas4
MEHPEFNLTGTHIWYYYCCPREVWLMLRQVNPDEDDSNLDLGRFIHEMSYARDKNKEISLGNIRLDIVRQDKEGLVIGEVKKSSKYAKSARMQLGFYLLELKERGIEAKGELFFPKERKKEEVALTEDMEKELLETMEKIRGIALLERPPQPQKIHFCRNCAYKEFCWA
>NC_007907.1|WP_005817555.1|3137197_3138193_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFSNGQLRRKDDTIFFVNEEGDQKYIPVEDTSELMVFGEVDINKRFLEFCTQKEIIIHYFNNYGYYSGTFYPREHYNSGYMILKQAEAYLNEERRLLLARQFVNGAFLNIRQVLKYYANRGKEVGPRLTEIEKLSEGIGAAGTIPELMAFEGNIREHYYKAFDAIHGHPEFVFEGRSKRPPKNAMNTLISFGNSIVYSTVLSEIYKTHLDPRIGYLHTTNFRRFSLNLDVAEIFKPILVDRVIFTLIGKKMIKKSDFKKESGGLMLKENGRRVFVEELENRLKTTINHRDIGTPVSYRRLLRLELYKLEKHLMGEKDYEPFVSQW
>NC_007907.1|WP_005817554.1|3136833_3137097_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDMGEKRVAKALKRCRKYLNWVQNSVFEGEISESNLAKLKMELDRIIVPEEDSVIIYTLRTTRYSEREIMGLRKGGQNLII
>NC_007907.1|WP_005811940.1|3134237_3134456_+|hypothetical-protein
MDTAKAKRALKKLAKQKGISKKEIYREIEIAIAEAMTSPEPQAQAFWKSIPHRRGQPTPEDIIAYIADRVKE
>NC_007907.1|WP_035214020.1|3133885_3134104_-|helix-turn-helix-transcriptional-regulator
MEYGTIRIKLNELIEKEGISKNKLSHRAEMQRSQINNYCNNSISRLDIDVLARICTVLNCEIGDLLEFVPPK
>NC_007907.1|WP_005811935.1|3132921_3133797_+|DUF3102-domain-containing-protein
MKEGKERSGVAMNPTVPERTSLIIAVEINSIKDQTEKLVLHNFIEIGRRLHEAKALLPHGEWLQWLEESVDFSPNRAAKLMRLYDAYGLPHSSLLDSDAQDQVLSKLSYTQALILLGVPEEERTQLLLDLDIENMSTRELKKAVDKQKQIQQEKERAEQENTALRQALDGVKEANTELAKERDSLKQEAVELRKTQQALQENVEKATLQNKKLKENMNYKSYQRVRNDLAAAQTKLFTSQVAFKYEALERAFKELSYELDLLANLDAQVHAGYMSKLNDFLLKAMRGRMQG
>NC_007907.1|WP_041272459.1|3132292_3132517_-|DUF1659-domain-containing-protein
MAVTSTPLSSALVIVYQAGLTPLGAPVTRQKSLNGLQFDADEQAIYNAAHALFSLSQYSVLDVLNRKTFELLEE
>NC_007907.1|WP_015944881.1|3132002_3132242_-|DUF2922-domain-containing-protein
MAITTTKVVRLTFTTTGGKTFSITIPNPKDDLQQAEAVAVMNSLIESDLFLTAGGSLLGIRDIKVVDTQTNDLYDPPQV
>NC_007907.1|WP_011460586.1|3143882_3144518_-|Fic-family-protein
MRDPYVYPNTDVLINRHDVRDEADLAEMEAEYTSIRLKQITETPLPGNYDFQHFCEFHKWVFQDIYEWAGVPRTIDIEKPEPALGGISIEYSPVDEIEPTAKKVLDTMRDAAWDKFSLDEKALKFSKYMAELWKIHCFREGNTRTVVTFCCQFAESRGFSVDRTLFQKHSAYVRTSLVAASAYFSDLGDRAQPEYLIRIVRDSIERGRRKA
>NC_007907.1|WP_041272462.1|3144510_3144690_-|antitoxin-VbhA-family-protein
MTKSDAWDYALGIIKVDGLEPSEEFLELVEKEKRGEITDQDILKHLDQKYKMKGKKQDA
>NC_007907.1|WP_041272463.1|3144939_3145176_-|hypothetical-protein
MDKLDIILQRLDSLDRIEAEIKALKADHRETYKKLSKIDEISVMQGLTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_011460587.1|3146325_3147021_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILGIEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEEYTEQLLDFLTGERAVYTTYLGTAYALTKPILYRVYPEVSYPVAEGKEIEMRTVVPTALIREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDLRVAQFGEDLVCLV
>NC_007907.1|WP_041272464.1|3147064_3148015_-|type-I-CRISPR-associated-protein-Cas7
MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMDSTAEGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFDLTRLLAAVAEKQDKIAQCRIWTHPGVTISGDIAPWLQPLW
>NC_007907.1|WP_011460589.1|3148007_3150065_-|hypothetical-protein
MLAEAIIRIGRPIKDSDMPCRDKIRLLTDVSSENCKNFFRHVFLLEITEKDIGFQPMEVGDRETKEKKETFQVNPVRNVAFPIFYPNGGNPLHAQGIYPLPCYLVYDPHIKAMKDEEAFKKEFLLPRLGKTLGYRDRTEAERAALADRIAELLAARGAELITEDKQLGVMMIFDQELPMFHKYQEKRENELSMWIAESPLTPGAHLHLDGEEVLKRIGRAKFYEAAELGKEKNALSTFTNRKTDEVVSIYNKSWLWLSPTWESPRSIYWNDDEWTKGIKVDEESYAAYLYGVQFLKEIQVPISSAVLKEMFAPITSVEAKKMMSVESFESIYGIPMVLPLTDGDSRQLFAKYQKLLKKRDEKQSDGDLQLKVLAGIDRIVPEMGDEHRLTILYYSGDLSRGNMHIRAMIEDVIPSVAGQVEKILYRLSSRETGKIQEAFGVREQPIYRTQNLPALLANVYGPGYVWESLRSVFHKEPLRWERLHMATARKLNELANKEDRGQMLQELVFHYSFLYFLKEYEEKILHKQGGVGTLADWDEFKALYAQGKLELSHLVKAEQLGFAAGLLLKQFSNSYYQKTGKDFLKQRVMKFGSKLTPAMIWKNGLLRCEELAQQWSMKLGSNFRPMLAQTLLGFLEKEQELIPEKDTFMTAFWSGYLLYKSDKNNDGGTGSDPEVKEEDGGRDNE
>NC_007907.1|WP_011460590.1|3150222_3150567_-|DUF86-domain-containing-protein
MTDKDRIILHKIINYAQEIIGYVDNMDYKQFVGDRKTIAACAFCIGQIGELAKDISAETQELNPEIAWKSIRGMRNKIVHDYENVNLGVLWGTIGESLPELVQQINQLLGEKRT
>NC_007907.1|WP_015944888.1|3150556_3150856_-|nucleotidyltransferase-domain-containing-protein
MSMDVAEIKDKLFPIFEAAPIYQAILFGSFAQNKATDSSDVDIVIDSRGELLNIKFYGVLEDITQTLGRKVDLFEISEIRPGSPIDHEIRQQGVLLYDR
>NC_007907.1|WP_041272867.1|3154838_3155579_-|CRISPR-associated-endoribonuclease-Cas6
MNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKGYSDGNRAFKLFCFSLIQGVYQMDRVKKRIAFEGELKLTVSSPLQDFCQSLVNVLLTKGVMRLGAQELEIDRISAGQYEVREHKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETDYSRLFNENLRKKYRALYGSEGPEGEVEIRPLGIQRMRIVNYKNTVIKGYAGKLLLSGPKELLQLAVDGGIGSKNSQGFGCVEIING
>NC_007907.1|WP_041272465.1|3155863_3156409_-|GNAT-family-N-acetyltransferase
MIYFETPRLIFRDWKEQDLREFRMMNKDSRVMRYFPETLTEQETDSLYEMIRDELSLGYGAYAVETKDNHEFIGFIGFHRATFAAAFTPCVEIAWRLNYAAWGKGYATEGAKACLDYGFNTLGLDEVYSFTAKANLPSENVMKKLGMKKVMEFKHPHVAENSPLAEHVLYMCQLKSREEDG

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Crispr_ID: NC_007907_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_4

3145314-3146139

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRISPRCasFinder
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	PILER-CR

12 spacers

cas3,cas4,cas1,cas2,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_007907_4

>merge|NC_007907|4|3145314-3146139|CRISPRCasFinder,CRT,PILER-CR
CTCCAGTTTCCTTATAGGTAAGCTAACACCCCAGGTTCCCCCGGCATGGTGCTTGTTGGCATTCCTGTTTCAATCCCTCATAGGTAAGCTAACAACTTCCTTTTTGGCTGCGTAGGAAACATATTTTTTCAGCTGTTTCAATCCCTCATAGGTAAGCTAACAACTTCGTCCTATATCAAACGCTTCCCCATAATCCTTTTGCTGTTTCAATCCCTCATAGGTAAGCTAACAACATTGGCGCAGATCTGGGTTGTATTGGTTAAAGACGGGTTTCAATCCCTCATAGGTAAGCTAACAACTTTGGGCATGCTGCTTTATAGCGCGCTCTAAATCCCGTTTCAATCCCTCATAGGTAAGCTAACAACTTTAGCAGGGAGATTGGGGGGCGTCAAAGATGTGCGTTTCAATCCCTCATAGGTAAGCTAACAACATATTGGTTTTTAGAATATCGGGACAATAGTTACACTGTTTCAATCCCTCATAGGTAAGCTAACAACTTATCCCGGTGCTGATGGTTATGTTGAAGCATATCGGTTTCAATCCCTCATAGGTAAGCTAACAACGCTGGCCTACGATCTTCATGTTGATTGGTATGACTAGTTTCAATCCCTCATAGGTAAGCTAACAACTTGAATTCTTCACGCGCATTATCAATTTGTTCTTTGTTTCAATCCCTCATAGGTAAGCTAACAACGATAATGTCGGGGTATCCGGTGGAATAGATGTGCATCGGTTTCAATCCCTCATAGGTAAGCTAACAACCGGCCCAGGAATCGGCCGCATGGTGGATCAAGAAGTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|4|4|3145314-3146139|CRISPRCasFinder
CTCCAGTTTCCTTATAGGTAAGCTAACACC	CCAGGTTCCCCCGGCATGGTGCTTGTTGGCATTCCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTCCTTTTTGGCTGCGTAGGAAACATATTTTTTCAGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTCGTCCTATATCAAACGCTTCCCCATAATCCTTTTGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTGGCGCAGATCTGGGTTGTATTGGTTAAAGACGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTGGGCATGCTGCTTTATAGCGCGCTCTAAATCCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTAGCAGGGAGATTGGGGGGCGTCAAAGATGTGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATATTGGTTTTTAGAATATCGGGACAATAGTTACACT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTATCCCGGTGCTGATGGTTATGTTGAAGCATATCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GCTGGCCTACGATCTTCATGTTGATTGGTATGACTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTGAATTCTTCACGCGCATTATCAATTTGTTCTTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GATAATGTCGGGGTATCCGGTGGAATAGATGTGCATCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGGCCCAGGAATCGGCCGCATGGTGGATCAAGAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|4|3|3145314-3146139|CRT
CTCCAGTTTCCTTATAGGTAAGCTAACACC	CCAGGTTCCCCCGGCATGGTGCTTGTTGGCATTCCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTCCTTTTTGGCTGCGTAGGAAACATATTTTTTCAGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTCGTCCTATATCAAACGCTTCCCCATAATCCTTTTGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTGGCGCAGATCTGGGTTGTATTGGTTAAAGACGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTGGGCATGCTGCTTTATAGCGCGCTCTAAATCCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTAGCAGGGAGATTGGGGGGCGTCAAAGATGTGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATATTGGTTTTTAGAATATCGGGACAATAGTTACACT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTATCCCGGTGCTGATGGTTATGTTGAAGCATATCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GCTGGCCTACGATCTTCATGTTGATTGGTATGACTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTGAATTCTTCACGCGCATTATCAATTTGTTCTTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GATAATGTCGGGGTATCCGGTGGAATAGATGTGCATCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGGCCCAGGAATCGGCCGCATGGTGGATCAAGAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|4|3|3145380-3146139|PILER-CR
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTCCTTTTTGGCTGCGTAGGAAACATATTTTTTCAGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTCGTCCTATATCAAACGCTTCCCCATAATCCTTTTGCT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTGGCGCAGATCTGGGTTGTATTGGTTAAAGACGG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTGGGCATGCTGCTTTATAGCGCGCTCTAAATCCC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTTAGCAGGGAGATTGGGGGGCGTCAAAGATGTGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATATTGGTTTTTAGAATATCGGGACAATAGTTACACT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTATCCCGGTGCTGATGGTTATGTTGAAGCATATCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GCTGGCCTACGATCTTCATGTTGATTGGTATGACTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTGAATTCTTCACGCGCATTATCAATTTGTTCTTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GATAATGTCGGGGTATCCGGTGGAATAGATGTGCATCG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CGGCCCAGGAATCGGCCGCATGGTGGATCAAGAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225288
NC_007907.1\|WP_173361720.1\|3156654_3156822_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_158303418.1\|3156521_3156662_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_015944888.1\|3150556_3150856_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225095
NC_007907.1\|WP_035214020.1\|3133885_3134104_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_007907.1\|WP_011460589.1\|3148007_3150065_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NC_007907.1\|WP_011460590.1\|3150222_3150567_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_007907.1\|WP_005817554.1\|3136833_3137097_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_007907.1\|WP_041272867.1\|3154838_3155579_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187889
NC_007907.1\|WP_041272465.1\|3155863_3156409_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_007907.1\|WP_005811940.1\|3134237_3134456_+\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_005817555.1\|3137197_3138193_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	unknown	unknown	gnl\|CDD\|212155
NC_007907.1\|WP_041272463.1\|3144939_3145176_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_007907.1\|WP_005810571.1\|3157421_3157595_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011460582.1\|3138261_3138771_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	gnl\|CDD\|225288	COG2433, COG2433, Uncharacterized conserved protein [Function unknown].	0.0011602
NC_007907.1\|WP_015944888.1\|3150556_3150856_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	1.43815e-11
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	3.54523e-30
NC_007907.1\|WP_035214020.1\|3133885_3134104_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.96845e-17
NC_007907.1\|WP_011460590.1\|3150222_3150567_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.72179e-26
NC_007907.1\|WP_005817554.1\|3136833_3137097_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.63322e-33
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.60285e-76
NC_007907.1\|WP_041272465.1\|3155863_3156409_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.26047e-35
NC_007907.1\|WP_005817555.1\|3137197_3138193_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	0
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	gnl\|CDD\|212155	cd11586, VbhA_like, VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.	0.000484945
NC_007907.1\|WP_041272867.1\|3154838_3155579_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.26485e-33
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.31172e-21
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.52912e-36
NC_007907.1\|WP_011460582.1\|3138261_3138771_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.90839e-77

>NC_007907.1|WP_041272463.1|3144939_3145176_-|hypothetical-protein
MDKLDIILQRLDSLDRIEAEIKALKADHRETYKKLSKIDEISVMQGLTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_041272462.1|3144510_3144690_-|antitoxin-VbhA-family-protein
MTKSDAWDYALGIIKVDGLEPSEEFLELVEKEKRGEITDQDILKHLDQKYKMKGKKQDA
>NC_007907.1|WP_011460586.1|3143882_3144518_-|Fic-family-protein
MRDPYVYPNTDVLINRHDVRDEADLAEMEAEYTSIRLKQITETPLPGNYDFQHFCEFHKWVFQDIYEWAGVPRTIDIEKPEPALGGISIEYSPVDEIEPTAKKVLDTMRDAAWDKFSLDEKALKFSKYMAELWKIHCFREGNTRTVVTFCCQFAESRGFSVDRTLFQKHSAYVRTSLVAASAYFSDLGDRAQPEYLIRIVRDSIERGRRKA
>NC_007907.1|WP_011460584.1|3141896_3142151_-|hypothetical-protein
MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSETQAISKKVDMTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_041272460.1|3138793_3141211_-|CRISPR-associated-helicase/endonuclease-Cas3
MSPLIPFAQCIARPDEQGRTHLLKDHLLGVKEAVEQRLKSECCPYCHDRIFIRLAGLAGVCHDMAKAHRKWQSYIRGQDKGGPNHAPEGAFLFSYLGFHLLQQESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEKMDLSGITKFMEQIYPELCQVPITAEALDQWIDRLYDVLQEAYDGLDLGYSPDYGKAMAQLTFWRELTTALIAGDRFHVAPMERVGFSQEDHIRHDRAMDEFCRNNGEQVMADIRSQAQRQILNQLARDPRRRIYTLEMPTGYGKTITALKIAAWLGREQGYERIIYVAPYLSILEQTSGVMEKAMGASVLEHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTLRRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQPGCLAVNPVQQIERYQVEQKGEMDERGVADYLLKRSEILAADERGLSQAAILNTIADAYLVYKQLAAKVEPSQLKLLHGMMIPLHKRVEIEKIKHFQAENKREGQYVVSTQIIEAGVDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSELQKLTDKLLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQFKPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRLSFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAVEGFDAII
>NC_007907.1|WP_011460582.1|3138261_3138771_-|CRISPR-associated-protein-Cas4
MEHPEFNLTGTHIWYYYCCPREVWLMLRQVNPDEDDSNLDLGRFIHEMSYARDKNKEISLGNIRLDIVRQDKEGLVIGEVKKSSKYAKSARMQLGFYLLELKERGIEAKGELFFPKERKKEEVALTEDMEKELLETMEKIRGIALLERPPQPQKIHFCRNCAYKEFCWA
>NC_007907.1|WP_005817555.1|3137197_3138193_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFSNGQLRRKDDTIFFVNEEGDQKYIPVEDTSELMVFGEVDINKRFLEFCTQKEIIIHYFNNYGYYSGTFYPREHYNSGYMILKQAEAYLNEERRLLLARQFVNGAFLNIRQVLKYYANRGKEVGPRLTEIEKLSEGIGAAGTIPELMAFEGNIREHYYKAFDAIHGHPEFVFEGRSKRPPKNAMNTLISFGNSIVYSTVLSEIYKTHLDPRIGYLHTTNFRRFSLNLDVAEIFKPILVDRVIFTLIGKKMIKKSDFKKESGGLMLKENGRRVFVEELENRLKTTINHRDIGTPVSYRRLLRLELYKLEKHLMGEKDYEPFVSQW
>NC_007907.1|WP_005817554.1|3136833_3137097_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDMGEKRVAKALKRCRKYLNWVQNSVFEGEISESNLAKLKMELDRIIVPEEDSVIIYTLRTTRYSEREIMGLRKGGQNLII
>NC_007907.1|WP_005811940.1|3134237_3134456_+|hypothetical-protein
MDTAKAKRALKKLAKQKGISKKEIYREIEIAIAEAMTSPEPQAQAFWKSIPHRRGQPTPEDIIAYIADRVKE
>NC_007907.1|WP_035214020.1|3133885_3134104_-|helix-turn-helix-transcriptional-regulator
MEYGTIRIKLNELIEKEGISKNKLSHRAEMQRSQINNYCNNSISRLDIDVLARICTVLNCEIGDLLEFVPPK
>NC_007907.1|WP_011460587.1|3146325_3147021_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILGIEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEEYTEQLLDFLTGERAVYTTYLGTAYALTKPILYRVYPEVSYPVAEGKEIEMRTVVPTALIREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDLRVAQFGEDLVCLV
>NC_007907.1|WP_041272464.1|3147064_3148015_-|type-I-CRISPR-associated-protein-Cas7
MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMDSTAEGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFDLTRLLAAVAEKQDKIAQCRIWTHPGVTISGDIAPWLQPLW
>NC_007907.1|WP_011460589.1|3148007_3150065_-|hypothetical-protein
MLAEAIIRIGRPIKDSDMPCRDKIRLLTDVSSENCKNFFRHVFLLEITEKDIGFQPMEVGDRETKEKKETFQVNPVRNVAFPIFYPNGGNPLHAQGIYPLPCYLVYDPHIKAMKDEEAFKKEFLLPRLGKTLGYRDRTEAERAALADRIAELLAARGAELITEDKQLGVMMIFDQELPMFHKYQEKRENELSMWIAESPLTPGAHLHLDGEEVLKRIGRAKFYEAAELGKEKNALSTFTNRKTDEVVSIYNKSWLWLSPTWESPRSIYWNDDEWTKGIKVDEESYAAYLYGVQFLKEIQVPISSAVLKEMFAPITSVEAKKMMSVESFESIYGIPMVLPLTDGDSRQLFAKYQKLLKKRDEKQSDGDLQLKVLAGIDRIVPEMGDEHRLTILYYSGDLSRGNMHIRAMIEDVIPSVAGQVEKILYRLSSRETGKIQEAFGVREQPIYRTQNLPALLANVYGPGYVWESLRSVFHKEPLRWERLHMATARKLNELANKEDRGQMLQELVFHYSFLYFLKEYEEKILHKQGGVGTLADWDEFKALYAQGKLELSHLVKAEQLGFAAGLLLKQFSNSYYQKTGKDFLKQRVMKFGSKLTPAMIWKNGLLRCEELAQQWSMKLGSNFRPMLAQTLLGFLEKEQELIPEKDTFMTAFWSGYLLYKSDKNNDGGTGSDPEVKEEDGGRDNE
>NC_007907.1|WP_011460590.1|3150222_3150567_-|DUF86-domain-containing-protein
MTDKDRIILHKIINYAQEIIGYVDNMDYKQFVGDRKTIAACAFCIGQIGELAKDISAETQELNPEIAWKSIRGMRNKIVHDYENVNLGVLWGTIGESLPELVQQINQLLGEKRT
>NC_007907.1|WP_015944888.1|3150556_3150856_-|nucleotidyltransferase-domain-containing-protein
MSMDVAEIKDKLFPIFEAAPIYQAILFGSFAQNKATDSSDVDIVIDSRGELLNIKFYGVLEDITQTLGRKVDLFEISEIRPGSPIDHEIRQQGVLLYDR
>NC_007907.1|WP_041272867.1|3154838_3155579_-|CRISPR-associated-endoribonuclease-Cas6
MNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKGYSDGNRAFKLFCFSLIQGVYQMDRVKKRIAFEGELKLTVSSPLQDFCQSLVNVLLTKGVMRLGAQELEIDRISAGQYEVREHKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETDYSRLFNENLRKKYRALYGSEGPEGEVEIRPLGIQRMRIVNYKNTVIKGYAGKLLLSGPKELLQLAVDGGIGSKNSQGFGCVEIING
>NC_007907.1|WP_041272465.1|3155863_3156409_-|GNAT-family-N-acetyltransferase
MIYFETPRLIFRDWKEQDLREFRMMNKDSRVMRYFPETLTEQETDSLYEMIRDELSLGYGAYAVETKDNHEFIGFIGFHRATFAAAFTPCVEIAWRLNYAAWGKGYATEGAKACLDYGFNTLGLDEVYSFTAKANLPSENVMKKLGMKKVMEFKHPHVAENSPLAEHVLYMCQLKSREEDG
>NC_007907.1|WP_158303418.1|3156521_3156662_-|hypothetical-protein
MNKKVLALISKMPETGFVPKRDNVVAFGDMVSLQKEEMYWWEDFEL
>NC_007907.1|WP_173361720.1|3156654_3156822_-|hypothetical-protein
MTDYRKMYFQLAAKVADVMDILLKAQREGEKEFMDGEPFPEGKVMVIPDEGCECE
>NC_007907.1|WP_005810571.1|3157421_3157595_-|hypothetical-protein
MASNSRTFSEYVLAYAAKGAGEIDHIYYFTGEYNGLENLSAEELTEETQGSVLLWSK

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Crispr_ID: NC_007907_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_5

3151280-3154431

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CRISPRCasFinder
CCTCATAGGTAAGCTAACAAC	CRT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	PILER-CR

47 spacers

cas8b1,cas7b,cas5,cas3,cas6

The CRISPR arrays of NC_007907_5

>merge|NC_007907|5|3151280-3154431|CRISPRCasFinder,CRT,PILER-CR
GAAAAGGTCACTTATAGGTAAGCTAATAACGATAATTTGGGTTTTCTGAGCGCAAGATCACTGTTGAGCGTTTCAATCCCTCATAGGTAAGCTAACAACTGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATGGTTTCAATTCCTCATAGGTAAGCTAACAACTTATGAGATCCCTGGAACGGGACTCAAGCTCATCTTGTTTCAATTCCTCATAGGTAAGCTAACAACTGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCATGTTTCAATTCCTCATAGGTAAGCTAACAACCGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGCGTTTCAATTCCTCATAGGTAAGCTAACAACCTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCTGTTTCAATTCCTCATAGGTAAGCTAACAACTGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCTGTTTCAATTCCTCATAGGTAAGCTAACAACCCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTGGTTTCAATTCCTCATAGGTAAGCTAACAACGTGTTGAAAAAGCAGTATTGGACAGGTGGGAGATGTTTCAATTCCTCATAGGTAAGCTAACAACTAGGATGTCCTGAATACGAAGAGCTGCTGATTCATTGTTTCAATTCCTCATAGGTAAGCTAACAACATTCAGAGCATCAGAGTAGAGCGGCTATGGGACATAACCAGTTTCAATTCCTCATAGGTAAGCTAACAACAAAAGGTCCAGCTCATTCGGCAGCTCAGAAAAGATCTGTTTCAATTCCTCATAGGTAAGCTAACAACTGGTCACGCCAGGGATAACCTCCCCGCTGTCTTGGTGTTTCAATTCCTCATAGGTAAGCTAACAACTAACCCTGATTTAGACTTAGTAGCGGCCCTGAGCGGTTTCAATTCCTCATAGGTAAGCTAACAACAACGTTTGAGGAAATAGAGCTAATGCAATTCACAGGACTGTTTCAATTCCTCATAGGTAAGCTAACAACGCAAAAGGACAAGCTAAATTTCGTCTATGTTACCTGTTTCAATTCCTCATAGGTAAGCTAACAACTCAATGCTGGTGATGTACCTTGCGGCATGAGGATAGTTTCAATTCCTCATAGGTAAGCTAACAACGTGGTGGGAAGAGGAATAGACGAATTGAGGTGACAGGTTTCAATTCCTCATAGGTAAGCTAACAACCAAGCCTATTTATGAAACACTGGATCCCCGGGCCGAGTTTCAATTCCTCATAGGTAAGCTAACAACGCAATATCCTTTGTGTTTGCATTGGCATCCTCGAAGTTTCAATTCCTCATAGGTAAGCTAACAACACACCGGCACGGACAGAATGAAGCGAGCCGTTCTCAGTTTCAATTCCTCATAGGTAAGCTAACAACGTGCGGTACTGTCATATTGTTCAGCTCCTCTTTAATAGTTTCAATTCCTCATAGGTAAGCTAACAACCGACTCCATTGATAGGACCATGTACAGCTTATATGTGTTTCAATTCCTCATAGGTAAGCTAACAACTCCAGCCGAGGAGCCGTTTAAGGTGACTTTTCATAGGTTTCAATTCCTCATAGGTAAGCTAACAACGGGGAGCAGTTGGCGCTGTGTCAGAGGTATCTAACATGTTTCAATTCCTCATAGGTAAGCTAACAACCCTCTGCGGTCCCGTGGATGGGAGTCCATCCGGAGTTGTTTCAATTCCTCATAGGTAAGCTAACAACTAGGCATTCGCCCTACTTGCGGATCTCTCCCATGGGGTTTCAATTCCTCATAGGTAAGCTAACAACATGGGGGCTTGCCTTATCACTTCCGGGTAGTGACCTGTTTCAATTCCTCATAGGTAAGCTAACAACTTTTGGCCACATCTGCAGCGGCCACTTGAGGATAGAGTTTCAATTCCTCATAGGTAAGCTAACAACATTGCCCAGGTATCTCAATGGGAAGAAATGGTGGCTGTTTCAATTCCTCATAGGTAAGCTAACAACAATTGCTTGCTTCGCTGAGGTGTTGTTAAATTGGAGTTTCAATTCCTCATAGGTAAGCTAACAACCAAAACAGTATGCGGTATGTATCTATGTCCACGGAAGTTTCAATTCCTCATAGGTAAGCTAACAACGCGATGGTCAATTGGAGATAATAAGGGGCAGAAATAGGTTTCAATTCCTCATAGGTAAGCTAACAACCAAGCTTAACAGCGAAAGTGAAGTAGAGGATCCTGAGTTTCAATCCCTCATAGGTAAGCTAACAACCTTTGGTTGACTTAGGTTATGACGTGTAACCCTTGGTAGTTTCAATCCCTCATAGGTAAGCTAACAACCCGAAGCATTTACATAAGGAGGCGTTACCTTGGCAAGGTTTCAATCCCTCATAGGTAAGCTAACAACGTGGCTTACCGAAGAAAAGACCGGGCTTGGTGTGAGGTTTCAATCCCTCATAGGTAAGCTAACAACCATTCACCCAGCCCTTTCAGGATGTCTAGGTTTCGGAGTTTCAATCCCTCATAGGTAAGCTAACAACGGTCTGAGATAGGTGTTGTCCCCAGTTTGTCCCCAAGTTTCAATCCCTCATAGGTAAGCTAACAACCTATAGAAAGCCGTACTACTTGGACATTCCATTCCACTGTTTCAATCCCTCATAGGTAAGCTAACAACATTATTACAATGGATATATTTTTCTGTATTATTTTTGTTTCAATCCCTCATAGGTAAGCTAACAACACTTCTGATACGAAGAATTTTCCATCCTTGAGATTTGTTTCAATCCCTCATAGGTAAGCTAACAACTATTACACTCTCTTTTCTAATAAAACTCTTATTAATTGTTTCAATCCCTCATAGGTAAGCTAACAACATTGTACAGTTCTAGATCATTCTGATTATCAAGATGTTTCAATCCCTCATAGGTAAGCTAACAACTTATATCCCATGTATATTCCATCGGAAAAAACATTGGTTTCAATCCCTCATAGGTAAGCTAACAACACAGATAGAATTGTTTGACCTATATAGACCTTATCGTGTTTCAATCCCTCATAGGTAAGCTAACAACCATATTTGTTTACTAGCAAAGAATGAAAATGGAAGAGTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|5|5|3151280-3154431|CRISPRCasFinder
GAAAAGGTCACTTATAGGTAAGCTAATAAC	GATAATTTGGGTTTTCTGAGCGCAAGATCACTGTTGAGC
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTATGAGATCCCTGGAACGGGACTCAAGCTCATCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATTCAGAGCATCAGAGTAGAGCGGCTATGGGACATAACCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAAAGGTCCAGCTCATTCGGCAGCTCAGAAAAGATCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGGTCACGCCAGGGATAACCTCCCCGCTGTCTTGGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAACCCTGATTTAGACTTAGTAGCGGCCCTGAGCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AACGTTTGAGGAAATAGAGCTAATGCAATTCACAGGACT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCAAAAGGACAAGCTAAATTTCGTCTATGTTACCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCAATGCTGGTGATGTACCTTGCGGCATGAGGATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGGTGGGAAGAGGAATAGACGAATTGAGGTGACAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAGCCTATTTATGAAACACTGGATCCCCGGGCCGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCAATATCCTTTGTGTTTGCATTGGCATCCTCGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACACCGGCACGGACAGAATGAAGCGAGCCGTTCTCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGCGGTACTGTCATATTGTTCAGCTCCTCTTTAATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGACTCCATTGATAGGACCATGTACAGCTTATATGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCAGCCGAGGAGCCGTTTAAGGTGACTTTTCATAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGGAGCAGTTGGCGCTGTGTCAGAGGTATCTAACAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCTCTGCGGTCCCGTGGATGGGAGTCCATCCGGAGTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGCATTCGCCCTACTTGCGGATCTCTCCCATGGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGGGGGCTTGCCTTATCACTTCCGGGTAGTGACCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTTTGGCCACATCTGCAGCGGCCACTTGAGGATAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATTGCCCAGGTATCTCAATGGGAAGAAATGGTGGCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AATTGCTTGCTTCGCTGAGGTGTTGTTAAATTGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAAACAGTATGCGGTATGTATCTATGTCCACGGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCGATGGTCAATTGGAGATAATAAGGGGCAGAAATAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAGCTTAACAGCGAAAGTGAAGTAGAGGATCCTGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTTTGGTTGACTTAGGTTATGACGTGTAACCCTTGGTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCGAAGCATTTACATAAGGAGGCGTTACCTTGGCAAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GTGGCTTACCGAAGAAAAGACCGGGCTTGGTGTGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CATTCACCCAGCCCTTTCAGGATGTCTAGGTTTCGGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGTCTGAGATAGGTGTTGTCCCCAGTTTGTCCCCAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTATAGAAAGCCGTACTACTTGGACATTCCATTCCACT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTATTACAATGGATATATTTTTCTGTATTATTTTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACTTCTGATACGAAGAATTTTCCATCCTTGAGATTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATTACACTCTCTTTTCTAATAAAACTCTTATTAATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTGTACAGTTCTAGATCATTCTGATTATCAAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTATATCCCATGTATATTCCATCGGAAAAAACATTG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACAGATAGAATTGTTTGACCTATATAGACCTTATCGT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CATATTTGTTTACTAGCAAAGAATGAAAATGGAAGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC

>NC_007907|5|4|3151289-3154431|CRT
ACTTATAGGTAAGCTAATAAC	GATAATTTGGGTTTTCTGAGCGCAAGATCACTGTTGAGCGTTTCAATC
CCTCATAGGTAAGCTAACAAC	TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATGGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TTATGAGATCCCTGGAACGGGACTCAAGCTCATCTTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCATGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGCGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTGGTTTCAATT
CCTCATAGGTAAGCTAACAAC	GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGATGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	ATTCAGAGCATCAGAGTAGAGCGGCTATGGGACATAACCAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	AAAAGGTCCAGCTCATTCGGCAGCTCAGAAAAGATCTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TGGTCACGCCAGGGATAACCTCCCCGCTGTCTTGGTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TAACCCTGATTTAGACTTAGTAGCGGCCCTGAGCGGTTTCAATT
CCTCATAGGTAAGCTAACAAC	AACGTTTGAGGAAATAGAGCTAATGCAATTCACAGGACTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	GCAAAAGGACAAGCTAAATTTCGTCTATGTTACCTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TCAATGCTGGTGATGTACCTTGCGGCATGAGGATAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	GTGGTGGGAAGAGGAATAGACGAATTGAGGTGACAGGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CAAGCCTATTTATGAAACACTGGATCCCCGGGCCGAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	GCAATATCCTTTGTGTTTGCATTGGCATCCTCGAAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	ACACCGGCACGGACAGAATGAAGCGAGCCGTTCTCAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	GTGCGGTACTGTCATATTGTTCAGCTCCTCTTTAATAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CGACTCCATTGATAGGACCATGTACAGCTTATATGTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TCCAGCCGAGGAGCCGTTTAAGGTGACTTTTCATAGGTTTCAATT
CCTCATAGGTAAGCTAACAAC	GGGGAGCAGTTGGCGCTGTGTCAGAGGTATCTAACATGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CCTCTGCGGTCCCGTGGATGGGAGTCCATCCGGAGTTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TAGGCATTCGCCCTACTTGCGGATCTCTCCCATGGGGTTTCAATT
CCTCATAGGTAAGCTAACAAC	ATGGGGGCTTGCCTTATCACTTCCGGGTAGTGACCTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	TTTTGGCCACATCTGCAGCGGCCACTTGAGGATAGAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	ATTGCCCAGGTATCTCAATGGGAAGAAATGGTGGCTGTTTCAATT
CCTCATAGGTAAGCTAACAAC	AATTGCTTGCTTCGCTGAGGTGTTGTTAAATTGGAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CAAAACAGTATGCGGTATGTATCTATGTCCACGGAAGTTTCAATT
CCTCATAGGTAAGCTAACAAC	GCGATGGTCAATTGGAGATAATAAGGGGCAGAAATAGGTTTCAATT
CCTCATAGGTAAGCTAACAAC	CAAGCTTAACAGCGAAAGTGAAGTAGAGGATCCTGAGTTTCAATC
CCTCATAGGTAAGCTAACAAC	CTTTGGTTGACTTAGGTTATGACGTGTAACCCTTGGTAGTTTCAATC
CCTCATAGGTAAGCTAACAAC	CCGAAGCATTTACATAAGGAGGCGTTACCTTGGCAAGGTTTCAATC
CCTCATAGGTAAGCTAACAAC	GTGGCTTACCGAAGAAAAGACCGGGCTTGGTGTGAGGTTTCAATC
CCTCATAGGTAAGCTAACAAC	CATTCACCCAGCCCTTTCAGGATGTCTAGGTTTCGGAGTTTCAATC
CCTCATAGGTAAGCTAACAAC	GGTCTGAGATAGGTGTTGTCCCCAGTTTGTCCCCAAGTTTCAATC
CCTCATAGGTAAGCTAACAAC	CTATAGAAAGCCGTACTACTTGGACATTCCATTCCACTGTTTCAATC
CCTCATAGGTAAGCTAACAAC	ATTATTACAATGGATATATTTTTCTGTATTATTTTTGTTTCAATC
CCTCATAGGTAAGCTAACAAC	ACTTCTGATACGAAGAATTTTCCATCCTTGAGATTTGTTTCAATC
CCTCATAGGTAAGCTAACAAC	TATTACACTCTCTTTTCTAATAAAACTCTTATTAATTGTTTCAATC
CCTCATAGGTAAGCTAACAAC	ATTGTACAGTTCTAGATCATTCTGATTATCAAGATGTTTCAATC
CCTCATAGGTAAGCTAACAAC	TTATATCCCATGTATATTCCATCGGAAAAAACATTGGTTTCAATC
CCTCATAGGTAAGCTAACAAC	ACAGATAGAATTGTTTGACCTATATAGACCTTATCGTGTTTCAATC
CCTCATAGGTAAGCTAACAAC	CATATTTGTTTACTAGCAAAGAATGAAAATGGAAGAGTTTCAATC
CCTCATAGGTAAGCTAACAAC

>NC_007907|5|4|3151349-3154431|PILER-CR
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TGGAGAGGTGTTATAATTTATCGGGGAACCCGTAAATG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTATGAGATCCCTGGAACGGGACTCAAGCTCATCTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGTTCCCCCACTTGTTCTACATGTGTCGCAAGATCAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGAAGGCACCTTTGGCACAGCCTCGACAGGACGAGC
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CTCTTCGAGAGAGAAGAAGAAGGCGATATCCTTCTCCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGCTTCCTCAAAGACGATCTCTTTGGTGAGCAGCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCTATTGCAGTCGGTGTTAGCCATTTAGTATTACCTG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGTTGAAAAAGCAGTATTGGACAGGTGGGAGAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGATGTCCTGAATACGAAGAGCTGCTGATTCATT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATTCAGAGCATCAGAGTAGAGCGGCTATGGGACATAACCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AAAAGGTCCAGCTCATTCGGCAGCTCAGAAAAGATCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TGGTCACGCCAGGGATAACCTCCCCGCTGTCTTGGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAACCCTGATTTAGACTTAGTAGCGGCCCTGAGCG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AACGTTTGAGGAAATAGAGCTAATGCAATTCACAGGACT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCAAAAGGACAAGCTAAATTTCGTCTATGTTACCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCAATGCTGGTGATGTACCTTGCGGCATGAGGATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGGTGGGAAGAGGAATAGACGAATTGAGGTGACAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAGCCTATTTATGAAACACTGGATCCCCGGGCCGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCAATATCCTTTGTGTTTGCATTGGCATCCTCGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ACACCGGCACGGACAGAATGAAGCGAGCCGTTCTCA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GTGCGGTACTGTCATATTGTTCAGCTCCTCTTTAATA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CGACTCCATTGATAGGACCATGTACAGCTTATATGT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TCCAGCCGAGGAGCCGTTTAAGGTGACTTTTCATAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GGGGAGCAGTTGGCGCTGTGTCAGAGGTATCTAACAT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CCTCTGCGGTCCCGTGGATGGGAGTCCATCCGGAGTT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TAGGCATTCGCCCTACTTGCGGATCTCTCCCATGGG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATGGGGGCTTGCCTTATCACTTCCGGGTAGTGACCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	TTTTGGCCACATCTGCAGCGGCCACTTGAGGATAGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	ATTGCCCAGGTATCTCAATGGGAAGAAATGGTGGCT
GTTTCAATTCCTCATAGGTAAGCTAACAAC	AATTGCTTGCTTCGCTGAGGTGTTGTTAAATTGGA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAAACAGTATGCGGTATGTATCTATGTCCACGGAA
GTTTCAATTCCTCATAGGTAAGCTAACAAC	GCGATGGTCAATTGGAGATAATAAGGGGCAGAAATAG
GTTTCAATTCCTCATAGGTAAGCTAACAAC	CAAGCTTAACAGCGAAAGTGAAGTAGAGGATCCTGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTTTGGTTGACTTAGGTTATGACGTGTAACCCTTGGTA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CCGAAGCATTTACATAAGGAGGCGTTACCTTGGCAAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GTGGCTTACCGAAGAAAAGACCGGGCTTGGTGTGAG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CATTCACCCAGCCCTTTCAGGATGTCTAGGTTTCGGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	GGTCTGAGATAGGTGTTGTCCCCAGTTTGTCCCCAA
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CTATAGAAAGCCGTACTACTTGGACATTCCATTCCACT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTATTACAATGGATATATTTTTCTGTATTATTTTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACTTCTGATACGAAGAATTTTCCATCCTTGAGATTT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TATTACACTCTCTTTTCTAATAAAACTCTTATTAATT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ATTGTACAGTTCTAGATCATTCTGATTATCAAGAT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	TTATATCCCATGTATATTCCATCGGAAAAAACATTG
GTTTCAATCCCTCATAGGTAAGCTAACAAC	ACAGATAGAATTGTTTGACCTATATAGACCTTATCGT
GTTTCAATCCCTCATAGGTAAGCTAACAAC	CATATTTGTTTACTAGCAAAGAATGAAAATGGAAGA
GTTTCAATCCCTCATAGGTAAGCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225288
NC_007907.1\|WP_173361720.1\|3156654_3156822_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_158303418.1\|3156521_3156662_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_015944888.1\|3150556_3150856_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	unknown	unknown	gnl\|CDD\|212155
NC_007907.1\|WP_011460589.1\|3148007_3150065_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NC_007907.1\|WP_011460590.1\|3150222_3150567_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_007907.1\|WP_041272463.1\|3144939_3145176_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_007907.1\|WP_011460596.1\|3157751_3158246_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_007907.1\|WP_041272465.1\|3155863_3156409_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_007907.1\|WP_011460597.1\|3158478_3159375_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_007907.1\|WP_011460600.1\|3162124_3163000_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379638
NC_007907.1\|WP_005810582.1\|3161268_3161931_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225095
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_007907.1\|WP_041272867.1\|3154838_3155579_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187889
NC_007907.1\|WP_005810571.1\|3157421_3157595_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_035213780.1\|3160215_3161130_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_011460584.1\|3141896_3142151_-\|hypothetical-protein	gnl\|CDD\|225288	COG2433, COG2433, Uncharacterized conserved protein [Function unknown].	0.0011602
NC_007907.1\|WP_011460600.1\|3162124_3163000_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|379638	pfam14526, Cass2, Integron-associated effector binding protein. This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.	3.02205e-36
NC_007907.1\|WP_015944888.1\|3150556_3150856_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	1.43815e-11
NC_007907.1\|WP_041272462.1\|3144510_3144690_-\|antitoxin-VbhA-family-protein	gnl\|CDD\|212155	cd11586, VbhA_like, VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.	0.000484945
NC_007907.1\|WP_011460590.1\|3150222_3150567_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.72179e-26
NC_007907.1\|WP_041272464.1\|3147064_3148015_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.60285e-76
NC_007907.1\|WP_011460596.1\|3157751_3158246_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.93302e-37
NC_007907.1\|WP_041272465.1\|3155863_3156409_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.26047e-35
NC_007907.1\|WP_011460597.1\|3158478_3159375_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.08994e-31
NC_007907.1\|WP_011460586.1\|3143882_3144518_-\|Fic-family-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	3.54523e-30
NC_007907.1\|WP_041272460.1\|3138793_3141211_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.52912e-36
NC_007907.1\|WP_011460587.1\|3146325_3147021_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.31172e-21
NC_007907.1\|WP_041272867.1\|3154838_3155579_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.26485e-33
NC_007907.1\|WP_005810582.1\|3161268_3161931_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.03077e-64
NC_007907.1\|WP_035213780.1\|3160215_3161130_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.54023e-86

>NC_007907.1|WP_015944888.1|3150556_3150856_-|nucleotidyltransferase-domain-containing-protein
MSMDVAEIKDKLFPIFEAAPIYQAILFGSFAQNKATDSSDVDIVIDSRGELLNIKFYGVLEDITQTLGRKVDLFEISEIRPGSPIDHEIRQQGVLLYDR
>NC_007907.1|WP_011460590.1|3150222_3150567_-|DUF86-domain-containing-protein
MTDKDRIILHKIINYAQEIIGYVDNMDYKQFVGDRKTIAACAFCIGQIGELAKDISAETQELNPEIAWKSIRGMRNKIVHDYENVNLGVLWGTIGESLPELVQQINQLLGEKRT
>NC_007907.1|WP_011460589.1|3148007_3150065_-|hypothetical-protein
MLAEAIIRIGRPIKDSDMPCRDKIRLLTDVSSENCKNFFRHVFLLEITEKDIGFQPMEVGDRETKEKKETFQVNPVRNVAFPIFYPNGGNPLHAQGIYPLPCYLVYDPHIKAMKDEEAFKKEFLLPRLGKTLGYRDRTEAERAALADRIAELLAARGAELITEDKQLGVMMIFDQELPMFHKYQEKRENELSMWIAESPLTPGAHLHLDGEEVLKRIGRAKFYEAAELGKEKNALSTFTNRKTDEVVSIYNKSWLWLSPTWESPRSIYWNDDEWTKGIKVDEESYAAYLYGVQFLKEIQVPISSAVLKEMFAPITSVEAKKMMSVESFESIYGIPMVLPLTDGDSRQLFAKYQKLLKKRDEKQSDGDLQLKVLAGIDRIVPEMGDEHRLTILYYSGDLSRGNMHIRAMIEDVIPSVAGQVEKILYRLSSRETGKIQEAFGVREQPIYRTQNLPALLANVYGPGYVWESLRSVFHKEPLRWERLHMATARKLNELANKEDRGQMLQELVFHYSFLYFLKEYEEKILHKQGGVGTLADWDEFKALYAQGKLELSHLVKAEQLGFAAGLLLKQFSNSYYQKTGKDFLKQRVMKFGSKLTPAMIWKNGLLRCEELAQQWSMKLGSNFRPMLAQTLLGFLEKEQELIPEKDTFMTAFWSGYLLYKSDKNNDGGTGSDPEVKEEDGGRDNE
>NC_007907.1|WP_041272464.1|3147064_3148015_-|type-I-CRISPR-associated-protein-Cas7
MNSGEILFVKSVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIALEQDGGKDQKNHIFVQEKVNDKGKLLGRGSLAEGIAKSVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSMDSTAEGEGKTQGTIWTSYTVPFAVFAMPAVINAKAAEHSGMTAEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPDTTAWKAAGKLPSSLQDVSFDLTRLLAAVAEKQDKIAQCRIWTHPGVTISGDIAPWLQPLW
>NC_007907.1|WP_011460587.1|3146325_3147021_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQLTYPFITPTAAKGLVGAILGIEDFVTTDRVGIELLRPVRTVAQQMSMLGKDPGSTFNRPTTIELLVNPGYRIYYTGEEYTEQLLDFLTGERAVYTTYLGTAYALTKPILYRVYPEVSYPVAEGKEIEMRTVVPTALIREIVLKADRYYCRAGGYLYEYKGQRTFEKSVDFLYEKDGKPIAFIPKSDGPDSPLDLRVAQFGEDLVCLV
>NC_007907.1|WP_041272463.1|3144939_3145176_-|hypothetical-protein
MDKLDIILQRLDSLDRIEAEIKALKADHRETYKKLSKIDEISVMQGLTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_041272462.1|3144510_3144690_-|antitoxin-VbhA-family-protein
MTKSDAWDYALGIIKVDGLEPSEEFLELVEKEKRGEITDQDILKHLDQKYKMKGKKQDA
>NC_007907.1|WP_011460586.1|3143882_3144518_-|Fic-family-protein
MRDPYVYPNTDVLINRHDVRDEADLAEMEAEYTSIRLKQITETPLPGNYDFQHFCEFHKWVFQDIYEWAGVPRTIDIEKPEPALGGISIEYSPVDEIEPTAKKVLDTMRDAAWDKFSLDEKALKFSKYMAELWKIHCFREGNTRTVVTFCCQFAESRGFSVDRTLFQKHSAYVRTSLVAASAYFSDLGDRAQPEYLIRIVRDSIERGRRKA
>NC_007907.1|WP_011460584.1|3141896_3142151_-|hypothetical-protein
MDDKLDLILDRLTAMDRGLKAEISSLKSEIGSLKPEIGSLKSETQAISKKVDMTWRAIQELRDDKTELNELRKRIEILESKLAM
>NC_007907.1|WP_041272460.1|3138793_3141211_-|CRISPR-associated-helicase/endonuclease-Cas3
MSPLIPFAQCIARPDEQGRTHLLKDHLLGVKEAVEQRLKSECCPYCHDRIFIRLAGLAGVCHDMAKAHRKWQSYIRGQDKGGPNHAPEGAFLFSYLGFHLLQQESKWPSYAVFWLWLTRDIADHHGALKHLDEKHRIGAGTWEKMDLSGITKFMEQIYPELCQVPITAEALDQWIDRLYDVLQEAYDGLDLGYSPDYGKAMAQLTFWRELTTALIAGDRFHVAPMERVGFSQEDHIRHDRAMDEFCRNNGEQVMADIRSQAQRQILNQLARDPRRRIYTLEMPTGYGKTITALKIAAWLGREQGYERIIYVAPYLSILEQTSGVMEKAMGASVLEHHSLAVLEEKQKDEDREEEGQFHSGQLMMEAWANPVICTSFQQWSKALFPGKAQDTLRRAYLHNSVVIIDEPQIFAPESWNVFLCGLESVAQLYNLRIFFLSATMPPFDYGLSEQPGCLAVNPVQQIERYQVEQKGEMDERGVADYLLKRSEILAADERGLSQAAILNTIADAYLVYKQLAAKVEPSQLKLLHGMMIPLHKRVEIEKIKHFQAENKREGQYVVSTQIIEAGVDLSFDHIMRALPILPSLIQAAGRVNRNGSGRRGILTLMTFLRGGEKNTRGFIYPSELQKLTDKLLQKQDVWLESELLELIKEYYRRMFARNSYEAGKQAIIDAYEGNWPLLGQQFKPFGEDYFKLPVFVPWQTEEEDQAYFPQRFVELQERLGLYEAEDIYACYEDRDYYSRLSFKGRKEFMILLNHYVVNVPAKLAFSLVGKELYLKNRIPCLWSGNDYDPVAGLAKRAVEGFDAII
>NC_007907.1|WP_041272867.1|3154838_3155579_-|CRISPR-associated-endoribonuclease-Cas6
MNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKGYSDGNRAFKLFCFSLIQGVYQMDRVKKRIAFEGELKLTVSSPLQDFCQSLVNVLLTKGVMRLGAQELEIDRISAGQYEVREHKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETDYSRLFNENLRKKYRALYGSEGPEGEVEIRPLGIQRMRIVNYKNTVIKGYAGKLLLSGPKELLQLAVDGGIGSKNSQGFGCVEIING
>NC_007907.1|WP_041272465.1|3155863_3156409_-|GNAT-family-N-acetyltransferase
MIYFETPRLIFRDWKEQDLREFRMMNKDSRVMRYFPETLTEQETDSLYEMIRDELSLGYGAYAVETKDNHEFIGFIGFHRATFAAAFTPCVEIAWRLNYAAWGKGYATEGAKACLDYGFNTLGLDEVYSFTAKANLPSENVMKKLGMKKVMEFKHPHVAENSPLAEHVLYMCQLKSREEDG
>NC_007907.1|WP_158303418.1|3156521_3156662_-|hypothetical-protein
MNKKVLALISKMPETGFVPKRDNVVAFGDMVSLQKEEMYWWEDFEL
>NC_007907.1|WP_173361720.1|3156654_3156822_-|hypothetical-protein
MTDYRKMYFQLAAKVADVMDILLKAQREGEKEFMDGEPFPEGKVMVIPDEGCECE
>NC_007907.1|WP_005810571.1|3157421_3157595_-|hypothetical-protein
MASNSRTFSEYVLAYAAKGAGEIDHIYYFTGEYNGLENLSAEELTEETQGSVLLWSK
>NC_007907.1|WP_011460596.1|3157751_3158246_-|HAMP-domain-containing-histidine-kinase
MFLMAKLDDGQIRFNQERFDLAALGRQIIHEASLQTGGKRLDFELSCVEEVACFCGDRFYLQQAVENIVANAIRHSNDNGKIGISITVEKGMYHFAVSDTGSGIELQDLPHIFEPYYTKKQAGFHTTGLGLAISREIVRRLGGTITVASRPGEGAAFTLLLPPS
>NC_007907.1|WP_011460597.1|3158478_3159375_-|HAMP-domain-containing-histidine-kinase
MLPWILCAGLSLAVAVLCVKIRLLHQSMDEIRVEFKERLTLDTNTLVSISSADPRARRLAADINTQLRLLRLLRRHYLNGDQELKEAVTNISHDLRTPLTAICGYLELLEEEEKSAAAARYLAFIANRTEALKQLTEELFRYSLILAARDTMQLELLSVNGVLEESLAAVYPALLERRITPVVHLPEQPVKRRLDKGALSRIFGNILNNALKYSDGDLEVRLRDNGEVLFTNTAAALDQVQVGKLFNRFFTVEAARHSTGLGLAIAKTLVEQMNGEITAHYREQKLSICIRFPLAGPD
>NC_007907.1|WP_035213780.1|3160215_3161130_-|ATP-binding-cassette-domain-containing-protein
MDYVLTTQALSKHYGQFKALNGLSLHVPQGAIYGFVGKNGAGKTTLIRLVCGLQRPTSGDYSLYGVSSRTREIVKSRRRMGAVVETPSIYLEMTAWENLREQYRVLGLPSFEGIPELLELVGLAEAGQKKAKNFSLGMKQRLGIAVALCGDPDFLVLDEPVNGLDPQGIIEMRELILKLNREQRVTVLISSHILDELARLATHYGFIDGGRMVKEISAGELEEACRKCLRVEVSSTETLARVLDGLQLDYKILSQRRADVFAKVNISQLTLALAREGCEVISVQERDESLESYYLSIVGGGSHG
>NC_007907.1|WP_005810582.1|3161268_3161931_-|response-regulator-transcription-factor
MKRILIIEDDLHIGNMLEEVLVKEGYAVARAYSGTEALLALPVEKPDLILLDLMLPGLSGEDIMPKLKGIPVIVVSAKTDVDDKVGLLLEGAADFITKPFHMKELLARVVVGLRKGPEPDKAVLAFADIRLDTALHTVWVADKEVRLTRTEYAILKLLMQNPAQVITKSLLLDRISGDTPDCTESSLKMHISHLRRKLREASGRDYIEAVWGIGFKLKTD
>NC_007907.1|WP_011460600.1|3162124_3163000_-|AraC-family-transcriptional-regulator
MDYREALEQAVIYIEDHLGGDIKVEEVAGAAGYSYYHLNRQFTAVLGESIGSYIKKRRLAEAAKKLLYTDRKIIDIAMANGFDSPEAFSRAFKAVYKVSPQIYRQNRLDTFIAGKERLDAGLLEHLACNVTVHPQIVELPEIKVAGLRGETTLRDNRLRELWERANALYPQIPNRIPQGRAFGICEACAENTLYTMNEDILFTEVAGTEVSSFAGLTEPFVAKVIPGGRYAVFTHRGTLGRLLQTFDYIWGTWFLTTKEELDWREDFELYDGRFLGYDHPGSEVDLYIPIR

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Crispr_ID: NC_007907_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_6

3179147-3182163

TypeI-B

Consensus_repeat	Method
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CRISPRCasFinder
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CRT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	PILER-CR

45 spacers

RT,cas5,cas7b,cas8b1

The CRISPR arrays of NC_007907_6

>merge|NC_007907|6|3179147-3182163|CRISPRCasFinder,CRT,PILER-CR
GTTACAATTCCTTATAGGTAAGCTAAGAACACTAAAATTTGAATTAGAAAAAACAATTCAAATTCTGGAGTTTCAATTCCTTATAGGTAAGCTAACAACAAGTTGCCGATGCCATGAAAGAATTTAATATCCGCATGTTTCAATTCCTTATAGGTAAGCTAACAACGGTTACACTAGTTACGCTTGGAGTGCCGGGCACAAAGAGTTTCAATTCCTTATAGGTAAGCTAACAACCATCTTCATTCATCTGAAGGTCGTTTTTGGCCATTCCCGTTTCAATTCCTTATAGGTAAGCTAACAACTTCCGAACACATTGAGACGAACCGCGCTGGGTCTTGAGTTTCAATTCCTTATAGGTAAGCTAACAACTCGGCTAATCTGGCGTTTATGGACGCGATTTTCCGGTTTCAATTCCTTATAGGTAAGCTAACAACAATGTTCTGACTTGTAAGGTAGGGCCCAAAAGCTCGTTTCAATTCCTTATAGGTAAGCTAACAACGTAGGGATGGTTGGCGATAAGTTGTCAATCGTGGACATGTTTCAATTCCTTATAGGTAAGCTAACAACCGCAGCAACAACAAGACCGCATCCACCCCACTCAAAAGCGTTTCAATTCCTTATAGGTAAGCTAACAACCACGCCGTTCTTGTCGCAGAGTCCCGTAAATTGCATGTTTCAATTCCTTATAGGTAAGCTAACAACGGGATGAGTCGCGACTTTACAAACTGGTTTAAGTACGTTTCAATTCCTTATAGGTAAGCTAACAACCAAGTGCGGGTGATAAATGCGATCACCTTGGCAGAGGTTTCAATTCCTTATAGGTAAGCTAACAACGATGATCAGGAAGCCGGCGTTATCGAGTATCGAAACAGTTTCAATTCCTTATAGGTAAGCTAACAACGTATAGAGACTTTCCAGCCCCATTGACCTCTGCGGGTTTCAATTCCTTATAGGTAAGCTAACAACTATGACGCTGGACGAGATTAAGCAAGCTTGGAAAATGAGGTTTCAATTCCTTATAGGTAAGCTAACAACGGTACCAGAACCAATGCACCACCGTGAGGGCGCGATCACGTTTCAATTCCTTATAGGTAAGCTAACAACTGTATACTTTGCCCTATTCAAAACATGCCGAAAGATGTTTCAATTCCTTATAGGTAAGCTAACAACAACCCATGAAAGAAGGGGCAGAATTAAAATCTCCTGTTTCAATTCCTTATAGGTAAGCTAACAACGCGATAGCTACCGATACCGGCAGCAGTACAACGAATAGTTTCAATTCCTTATAGGTAAGCTAACAACGTTGGGAGGGAAGAAGGCATGAGTGCAAAGTTTGAGTTTCAATTCCTTATAGGTAAGCTAACAACCTTACCCCTTTGGCATCCACTTCACCGTTGGAGAATTGTTTCAATTCCTTATAGGTAAGCTAACAACGTTGCCCGGAATCTGCAGACCATCATAAAGCTGGGGTTTCAATTCCTTATAGGTAAGCTAACAACCTACACGAACTGAAAGTACACGGTCTACCTTCACAGGTTTCAATTCCTTATAGGTAAGCTAACAACTATGTCGATTAGCTGACTTGTGTAGATCCCCTCTTTGGTTTCAATTCCTTATAGGTAAGCTAACAACCATGGCGCTCCCTAAATCCAAATACCGGTACTGCTGTTTCAATTCCTTATAGGTAAGCTAACAACGGTCTCCTGAGCGATATAATCCGTCATATCCCGGGGTTTCAATTCCTTATAGGTAAGCTAACAACTGATAGAGTTGTGGATTTTCAACCCGGGGATGGGTGTTTCAATTCCTTATAGGTAAGCTAACAACCACCATCCACGGCGATCTCCGGAATGGGAACTGCAGGTTTCAATTCCTTATAGGTAAGCTAACAACAGGCATCAGCGCAACTTCATCAAACAGAATCCCGGCGTTTCAATTCCTTATAGGTAAGCTAACAACCAATGCGCTTTTTAGCGCAGGAATACTATGATAACGGGTTTCAATTCCTTATAGGTAAGCTAACAACTCAAATCTGCGCTACAAGTCTCACACGGATCCCCGGTTTCAATTCCTTATAGGTAAGCTAACAACCAAGCCAACCCTCCTTAAGCCGGGGGCAGAGAAGCTGTTTCAATTCCTTATAGGTAAGCTAACAACAATACTGGACTACATCGGCAGACTGGATCGGACAGAGTTTCAATTCCTTATAGGTAAGCTAACAACGGCCAAGAGTGGAAAGAGCTGCAGCATAAAACTTACTGTTTCAATTCCTTATAGGTAAGCTAACAACTAGATTGACTGGAGGGAAAGAGAATGAGCCGTGAGATGTTTCAATTCCTTATAGGTAAGCTAACAACGTGGCAAAAGCTGAGAGCAGACGTATTGGATGAGTAGTTTCAATTCCTTATAGGTAAGCTAACAACCGGTTCATGGCGGCTCGCGCGCCGCTTTCGGTTTTAGTTTCAATTCCTTATAGGTAAGCTAACAACCGATTCAACCTCCCGAAAATTAGTAAGGCAACAATGTTTCAATTCCTTATAGGTAAGCTAACAACGAGGAATTGGTGACTGTTTATCCCTCGGAGGATCAGGTTTCAATTCCTTATAGGTAAGCTAACAACTTATAATCAGGTTCACCATACCCCAGCTCTTCAAACGTTTCAATTCCTTATAGGTAAGCTAACAACTTTTTCATTTATTATATTTTACTAGTTAACTAGTTAGTTTCAATTCCTTATAGGTAAGCTAACAACCTTACACAAATATCCTCACTTTCTCCAGATTAGCTTAGTTTCAATTCCTTATAGGTAAGCTAACAACTTGGTTCATGATAAATTATACATTTTTTGTTTTCATGTTTCAATTCCTTATAGGTAAGCTAACAACTAAGACTTCTTTTCTTGTTTTAAGATTGTTCACATGTTTCAATTCCTTATAGGTAAGCTAACAACGAAGAAAATCATAGAGTAACTGAAACCGGAGAATTACGTTTCAATTCCTTATAGGTAAGCTAACAAC

>NC_007907|6|6|3179147-3182163|CRISPRCasFinder
GTTACAATTCCTTATAGGTAAGCTAAGAAC	ACTAAAATTTGAATTAGAAAAAACAATTCAAATTCTGGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AAGTTGCCGATGCCATGAAAGAATTTAATATCCGCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTTACACTAGTTACGCTTGGAGTGCCGGGCACAAAGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CATCTTCATTCATCTGAAGGTCGTTTTTGGCCATTCCC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTCCGAACACATTGAGACGAACCGCGCTGGGTCTTGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TCGGCTAATCTGGCGTTTATGGACGCGATTTTCCG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AATGTTCTGACTTGTAAGGTAGGGCCCAAAAGCTC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTAGGGATGGTTGGCGATAAGTTGTCAATCGTGGACAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGCAGCAACAACAAGACCGCATCCACCCCACTCAAAAGC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CACGCCGTTCTTGTCGCAGAGTCCCGTAAATTGCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGGATGAGTCGCGACTTTACAAACTGGTTTAAGTAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAAGTGCGGGTGATAAATGCGATCACCTTGGCAGAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GATGATCAGGAAGCCGGCGTTATCGAGTATCGAAACA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTATAGAGACTTTCCAGCCCCATTGACCTCTGCGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TATGACGCTGGACGAGATTAAGCAAGCTTGGAAAATGAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTACCAGAACCAATGCACCACCGTGAGGGCGCGATCAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TGTATACTTTGCCCTATTCAAAACATGCCGAAAGAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AACCCATGAAAGAAGGGGCAGAATTAAAATCTCCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GCGATAGCTACCGATACCGGCAGCAGTACAACGAATA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTTGGGAGGGAAGAAGGCATGAGTGCAAAGTTTGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTTACCCCTTTGGCATCCACTTCACCGTTGGAGAATT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTTGCCCGGAATCTGCAGACCATCATAAAGCTGGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTACACGAACTGAAAGTACACGGTCTACCTTCACAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TATGTCGATTAGCTGACTTGTGTAGATCCCCTCTTTG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CATGGCGCTCCCTAAATCCAAATACCGGTACTGCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTCTCCTGAGCGATATAATCCGTCATATCCCGGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TGATAGAGTTGTGGATTTTCAACCCGGGGATGGGT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CACCATCCACGGCGATCTCCGGAATGGGAACTGCAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AGGCATCAGCGCAACTTCATCAAACAGAATCCCGGC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAATGCGCTTTTTAGCGCAGGAATACTATGATAACGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TCAAATCTGCGCTACAAGTCTCACACGGATCCCCG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAAGCCAACCCTCCTTAAGCCGGGGGCAGAGAAGCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AATACTGGACTACATCGGCAGACTGGATCGGACAGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGCCAAGAGTGGAAAGAGCTGCAGCATAAAACTTACT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TAGATTGACTGGAGGGAAAGAGAATGAGCCGTGAGAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTGGCAAAAGCTGAGAGCAGACGTATTGGATGAGTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGGTTCATGGCGGCTCGCGCGCCGCTTTCGGTTTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGATTCAACCTCCCGAAAATTAGTAAGGCAACAAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GAGGAATTGGTGACTGTTTATCCCTCGGAGGATCAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTATAATCAGGTTCACCATACCCCAGCTCTTCAAAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTTTTCATTTATTATATTTTACTAGTTAACTAGTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTTACACAAATATCCTCACTTTCTCCAGATTAGCTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTGGTTCATGATAAATTATACATTTTTTGTTTTCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TAAGACTTCTTTTCTTGTTTTAAGATTGTTCACAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GAAGAAAATCATAGAGTAACTGAAACCGGAGAATTAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC

>NC_007907|6|5|3179147-3182163|CRT
GTTACAATTCCTTATAGGTAAGCTAAGAAC	ACTAAAATTTGAATTAGAAAAAACAATTCAAATTCTGGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AAGTTGCCGATGCCATGAAAGAATTTAATATCCGCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTTACACTAGTTACGCTTGGAGTGCCGGGCACAAAGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CATCTTCATTCATCTGAAGGTCGTTTTTGGCCATTCCC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTCCGAACACATTGAGACGAACCGCGCTGGGTCTTGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TCGGCTAATCTGGCGTTTATGGACGCGATTTTCCG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AATGTTCTGACTTGTAAGGTAGGGCCCAAAAGCTC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTAGGGATGGTTGGCGATAAGTTGTCAATCGTGGACAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGCAGCAACAACAAGACCGCATCCACCCCACTCAAAAGC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CACGCCGTTCTTGTCGCAGAGTCCCGTAAATTGCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGGATGAGTCGCGACTTTACAAACTGGTTTAAGTAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAAGTGCGGGTGATAAATGCGATCACCTTGGCAGAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GATGATCAGGAAGCCGGCGTTATCGAGTATCGAAACA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTATAGAGACTTTCCAGCCCCATTGACCTCTGCGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TATGACGCTGGACGAGATTAAGCAAGCTTGGAAAATGAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTACCAGAACCAATGCACCACCGTGAGGGCGCGATCAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TGTATACTTTGCCCTATTCAAAACATGCCGAAAGAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AACCCATGAAAGAAGGGGCAGAATTAAAATCTCCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GCGATAGCTACCGATACCGGCAGCAGTACAACGAATA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTTGGGAGGGAAGAAGGCATGAGTGCAAAGTTTGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTTACCCCTTTGGCATCCACTTCACCGTTGGAGAATT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTTGCCCGGAATCTGCAGACCATCATAAAGCTGGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTACACGAACTGAAAGTACACGGTCTACCTTCACAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TATGTCGATTAGCTGACTTGTGTAGATCCCCTCTTTG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CATGGCGCTCCCTAAATCCAAATACCGGTACTGCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTCTCCTGAGCGATATAATCCGTCATATCCCGGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TGATAGAGTTGTGGATTTTCAACCCGGGGATGGGT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CACCATCCACGGCGATCTCCGGAATGGGAACTGCAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AGGCATCAGCGCAACTTCATCAAACAGAATCCCGGC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAATGCGCTTTTTAGCGCAGGAATACTATGATAACGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TCAAATCTGCGCTACAAGTCTCACACGGATCCCCG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAAGCCAACCCTCCTTAAGCCGGGGGCAGAGAAGCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AATACTGGACTACATCGGCAGACTGGATCGGACAGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGCCAAGAGTGGAAAGAGCTGCAGCATAAAACTTACT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TAGATTGACTGGAGGGAAAGAGAATGAGCCGTGAGAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTGGCAAAAGCTGAGAGCAGACGTATTGGATGAGTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGGTTCATGGCGGCTCGCGCGCCGCTTTCGGTTTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGATTCAACCTCCCGAAAATTAGTAAGGCAACAAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GAGGAATTGGTGACTGTTTATCCCTCGGAGGATCAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTATAATCAGGTTCACCATACCCCAGCTCTTCAAAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTTTTCATTTATTATATTTTACTAGTTAACTAGTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTTACACAAATATCCTCACTTTCTCCAGATTAGCTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTGGTTCATGATAAATTATACATTTTTTGTTTTCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TAAGACTTCTTTTCTTGTTTTAAGATTGTTCACAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GAAGAAAATCATAGAGTAACTGAAACCGGAGAATTAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC

>NC_007907|6|5|3179216-3182163|PILER-CR
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AAGTTGCCGATGCCATGAAAGAATTTAATATCCGCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTTACACTAGTTACGCTTGGAGTGCCGGGCACAAAGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CATCTTCATTCATCTGAAGGTCGTTTTTGGCCATTCCC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTCCGAACACATTGAGACGAACCGCGCTGGGTCTTGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TCGGCTAATCTGGCGTTTATGGACGCGATTTTCCG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AATGTTCTGACTTGTAAGGTAGGGCCCAAAAGCTC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTAGGGATGGTTGGCGATAAGTTGTCAATCGTGGACAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGCAGCAACAACAAGACCGCATCCACCCCACTCAAAAGC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CACGCCGTTCTTGTCGCAGAGTCCCGTAAATTGCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGGATGAGTCGCGACTTTACAAACTGGTTTAAGTAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAAGTGCGGGTGATAAATGCGATCACCTTGGCAGAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GATGATCAGGAAGCCGGCGTTATCGAGTATCGAAACA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTATAGAGACTTTCCAGCCCCATTGACCTCTGCGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TATGACGCTGGACGAGATTAAGCAAGCTTGGAAAATGAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTACCAGAACCAATGCACCACCGTGAGGGCGCGATCAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TGTATACTTTGCCCTATTCAAAACATGCCGAAAGAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AACCCATGAAAGAAGGGGCAGAATTAAAATCTCCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GCGATAGCTACCGATACCGGCAGCAGTACAACGAATA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTTGGGAGGGAAGAAGGCATGAGTGCAAAGTTTGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTTACCCCTTTGGCATCCACTTCACCGTTGGAGAATT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTTGCCCGGAATCTGCAGACCATCATAAAGCTGGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTACACGAACTGAAAGTACACGGTCTACCTTCACAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TATGTCGATTAGCTGACTTGTGTAGATCCCCTCTTTG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CATGGCGCTCCCTAAATCCAAATACCGGTACTGCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGTCTCCTGAGCGATATAATCCGTCATATCCCGGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TGATAGAGTTGTGGATTTTCAACCCGGGGATGGGT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CACCATCCACGGCGATCTCCGGAATGGGAACTGCAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AGGCATCAGCGCAACTTCATCAAACAGAATCCCGGC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAATGCGCTTTTTAGCGCAGGAATACTATGATAACGG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TCAAATCTGCGCTACAAGTCTCACACGGATCCCCG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CAAGCCAACCCTCCTTAAGCCGGGGGCAGAGAAGCT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	AATACTGGACTACATCGGCAGACTGGATCGGACAGA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GGCCAAGAGTGGAAAGAGCTGCAGCATAAAACTTACT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TAGATTGACTGGAGGGAAAGAGAATGAGCCGTGAGAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GTGGCAAAAGCTGAGAGCAGACGTATTGGATGAGTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGGTTCATGGCGGCTCGCGCGCCGCTTTCGGTTTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CGATTCAACCTCCCGAAAATTAGTAAGGCAACAAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GAGGAATTGGTGACTGTTTATCCCTCGGAGGATCAG
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTATAATCAGGTTCACCATACCCCAGCTCTTCAAAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTTTTCATTTATTATATTTTACTAGTTAACTAGTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	CTTACACAAATATCCTCACTTTCTCCAGATTAGCTTA
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TTGGTTCATGATAAATTATACATTTTTTGTTTTCAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	TAAGACTTCTTTTCTTGTTTTAAGATTGTTCACAT
GTTTCAATTCCTTATAGGTAAGCTAACAAC	GAAGAAAATCATAGAGTAACTGAAACCGGAGAATTAC
GTTTCAATTCCTTATAGGTAAGCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_011460614.1\|3190746_3191037_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NC_007907.1\|WP_041272466.1\|3178728_3179022_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_005810603.1\|3170727_3172959_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274912
NC_007907.1\|WP_005816142.1\|3188725_3189502_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|313370
NC_007907.1\|WP_011460612.1\|3189787_3190318_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_007907.1\|WP_005816130.1\|3182800_3184372_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NC_007907.1\|WP_005810599.1\|3168159_3169029_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213231
NC_007907.1\|WP_172636478.1\|3176227_3177103_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|214874
NC_007907.1\|WP_005810606.1\|3173221_3174025_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NC_007907.1\|WP_005810614.1\|3175041_3176013_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NC_007907.1\|WP_158303419.1\|3191420_3191594_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_041272468.1\|3192334_3192586_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378913
NC_007907.1\|WP_173361721.1\|3174226_3174394_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_005810620.1\|3177395_3177665_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_005816134.1\|3186110_3188177_-\|hypothetical-protein	cas8b1	mkCas0074_cas8b1_CAS-I-B	unknown
NC_007907.1\|WP_011460613.1\|3190423_3190750_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_007907.1\|WP_005810601.1\|3169025_3170243_+\|ABC-transporter-permease	unknown	unknown	unknown
NC_007907.1\|WP_005810622.1\|3177668_3178706_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_005816131.1\|3184438_3185134_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_007907.1\|WP_173361722.1\|3185173_3186139_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_011460614.1\|3190746_3191037_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	6.71018e-24
NC_007907.1\|WP_005810603.1\|3170727_3172959_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274912	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2. The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown.	2.2581e-80
NC_007907.1\|WP_011460612.1\|3189787_3190318_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	5.26484e-36
NC_007907.1\|WP_005816130.1\|3182800_3184372_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	2.39705e-32
NC_007907.1\|WP_005810599.1\|3168159_3169029_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	8.36322e-106
NC_007907.1\|WP_172636478.1\|3176227_3177103_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	1.52673e-26
NC_007907.1\|WP_005810606.1\|3173221_3174025_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	7.65588e-22
NC_007907.1\|WP_005810614.1\|3175041_3176013_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	4.98045e-26
NC_007907.1\|WP_041272468.1\|3192334_3192586_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378913	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain. This domain appears to be a zinc binding DNA-binding domain.	1.77303e-14
NC_007907.1\|WP_005816142.1\|3188725_3189502_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.64577e-117
NC_007907.1\|WP_011460613.1\|3190423_3190750_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	5.18401e-40
NC_007907.1\|WP_005816131.1\|3184438_3185134_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.25859e-20
NC_007907.1\|WP_173361722.1\|3185173_3186139_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.72162e-76

>NC_007907.1|WP_041272466.1|3178728_3179022_-|hypothetical-protein
MKKMFLAASALALSLALVGCSNVKVSVEEKDQSTLSVESIQLERKIIIRNSIADPLPEEAQKALSLPDKGGPQRLPNVDLSTPIIITKMPYPERPQP
>NC_007907.1|WP_005810622.1|3177668_3178706_-|hypothetical-protein
MEISMKELYMNHFADHYGLDENSCMIILPLERALIESKLKVKECIFFPPDFLDLNKAVFVEPFSTTIRGNATFITGFKSSVFYRLPGVAFAYKLDWNAFFKDYSHKDDAMLIKQFSHKADSALDIVRFECCNISRTGDLPAKAGVFNSAGFSGALLYNPYDNEAFRIGAKISTYLIADGMGLDFPNEISCAYDDSKGIGPIIKQALLLYTEVLEASNDTSKFYRAMSLLEFLASPNETQIFKEVKSQIICHLAKDKKSYHTLSDRFQELSGKKNMNNEEVGYRTLIVHQGKRIEDILNEAEIKELFLELDNYIKLIISDMFLYKDKSWDEFNNYRIRLKQKLKVM
>NC_007907.1|WP_005810620.1|3177395_3177665_-|hypothetical-protein
MIKMFYGYRCINRNGSHYPADPLHNEDEIKVYLEKHMFKYPEIKICNSKDEVLIRTIDGRIISPEEDEEYNNQWKNYQQYMKQNFEDIV
>NC_007907.1|WP_172636478.1|3176227_3177103_-|AraC-family-transcriptional-regulator
MDWITGIQRSLDYTEAHLTEKIDYEMVAKQAYSSAFHFQRVFSILCGFSLGDYIRMRRLARAAEDLLCTDEKIIHIALKYGYDTPESFSRAFLRFHGITPTEARRGGTVKSFFRLSVKLILSGGSTMDYRIEKKDAFKIICKKKQVNKPQGDSATEEISAFWNQCTKDGTMEDICKYGRFDGLGGVLGICFSGDMADAAFPYGIGAEYNGVPLHGEGLEILEIPPYTFAVFQCKGPMPEVFKTTYQRIVTEFFPQSNYQYGNGVELEVYPSADVSNPEYTCEIWIAVNEKK
>NC_007907.1|WP_005810614.1|3175041_3176013_+|AraC-family-transcriptional-regulator
MYEWHKQIQIIVDEIDESIRQSHDEALTLRFLSHKLGYSEFHTTRKFKEISGMPFRDYLRLRKLAFALKEVRDSERSLLDIAFDYGFSSHEAFTRAFKRTYGVSPREYRRKPVPVVLRTKINPFDRYFLGFGEIGMMKSTVDVKIYFVTIPAHKFLHIKNYESNGYWDFWQKQSLIPGQDCETICGLLDSIKGKLDDDGGKEVNSGSGQLMAYIHDPEGRLCDWGFLRTECYGVRLPADYQGEVPPQMLMMDIPEAEYLVFEHGPFDYEQENRSVEEKLEMAMKTFDFSDTGYCFDTTPGRIIYMYHDPERFFKYIRPVGKQR
>NC_007907.1|WP_173361721.1|3174226_3174394_-|hypothetical-protein
MTDYKRMYFQLAAQVADAVDILLKAQQEGEQEFMNGESLEEGKVMVIGNERGECD
>NC_007907.1|WP_005810606.1|3173221_3174025_-|MerR-family-transcriptional-regulator
MKYKIGDVQRILGIPAETLRYFEKKGLITPCKNEGNNYRYYDTLDLNKLVAYKSYRGMEFSMDESLKIVNSLSHAEVTGSIDSQIKVIENKINYYQALRIRLEELKHSYEQVEAIEGKFRITDSPEVFLFYNQVNDAFCTEEEQVEMTHNWLKQLPFICLALHVPKDELPLGSLVHYGYAISTRYEEILTQLNAPGVQKIPSQKSIYTILACEFLTPRVFTEVLDYMKQHDLVLSGDVIGWIINEERSATEVIRYFEVWLPIAEKSQ
>NC_007907.1|WP_005810603.1|3170727_3172959_-|FAD-dependent-oxidoreductase
MGISRREFLTGVGAAGLVAATGGGLAGCAPAAPAASDPVPAQGSAAGVPASGELIPAAYLNPQDYDYRQNTTDFKTLFSPLKIGPLNLNHRMVKSAAGSATYLAGFTDELLQYYVNFAKGGVELIWVEEIAAFEPPADGGSIPAATMEFGRKLVKECGKYGAKLGYQWAQFPSTPVGSMTAKDIAGAQAHGVALAQAIQQMGFAALEINAAGFNLGEQFLSRFHNTRTDEYGAGSLENRARFVTECIQKIKKACGSDFVVQILIDCIEENDNLTNNATLMTLDNAVTAPHNKVTTIEEGIGMAKLFEAAGCDSMHLRLGPLGNHPCQFGSDLYFILNGIEGATGYGTQWDFSRHWQGQLIGNHSGAGMLIDIVARYKQALNIPCGTVTYMDPAHAPDYFEKALADGKVDFYIMNRPLTVDSDYVNKLKEGRIDEIAPCTRCLHCHIGSNEMNRAMGYCRVNALTQRVMTDKGPKTYELQPAAAAKNVMVIGGGPAGMEAARIAAARGHKVTLYEKSSSLGGNLTFARMVKGPHENLDDLKAYLTKQQERNGVTVVLNKEVDAALINSTAPDAVILAVGSLPGEVGASGGTVPILDFIKFMGNDTGKNVVVFGSNAQAFDAALWLTVHKKKVTIVTPNKNEDLDKQQSQHAMRFMTTALYSLGVKVYPESTIKEIGDGQITVATNGGFETVIAADSIINAADLLPNKSLLDGISVRETYAIGDCNEPFNIALAIRAGNDVGRTV
>NC_007907.1|WP_005810601.1|3169025_3170243_+|ABC-transporter-permease
MSGFWTLVGFEYKKILGKPRVQLTLLLAVLITAFSVGATLLGSYYLEGRPYETHYEAMVKDRDYARALSGRPLDKELIMATVRAYGQIPQADTYQATEEYQTIARPYSSLYGIVRSVFNTGSKRFNMEDFQALTPAQAEGFYTTRQERLEQMIRQTQMGEAAKTQVLNLSEQVKTPLTFAYTESYTRFFVLINTLGLTAGFVTAICLAPLFAGEYTSGAAQLILSSKRGKNKLIAAKLLTGFSLAALISLVLSALTFLLSRLIFGGEGAGAPLQLYLIFSPYPLTMGHTALLLALAAFLACLMTAALTMVLSARLHSPFAVIILISALLIAPMLGSVSEHNLLLYRLYHLFPTQMTALWSVMDPIQYELPGLVVKPYVFLPLFAAAVSALLTPLAYRSFKHHQIG
>NC_007907.1|WP_005810599.1|3168159_3169029_+|ABC-transporter-ATP-binding-protein
MELILDQVTKQYGKKPACHCISLTLRQGIYGLLGANGAGKTTLMRMLCGVLAPTSGTIRFNTLDVSHEDYRDALGYLPQDFGYYPEFSALEFLLYMAALKGLPKPRAEKRSWELLEEVSLTPAAKQKIKTFSGGMKQRLGIAQSLLNDPRLLILDEPTAGLDPKERVRFRNLISRLGTERIILLSTHIVSDVEHIAGTILIMKEGRLLHQGTRDQIIATMGGKVWECTRPQAEADALCREYPVINLRQESSGEMLLRLIADGQPPAGARNVPATLEDVYLYYFREVNEQ
>NC_007907.1|WP_005816130.1|3182800_3184372_-|RNA-directed-DNA-polymerase
MLKLAERSLDWALLHIEKYGDTDIFPVPFEFEAIRYQWEQSMRSWLRSQDILQWTPRPYRRCLTPKHRYGFRVATQLDPLETIVFTSLVYEIGKDIESARIPKEEKIAFSHRFAAKPDGRMYDSEYSWDLFQDHCGELVESNDYRYVVIADIADFYPRIYFHPLENALSECTRKKNHIKAITSMIKNWNFSVSYGIPVGSAASRLLAELVIDDVDRGLLSEGVKHCRYVDDYRIFCKNEREAHEHLALLANTLFENHGLTLQQHKTRILPIEEFYNHYLQRENSQELNSLSAKFYHILDSLGIENRYEDIDYDDLAADVQAQIDNLNLMGILKEQVLETEAIDIPLVRFVLKRLKQIDSEESVDFVLDNINQLYPVFKEVITYITSLRSLNTADKHEIGKKLIQLLEDSIVSHLEYHRLWVFDTFTKDREWDNEGKFVNLYNSYHDEFSQRKLILALGRAQQHSWFKSRKRTVNQMSPWLKRAFLAAASCLPGDEAEHWYKSLQGSLDPLELTITKWVQANPF
>NC_007907.1|WP_005816131.1|3184438_3185134_-|CRISPR-associated-protein-Cas5
MKGLAFDVLGTVGHFRRPDTTATQMTYPFITPTAAKGLVGAILGIEDFVTSDRIGIELLRPVCTVAQQMSMLGKDPGNSFNRPTTLELLVNPGYRLYYTGEEHTEELLDFLLEEKAAYTTYLGAAYALTKPVLHRVYAEVSYPAPEEKEIESRTVVPTALIREIVLKGERYYCRAGGYLYEYKGQRRFEKSVDFLYEKDGKPIAFIPKSHQEEGALDLRLARFGEDWVCLV
>NC_007907.1|WP_173361722.1|3185173_3186139_-|type-I-CRISPR-associated-protein-Cas7
MGEKSMKSGEILFVKAVKDGIPNRDPLNDSDARRLFPEEDGRISLSDVSIKRDVRDFVIDLEEDGGKEQKNHIFVQEKVNDKGKLLGRGSLAEGIAKRVGKEKKAKEDMKSVLIEHCFDVRTFGIVYSVKPKFNLTGPVQFGWAHSLHPVDTQYVQGTVVMPSTDSTAEGEGKTQGTIWTSYTVPFAVFVMPAVINAKAAQHSGMTPEDQELLLRALWQGTQHRQARGRGQQQPLILIHIEYSDPFYRIGYLEDLITMSPGAEAWKASGKQPSSLQDVSFDLTRLLAAVAERQERIARCRIWVHPGVTIIGDIGTWRQPLW
>NC_007907.1|WP_005816134.1|3186110_3188177_-|hypothetical-protein
MLAESIIRIGRPIKNSDMPCREKIRLLTDVSSENCKNFFRHVFLIEIAGKETGFQLIEMGNKTVGEKKETFKVDEKRNVSFPVFYPNGGNALHAQGIYPLPCYLMYDPHIKALKDKEAFKKEFLLSRLGKTLFYRDKTAKERAALADRIAELLASREAGLVREEKQLGVMMIFDQDLPMFHKHKERTDNAHSLWIAESPLTPGAHLHLDGEEVLKGISRAKFDEAAELGREEKAISTLTNRQADEVVSIYNKSWLWLSPTWEAPRSIYWQEDQWTKGIKVDEESYTAYLYGVQFLKEIQVPIASAILKEMFAPITNVEAKNMMSIDSFEAIYGIPLVLPLLDGDSRQSFAKYRKLLKKSSEKQRDGDLQLKVLVGIDRIVPEMEDDHRLTLLYYSGDLSRGNMHIRAVIEDVIPSVAGRVEKLVNRLNTGETARIQEALGMKEQPVYRAQSLPALLANAYGPGYVWESLRGVLHKEPLRLERLYRATARKLNEAANKEERGQMLQELVFHYSFLYFFKHYHEQIIGIEKGVKSLADWDEFKTLYGQGKLEPGHLGEAEQLGFAAGLLLKQFANSYYQKTGKDFIKQRVMKFGSKLTPEMVWKNGLLRCEELAQQWSMNLGSNFRPVLAQTLLGFLAKEQELIREKDIFMTAFWSGYLLYKKNDEDSISADQDKAEAEGKDGGEEHEKR
>NC_007907.1|WP_005816142.1|3188725_3189502_-|nucleotidyltransferase-domain-containing-protein
MKERIIGELAQIEIEKQVKILYACESGSRAWGFPSVDSDYDVRFIYVHPVEWYLSIADKRDVIEKIDGLLDLSGWELRKALRLFRKSNPALLEWLQSPVVYWEATVIPTMMKEMTDKTFSSRSSLYHYLNMARGNFREYLQGEWVKSKKYFYVLRPILACMWIEEYHTVPPMEFKVLLNALLPEGQLKNAIQDLLRRKRAGDELTAEPRIGVINDFINRQLEHFQTLLEGEEGIVPVGEQEFDGLFRRALKESWGQYL
>NC_007907.1|WP_011460612.1|3189787_3190318_-|GNAT-family-N-acetyltransferase
MIYFETPRLIFRDWKEQDLKGFRMMNKDSRVMRYFPETLTEQETDSLYEMIGDELSLGYGLYAVETKDNHEFIGFIGFHRATFAAAFTPCVEIGWRLNYAAWGNGYATEGAKACLDYGFNTLGLDEVYSFTAKVNLPSENVMKKLGMKKVMEFKHPHVAENSPLSEHVLYRCQLKG
>NC_007907.1|WP_011460613.1|3190423_3190750_-|DUF86-domain-containing-protein
MKDDKVYLHSILESIVKIETYTNSGKEEFMTSGIIQDAVIRNLEIIGEAAKRVSQGLKEQTPEIPWRQMAGLRDVLIHDYMGISLNIVWNVVQNELPQLKRKMVVFLE
>NC_007907.1|WP_011460614.1|3190746_3191037_-|nucleotidyltransferase-family-protein
MPAINEIMAKRDQILSTAAQYKFFNVRLFGSVLREEEKTESDIDFLVECGEDCSLFDLISLKYDLEEILGRKIDVVTPDSVHWTLKDKILQEARPI
>NC_007907.1|WP_158303419.1|3191420_3191594_-|hypothetical-protein
MKMTDYKKMYFQLAAKVADVMDILLKAQREGEKEYMDGEPFPEGKVMVIQDEGCECE
>NC_007907.1|WP_041272468.1|3192334_3192586_-|AraC-family-transcriptional-regulator
MKTCIACGMPMTKAADYALGDESKDYCLYCARPDGSMQSYPEKVEGMTDFLIRTQGLDREAARQTAIRTLSKLPAWQDRETSC

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Crispr_ID: NC_007907_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_7

5122979-5123100

Orphan

Consensus_repeat	Method
AATTGTTCTTCTGTCATCATACCCGACTCAACCATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007907_7

>merge|NC_007907|7|5122979-5123100|CRISPRCasFinder
AATTGTTCTTCTGTCATCATACCCGACTCAACCATTTGTTCACGAACAGCTGACATATCTTGAGCATTCATTGGCATGTTTTCCAATTGTTCTTCTGTCATCATACCCGACTCAACCATTTG

>NC_007907|7|7|5122979-5123100|CRISPRCasFinder
AATTGTTCTTCTGTCATCATACCCGACTCAACCATTTG	TTCACGAACAGCTGACATATCTTGAGCATTCATTGGCATGTTTTCC
AATTGTTCTTCTGTCATCATACCCGACTCAACCATTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_011461870.1\|5114591_5115587_-\|DUF4065-domain-containing-protein	unknown	unknown	gnl\|CDD\|274805
NC_007907.1\|WP_050754244.1\|5125683_5128011_-\|cell-wall-binding-repeat-containing-protein	unknown	unknown	gnl\|CDD\|367829
NC_007907.1\|WP_011461871.1\|5115592_5115943_-\|type-II-toxin-antitoxin-system-MqsR-family-toxin	unknown	unknown	gnl\|CDD\|374053
NC_007907.1\|WP_041272671.1\|5123501_5124203_+\|RNA-polymerase-sigma-I-factor	unknown	unknown	gnl\|CDD\|236233
NC_007907.1\|WP_011461869.1\|5113356_5113842_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011461876.1\|5122113_5122479_+\|DUF2680-domain-containing-protein	unknown	unknown	gnl\|CDD\|371301
NC_007907.1\|WP_050754245.1\|5131978_5132209_-\|SHOCT-domain-containing-protein	unknown	unknown	gnl\|CDD\|225993
NC_007907.1\|WP_011461879.1\|5124222_5125212_+\|anti-sigma-factor-domain-containing-protein	unknown	unknown	gnl\|CDD\|378948
NC_007907.1\|WP_011461874.1\|5118385_5120845_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_007907.1\|WP_011461873.1\|5118093_5118309_-\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NC_007907.1\|WP_011461872.1\|5117151_5117649_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011461882.1\|5129365_5130178_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|225092
NC_007907.1\|WP_011461881.1\|5128110_5129451_-\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NC_007907.1\|WP_041272675.1\|5132768_5133209_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_148206744.1\|5132284_5132515_-\|SHOCT-domain-containing-protein	unknown	unknown	gnl\|CDD\|225993
NC_007907.1\|WP_041272672.1\|5130438_5130927_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_148206778.1\|5120904_5121225_-\|metal-sensing-transcriptional-repressor	unknown	unknown	gnl\|CDD\|197387
NC_007907.1\|WP_050754260.1\|5121484_5121928_-\|sulfate-reduction-electron-transfer-complex-DsrMKJOP-subunit-DsrJ	unknown	unknown	unknown
NC_007907.1\|WP_011461883.1\|5131005_5131758_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|280792
NC_007907.1\|WP_041272669.1\|5114085_5114520_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_011461870.1\|5114591_5115587_-\|DUF4065-domain-containing-protein	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	8.38401e-38
NC_007907.1\|WP_050754244.1\|5125683_5128011_-\|cell-wall-binding-repeat-containing-protein	gnl\|CDD\|367829	pfam04122, CW_binding_2, Putative cell wall binding repeat 2. This repeat is found in multiple tandem copies in proteins including amidase enhancers and adhesins.	3.38477e-17
NC_007907.1\|WP_011461871.1\|5115592_5115943_-\|type-II-toxin-antitoxin-system-MqsR-family-toxin	gnl\|CDD\|374053	pfam15723, MqsR_toxin, Motility quorum-sensing regulator, toxin of MqsA. MqsR_toxin is a family of bacterial toxins that act as an mRNA interferase. MqsR is the gene most highly upregulated in E. coli persister cells and it plays an essential role in biofilm regulation and cell signalling. It forms part of a bacterial toxin-antitoxin TA system, and as expected for a TA system, the expression of the MqsR toxin leads to growth arrest, while co-expression with its antitoxin, MqsA, rescues the growth arrest phenotype. In addition, MqsR associates with MqsA to form a tight, non-toxic complex and both MqsA alone and the MqsR:MqsA2:MqsR complex bind and regulate the mqsR promoter. The structure of MqsR shows that is is a member of the RelE/YoeB family of bacterial RNases that are structurally and functionally characterized bacterial toxins.y characterized bacterial toxins.	1.2086e-11
NC_007907.1\|WP_041272671.1\|5123501_5124203_+\|RNA-polymerase-sigma-I-factor	gnl\|CDD\|236233	PRK08311, PRK08311, RNA polymerase sigma factor SigI.	1.69076e-103
NC_007907.1\|WP_050754245.1\|5131978_5132209_-\|SHOCT-domain-containing-protein	gnl\|CDD\|225993	COG3462, COG3462, Predicted membrane protein [Function unknown].	1.16634e-10
NC_007907.1\|WP_011461876.1\|5122113_5122479_+\|DUF2680-domain-containing-protein	gnl\|CDD\|371301	pfam10925, DUF2680, Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known.	3.63601e-09
NC_007907.1\|WP_148206744.1\|5132284_5132515_-\|SHOCT-domain-containing-protein	gnl\|CDD\|225993	COG3462, COG3462, Predicted membrane protein [Function unknown].	6.41892e-07
NC_007907.1\|WP_011461879.1\|5124222_5125212_+\|anti-sigma-factor-domain-containing-protein	gnl\|CDD\|378948	pfam12791, RsgI_N, Anti-sigma factor N-terminus. The heat shock genes in B. subtilis can be classified into several groups according to their regulation, and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes. Regulation of sigma factor I is carried out by RsgI from the same operon, and this N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) has been shown to interact directly with Sigma-I.	3.27257e-06
NC_007907.1\|WP_011461874.1\|5118385_5120845_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_007907.1\|WP_011461873.1\|5118093_5118309_-\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	2.0476e-14
NC_007907.1\|WP_011461882.1\|5129365_5130178_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|225092	COG2181, NarI, Nitrate reductase gamma subunit [Energy production and conversion].	4.17644e-24
NC_007907.1\|WP_011461881.1\|5128110_5129451_-\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.50641e-51
NC_007907.1\|WP_148206778.1\|5120904_5121225_-\|metal-sensing-transcriptional-repressor	gnl\|CDD\|197387	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156. This domain family includes Staphylococcus aureus CsoR (SaCsoR). SaCsoR is Cu(I)-inducible, and regulates the expression of genes involved in copper homeostasis; it represses a genetically unlinked copA-copZ operon. copA encodes a copper efflux P-type ATPase, and copZ, a copper chaperone. This family belongs to a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes Mycobacterium tuberculosis CsoR (MtCsoR), Bacillus subtilis CsoR, and Thermus thermophilus CsoR. The latter three proteins do not belong to this family. CsoRs form homotetramers (dimer of dimers). In MtCsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily, including this family, and a conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are also well conserved.	4.43321e-36
NC_007907.1\|WP_011461883.1\|5131005_5131758_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	7.784e-37
NC_007907.1\|WP_041272669.1\|5114085_5114520_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000196961

>NC_007907.1|WP_011461876.1|5122113_5122479_+|DUF2680-domain-containing-protein
MKKKIALGILTIALTIGGATAAFADTDLSKADELKNLYSQLFTVQKQIVDKQVEAGAMTKEEAEYAKNSISQNQEYRDQAVNNGNLGGFYGQHCGGYGNNMMQGYGNNMMYQGPSSTNYNF
>NC_007907.1|WP_050754260.1|5121484_5121928_-|sulfate-reduction-electron-transfer-complex-DsrMKJOP-subunit-DsrJ
MHRKGKIIIGLIVFIALATLPFLYNLGRENKGPNININTPRIQELEVKQCIESTEYMRANHMKLLVDWRDDVVRKSDRTYVNSRGESYEKSIDTCLDCHHDPNANTEDQFCITCHDYASVKPDCRQCHSWPGINEHPNPENHMTINQ
>NC_007907.1|WP_148206778.1|5120904_5121225_-|metal-sensing-transcriptional-repressor
MKEKCSTCETESNGTRTAHHDEKTIKELINRLNRIEGQVRGVKGMIERHIYCDDVLNQITSVQSALDGVSKLLLEKHFKSCVKDRLSQGDDEVIDELLKTIFRMKK
>NC_007907.1|WP_011461874.1|5118385_5120845_-|copper-translocating-P-type-ATPase
MASKTLKIEGMTCAACAKTVERVTKKLEGVTESNVNLATEKLNISFDEGKLTVGDIQVAVEKAGYKALTDAVSKTMKIEGMTCAACAKTVERVTRKLEGVNEANVNLATEKLMISYEPSLVGISDIRKAIEKAGYKAIEEETTVDTDKERKDEERKQLWRRFVLSAIFTVPLLYMAMGHMFGGVIGLRLPMFIDPMMNPLNFALVQLFLTIPVVIAGKKFFTIGFNSLFRGSPNMDSLIAIGTSAAVLYGLYAIAQIYGGNTAYVNQLYFEAAGTIITLISLGKYLEAVTKGKTSEAIKKLMGLAPKTALVVRDGKEVIINIDEVEVGDVIIVKPGEKMPVDGEVIEGNTAVDESMLTGESIPVEKNIGDTIIGASINKNGTIKYRATRVGKDTALAQIIKLVEDAQGSKAPIAKLADVISGYFVPIVIGIATLTALAWYFIGGQSTVFALTIFISVLVIACPCALGLATPTAIMVGTGKGAEHGVLIKSGVALETTHKIKTIVFDKTGTITEGKPKVTDVVVTNGITQSDLLQLAASAEKGSEHPLGEAIVKDAEEQGMEFKKLDSFKAIPGHGIEVDIEGKRLLLGNRKLMVESHVSLGNMEGISDRLAQEGKTPMYIAMDNKLAGIIAVADTVKENSKKAIERLHEMGIEVVMITGDNKRTAEAIAKHVGIDRVLAEVLPQDKANEVKKLQTEGKKVAMVGDGINDAPALAQADIGIAIGSGTDVAMESADIVLMRSDLMDVPTAIHLSKSTIRNIKQNLFWAFGYNTLGIPVAMGVLYIFGGPLLNPMFAAAAMSFSSVSVLLNALRLKGFKPVR
>NC_007907.1|WP_011461873.1|5118093_5118309_-|heavy-metal-associated-domain-containing-protein
MKKKVSIEGMSCGHCVNHVREALGELKGVTNVEVSLEGKYATLEASENVSDEAIKAAVDEVGYEVVDVQEA
>NC_007907.1|WP_011461872.1|5117151_5117649_-|hypothetical-protein
MAMTHYMELLASNQPWNLLIFMAVPVICAETLAITELIILFTRNFHGTARKINKVTGIFAGIYFLGIFLYLFTTAVIPITAGGEWRGVADVIAVGFYLLGIIPLGGIALLELGLLGKKRTQEQELALHATFVGIFLVIAHVAMIFGMLDPHIFISDLSQGMPVDM
>NC_007907.1|WP_011461871.1|5115592_5115943_-|type-II-toxin-antitoxin-system-MqsR-family-toxin
MVSEEEVVQFLKEVKKLIGEGKWDFIPRKKNLKGLAELGLTIPLAKREILSLALKHYDRGPLEDKDRPGQIWEFIKNIEMQEAYIKLKINQQGCVCISFHPSNGPKTLPFAQDKEE
>NC_007907.1|WP_011461870.1|5114591_5115587_-|DUF4065-domain-containing-protein
MDKYCDICQCEQETQVISKKESLPVRGEDIETVSDIRVCLICGNELFDEELDTKNLERVYQAYRNKHNLLSPLEIKQIRESIGSGRTVATLLGWSQATFVRYEGGAIPSASHHEQLLRLKNDPSYLNHLYDNNGNKLSDREKKKVQDLINKMDSPDQDPVVFLNKFFAQFYNKGITNIGFDFEKLAAMVQIFAETNRDLVKTKLQKLLYYADNLHFKRYGYPITGLAYIHHHFGPVPANHDLIYWALESVGVIETKPYDGPYEGEILISTEEGNHGLFSDEELEVVLTVAGYFNDFSATRISDFSHRERGYMETAQREIIPYSYASDLKLN
>NC_007907.1|WP_041272669.1|5114085_5114520_-|helix-turn-helix-transcriptional-regulator
MTLLDNLQRLMTERGISNKHELSKQSEVPYTTIINLWERGAENVQLSTLKKFKLFFNLSYDELIGDDYNFEYEGSGKGANIATLIQTLGSGFCGVRVIINEYKRVLYCVDVSYGNYCYTGETLYDALVKAIEHRDRKEVQEDSH
>NC_007907.1|WP_011461869.1|5113356_5113842_-|hypothetical-protein
MSTIPSLRKIRNIPNLPARLVLVIDPDIDLYGELLFELDRFILSDKPHRVPTFVRKQKPLTNPPEYGIYEVTPGLPIDQESIAFLATYYSTRFFADFYLEYIDEGGFYLAGSEMMLGDLENPADVKIFENGLIGVGRVLDIRWCPSCGHVLSREGYCFNCV
>NC_007907.1|WP_041272671.1|5123501_5124203_+|RNA-polymerase-sigma-I-factor
MLQDLTIDQALLLAQNGDERIREELIENHKAFIIKTSSNICKRYLTWGNDDELSIALVAFNEAIDSYNGEASFYSFAKTVISRRLIDYFRKESKHQTLSLTPLEDNNELCDYDSIKSFEIYKEKQREYDLSDTVGNFVIVLMNYGITLEDLAKASPKHRDTKETLYRVAQELCSHQNLLEYLYKNKQLPLKELELLTGVKRKTLERARKYLIATALIQSNPDLVALKDFTQLA
>NC_007907.1|WP_011461879.1|5124222_5125212_+|anti-sigma-factor-domain-containing-protein
MKKVKGIVMKTSKMTSIVYTSSGDYLKVKTPKPSPLVGQVIEVEVQSSKSFSRGFIKYGSIAAAMVLALTLSLFNIFSVPKAAVASIIMDLDTSMEIQVDKDAKILGVNESNQGSKGTPSDLNLEGIDIYKAVELIIDKANTEGAFEQKNLILTSIVPIDSKYEGIIDEDRLRNSIESYMLENDISADMMVIEINEETLQQARKSGMSVNHYQVYKRIQEQGLTTSPSLSDSNDALHMMSEANTTLESLFPHESMTITPQTKMHDDSKSMNMEEMPGSNSMSMDSNGSTSSGMMSENQHQDIDPSESMHKRDSKDREMMPSKEKMDGPR
>NC_007907.1|WP_050754244.1|5125683_5128011_-|cell-wall-binding-repeat-containing-protein
MKKNKLVFTGVFTTAYVVNLMLSPISAYAGTLDAVKATTGAQERAAIHTQPIVSPESILRLGGIDRLKQPLKSHKRGGSEPSADSENQTIAAILTAGMDENLVDALSAAPLATKLNAPMLLTENNRLNSFTESELKRLKVNTVYITTGTGVISQPVIDALKQINNEMKIFFLGGKDRFETSVNIAKEMGKFDEVVIATGESNADALSMASIAAAKGIPILLSDTERLPDAIAQYLEDNKPNIKKYYLLGGEGSLSSKVQSVLSGKTVRIAGLDRYETNQKILATFASEINDDKVYLANGDDSHLVDALTGAVLAAKTNSPVLLVGSDLSELTKDFVKLGLSPLRNVVALGGNAVVEPTLVKDMVSATVYEEDKVKVGSDNTDSPQVINDNVYVMGNSVTLENAEFKYNLYVHGNNASLKNVKVAGSIFVNPGENGTLNLDNVQAKNVYVLSGAAESIHLANSKISNLIVNGSSNVRIVSSGTTDVTNTVVSSMAILESVEGSFGTVKIEKSDDRQTVVELRGTFGKPVTVTDAAKVIAAPNANISELIVAPQSKEDIVTLQGKFNTVAVNNEALLELGHNTSVSTIEINASVNLILDATARIIEIAENGNTVTVSGNGANNIGYTGNTNSDDYTDNPGDGGDTDNTGDGGDTDNTGDGGDTDNPGDGGDTDNPGDGGDTDNPGDGGDTDNTECNIGCEENTCNTAGSEVTEPAEGAQATEENKEVTEPAEGDQATEENKEVTEPAEGTQATEDNKEVIEPAEGEEVIEGNVNYFV
>NC_007907.1|WP_011461881.1|5128110_5129451_-|(Fe-S)-binding-protein
MSEQVRIPFVAKDIKHLNLSVIPTEKRPKIALEILGEMLKYKRSLRLYLDVCTHCGACAEQCHSYLGTRDPYNMPVARADLVRRVYKKVFAPGRSIFRSWDGAKDIDQETIELWYKYFYQCNQCRRCAVFCPKGIDTAELTIAIRELLAYLGLVPRFHAGITKNMKVTGNNMGTPLPAILDGIEFLEEELKEETGLDIPIPIDKKGTEVLFNPSSSDLYTNTDGLMAVAKIFYKAGVSWTLSSKIAETANFGLFFHEPTMREHSRKLVEAGKELGVQRLVAGECGHGWRTWRMFTDTINGPLPFPIVHLFEEVLHYYREGRIKFDKSKNPEVVTYHDPCNYARAGDLIEQPRELIRACVERFVEMSPTAQYSYCCGGGSGILMDEAIEIRMKLGQPKAESVRETNAEILCAPCAICKAQLPVVMDYHKVNVTVKGLSDLMGRALIL
>NC_007907.1|WP_011461882.1|5129365_5130178_-|respiratory-nitrate-reductase-subunit-gamma
MNMNVFFGWVVPYIIFAIFLRGIVKRMLVWSHVPVPFKLTVFFGPQTMRGAYADLAKETIGFRSLWRGKKGLWFISWLFHISLASILIGHIVGIAFLGQQFTIFGVSAEQSERLSVMLGTYAGVAFLIGVMPLFIRRLVSKKMRFISNFGDYLVLILLLGIAGSGMYMRWFDNVTYLEVAIYLKGLISLHPVPPPSSVAFLLHFTLVQLLLLYFPSSKLMHSCGIFFTRWLITRPYERQVIINERTSSDSFRGKRHKAPEPISNSDREAS
>NC_007907.1|WP_041272672.1|5130438_5130927_-|hypothetical-protein
MKTKVLVGVLVLLLLGGIYFGLNAAKQAKINGTNVTSLDTSENSTTKKMTAPIIDDQEGLQVGAQWVKQEKPSSEQVFSINLNNHAINVDGFQFEGNVTVLLDDREIPIQIEVLKMEGSGHHLSAEIKVESPEFTEASPGSRLTLKVQNVYNTPTRSFTWQF
>NC_007907.1|WP_011461883.1|5131005_5131758_-|sulfite-exporter-TauE/SafE-family-protein
MSTTVLSIAFAAGVLSFLSPCIIPMLGVYFSLITGLTVSGLKDATLDTALRRRIMKNTLAFVAGFSIVFIAAGAVAGQLGSLFSQWQGVLNFLGGTMILILALKMLGFFQLPFLNRLHWEPRFFTKLREKATRSAWSSFLVGLLFSVACSHCIAPTLFSILALAGTTQTPGSGMLIMFFFSLGLSIPYVLAGMSFNKVINFLKRYRRYQVIAERVAGVLMLFIAYIIYSNQLSELTGFLGRFTPNLPLGM
>NC_007907.1|WP_050754245.1|5131978_5132209_-|SHOCT-domain-containing-protein
MMMWGYGPWGGYGWMGTLMAIVFWGLIIWLCVSLFRRNRGSHRRDDAINILRERYARGEIDSEEFDRRKEDLKRCG
>NC_007907.1|WP_148206744.1|5132284_5132515_-|SHOCT-domain-containing-protein
MQDTQKGVISMMIVSWIFLILLILYWVSDPGQPIPNAAPEKDALDVLRERYARGEIEFYEFEERRRVLQNKDCLSF
>NC_007907.1|WP_041272675.1|5132768_5133209_-|hypothetical-protein
MTKRIKLLVSGALISIAVVGLTGCSSQTNNMMNTSNMTQYMMSNPTEMVNVLSSTGARESMVKIMGSSQMMPVMLDMMGNAEVQKNMIDIMGNTQNLDNMVSIMSNETMYKPMVKIMSDPRMKEALKAMLKDPALQPLVKEVLENN

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Crispr_ID: NC_007907_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007907_8

5134221-5134320

Orphan

Consensus_repeat	Method
CCCCATCATGTTCCCACTATGCATAGCGTTCATGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007907_8

>merge|NC_007907|8|5134221-5134320|CRISPRCasFinder
CCCCATCATGTTCCCACTATGCATAGCGTTCATGTTTCCATTACTCATCATATTGGTTCCTGTCCCCATCATGTTCCCACTATGCATAGCATTCATGTTT

>NC_007907|8|8|5134221-5134320|CRISPRCasFinder
CCCCATCATGTTCCCACTATGCATAGCGTTCATGTTT	CCATTACTCATCATATTGGTTCCTGT
CCCCATCATGTTCCCACTATGCATAGCATTCATGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_007907.1\|WP_011461893.1\|5140461_5142150_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_007907.1\|WP_050754244.1\|5125683_5128011_-\|cell-wall-binding-repeat-containing-protein	unknown	unknown	gnl\|CDD\|367829
NC_007907.1\|WP_011461885.1\|5133280_5133979_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_007907.1\|WP_011461892.1\|5139287_5140115_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NC_007907.1\|WP_011461891.1\|5138739_5139048_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_050754245.1\|5131978_5132209_-\|SHOCT-domain-containing-protein	unknown	unknown	gnl\|CDD\|225993
NC_007907.1\|WP_011461879.1\|5124222_5125212_+\|anti-sigma-factor-domain-containing-protein	unknown	unknown	gnl\|CDD\|378948
NC_007907.1\|WP_041272675.1\|5132768_5133209_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_148206744.1\|5132284_5132515_-\|SHOCT-domain-containing-protein	unknown	unknown	gnl\|CDD\|225993
NC_007907.1\|WP_041272677.1\|5134928_5135867_-\|TIM44-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226830
NC_007907.1\|WP_011461889.1\|5137163_5137814_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NC_007907.1\|WP_011461882.1\|5129365_5130178_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|225092
NC_007907.1\|WP_011461881.1\|5128110_5129451_-\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NC_007907.1\|WP_041272679.1\|5143574_5145395_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|223541
NC_007907.1\|WP_050754246.1\|5136821_5137100_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378689
NC_007907.1\|WP_011461894.1\|5142414_5143410_-\|YncE-family-protein	unknown	unknown	gnl\|CDD\|225926
NC_007907.1\|WP_011461890.1\|5137845_5138649_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|376615
NC_007907.1\|WP_041272672.1\|5130438_5130927_-\|hypothetical-protein	unknown	unknown	unknown
NC_007907.1\|WP_011461888.1\|5135891_5136569_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|274372
NC_007907.1\|WP_011461883.1\|5131005_5131758_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|280792

Protein	Function_ID	Function_description	E-value
NC_007907.1\|WP_011461893.1\|5140461_5142150_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.48401e-50
NC_007907.1\|WP_050754244.1\|5125683_5128011_-\|cell-wall-binding-repeat-containing-protein	gnl\|CDD\|367829	pfam04122, CW_binding_2, Putative cell wall binding repeat 2. This repeat is found in multiple tandem copies in proteins including amidase enhancers and adhesins.	3.38477e-17
NC_007907.1\|WP_050754246.1\|5136821_5137100_-\|hypothetical-protein	gnl\|CDD\|378689	pfam11666, DUF2933, Protein of unknown function (DUF2933). This bacterial family of proteins has no known function.	0.0028406
NC_007907.1\|WP_011461892.1\|5139287_5140115_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	2.05355e-39
NC_007907.1\|WP_050754245.1\|5131978_5132209_-\|SHOCT-domain-containing-protein	gnl\|CDD\|225993	COG3462, COG3462, Predicted membrane protein [Function unknown].	1.16634e-10
NC_007907.1\|WP_011461885.1\|5133280_5133979_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.15007e-50
NC_007907.1\|WP_011461879.1\|5124222_5125212_+\|anti-sigma-factor-domain-containing-protein	gnl\|CDD\|378948	pfam12791, RsgI_N, Anti-sigma factor N-terminus. The heat shock genes in B. subtilis can be classified into several groups according to their regulation, and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes. Regulation of sigma factor I is carried out by RsgI from the same operon, and this N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) has been shown to interact directly with Sigma-I.	3.27257e-06
NC_007907.1\|WP_041272677.1\|5134928_5135867_-\|TIM44-like-domain-containing-protein	gnl\|CDD\|226830	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown].	2.60467e-11
NC_007907.1\|WP_148206744.1\|5132284_5132515_-\|SHOCT-domain-containing-protein	gnl\|CDD\|225993	COG3462, COG3462, Predicted membrane protein [Function unknown].	6.41892e-07
NC_007907.1\|WP_011461889.1\|5137163_5137814_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	3.33253e-19
NC_007907.1\|WP_011461882.1\|5129365_5130178_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|225092	COG2181, NarI, Nitrate reductase gamma subunit [Energy production and conversion].	4.17644e-24
NC_007907.1\|WP_011461881.1\|5128110_5129451_-\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.50641e-51
NC_007907.1\|WP_041272679.1\|5143574_5145395_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|223541	COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].	0
NC_007907.1\|WP_011461894.1\|5142414_5143410_-\|YncE-family-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	1.28889e-36
NC_007907.1\|WP_011461890.1\|5137845_5138649_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|376615	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.	1.25103e-75
NC_007907.1\|WP_011461888.1\|5135891_5136569_-\|PspA/IM30-family-protein	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	2.64802e-30
NC_007907.1\|WP_011461883.1\|5131005_5131758_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	7.784e-37

>NC_007907.1|WP_011461885.1|5133280_5133979_-|GGDEF-domain-containing-protein
MLKLCLFIGMIGLGIFYAWFSHLFMIPLNNNLLIHCIILGFSFGLTNFLLANFYLYKHNKLKNQNEILKSRLTTDKLTGLLNRRALDLELNSSNELIYSVIFIDIDNFRVFNNQYGHKAGDTVLRKVSETIETTIRVGDRAYRYGGEEIVIILKDCNQKNAQRIAEKIRTRIDMLSNDPYPQITISLGVASCSEESEPIQDVIEKADFALLQAKGAGKNRTIVFHPKNKINA
>NC_007907.1|WP_041272675.1|5132768_5133209_-|hypothetical-protein
MTKRIKLLVSGALISIAVVGLTGCSSQTNNMMNTSNMTQYMMSNPTEMVNVLSSTGARESMVKIMGSSQMMPVMLDMMGNAEVQKNMIDIMGNTQNLDNMVSIMSNETMYKPMVKIMSDPRMKEALKAMLKDPALQPLVKEVLENN
>NC_007907.1|WP_148206744.1|5132284_5132515_-|SHOCT-domain-containing-protein
MQDTQKGVISMMIVSWIFLILLILYWVSDPGQPIPNAAPEKDALDVLRERYARGEIEFYEFEERRRVLQNKDCLSF
>NC_007907.1|WP_050754245.1|5131978_5132209_-|SHOCT-domain-containing-protein
MMMWGYGPWGGYGWMGTLMAIVFWGLIIWLCVSLFRRNRGSHRRDDAINILRERYARGEIDSEEFDRRKEDLKRCG
>NC_007907.1|WP_011461883.1|5131005_5131758_-|sulfite-exporter-TauE/SafE-family-protein
MSTTVLSIAFAAGVLSFLSPCIIPMLGVYFSLITGLTVSGLKDATLDTALRRRIMKNTLAFVAGFSIVFIAAGAVAGQLGSLFSQWQGVLNFLGGTMILILALKMLGFFQLPFLNRLHWEPRFFTKLREKATRSAWSSFLVGLLFSVACSHCIAPTLFSILALAGTTQTPGSGMLIMFFFSLGLSIPYVLAGMSFNKVINFLKRYRRYQVIAERVAGVLMLFIAYIIYSNQLSELTGFLGRFTPNLPLGM
>NC_007907.1|WP_041272672.1|5130438_5130927_-|hypothetical-protein
MKTKVLVGVLVLLLLGGIYFGLNAAKQAKINGTNVTSLDTSENSTTKKMTAPIIDDQEGLQVGAQWVKQEKPSSEQVFSINLNNHAINVDGFQFEGNVTVLLDDREIPIQIEVLKMEGSGHHLSAEIKVESPEFTEASPGSRLTLKVQNVYNTPTRSFTWQF
>NC_007907.1|WP_011461882.1|5129365_5130178_-|respiratory-nitrate-reductase-subunit-gamma
MNMNVFFGWVVPYIIFAIFLRGIVKRMLVWSHVPVPFKLTVFFGPQTMRGAYADLAKETIGFRSLWRGKKGLWFISWLFHISLASILIGHIVGIAFLGQQFTIFGVSAEQSERLSVMLGTYAGVAFLIGVMPLFIRRLVSKKMRFISNFGDYLVLILLLGIAGSGMYMRWFDNVTYLEVAIYLKGLISLHPVPPPSSVAFLLHFTLVQLLLLYFPSSKLMHSCGIFFTRWLITRPYERQVIINERTSSDSFRGKRHKAPEPISNSDREAS
>NC_007907.1|WP_011461881.1|5128110_5129451_-|(Fe-S)-binding-protein
MSEQVRIPFVAKDIKHLNLSVIPTEKRPKIALEILGEMLKYKRSLRLYLDVCTHCGACAEQCHSYLGTRDPYNMPVARADLVRRVYKKVFAPGRSIFRSWDGAKDIDQETIELWYKYFYQCNQCRRCAVFCPKGIDTAELTIAIRELLAYLGLVPRFHAGITKNMKVTGNNMGTPLPAILDGIEFLEEELKEETGLDIPIPIDKKGTEVLFNPSSSDLYTNTDGLMAVAKIFYKAGVSWTLSSKIAETANFGLFFHEPTMREHSRKLVEAGKELGVQRLVAGECGHGWRTWRMFTDTINGPLPFPIVHLFEEVLHYYREGRIKFDKSKNPEVVTYHDPCNYARAGDLIEQPRELIRACVERFVEMSPTAQYSYCCGGGSGILMDEAIEIRMKLGQPKAESVRETNAEILCAPCAICKAQLPVVMDYHKVNVTVKGLSDLMGRALIL
>NC_007907.1|WP_050754244.1|5125683_5128011_-|cell-wall-binding-repeat-containing-protein
MKKNKLVFTGVFTTAYVVNLMLSPISAYAGTLDAVKATTGAQERAAIHTQPIVSPESILRLGGIDRLKQPLKSHKRGGSEPSADSENQTIAAILTAGMDENLVDALSAAPLATKLNAPMLLTENNRLNSFTESELKRLKVNTVYITTGTGVISQPVIDALKQINNEMKIFFLGGKDRFETSVNIAKEMGKFDEVVIATGESNADALSMASIAAAKGIPILLSDTERLPDAIAQYLEDNKPNIKKYYLLGGEGSLSSKVQSVLSGKTVRIAGLDRYETNQKILATFASEINDDKVYLANGDDSHLVDALTGAVLAAKTNSPVLLVGSDLSELTKDFVKLGLSPLRNVVALGGNAVVEPTLVKDMVSATVYEEDKVKVGSDNTDSPQVINDNVYVMGNSVTLENAEFKYNLYVHGNNASLKNVKVAGSIFVNPGENGTLNLDNVQAKNVYVLSGAAESIHLANSKISNLIVNGSSNVRIVSSGTTDVTNTVVSSMAILESVEGSFGTVKIEKSDDRQTVVELRGTFGKPVTVTDAAKVIAAPNANISELIVAPQSKEDIVTLQGKFNTVAVNNEALLELGHNTSVSTIEINASVNLILDATARIIEIAENGNTVTVSGNGANNIGYTGNTNSDDYTDNPGDGGDTDNTGDGGDTDNTGDGGDTDNPGDGGDTDNPGDGGDTDNPGDGGDTDNTECNIGCEENTCNTAGSEVTEPAEGAQATEENKEVTEPAEGDQATEENKEVTEPAEGTQATEDNKEVIEPAEGEEVIEGNVNYFV
>NC_007907.1|WP_011461879.1|5124222_5125212_+|anti-sigma-factor-domain-containing-protein
MKKVKGIVMKTSKMTSIVYTSSGDYLKVKTPKPSPLVGQVIEVEVQSSKSFSRGFIKYGSIAAAMVLALTLSLFNIFSVPKAAVASIIMDLDTSMEIQVDKDAKILGVNESNQGSKGTPSDLNLEGIDIYKAVELIIDKANTEGAFEQKNLILTSIVPIDSKYEGIIDEDRLRNSIESYMLENDISADMMVIEINEETLQQARKSGMSVNHYQVYKRIQEQGLTTSPSLSDSNDALHMMSEANTTLESLFPHESMTITPQTKMHDDSKSMNMEEMPGSNSMSMDSNGSTSSGMMSENQHQDIDPSESMHKRDSKDREMMPSKEKMDGPR
>NC_007907.1|WP_041272677.1|5134928_5135867_-|TIM44-like-domain-containing-protein
MKRWAKKMSIAITTLLIVTSQANIALARAGGGRGGSLGRSYSGGAMSGGGFSGGYSGGGLNGFAFFPFFWGGSSYGGGSFFGGLISIALILGIVYLIYIAWGSSRRTWKNQRSKGHSNYNNHNDSSPHPIDVTGKPITNAENLRRFNNAIQYTRENMRYYAESFSRWDRQFLIERVRQVFFWIQDAWTRQDLTGGENYIVSSVLQKYSLDLENMNSRGERNVIKEPVLHAEDIEFIHSYLGESSQYFVVMLRASMIDYTVDTSGKIIAGEDDNRLYFTEFWRFTWQGDQWVLSEIYQEDALEMTQIARGDRL
>NC_007907.1|WP_011461888.1|5135891_5136569_-|PspA/IM30-family-protein
MGLLNRVKDLFQANVTDILNKSEDPEKMLNFYVEKASEDVRNFQIQVNRAIADKIQLEERISNLKKEITERSEQATIAVQQGKDELARTALTLKKQAETSLADFELQLADQAKAVEELQENLRTLTEKLEKAKQERNNLVMRQRRAKTMKDANDAVSGIATQDPMANIDRMKERVERIEAEAKASTIILSTENSLEDQLADLKKDQEKSAIEDELLKLKSEVNKD
>NC_007907.1|WP_050754246.1|5136821_5137100_-|hypothetical-protein
MKCCDNEKPNVNETGNESDCQPEKKHKGFLSYMWMMVLCCGLPIAIILLIPLMGGFLSPGIRVTLLAFAPFLCMLLMIPMMFMMMRGHRDKG
>NC_007907.1|WP_011461889.1|5137163_5137814_-|isoprenylcysteine-carboxylmethyltransferase-family-protein
MFEYGYWEIVVINSLIFIIFAFSFVRPKNVTDWRVFGTFSAFIVALFTEMYGFPLTIYLLSGWLSERFPQLNLFAHDSGHLWYDLLGLSGDPHTSPIHIASTLFINGGLLFLAITWIFLYRAQRKGVVAKSGPYALIRHPQYVAFIVIMFGFLLQWPTLLTLLMFPILVIMYIKLAKIEERESIKAFGEEYVTYADDTGRFFPSLKNLRKKFTINS
>NC_007907.1|WP_011461890.1|5137845_5138649_-|prolipoprotein-diacylglyceryl-transferase
MAPILFTIGGFELRSYGVIVAIAIFIGVTVAYLLTSDKEYRDYLFDVLIYGIIGAIIGARSWQVLFYEWDYYSQNIIEIPMIWHGGLAIQGALVGAFLTAVIYTKVKKIDFWRLADIAAPGLILGQAIGRIACFLNGDAYGTPTGSNFGIIYPEGTPAYAAYGSQPLWPAEVWEGQWDFIVFAIILMLSRWRKWSQGFIFLAYIILYSVGRFGLEFLRGDSPYYLFHWTSGQWTSMGMIIVSLGFMVILKNKHKNLNQTEVSLKQSK
>NC_007907.1|WP_011461891.1|5138739_5139048_-|hypothetical-protein
MDTSENSTTKMTDPIIDDREGLQVVAQWVKQEKPSSEQVFSINFNNHAIDLDDFQFKNNINVLLGDREIPIQIEELKREGSGHHLSAEIKVESPDFTQAPPW
>NC_007907.1|WP_011461892.1|5139287_5140115_-|C40-family-peptidase
MNISFSKKWLSVAAMSGVVLGSSLYNAVPAQASTVPSSVSSELGSPFKLVESQGLDMRATRVFLGDDSFKKEIILEKKWLQQLFKEQSQLAAKKSQEPEESKSTGAKSQNIKKEVSTSPAPTRSKPAPAKAKPTSTQQQKSTAQKSSPPAVSRGAGEVEKLLNRANSLIGVPYLWGGTTPKGFDCSGFVGYVFKASGISLPRTSFDMYKVGTPVKRDELKPGDLVFFSTYTDGASDVRIYIGGNRTIGASSGGVDIRSLSESYWDKHYYGARRVL
>NC_007907.1|WP_011461893.1|5140461_5142150_-|methyl-accepting-chemotaxis-protein
MKIGFKLATVNLIFVLLIITLGGAFAFTEQKTNNSFKSLSENDYPLQVLLKDIQANVLGRGMNELSLIVTKDLMYIENIEQLSKKITTNLQEAKSLNIHTEEKVEVEKLEKDLNLYLDLSELVVQKVKENDIQGAMDIHYGQEMMAIDQLNKDVAELLDHKTEAVEESIVSIQEISKDGFILAFFISGISIIVAILSGLWLSRSIVNPLKNLTRVSSKIADGDLTLDVSSPTKARDEVQTLSQYFGTMVNHLRDVINQVQVNTEAASYTVDNLANQLEGAQAASEEMAASIEVVSGNMRRQQENIEEVVQAVQRTAEGMTNIEKMEEITLQAVHENKEQAGQGHSAIQKAMGQMENIVSQEHEMAEKVHKLVQESEQIENIVKIITGLAEQTNLLALNAAIEAARAGSHGQGFAVVAEEVRKLAEQSAQSAKEIANIGSSIRQGMQNVVEAMEVTTRVVEQGMESVKISGVGFKSILMASDQVVNTVEEVNRAIQKMSNEAQVITKSISEISTASQNVNLSTEHIKAGSQEQAISVTTISSQMRDFISILQELQGKIQQFKV
>NC_007907.1|WP_011461894.1|5142414_5143410_-|YncE-family-protein
MRIIRQNTKAVQPQTQVQVGQKVSYIYTANEGGSLSRINASTNKLIDTIKIDGSAHNVQVSPDGKIIGATIAASMEGKSSHGSMNINDLAAFYDAQTGKLINQVEVGEHPAHIVFTNDGKYALVTNNGSNSVSVIDITTFKVKGTIPTGKGPHGFRISKNNKYAYIANMGQDTVSVLDIANMKETKKIKVGKTPVTTAISNDGKTLLVTINAGDSLAVVDVESGNVQKIPVGDGPAQVYLQGNDKFAFVANQGTEEKPSNTVSKIDLSTKKVVATIETGKGSHGVVISSDDKHVYVTNMFENTVSVIDNDQNKVIATVNVDKTPNGITFVK
>NC_007907.1|WP_041272679.1|5143574_5145395_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MAKQKKPPKHLIFYYIIAMLTMLMLHAFIFPLLSEQQVTKVDYSTFLNQVESGAVSEVEIQESQIIFTTKDESEQNKKYMTGAINDPELVDRLYKAGVNFSQDIPKENSPLTNILLTWILPLIFFIGIGQLLVNQMQKRMGGMNSMTFGKSKAKIYVQAQTGKTFDDVAGQDESKEALAEIIDFLHNPKKYSEIGANLPKGALLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEMFVGMGAAKVRDLFQQANEKAPCIVFIDEIDTIGKKRDSGRGFGGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDKALLRPGRFDRRIPVELPDLKGREAILKVHAQRVKMEDSIDFNAIARATSGASGAELANIINEGALRAVKNGRSHVDQADLEESVEVVIAGYQRKGAVISQKEKEIIAYHEIGHALVAAKQTDSAPVHKITIIPRTSGTLGYTMQVEEGERVLMSKGEAFNKIATFTGGRAAEELVFGTFTSGASNDIEQATKIARAMVTRLGMSKNFDMMALETVNNPYLGADTSLTCSAETAAKIDDEVLGIIKSAHEKAISILQENIEKLHELARYLLEKETITGEEFMEILAH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	517254-517287	8	0.765
NC_007907_5	5.5\|3151580\|36\|NC_007907\|CRISPRCasFinder,PILER-CR	3151580-3151615	36	NC_004444	Pseudomonas resinovorans plasmid pCAR1, complete sequence	11679-11714	8	0.778
NC_007907_5	5.5\|3151580\|36\|NC_007907\|CRISPRCasFinder,PILER-CR	3151580-3151615	36	NC_021506	Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence	11679-11714	8	0.778
NC_007907_5	5.5\|3151580\|36\|NC_007907\|CRISPRCasFinder,PILER-CR	3151580-3151615	36	NC_011838	Pseudomonas putida plasmid pCAR1.2, complete sequence	11679-11714	8	0.778
NC_007907_5	5.13\|3152113\|36\|NC_007907\|CRISPRCasFinder,PILER-CR	3152113-3152148	36	NZ_CP013482	Pandoraea apista strain DSM 16535 plasmid pPA35, complete sequence	48235-48270	8	0.778
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP047086	Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence	92504-92538	8	0.771
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP045534	Bacillaceae bacterium C02 plasmid unnamed1, complete sequence	58853-58887	8	0.771
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_005707	Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence	43555-43589	8	0.771
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP033789	Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence	114894-114928	8	0.771
NC_007907_6	6.32\|3181238\|36\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3181238-3181273	36	NC_008607	Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence	100601-100636	8	0.778
NC_007907_6	6.44\|3182032\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3182032-3182066	35	MN693064	Marine virus AFVG_25M35, complete genome	13473-13507	8	0.771
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP038793	Escherichia coli strain PF9285 plasmid pDW54_2, complete sequence	71401-71434	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_AP017613	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_3, complete sequence	22669-22702	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NC_022996	Escherichia coli plasmid pO26-CRL-125, complete sequence	111289-111322	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NC_022992	Escherichia coli plasmid pO111-CRL-115, complete sequence	101833-101866	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	144072-144105	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	MN334219	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm32 plasmid pSTM32_108, complete sequence	93744-93777	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	MN334220	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm37 plasmid pSTM37-118, complete sequence	103794-103827	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_AP018803	Escherichia coli strain E2863 plasmid pE2863-1, complete sequence	109921-109954	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP040264	Escherichia coli strain 631 plasmid pEc631_1, complete sequence	83402-83435	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027600	Escherichia coli strain 97-3250 plasmid unnamed1, complete sequence	62554-62587	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_LT985320	Escherichia coli strain ECOR 3 genome assembly, plasmid: RCS85_pII	60599-60632	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027585	Escherichia coli strain 00-3076 plasmid unnamed, complete sequence	154757-154790	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NC_025138	Escherichia coli plasmid pH2332-107, complete sequence	78023-78056	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NC_025145	Escherichia coli plasmid pL2-87, complete sequence	53070-53103	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP013024	Escherichia coli strain 2009C-3133 plasmid unnamed1, complete sequence	22671-22704	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027451	Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence	161840-161873	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_AP019762	Escherichia coli O111:H- strain 110512 plasmid pO111-110512_1, complete sequence	104781-104814	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	MN335638	Escherichia coli strain SFE199 plasmid pSFE199, complete sequence	102734-102767	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	MN335639	Escherichia coli strain SFE059 plasmid pSFE059, complete sequence	104218-104251	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	MN335640	Escherichia coli strain OT-ESBL-0589 plasmid pOT-ESBL-0589, complete sequence	76457-76490	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_AP018797	Escherichia coli strain E2855 plasmid pE2855-1, complete sequence	110860-110893	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	CP027673	Escherichia coli strain 2014C-3003 plasmid unnamed1	43438-43471	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP028611	Escherichia coli strain 142 plasmid pTA142-2, complete sequence	74399-74432	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP031899	Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence	95441-95474	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_KM085450	Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence	4700-4733	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_KM085449	Escherichia coli O104:H7 strain RM9387 plasmid pO104_H7, complete sequence	104082-104115	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	350-383	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP009107	Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence	4700-4733	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP009105	Escherichia coli strain RM9387 plasmid pO104_H7, complete sequence	104081-104114	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP028382	Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence	13692-13725	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027383	Escherichia coli strain 2013C-3250 plasmid unnamed3	42371-42404	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027463	Escherichia coli isolate 07-4299 plasmid unnamed	76340-76373	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	980899-980932	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027441	Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence	120359-120392	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	350-383	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027370	Escherichia coli strain 2014C-3307 plasmid unnamed2	131860-131893	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027453	Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence	101841-101874	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP027372	Escherichia coli strain 2015C-3905 plasmid unnamed	125344-125377	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP028120	Escherichia coli O43 str. RM10042 plasmid pRM10042-1, complete sequence	4703-4736	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NC_007365	Escherichia coli EH41 plasmid pO113, complete sequence	13691-13724	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	404436-404469	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP023542	Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence	4704-4737	9	0.735
NC_007907_2	2.6\|3135307\|34\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3135307-3135340	34	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	350-383	9	0.735
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_KT186230	Bacillus anthracis strain P.NO2 plasmid pXO1, complete sequence	78662-78696	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP053290	Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence	212403-212437	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_014331	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence	78892-78926	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP022045	Bacillus anthracis strain FDAARGOS_341 plasmid unnamed1, complete sequence	15506-15540	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_007322	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence	78597-78631	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	85681-85715	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_012579	Bacillus anthracis str. CDC 684 plasmid pX01, complete sequence	78905-78939	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP015777	Bacillus anthracis strain Tangail-1 plasmid pXO1, complete sequence	78597-78631	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP018904	Bacillus anthracis strain Tyrol 4675 plasmid pXO1, complete sequence	78972-79006	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP023002	Bacillus anthracis strain 14RA5914 plasmid pX01, complete sequence	127392-127426	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_AP019732	Bacillus anthracis strain PCr plasmid PCr-pXO1	121735-121769	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_AP018444	Bacillus anthracis strain CZC5 plasmid pXO1, complete sequence	78682-78716	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP029324	Bacillus anthracis strain 17OD930 plasmid pXO1, complete sequence	145183-145217	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	69412-69446	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_012656	Bacillus anthracis str. A0248 plasmid pXO1, complete sequence	78861-78895	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_010934	Bacillus cereus strain G9241 plasmid pBCXO1, complete sequence	136705-136739	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP019589	Bacillus anthracis strain SPV842_15 plasmid pX01, complete sequence	78597-78631	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP010853	Bacillus anthracis strain A1144 plasmid pXO1, complete sequence	78566-78600	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP007665	Bacillus anthracis str. Vollum plasmid unnamed, complete sequence	123322-123356	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP008847	Bacillus anthracis strain HYU01 plasmid pX01, complete sequence	78940-78974	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP006743	Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence	78850-78884	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP053930	Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence	210250-210284	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP042928	Bacillus cereus strain G1-1 plasmid unnamed, complete sequence	79948-79982	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_AP014834	Bacillus anthracis strain Shikan-NIID plasmid pXO1	78681-78715	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP029806	Bacillus anthracis strain London_499 plasmid pX01, complete sequence	77572-77606	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	268087-268121	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_001496	Bacillus anthracis virulence plasmid PX01, complete sequence	78546-78580	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_017726	Bacillus anthracis str. H9401 plasmid BAP1, complete sequence	78638-78672	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	170362-170396	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP014177	Bacillus anthracis strain Stendal plasmid pXO1, complete sequence	78597-78631	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009597	Bacillus anthracis str. V770-NP-1R plasmid pXO1, complete sequence	52268-52302	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009901	Bacillus anthracis strain 2002013094 plasmid pXO1, complete sequence	49778-49812	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009340	Bacillus anthracis strain Ohio ACB plasmid 1, complete sequence	180082-180116	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009696	Bacillus anthracis strain RA3 plasmid pXO1, complete sequence	118267-118301	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009463	Bacillus anthracis strain SK-102 plasmid pXO1, complete sequence	164392-164426	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009699	Bacillus anthracis strain BA1035 plasmid pXO1, complete sequence	127168-127202	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009592	Bacillus cereus G9241 plasmid pBCX01, complete sequence	18075-18109	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP040341	Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence	223294-223328	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009543	Bacillus anthracis strain BA1015 plasmid pXO1, complete sequence	165187-165221	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP010321	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 1, complete sequence	146773-146807	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009299	Bacillus cereus D17 plasmid unnamed, complete sequence	177819-177853	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009540	Bacillus anthracis str. Sterne plasmid pXO1, complete sequence	96821-96855	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009330	Bacillus anthracis strain K3 plasmid 1, complete sequence	116473-116507	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009324	Bacillus anthracis strain PAK-1 plasmid 1, complete sequence	121465-121499	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009327	Bacillus anthracis strain Vollum 1B plasmid 1, complete sequence	122400-122434	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP001975	Bacillus anthracis str. A16R plasmid pXO1, complete sequence	78682-78716	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP009980	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed1, complete sequence	29136-29170	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP001971	Bacillus anthracis str. A16 plasmid pXO1, complete sequence	78682-78716	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NC_018492	Bacillus cereus FRI-35 plasmid p01, complete sequence	111386-111420	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP047132	Bacillus anthracis str. BF1 plasmid pXO1, complete sequence	144303-144337	9	0.743
NC_007907_6	6.18\|3180317\|35\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3180317-3180351	35	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	162334-162368	9	0.743
NC_007907_5	5.20\|3152575\|35\|NC_007907\|CRISPRCasFinder,PILER-CR	3152575-3152609	35	MN693391	Marine virus AFVG_25M447, complete genome	30582-30616	10	0.714
NC_007907_3	3.13\|3143157\|37\|NC_007907\|CRISPRCasFinder,CRT,PILER-CR	3143157-3143193	37	CP054909	Pantoea ananatis strain FDAARGOS_680 plasmid unnamed1, complete sequence	64469-64505	12	0.676

1. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 8, identity: 0.765

ctgcgccccaatccttgcccgtcttt--ttcagcag	CRISPR spacer
gcgcgccgcaatccttgccggtctttgcctcggc--	Protospacer
 .***** *********** ******  .**.**

2. spacer 5.5|3151580|36|NC_007907|CRISPRCasFinder,PILER-CR matches to NC_004444 (Pseudomonas resinovorans plasmid pCAR1, complete sequence) position: , mismatch: 8, identity: 0.778

cgaaggcacc----tttggcacagcctcgacaggacgagc	CRISPR spacer
----aacaccggcgtttggcacagccgcgacaggtcgagc	Protospacer
    ..****    ************ ******* *****

3. spacer 5.5|3151580|36|NC_007907|CRISPRCasFinder,PILER-CR matches to NC_021506 (Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3, complete sequence) position: , mismatch: 8, identity: 0.778

cgaaggcacc----tttggcacagcctcgacaggacgagc	CRISPR spacer
----aacaccggcgtttggcacagccgcgacaggtcgagc	Protospacer
    ..****    ************ ******* *****

4. spacer 5.5|3151580|36|NC_007907|CRISPRCasFinder,PILER-CR matches to NC_011838 (Pseudomonas putida plasmid pCAR1.2, complete sequence) position: , mismatch: 8, identity: 0.778

cgaaggcacc----tttggcacagcctcgacaggacgagc	CRISPR spacer
----aacaccggcgtttggcacagccgcgacaggtcgagc	Protospacer
    ..****    ************ ******* *****

5. spacer 5.13|3152113|36|NC_007907|CRISPRCasFinder,PILER-CR matches to NZ_CP013482 (Pandoraea apista strain DSM 16535 plasmid pPA35, complete sequence) position: , mismatch: 8, identity: 0.778

tggtcacgccagggataacctccccgctg----tcttggt	CRISPR spacer
tcatcacgccagggataacgtccccggtgcggatct----	Protospacer
* .**************** ****** **    ***

6. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047086 (Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence) position: , mismatch: 8, identity: 0.771

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-atacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 *. *** ***************** **** ** .

7. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045534 (Bacillaceae bacterium C02 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-atacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 *. *** ***************** **** ** .

8. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_005707 (Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence) position: , mismatch: 8, identity: 0.771

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-atacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 *. *** ***************** **** ** .

9. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033789 (Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-atacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 *. *** ***************** **** ** .

10. spacer 6.32|3181238|36|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_008607 (Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence) position: , mismatch: 8, identity: 0.778

caagccaaccctccttaagccgggggcagagaagct	CRISPR spacer
caaaaaagttctccttaaaccgggggcagaaaagct	Protospacer
***.  *...********.***********.*****

11. spacer 6.44|3182032|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to MN693064 (Marine virus AFVG_25M35, complete genome) position: , mismatch: 8, identity: 0.771

taagacttcttttcttgttttaagat-----tgttcacat	CRISPR spacer
taagacttcttttgttgttttaggatataaatttt-----	Protospacer
************* ********.***     * **

12. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038793 (Escherichia coli strain PF9285 plasmid pDW54_2, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

13. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017613 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_3, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

14. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_022996 (Escherichia coli plasmid pO26-CRL-125, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

15. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_022992 (Escherichia coli plasmid pO111-CRL-115, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

16. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

17. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to MN334219 (Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm32 plasmid pSTM32_108, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

18. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to MN334220 (Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm37 plasmid pSTM37-118, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

19. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018803 (Escherichia coli strain E2863 plasmid pE2863-1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

20. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040264 (Escherichia coli strain 631 plasmid pEc631_1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

21. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027600 (Escherichia coli strain 97-3250 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

22. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985320 (Escherichia coli strain ECOR 3 genome assembly, plasmid: RCS85_pII) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

23. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027585 (Escherichia coli strain 00-3076 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

24. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_025138 (Escherichia coli plasmid pH2332-107, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

25. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_025145 (Escherichia coli plasmid pL2-87, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

26. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013024 (Escherichia coli strain 2009C-3133 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

27. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027451 (Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

28. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019762 (Escherichia coli O111:H- strain 110512 plasmid pO111-110512_1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

29. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to MN335638 (Escherichia coli strain SFE199 plasmid pSFE199, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

30. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to MN335639 (Escherichia coli strain SFE059 plasmid pSFE059, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

31. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to MN335640 (Escherichia coli strain OT-ESBL-0589 plasmid pOT-ESBL-0589, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

32. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018797 (Escherichia coli strain E2855 plasmid pE2855-1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

33. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to CP027673 (Escherichia coli strain 2014C-3003 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccgacattttcagcag	Protospacer
  *.** . .*********** * **********

34. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028611 (Escherichia coli strain 142 plasmid pTA142-2, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

35. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031899 (Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

36. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM085450 (Escherichia coli O104:H21 strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

37. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM085449 (Escherichia coli O104:H7 strain RM9387 plasmid pO104_H7, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

38. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
gcgcgccgcaatccttgccggtctttgcctgggg	Protospacer
 .***** *********** ****** .* * .*

39. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009107 (Escherichia coli strain 94-3024 plasmid pO104_H21, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

40. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009105 (Escherichia coli strain RM9387 plasmid pO104_H7, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

41. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028382 (Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

42. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027383 (Escherichia coli strain 2013C-3250 plasmid unnamed3) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

43. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027463 (Escherichia coli isolate 07-4299 plasmid unnamed) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

44. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
gcgcgccgcaatccttgccggtctttgcctgggg	Protospacer
 .***** *********** ****** .* * .*

45. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027441 (Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

46. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
gcgcgccgcaatccttgccggtctttgcctgggg	Protospacer
 .***** *********** ****** .* * .*

47. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027370 (Escherichia coli strain 2014C-3307 plasmid unnamed2) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

48. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027453 (Escherichia coli strain 2014C-3338 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

49. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027372 (Escherichia coli strain 2015C-3905 plasmid unnamed) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

50. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028120 (Escherichia coli O43 str. RM10042 plasmid pRM10042-1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

51. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_007365 (Escherichia coli EH41 plasmid pO113, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

52. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
gcgcgccgcaatccttgccggtctttgcctgggg	Protospacer
 .***** *********** ****** .* * .*

53. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023542 (Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178 plasmid pO104_H21, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
aggtgcatggatccttgcccggcattttcagcag	Protospacer
  *.** . .*********** * **********

54. spacer 2.6|3135307|34|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgccccaatccttgcccgtctttttcagcag	CRISPR spacer
gcgcgccgcaatccttgccggtctttgcctgggg	Protospacer
 .***** *********** ****** .* * .*

55. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT186230 (Bacillus anthracis strain P.NO2 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

56. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

57. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_014331 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

58. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022045 (Bacillus anthracis strain FDAARGOS_341 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

59. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_007322 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

60. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

61. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_012579 (Bacillus anthracis str. CDC 684 plasmid pX01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

62. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015777 (Bacillus anthracis strain Tangail-1 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

63. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018904 (Bacillus anthracis strain Tyrol 4675 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

64. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023002 (Bacillus anthracis strain 14RA5914 plasmid pX01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

65. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019732 (Bacillus anthracis strain PCr plasmid PCr-pXO1) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

66. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018444 (Bacillus anthracis strain CZC5 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

67. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029324 (Bacillus anthracis strain 17OD930 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

68. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

69. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_012656 (Bacillus anthracis str. A0248 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

70. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_010934 (Bacillus cereus strain G9241 plasmid pBCXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

71. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019589 (Bacillus anthracis strain SPV842_15 plasmid pX01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

72. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010853 (Bacillus anthracis strain A1144 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

73. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007665 (Bacillus anthracis str. Vollum plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

74. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008847 (Bacillus anthracis strain HYU01 plasmid pX01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

75. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006743 (Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

76. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053930 (Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

77. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042928 (Bacillus cereus strain G1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

78. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014834 (Bacillus anthracis strain Shikan-NIID plasmid pXO1) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

79. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029806 (Bacillus anthracis strain London_499 plasmid pX01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

80. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

81. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_001496 (Bacillus anthracis virulence plasmid PX01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

82. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_017726 (Bacillus anthracis str. H9401 plasmid BAP1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

83. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

84. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014177 (Bacillus anthracis strain Stendal plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

85. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009597 (Bacillus anthracis str. V770-NP-1R plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

86. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009901 (Bacillus anthracis strain 2002013094 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

87. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009340 (Bacillus anthracis strain Ohio ACB plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

88. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009696 (Bacillus anthracis strain RA3 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

89. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009463 (Bacillus anthracis strain SK-102 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

90. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009699 (Bacillus anthracis strain BA1035 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

91. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009592 (Bacillus cereus G9241 plasmid pBCX01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

92. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040341 (Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

93. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009543 (Bacillus anthracis strain BA1015 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

94. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010321 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

95. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009299 (Bacillus cereus D17 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

96. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009540 (Bacillus anthracis str. Sterne plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

97. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009330 (Bacillus anthracis strain K3 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

98. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009324 (Bacillus anthracis strain PAK-1 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

99. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009327 (Bacillus anthracis strain Vollum 1B plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

100. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP001975 (Bacillus anthracis str. A16R plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

101. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009980 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

102. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP001971 (Bacillus anthracis str. A16 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

103. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

104. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047132 (Bacillus anthracis str. BF1 plasmid pXO1, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

105. spacer 6.18|3180317|35|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

aacccat-gaaagaaggggcagaattaaaatctcct	CRISPR spacer
-gtacatagaaagaaggggcagaatgaaaagctatg	Protospacer
 .. *** ***************** **** ** .

106. spacer 5.20|3152575|35|NC_007907|CRISPRCasFinder,PILER-CR matches to MN693391 (Marine virus AFVG_25M447, complete genome) position: , mismatch: 10, identity: 0.714

gcaatatcctttgtgtttgcattggcatcctcgaa	CRISPR spacer
gatttattgtttgtgtttgcattggcatcataacc	Protospacer
*   ***. ******************** * .

107. spacer 3.13|3143157|37|NC_007907|CRISPRCasFinder,CRT,PILER-CR matches to CP054909 (Pantoea ananatis strain FDAARGOS_680 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.676

taaggagggctttgccgatgttgatggtgtttattga	CRISPR spacer
aggggagggctttgccgttgttgctggtgaggtccgt	Protospacer
 ..************** ***** *****    ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

974181 : 994037

Acinetobacter_phage(40.0%)

integrase,transposase

attL 960890:960904|attR 992095:992109

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
960890:960904	attL	NA	NA	NA	NA
WP_158303401.1\|974181_975039_-\|integrase	tyrosine-type recombinase/integrase	S5MNZ2	Brevibacillus_phage	2.5e-50	38.7
WP_011459332.1\|975309_976500_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.7e-47	47.9
WP_041272255.1\|976569_976890_-	hypothetical protein	NA	NA	NA	NA
WP_011459333.1\|976967_978218_-	hypothetical protein	NA	NA	NA	NA
WP_041272256.1\|978368_978575_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041272259.1\|980900_981221_+	hypothetical protein	NA	NA	NA	NA
WP_158303402.1\|982197_982359_+	hypothetical protein	NA	NA	NA	NA
WP_148206707.1\|982384_983257_+	hypothetical protein	NA	NA	NA	NA
WP_041272261.1\|984002_984374_+	hypothetical protein	NA	NA	NA	NA
WP_085930657.1\|984630_985811_-\|transposase	IS3-like element ISDha7 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-45	40.0
WP_148206708.1\|986167_986761_+	hypothetical protein	NA	NA	NA	NA
WP_011459338.1\|987444_988056_+	hypothetical protein	NA	NA	NA	NA
WP_050754208.1\|988167_988374_-	hypothetical protein	NA	NA	NA	NA
WP_011459339.1\|988360_989158_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.0e-26	36.7
WP_011459340.1\|989150_990683_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_041272263.1\|990744_991257_+	hypothetical protein	NA	NA	NA	NA
WP_041272264.1\|991234_991441_+	hypothetical protein	NA	NA	NA	NA
WP_041272265.1\|991492_991672_+	hypothetical protein	NA	NA	NA	NA
WP_148206709.1\|992363_992537_+	conserved phage C-terminal domain-containing protein	NA	NA	NA	NA
992095:992109	attR	NA	NA	NA	NA
WP_148206710.1\|992850_993726_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.7e-34	36.1
WP_041272266.1\|993749_994037_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1012789 : 1041598

Bacillus_phage(42.86%)

integrase,transposase

attL 1016778:1016797|attR 1026351:1026370

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158303403.1\|1012789_1013932_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_050754209.1\|1014004_1014322_-	hypothetical protein	NA	NA	NA	NA
WP_011459362.1\|1015072_1015357_+	J domain-containing protein	NA	NA	NA	NA
WP_011458871.1\|1015529_1016774_+\|transposase	IS4-like element ISDha3 family transposase	NA	NA	NA	NA
1016778:1016797	attL	NA	NA	NA	NA
WP_011459363.1\|1016995_1017559_+\|integrase	site-specific integrase	H0USV4	Bacillus_phage	2.2e-34	49.2
WP_041272271.1\|1018592_1018838_+	hypothetical protein	NA	NA	NA	NA
WP_011459365.1\|1019110_1020304_-\|transposase	IS256-like element ISDha1 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.6e-58	38.0
WP_041272272.1\|1020876_1021389_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_041272273.1\|1021556_1022144_+	hypothetical protein	NA	NA	NA	NA
WP_158303404.1\|1022135_1022612_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_011459368.1\|1022838_1023486_+	hypothetical protein	M9Q263	Clostridium_phage	5.4e-21	38.0
WP_011459369.1\|1023582_1024971_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.1e-42	35.3
WP_011459370.1\|1024977_1025670_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-42	38.7
WP_015943229.1\|1026374_1027619_-\|transposase	IS4-like element ISDha2 family transposase	NA	NA	NA	NA
1026351:1026370	attR	NA	NA	NA	NA
WP_041272275.1\|1027815_1028199_+	NusG domain II-containing protein	NA	NA	NA	NA
WP_041272276.1\|1028930_1029545_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005808714.1\|1029734_1030982_-\|transposase	IS110-like element ISDha12 family transposase	M1NSC9	Streptococcus_phage	2.8e-58	38.5
WP_011459375.1\|1031621_1033442_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_041272277.1\|1033446_1033701_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011459377.1\|1034398_1034836_-	winged helix DNA-binding protein	NA	NA	NA	NA
WP_041272822.1\|1035966_1036719_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.7e-10	29.0
WP_041272280.1\|1036921_1038223_+	MFS transporter	NA	NA	NA	NA
WP_011459381.1\|1038600_1039935_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015943229.1\|1040353_1041598_-\|transposase	IS4-like element ISDha2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1928120 : 1939189

Staphylococcus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011459818.1\|1928120_1928678_+	GNAT family N-acetyltransferase	A0A0N9SKF6	Staphylococcus_phage	8.2e-10	25.1
WP_005811747.1\|1928957_1930076_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.1e-48	35.8
WP_011459819.1\|1930115_1930760_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.7e-40	42.7
WP_005811750.1\|1930787_1931996_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.7e-113	51.6
WP_005811752.1\|1932062_1932527_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.1e-39	53.6
WP_005811754.1\|1932665_1933286_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015944242.1\|1933369_1933633_-	hypothetical protein	NA	NA	NA	NA
WP_011459822.1\|1933721_1936316_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.0e-118	33.3
WP_011459823.1\|1936495_1938223_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	6.2e-141	46.0
WP_005811761.1\|1938307_1939189_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.1e-13	39.4

DBSCAN-SWA_4

2485461 : 2558480

102

Faecalibacterium_phage(22.58%)

head,plate,integrase,transposase,tail,terminase,portal,protease

attL 2489892:2489906|attR 2558799:2558813

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005808714.1\|2485461_2486709_+\|transposase	IS110-like element ISDha12 family transposase	M1NSC9	Streptococcus_phage	2.8e-58	38.5
WP_011460096.1\|2486826_2487378_-	hypothetical protein	NA	NA	NA	NA
WP_005811261.1\|2487414_2488083_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_005811259.1\|2488323_2489139_-	ABC transporter permease	NA	NA	NA	NA
WP_041272366.1\|2489135_2490134_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.3e-21	34.8
2489892:2489906	attL	NA	NA	NA	NA
WP_018211329.1\|2490157_2490967_-	ABC transporter permease	NA	NA	NA	NA
2489892:2489906	attL	NA	NA	NA	NA
WP_011460099.1\|2491008_2492022_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041272367.1\|2492299_2492521_+	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_041272368.1\|2492556_2492799_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_011460101.1\|2492916_2493738_+	DUF3102 domain-containing protein	NA	NA	NA	NA
WP_015944536.1\|2493766_2493943_-	hypothetical protein	NA	NA	NA	NA
WP_011460102.1\|2494163_2494829_+	hypothetical protein	NA	NA	NA	NA
WP_041272369.1\|2494981_2495563_-	hypothetical protein	NA	NA	NA	NA
WP_011460105.1\|2496469_2497117_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.3e-32	36.5
WP_011460106.1\|2497130_2497985_-	hypothetical protein	NA	NA	NA	NA
WP_011460107.1\|2497977_2498772_-	hypothetical protein	NA	NA	NA	NA
WP_041272370.1\|2498768_2499902_-	hypothetical protein	NA	NA	NA	NA
WP_011460110.1\|2501483_2501726_-	hypothetical protein	NA	NA	NA	NA
WP_011460111.1\|2501823_2502255_-	hypothetical protein	NA	NA	NA	NA
WP_011460112.1\|2502332_2503097_-	DUF4367 domain-containing protein	NA	NA	NA	NA
WP_015944541.1\|2503086_2503653_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011460114.1\|2503910_2504549_+	hypothetical protein	NA	NA	NA	NA
WP_041272371.1\|2504636_2505026_+	VOC family protein	NA	NA	NA	NA
WP_011460116.1\|2505037_2506627_-	hypothetical protein	NA	NA	NA	NA
WP_011460117.1\|2506623_2507334_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.7e-23	29.0
WP_080510906.1\|2507661_2507826_+	Fic family protein	NA	NA	NA	NA
WP_011460118.1\|2507869_2509969_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_011460119.1\|2510049_2511120_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_050754220.1\|2512038_2512251_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041272372.1\|2512442_2512655_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041272373.1\|2512690_2512879_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041272374.1\|2512993_2513209_+	hypothetical protein	NA	NA	NA	NA
WP_011460122.1\|2513186_2514365_+	cell division protein FtsK	A0A1I9S6D5	Bacillus_phage	6.6e-17	36.2
WP_011460123.1\|2514324_2514957_+	hypothetical protein	NA	NA	NA	NA
WP_041272375.1\|2514919_2515156_+	hypothetical protein	NA	NA	NA	NA
WP_041272377.1\|2515610_2516147_+	hypothetical protein	NA	NA	NA	NA
WP_011460125.1\|2516331_2517168_+	hypothetical protein	NA	NA	NA	NA
WP_041272848.1\|2517633_2518347_-	N-acetylmuramoyl-L-alanine amidase	R9TQ04	Paenibacillus_phage	1.6e-29	36.5
WP_011460128.1\|2518364_2518661_-	hypothetical protein	D2XR31	Bacillus_phage	6.0e-12	40.7
WP_041272378.1\|2518731_2519739_-\|integrase	tyrosine-type recombinase/integrase	A0A2K9VF00	Mycobacterium_phage	4.7e-16	29.5
WP_041272379.1\|2520035_2520236_-	hypothetical protein	NA	NA	NA	NA
WP_011460130.1\|2520568_2520835_-	hypothetical protein	NA	NA	NA	NA
WP_011460131.1\|2520849_2522343_-\|tail	phage tail protein	A0A0C5AEQ0	Bacteriophage	8.8e-43	56.1
WP_041272380.1\|2522345_2522906_-\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	1.1e-35	41.1
WP_041272381.1\|2522911_2524039_-\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	7.1e-69	38.2
WP_041272382.1\|2524035_2524341_-	hypothetical protein	NA	NA	NA	NA
WP_041272383.1\|2524343_2524925_-\|tail	phage tail protein	NA	NA	NA	NA
WP_041272384.1\|2524937_2525129_-	hypothetical protein	NA	NA	NA	NA
WP_011460133.1\|2525128_2526034_-	phage late control D family protein	NA	NA	NA	NA
WP_041272385.1\|2526038_2526248_-\|tail	tail protein X	NA	NA	NA	NA
WP_041272386.1\|2526240_2527833_-	hypothetical protein	A0A2H4J4V9	uncultured_Caudovirales_phage	3.6e-26	34.7
WP_041272387.1\|2527986_2528295_-	hypothetical protein	NA	NA	NA	NA
WP_050754222.1\|2528348_2528858_-\|tail	phage major tail tube protein	A0A067ZJA9	Vibrio_phage	1.4e-19	36.1
WP_011460135.1\|2528854_2530306_-	hypothetical protein	H7BVZ4	unidentified_phage	1.1e-98	41.1
WP_041272388.1\|2530321_2530843_-	hypothetical protein	NA	NA	NA	NA
2530808:2530822	attR	NA	NA	NA	NA
WP_148206721.1\|2530848_2531466_-\|tail	phage tail protein	NA	NA	NA	NA
2530808:2530822	attR	NA	NA	NA	NA
WP_011460138.1\|2531467_2531782_-	hypothetical protein	A0A2K9V2R1	Faecalibacterium_phage	3.0e-09	34.0
WP_158303413.1\|2531771_2532047_-	Rho termination factor N-terminal domain-containing protein	NA	NA	NA	NA
WP_041272390.1\|2532066_2532408_-	DUF2190 family protein	NA	NA	NA	NA
WP_041272391.1\|2532428_2533871_-	hypothetical protein	A0A2K9V304	Faecalibacterium_phage	1.8e-80	37.0
WP_080510957.1\|2533872_2534412_-\|head,protease	HK97 family phage prohead protease	A0A2K9V308	Faecalibacterium_phage	8.1e-55	63.4
WP_011460141.1\|2534461_2535886_-\|portal	phage portal protein	A0A2K9V303	Faecalibacterium_phage	2.2e-139	52.7
WP_041272393.1\|2535892_2536108_-	hypothetical protein	NA	NA	NA	NA
WP_041272394.1\|2536120_2537956_-\|terminase	phage terminase large subunit family protein	A0A2K9V301	Faecalibacterium_phage	2.9e-213	62.7
WP_050754223.1\|2537927_2538452_-	hypothetical protein	A0A2K9V327	Faecalibacterium_phage	3.4e-18	47.4
WP_011460143.1\|2538601_2539729_-\|terminase	phage terminase large subunit family protein	A0A0C5ABH4	Bacteriophage	2.8e-73	45.0
WP_041272395.1\|2539725_2539908_-	hypothetical protein	NA	NA	NA	NA
WP_011460145.1\|2540144_2540672_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_041272396.1\|2540668_2541061_-	hypothetical protein	NA	NA	NA	NA
WP_041272397.1\|2541066_2541645_-	hypothetical protein	NA	NA	NA	NA
WP_148206722.1\|2541670_2542072_-	hypothetical protein	A0A0A7RVR5	Clostridium_phage	2.3e-06	43.8
WP_041272399.1\|2542178_2542523_-	hypothetical protein	NA	NA	NA	NA
WP_011460148.1\|2542509_2543547_-	phage Gp37/Gp68 family protein	A0A0A7RVQ8	Mycobacterium_phage	7.4e-81	48.0
WP_041272400.1\|2543543_2543789_-	hypothetical protein	NA	NA	NA	NA
WP_041272401.1\|2543785_2544178_-	hypothetical protein	NA	NA	NA	NA
WP_011460150.1\|2544304_2544751_-	hypothetical protein	R9U4A4	Rhizobium_phage	3.8e-10	37.0
WP_041272402.1\|2544773_2545388_-	hypothetical protein	Q5QF30	Pseudomonas_virus	2.8e-19	33.9
WP_011460152.1\|2545390_2545903_-	Holliday junction resolvase RecU	A0A1L2JY30	Aeribacillus_phage	1.6e-44	55.7
WP_011460153.1\|2545937_2546330_-	hypothetical protein	NA	NA	NA	NA
WP_148206723.1\|2546331_2546706_-	hypothetical protein	NA	NA	NA	NA
WP_041272404.1\|2546705_2546999_-	hypothetical protein	NA	NA	NA	NA
WP_041272405.1\|2547013_2547406_-	single-stranded DNA-binding protein	S5MNH0	Brevibacillus_phage	7.2e-37	54.7
WP_011460156.1\|2547399_2548125_-	hypothetical protein	NA	NA	NA	NA
WP_011460157.1\|2548142_2549105_-	DnaD domain protein	A0A0K2CY85	Paenibacillus_phage	3.9e-28	53.1
WP_011460158.1\|2549118_2549703_-	DNA adenine methylase	A0A2H4JFS7	uncultured_Caudovirales_phage	2.5e-49	57.3
WP_011460159.1\|2549699_2550389_-	hypothetical protein	NA	NA	NA	NA
WP_148206770.1\|2550399_2550843_-	J domain-containing protein	NA	NA	NA	NA
WP_148206771.1\|2551019_2551304_-	hypothetical protein	A0A2K9V442	Faecalibacterium_phage	1.1e-07	45.5
WP_148206724.1\|2551694_2552117_-	hypothetical protein	NA	NA	NA	NA
WP_041272407.1\|2553187_2553370_-	hypothetical protein	NA	NA	NA	NA
WP_158303414.1\|2553353_2553518_-	hypothetical protein	NA	NA	NA	NA
WP_173361716.1\|2553526_2553703_-	hypothetical protein	NA	NA	NA	NA
WP_041272408.1\|2553696_2554032_-	hypothetical protein	NA	NA	NA	NA
WP_158303415.1\|2554455_2554617_+	hypothetical protein	NA	NA	NA	NA
WP_158303416.1\|2554597_2554738_-	hypothetical protein	NA	NA	NA	NA
WP_050754224.1\|2554776_2554998_+	hypothetical protein	NA	NA	NA	NA
WP_148206725.1\|2554999_2555215_-	hypothetical protein	NA	NA	NA	NA
WP_041272410.1\|2555283_2555619_-	hypothetical protein	NA	NA	NA	NA
WP_158303417.1\|2555657_2555822_-	hypothetical protein	NA	NA	NA	NA
WP_041272411.1\|2555835_2556048_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041272412.1\|2556352_2557063_+	hypothetical protein	NA	NA	NA	NA
WP_011460166.1\|2557079_2558480_+\|integrase	site-specific integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	9.1e-42	30.9
2558799:2558813	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3288086 : 3296388

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011460684.1\|3288086_3289490_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.0e-32	37.2
WP_041272485.1\|3289493_3290177_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.1e-43	40.8
WP_011460686.1\|3290179_3290998_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_005811353.1\|3291174_3291447_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
WP_015944988.1\|3291500_3292274_-	RNA polymerase sporulation sigma factor SigG	A0A0Y0AU18	Bacillus_phage	2.3e-47	42.2
WP_005811355.1\|3292332_3293082_-	RNA polymerase sporulation sigma factor SigE	A0A2H4JC68	uncultured_Caudovirales_phage	6.9e-20	43.6
WP_011460687.1\|3293081_3293987_-	sigma-E processing peptidase SpoIIGA	NA	NA	NA	NA
WP_011460688.1\|3294235_3294673_-	FMN-binding protein	A0A2P0ZL82	Lactobacillus_phage	2.3e-07	32.2
WP_148206729.1\|3294702_3296388_-	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	4.6e-24	24.9

DBSCAN-SWA_6

3709794 : 3725916

Tupanvirus(50.0%)

integrase,transposase

attL 3723695:3723727|attR 3725405:3725437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148206733.1\|3709794_3710445_+\|integrase	integrase	NA	NA	NA	NA
WP_011460980.1\|3710533_3711556_+	hypothetical protein	NA	NA	NA	NA
WP_011460982.1\|3712490_3713687_-	ATP-binding protein	NA	NA	NA	NA
WP_015945230.1\|3713956_3714169_-	hypothetical protein	NA	NA	NA	NA
WP_011460983.1\|3714172_3714640_-	VanZ family protein	NA	NA	NA	NA
WP_041272534.1\|3714658_3715651_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.8e-47	35.3
WP_041272535.1\|3715753_3716176_-	hypothetical protein	NA	NA	NA	NA
WP_011460986.1\|3717165_3718602_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_011460987.1\|3719245_3719878_+	nickel-dependent lactate racemase	NA	NA	NA	NA
WP_011460988.1\|3719962_3720316_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_080510920.1\|3720312_3720453_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_148206734.1\|3721320_3722256_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	3.2e-43	37.8
WP_011460993.1\|3722192_3722486_-\|transposase	transposase	NA	NA	NA	NA
3723695:3723727	attL	NA	NA	NA	NA
WP_158303424.1\|3723787_3724138_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_158303425.1\|3724203_3725280_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011460997.1\|3725397_3725916_-\|transposase	IS21 family transposase	NA	NA	NA	NA
3725405:3725437	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4487972 : 4499360

Prochlorococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005817232.1\|4487972_4489529_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.2e-79	53.5
WP_005817233.1\|4489581_4490181_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.8e-30	42.5
WP_011461474.1\|4490180_4491200_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FZ01	Synechococcus_phage	4.6e-75	46.5
WP_011461475.1\|4491241_4492660_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-62	35.6
WP_005817239.1\|4492678_4493395_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	7.5e-40	40.9
WP_005817240.1\|4493512_4494808_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.1e-22	30.7
WP_005817242.1\|4494961_4495456_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.0e-24	43.4
WP_041272602.1\|4495505_4499360_-	phosphoribosylformylglycinamidine synthase subunit PurQ	A6N228	Microbacterium_phage	1.7e-37	25.3

DBSCAN-SWA_8

4515159 : 4528677

Brevibacillus_phage(35.71%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015943415.1\|4515159_4515747_-	DUF2313 domain-containing protein	A0A0K2CNM8	Brevibacillus_phage	7.5e-38	44.1
WP_011461486.1\|4515739_4516819_-\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	1.9e-95	50.9
WP_005817290.1\|4516818_4517220_-	DUF2634 domain-containing protein	S6B9X2	Thermus_phage	2.0e-18	42.5
WP_005817292.1\|4517216_4517576_-	DUF2577 domain-containing protein	A0A0A7RTW1	Clostridium_phage	1.8e-26	54.9
WP_005817294.1\|4517606_4518578_-	hypothetical protein	S5MNC9	Brevibacillus_phage	2.6e-96	51.4
WP_005817296.1\|4518607_4519279_-	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	4.5e-55	48.2
WP_011461488.1\|4519308_4521042_-	hypothetical protein	A0A0A7S091	Clostridium_phage	3.0e-74	34.5
WP_005817300.1\|4521249_4521663_-	hypothetical protein	A0A0A7RTN3	Clostridium_phage	5.8e-45	61.5
WP_005817302.1\|4521815_4522283_-\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	5.2e-50	60.6
WP_005817303.1\|4522302_4523619_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7RTT5	Clostridium_phage	1.9e-121	52.1
WP_005817305.1\|4523621_4523801_-	hypothetical protein	NA	NA	NA	NA
WP_005817307.1\|4523793_4524261_-	hypothetical protein	A0A0K2CP81	Brevibacillus_phage	4.4e-25	43.7
WP_005817309.1\|4524281_4524443_-	hypothetical protein	NA	NA	NA	NA
WP_015943413.1\|4524643_4525072_-	transcriptional regulator	NA	NA	NA	NA
WP_005817313.1\|4525195_4525456_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	1.1e-06	38.2
WP_005817315.1\|4526173_4526515_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005817317.1\|4526657_4528292_-	chaperonin GroEL	A0A240F779	uncultured_virus	5.3e-166	57.3
WP_005817319.1\|4528392_4528677_-	co-chaperone GroES	A0A221S386	uncultured_virus	3.7e-19	54.7

DBSCAN-SWA_9

5145613 : 5207617

Clostridium_phage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041272302.1\|5145613_5146858_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_011461896.1\|5147469_5148327_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_041272680.1\|5148366_5148786_-	hypothetical protein	NA	NA	NA	NA
WP_011461897.1\|5149088_5149841_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_041272681.1\|5150702_5150933_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_005808714.1\|5151572_5152820_+\|transposase	IS110-like element ISDha12 family transposase	M1NSC9	Streptococcus_phage	2.8e-58	38.5
WP_011461898.1\|5152966_5154415_-	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_011461899.1\|5154581_5157284_-	SEL1-like repeat protein	NA	NA	NA	NA
WP_041272682.1\|5157286_5157706_-	hypothetical protein	NA	NA	NA	NA
WP_041272683.1\|5157683_5157941_-	hypothetical protein	NA	NA	NA	NA
WP_173361736.1\|5158326_5158500_-	hypothetical protein	NA	NA	NA	NA
WP_041272684.1\|5158600_5158894_-	hypothetical protein	NA	NA	NA	NA
WP_011461902.1\|5158898_5159780_-	ParM/StbA family protein	NA	NA	NA	NA
WP_041272685.1\|5159810_5160170_-	hypothetical protein	NA	NA	NA	NA
WP_041272686.1\|5160326_5160611_-	hypothetical protein	NA	NA	NA	NA
WP_041272687.1\|5160731_5161757_-	M23 family metallopeptidase	I2E8W3	Clostridium_phage	3.8e-21	42.0
WP_011461906.1\|5161763_5162267_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_011461907.1\|5162287_5163340_-	amidoligase family protein	A0A1B1IUD7	uncultured_Mediterranean_phage	6.4e-64	44.0
WP_011461908.1\|5163635_5165465_-	type VI secretion protein	NA	NA	NA	NA
WP_041272688.1\|5165642_5166818_+	hypothetical protein	NA	NA	NA	NA
WP_041272690.1\|5167234_5167825_-	hypothetical protein	NA	NA	NA	NA
WP_041272691.1\|5167821_5168094_-	hypothetical protein	NA	NA	NA	NA
WP_041272932.1\|5168180_5169086_-	hypothetical protein	NA	NA	NA	NA
WP_041272692.1\|5169202_5170612_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.9e-36	31.1
WP_050754247.1\|5171161_5171617_+	hypothetical protein	NA	NA	NA	NA
WP_011461915.1\|5171959_5173777_-	maturase	A0A0U4J920	Pseudomonas_phage	1.8e-34	33.7
WP_080510943.1\|5174352_5174607_-	DUF3852 family protein	NA	NA	NA	NA
WP_041272693.1\|5174690_5176424_-	hypothetical protein	NA	NA	NA	NA
WP_041272694.1\|5176497_5177049_-	hypothetical protein	NA	NA	NA	NA
WP_011461918.1\|5177140_5177692_-	hypothetical protein	NA	NA	NA	NA
WP_041272935.1\|5177688_5178084_-	DUF4320 family protein	NA	NA	NA	NA
WP_148206779.1\|5178195_5179065_-	secretion protein F	NA	NA	NA	NA
WP_041272696.1\|5179073_5180003_-	membrane protein	NA	NA	NA	NA
WP_041272697.1\|5179999_5181430_-	type II/IV secretion system ATPase subunit	NA	NA	NA	NA
WP_041272698.1\|5181426_5182239_-	AAA family ATPase	NA	NA	NA	NA
WP_011461926.1\|5182240_5183074_-	Flp pilus assembly protein CpaB	NA	NA	NA	NA
WP_041272699.1\|5183088_5183514_-	prepilin peptidase	NA	NA	NA	NA
WP_041272700.1\|5183503_5183734_-	hypothetical protein	NA	NA	NA	NA
WP_173361737.1\|5183769_5184129_-	hypothetical protein	NA	NA	NA	NA
WP_041272702.1\|5184188_5184401_-	hypothetical protein	NA	NA	NA	NA
WP_041272703.1\|5184443_5184854_-	septation protein SpoVG family protein	I3PV82	Clostridium_phage	1.8e-06	34.7
WP_041272704.1\|5184911_5185472_-	hypothetical protein	NA	NA	NA	NA
WP_011461930.1\|5185509_5189547_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_041272705.1\|5189638_5190226_-	hypothetical protein	NA	NA	NA	NA
WP_041272706.1\|5190218_5190512_-	hypothetical protein	NA	NA	NA	NA
WP_041272707.1\|5190508_5190931_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011461933.1\|5190968_5191904_-	DNA adenine methylase	A0A2H4IYF4	uncultured_Caudovirales_phage	5.3e-54	40.4
WP_041272708.1\|5191908_5192112_-	hypothetical protein	NA	NA	NA	NA
WP_041272709.1\|5192292_5192619_-	hypothetical protein	NA	NA	NA	NA
WP_041272710.1\|5192619_5193141_-	hypothetical protein	NA	NA	NA	NA
WP_041272711.1\|5193266_5194682_-	group II intron reverse transcriptase/maturase	H7BVG5	unidentified_phage	1.1e-18	26.5
WP_041272712.1\|5195169_5195904_-	hypothetical protein	NA	NA	NA	NA
WP_041272713.1\|5196401_5197085_-	hypothetical protein	NA	NA	NA	NA
WP_011461938.1\|5197233_5197527_-	hypothetical protein	NA	NA	NA	NA
WP_148206746.1\|5197819_5199387_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011461940.1\|5199540_5200557_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_148206747.1\|5200684_5201883_-\|transposase	IS3-like element ISDha6 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-53	38.8
WP_011461945.1\|5205076_5205943_+	TIR domain-containing protein	NA	NA	NA	NA
WP_158303428.1\|5206012_5206189_+	hypothetical protein	NA	NA	NA	NA
WP_148206747.1\|5206419_5207617_+\|transposase	IS3-like element ISDha6 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-53	38.8

DBSCAN-SWA_10

5591928 : 5598402

Paenibacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005815457.1\|5591928_5592399_-	ImmA/IrrE family metallo-endopeptidase	A0A2I7SC21	Paenibacillus_phage	9.9e-33	47.7
WP_041272790.1\|5592966_5593263_+	hypothetical protein	D2XR31	Bacillus_phage	7.4e-10	37.4
WP_011462238.1\|5593265_5593976_+	N-acetylmuramoyl-L-alanine amidase	R9TQ04	Paenibacillus_phage	1.8e-25	38.3
WP_011462239.1\|5593989_5594352_+	hypothetical protein	NA	NA	NA	NA
WP_011462240.1\|5594431_5595622_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	8.4e-20	26.8
WP_005815410.1\|5596042_5596510_-	dCMP deaminase family protein	G3MA58	Bacillus_virus	9.5e-28	42.7
WP_005815407.1\|5596506_5597136_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_026199036.1\|5597148_5598402_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	7.0e-102	56.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007907

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection