CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010610	Lactobacillus fermentum IFO 3956, complete genome	5 crisprs	cas14j,cas3,DEDDh,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,DinG,cas4,cas8c	1	39	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010610_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010610_1

285836-285924

TypeV

Consensus_repeat	Method
GAGCCTCCAGCGGGTGAATGGGATGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010610_1

>merge|NC_010610|1|285836-285924|CRISPRCasFinder
GAGCCTCCAGCGGGTGAATGGGATGGTGTTAACCTTAGCATTTCCTAGTATTCGGTTTGCAGAGCCTCCAGCGGGTGAATGGGATGGTG

>NC_010610|1|1|285836-285924|CRISPRCasFinder
GAGCCTCCAGCGGGTGAATGGGATGGTG	TTAACCTTAGCATTTCCTAGTATTCGGTTTGCA
GAGCCTCCAGCGGGTGAATGGGATGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010610.1\|WP_012390810.1\|289236_290061_-\|bifunctional-DNA-primase/polymerase	unknown	unknown	gnl\|CDD\|240129
NC_010610.1\|WP_080503615.1\|283138_283453_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379090
NC_010610.1\|WP_158297481.1\|290397_290547_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_024500685.1\|290997_291183_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_010610.1\|WP_012390807.1\|281847_282612_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|313663
NC_010610.1\|WP_003686497.1\|271366_272860_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NC_010610.1\|WP_041807663.1\|284747_285116_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273725
NC_010610.1\|WP_041807672.1\|290073_290277_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_041807667.1\|286073_286583_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_003684059.1\|270349_271351_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NC_010610.1\|WP_144039600.1\|286597_286933_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_041807661.1\|282797_283127_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379084
NC_010610.1\|WP_021815629.1\|280135_280648_+\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_012390811.1\|290719_290986_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_010610.1\|WP_050724098.1\|286946_287297_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_041807670.1\|287601_289182_-\|DNA-primase	unknown	unknown	gnl\|CDD\|225913
NC_010610.1\|WP_012390806.1\|269379_270261_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NC_010610.1\|WP_141344428.1\|280806_281127_+\|methylase	unknown	unknown	unknown
NC_010610.1\|WP_041807665.1\|285331_285544_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_012390812.1\|291299_292412_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NC_010610.1\|WP_012390810.1\|289236_290061_-\|bifunctional-DNA-primase/polymerase	gnl\|CDD\|240129	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the archaeal/eukaryal primase (AEP) superfamily. This group includes archaeal plasmids and bacteriophage AEPs. The ORF904 protein is a multifunctional protein having ATPase, primase and DNA polymerase activity, and may play a role in the replication of the archaeal plasmid. The pRN1 primpol domain exhibits DNA polymerase and primase activities; a cluster of active site residues (three acidic residues, and a histidine) is required for both these activities. For pRN1 primpol, the primase activity prefers dNTPs to rNTPs; incorporation of dNTPs requires rNTP as cofactor. The pRN1 primpol contains an unusual zinc-binding stem, which is not conserved in other members of this group.	4.19493e-28
NC_010610.1\|WP_080503615.1\|283138_283453_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379090	pfam13248, zf-ribbon_3, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	1.67669e-07
NC_010610.1\|WP_024500685.1\|290997_291183_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.01897e-07
NC_010610.1\|WP_003686497.1\|271366_272860_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NC_010610.1\|WP_041807663.1\|284747_285116_-\|hypothetical-protein	gnl\|CDD\|273725	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions].	0.000207693
NC_010610.1\|WP_012390807.1\|281847_282612_+\|hypothetical-protein	gnl\|CDD\|313663	pfam10479, FSA_C, Fragile site-associated protein C-terminus. This is the conserved C-terminal half of the protein KIAA1109 which is the fragile site-associated protein FSA. Genome-wide-association studies showed this protein to linked to the susceptibility to coeliac disease. The protein may also be associated with polycystic kidney disease.	0.000978277
NC_010610.1\|WP_003684059.1\|270349_271351_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.39692e-126
NC_010610.1\|WP_041807661.1\|282797_283127_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	0.000301283
NC_010610.1\|WP_012390806.1\|269379_270261_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	2.85002e-151
NC_010610.1\|WP_041807670.1\|287601_289182_-\|DNA-primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	7.39683e-66
NC_010610.1\|WP_012390811.1\|290719_290986_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.03126e-09
NC_010610.1\|WP_012390812.1\|291299_292412_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.69886e-12

>NC_010610.1|WP_041807665.1|285331_285544_-|hypothetical-protein
MSRANCPIQNRIGDGRKIAPVIDELKIELVIEEPNSGLLIEQLKVEQFTEGRRIALSPSRIAIQSEFKPP
>NC_010610.1|WP_041807663.1|284747_285116_-|hypothetical-protein
MQLKIKDFLTKYGFNGFWIGYQRLNMINRIAKDYRDVCNDQESRILLALYDETVAGLDQLPEVERTIITRQYIEGEYQPIVRDELGLKSSAYYRRQIKARRHLADALNEAPTFQRLDVTFTP
>NC_010610.1|WP_080503615.1|283138_283453_+|zinc-ribbon-domain-containing-protein
MKYCPNCGNQVDPKAVICPHCGIPLPSSSSFSTPATTTGDTGSAWWGVLGFFVPVAGLVLYIVWHNSEPKNAKSAGIGALIQVGVSIAFFIFCFFIILAADLSD
>NC_010610.1|WP_041807661.1|282797_283127_+|zinc-ribbon-domain-containing-protein
MNNQSNVTPQNDNTQYKFCQNCGAKIDVKAVVCPKCGVPVNGNNAESNPEDRNSGWWNLLGFLFPIVGWVLWAVWRKEYPQRAHGVCVWAWVSFVISLVIDFWGFLCTL
>NC_010610.1|WP_012390807.1|281847_282612_+|hypothetical-protein
MKKLRSFYKVLIALLVLLFVEFGVLLVSLSLADRGSKQTDTNSTNAENSSLKAKNSSLKAKKNSEKQAKYSNQEYALMAYLKLQGQTANELKQNKDNMNWKQDNNKFTIDFGAHATLMTVTDKQVQLTYDKSTEEGMGQGNGHKVYTKQELAEEFGNQKSTLDEILDTVNENSNNSSNTQSSAQNNQSQNNTANQANNTTYSSSTTGNTTTTTTGTTTGNTTATTTGNTTTTTTGNTTSNSDQDATTTNGGTTD
>NC_010610.1|WP_141344428.1|280806_281127_+|methylase
MKSDYQYSARVVYNNFVWPAPNKEAKKRIERTAEDIIAARRLDSSASLADLYDPDNFKNFEVELHKAHKANDDAVLKAYGLSPKATEQEIIQHLFKMYEKMTGEKK
>NC_010610.1|WP_021815629.1|280135_280648_+|hypothetical-protein
MKKLRSFYKVLIALLVLLFVEFGVVIITNNLSTSSNGKIASSSSSTYSDENGGNDYNNQYSQSTKKVDPIGMWKDDDDGAALSFNDNGTGRYVYADPTNSDTDDHFTWDYVGGNEYKVKLDDPDVSGDLTATFHDDGTMTLSGGSDWNTETFRQASPNLDLDEFLEQHDN
>NC_010610.1|WP_003686497.1|271366_272860_+|lysine--tRNA-ligase
MANEEHLNDQMVVRREKMQALRDQGVAPFGHRFDPDHDLSTDIRKKYENDSGELLLAQHNVVTIAGRMIGKRGSGKASFADLLDRGGKIQFYVRQDMVGEEAYKLFKESDLGDFWGITGDVIKTRMGELTVRAEKITFLSKALRPLPDKYHGLQDPELVYRQRYLDLITNRESFERFQTRTKIIKAVRRYMDDNGFLEVETPILENIASGAEARPFVTHHNALNIDMYMRIATELRLKRLIVGGMERVYELGRIFRNEGMDPYHNPEFDTMETYAAYFDFNDVMKETEGIFKAAAGVVADDLKITYQGTELDFSTSFKRLHMVDAIKEATGIDFWQEMTVEEARKLADDNGIKYESWWKVGHIINAFFEEKVQDTLEQPIFIYGHPVEVSPLAKINEEDSRFTDRFELYILGKEYANAFSELNDPIDQRKRFEAQAQENAEGNDEAQPIDEDFVEALEYGMPPTGGLGVGIDRMVMLMTDAKSIRDVLLFPTMRPKK
>NC_010610.1|WP_003684059.1|270349_271351_+|tRNA-dihydrouridine-synthase-DusB
MEWKIGSVTIPNQVVVAPMAGVMNTAFRVICKKFGAGYVVSEMISDRGIMYHNKKTLQMMGVDPVEHPMGLQIFGGTKETLVEAAKFVDENTDADVIDINMGCPVNKIVNTEAGSRWLLDPNKVYEMVSYVTDAVKKPVTVKMRTGWDDQHIFAVENALAAQRAGAAAVAMHGRTRKQMYRGHADWDILKEVASQLTIPFMANGDIKTAEEAKYVLEYTGADAIMIGRAAMGNPWMLTQTVHYLENGELLPEATPEEKITTAKEHLARLVDLKGEYAGVREFRGQAAYYMKGIPRAARTKVALMEATEQAQMDEIFDRFIDQYEERQLQQNVN
>NC_010610.1|WP_012390806.1|269379_270261_+|Hsp33-family-molecular-chaperone-HslO
MEDYLVKSVAENGQFRAYAVNATALVEEAHQIHDTWSAASAALGRAMVGTLLLATSGLQGEAGMTVKIQGDGPVGFIVVDGTAQGTVKAYMQNPHVHLPLNAKGKIDVAGAVGKTGTLSVTKMAPGDKTPYTGEVNLVSGELGDDFTYYLAQSEQIPSAVGLSVFVQSDDHIEVAGGFLIQVLPGASDEAINHLETTLRELPLVSDLLREGKTPEQILETIFAGRDLKILEKMPVEYKCDCSKDRFEKALASLSKDDLQEMIDNDHGAEAVCRFCGHKYHFSEEELKYLVATK
>NC_010610.1|WP_041807667.1|286073_286583_-|hypothetical-protein
MKYEQILAILDEWIATYEQEFDYLWVQGRMKVLDKSIKDRREKLDKTFIKIPFTGKRLFDDIGVLPGHKWIPTALMEDAKEVTKYNRLLEQAKRMVTDLIETQSALIPEVEQLAREIDNLPESEIDHRLTDRTSRIASYMSSTQAQRRAIDNITNEPKKRITWWKVGAK
>NC_010610.1|WP_144039600.1|286597_286933_-|hypothetical-protein
MTEQELVGLKYLEMLRLMVVVKNLEQSIPELVDEITYIAHDSSEYQVKVDLLTESYSNYQIFTDQIIKDRNECYQEAKEIMTSHRWDEVVSPDLAYNICDAGLMLAEALKE
>NC_010610.1|WP_050724098.1|286946_287297_-|hypothetical-protein
MLNSDEKKIIKAIPEGADYPRAMREVARLVGLDARTVRAIVHDLNVKGYPIGASRHQPAGYFWATSDDELELALRPIASQTREIQRRLAGLRRAKAISKDEVLAEPTADDKKAKEA
>NC_010610.1|WP_041807670.1|287601_289182_-|DNA-primase
MPVKSIPQDAQNAIDEMVKRRQNAQPKSFDEQLELLTAWGQQYRKENTRTVHYQDGTESVTTKRMPARMIADRIEAVASIAKLGETDRELESAPLVLYVPDRGIYTHSTARVRRMILALEPACTIKSRNEVEWLLDGEATAKAPESSPSLIPVGNGIYNTDSGEFQPFTPEIVFTSKIATNYNPNATEPSFNGWKFSDWVNELAQGDKTKQTLIWQMIASIVKNRDTANVFFAFVDNGQGRTGKSTLEQLLMNLVGKDNYTSLKLDEFGHDFKLANAYGARLIIGDDNEPKGFIDDGSNLKSIVTNETVLLNPKGAKPFTAKFFATVVQSMNGVPTFRDKSGGLYRRFRMLNFPKQYPDTPAGKRIKNDYIYDRQLLEWILKKALEVDVTTIIDTKESQELVYDTRLDNDPVLYFVEEVVGQLKSIRLPTSFLFNLFCAFMKSENSPTKLKQRSFTKQVRPYMEDKGWKYDNKSLTASKYFNQDDMQLVHQFDDLVGTNYPRLAEQEVRTRKGIFYRDDKAVKNRP
>NC_010610.1|WP_012390810.1|289236_290061_-|bifunctional-DNA-primase/polymerase
MGAKRRALQLAQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRWSDDWGLGIDLFTAGIVVLDLDRPGTTTDGKAVHGGKDGVKALKIYLEQHQRQLPHPMYAEQTPHGGLHLFFKLDQPLERPTRKTNALPGVDILGDFVIASPSEVDGSPYLVMQDQTQPVSIHDTATAPQWIVGLLTAPQTAFNPAKTNSLMKGQKTYTGRLFDKIAQGADEGERNNWLASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKSVCKYH
>NC_010610.1|WP_041807672.1|290073_290277_-|hypothetical-protein
MNHRSTVITIGKRRPVMTPSIHRELVRTYWNHRQLVKRYQAGHLSAVMLLLRDRLGIAHNITYINQH
>NC_010610.1|WP_158297481.1|290397_290547_-|hypothetical-protein
MEALETAIWTAGLFLFVMIGMGWLAIAILPMYLLWIAWNLEQYVKENGH
>NC_010610.1|WP_012390811.1|290719_290986_-|helix-turn-helix-domain-containing-protein
MEIKLQLPDEFAGMIAKCLADQLEQQTPHPQMEADAWLNKGQTSEYLGVSRVFLDKLIKSQSLPCKRIGTRSYRFKKADLDDWLRSQQ
>NC_010610.1|WP_024500685.1|290997_291183_-|helix-turn-helix-domain-containing-protein
MSEYLTYKEACEILHLKSYKGLYYLIKNGLPVIVIGNSKRISANDLKKFMEDHTVTTAPKD
>NC_010610.1|WP_012390812.1|291299_292412_+|helix-turn-helix-transcriptional-regulator
MANVDFTFEGYLDMKKRITDLDMKITDLDMKNRITELREEKGLSMRKLSKSLKEKGLSLSTDSLSKYERGVRNPKIENWEKLAEFFKVPVDYLEGRGWSQDDVVEVLLFVIANRYHGFFDGPFYVEVDNGKVFKYGFDKVDLYSVDLKDLPGYKEKMKEYLKKQVTIDENEKGRKVTHSDDYLQDDYYDDYFDELVGVYAPNDEVVRQSLIDEIDNPTIDLASVLGGLLPGDEIRKIETAYIEFDFEDKLLEELHSRNETFFAFKKILLDNIKSLSDYAFLASIGEGWGMQPSPEYVIAKRLSDELQEKKFDSKMASFKVDPYKASKKNIDAMSVTSNDHELLFEIVAYLLDENKELKKRVDQLENKLPK

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Crispr_ID: NC_010610_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010610_2

816914-818164

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCATGTATGTGGGGGTGATCC	PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCCT	CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	CRT

20 spacers

cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NC_010610_2

>merge|NC_010610|2|816914-818164|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCATGTATGTGGGGGTGATCCTTAAAGGAGAATACTATGATCAACAAAAAAATTGTATTCCCCATGTATGTGGGGGTGATCCTTTTTGCAGGGTTCGCTAGTGATGGCAAAGGTGGTATTCCCCATGTATGTGGGGGTGATCCTATCAGCTTGTGCTGCACTTGCCGATGATTTAGGTATTCCCCATGTATGTGGGGGTGATCCTGATATGATCTACGATCAGGGAACCTATGCTTCGTATTCCCCATGTATGTGGGGGTGATCCCATCTTGCCTACGATTGACACCTCAACCGGTGAGTATTCCCCATGTATGTGGGGGTGATCCTAGGGACACAAGATAACCTTGCCGAGATAATGAGTATTCCCCATGTATGTGGGGGTGATCCTCGTGTTTCAAGATCCGTCCCGAGCTTGTTTTGGTATTCCCCATGTATGTGGGGGTGATCCTTTAATAGCAATAGTCTACCGTATTAGGAGAAGGTATTCCCCATGTATGTGGGGGTGATCCTACACAATAAGCGTTAATACTAAAAATAACGGTGTATTCCCCATGTATGTGGGGGTGATCCTCCCGGTTTCTGTATCTACTCCAACTTCATCGAGTATTCCCCATGTATGTGGGGGTGATCCTTTGTTATATGAGTAACCGCACTTAGCATTAGCGTATTCCCCATGTATGTGGGGGTGATCCTTAAATACTTAAACTACAAGGTCGATGAAAAAGGTATTCCCCATGTATGTGGGGGTGATCCCCAGATAAGATGACGATCATCACGACCAACAACGTATTCCCCATGTATGTGGGGGTGATCCTAGGTGGCAATAGGCCATCCCCAGGGGTCTCCCGTATTCCCCATGTATGTGGGGGTGATCCTTATAGTCGGCCACTGAATGGACTTCCGCATCAGTATTCCCCATGTATGTGGGGGTGATCCTATTGGGAGAAGCTGTTTGGCCCACTTGATCCAAGTATTCCCCATGTATGTGGGGGTGATCCTTTCCAGTCGTGGAATCGATGCTGACCGTCGGTGTATTCCCCATGTATGTGGGGGTGATCCCCAACAAAGCGGCAATCAACAGCAAGGACCAGCGTATTCCCCATGTATGTGGGGGTGATCCTATGCAAGAGTGGCTTTATCAAGTCGCCAATGCGTATTCCCCATGTATGTGGGGGTGATCCTTATTTGTAAACCATCACTGCGTTTACCGCTGTGTATTCCCCATGTATGTGGGGGTGATCCCC

>NC_010610|2|1|816914-818162|PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAAGGAGAATACTATGATCAACAAAAAAATT
GTATTCCCCATGTATGTGGGGGTGATCC	TTTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG
GTATTCCCCATGTATGTGGGGGTGATCC	TATCAGCTTGTGCTGCACTTGCCGATGATTTAG
GTATTCCCCATGTATGTGGGGGTGATCC	TGATATGATCTACGATCAGGGAACCTATGCTTC
GTATTCCCCATGTATGTGGGGGTGATCC	CATCTTGCCTACGATTGACACCTCAACCGGTGA
GTATTCCCCATGTATGTGGGGGTGATCC	TAGGGACACAAGATAACCTTGCCGAGATAATGA
GTATTCCCCATGTATGTGGGGGTGATCC	TCGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG
GTATTCCCCATGTATGTGGGGGTGATCC	TTTAATAGCAATAGTCTACCGTATTAGGAGAAG
GTATTCCCCATGTATGTGGGGGTGATCC	TACACAATAAGCGTTAATACTAAAAATAACGGT
GTATTCCCCATGTATGTGGGGGTGATCC	TCCCGGTTTCTGTATCTACTCCAACTTCATCGA
GTATTCCCCATGTATGTGGGGGTGATCC	TTTGTTATATGAGTAACCGCACTTAGCATTAGC
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAATACTTAAACTACAAGGTCGATGAAAAAG
GTATTCCCCATGTATGTGGGGGTGATCC	CCAGATAAGATGACGATCATCACGACCAACAAC
GTATTCCCCATGTATGTGGGGGTGATCC	TAGGTGGCAATAGGCCATCCCCAGGGGTCTCCC
GTATTCCCCATGTATGTGGGGGTGATCC	TTATAGTCGGCCACTGAATGGACTTCCGCATCA
GTATTCCCCATGTATGTGGGGGTGATCC	TATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA
GTATTCCCCATGTATGTGGGGGTGATCC	TTTCCAGTCGTGGAATCGATGCTGACCGTCGGT
GTATTCCCCATGTATGTGGGGGTGATCC	CCAACAAAGCGGCAATCAACAGCAAGGACCAGC
GTATTCCCCATGTATGTGGGGGTGATCC	TATGCAAGAGTGGCTTTATCAAGTCGCCAATGC
GTATTCCCCATGTATGTGGGGGTGATCC	TTATTTGTAAACCATCACTGCGTTTACCGCTGT
GTATTCCCCATGTATGTGGGGGTGATCC

>NC_010610|2|2|816914-818164|CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAAGGAGAATACTATGATCAACAAAAAAATT
GTATTCCCCATGTATGTGGGGGTGATCCT	TTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATCAGCTTGTGCTGCACTTGCCGATGATTTAG
GTATTCCCCATGTATGTGGGGGTGATCCT	GATATGATCTACGATCAGGGAACCTATGCTTC
GTATTCCCCATGTATGTGGGGGTGATCCC	ATCTTGCCTACGATTGACACCTCAACCGGTGA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGGACACAAGATAACCTTGCCGAGATAATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	TTAATAGCAATAGTCTACCGTATTAGGAGAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACACAATAAGCGTTAATACTAAAAATAACGGT
GTATTCCCCATGTATGTGGGGGTGATCCT	CCCGGTTTCTGTATCTACTCCAACTTCATCGA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTGTTATATGAGTAACCGCACTTAGCATTAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAATACTTAAACTACAAGGTCGATGAAAAAG
GTATTCCCCATGTATGTGGGGGTGATCCC	CAGATAAGATGACGATCATCACGACCAACAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGTGGCAATAGGCCATCCCCAGGGGTCTCCC
GTATTCCCCATGTATGTGGGGGTGATCCT	TATAGTCGGCCACTGAATGGACTTCCGCATCA
GTATTCCCCATGTATGTGGGGGTGATCCT	ATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTCCAGTCGTGGAATCGATGCTGACCGTCGGT
GTATTCCCCATGTATGTGGGGGTGATCCC	CAACAAAGCGGCAATCAACAGCAAGGACCAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGCAAGAGTGGCTTTATCAAGTCGCCAATGC
GTATTCCCCATGTATGTGGGGGTGATCCT	TATTTGTAAACCATCACTGCGTTTACCGCTGT
GTATTCCCCATGTATGTGGGGGTGATCCCC

>NC_010610|2|1|816914-818163|CRT
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAAGGAGAATACTATGATCAACAAAAAAATT
GTATTCCCCATGTATGTGGGGGTGATCCT	TTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATCAGCTTGTGCTGCACTTGCCGATGATTTAG
GTATTCCCCATGTATGTGGGGGTGATCCT	GATATGATCTACGATCAGGGAACCTATGCTTC
GTATTCCCCATGTATGTGGGGGTGATCCC	ATCTTGCCTACGATTGACACCTCAACCGGTGA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGGACACAAGATAACCTTGCCGAGATAATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	TTAATAGCAATAGTCTACCGTATTAGGAGAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACACAATAAGCGTTAATACTAAAAATAACGGT
GTATTCCCCATGTATGTGGGGGTGATCCT	CCCGGTTTCTGTATCTACTCCAACTTCATCGA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTGTTATATGAGTAACCGCACTTAGCATTAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAATACTTAAACTACAAGGTCGATGAAAAAG
GTATTCCCCATGTATGTGGGGGTGATCCC	CAGATAAGATGACGATCATCACGACCAACAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGTGGCAATAGGCCATCCCCAGGGGTCTCCC
GTATTCCCCATGTATGTGGGGGTGATCCT	TATAGTCGGCCACTGAATGGACTTCCGCATCA
GTATTCCCCATGTATGTGGGGGTGATCCT	ATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTCCAGTCGTGGAATCGATGCTGACCGTCGGT
GTATTCCCCATGTATGTGGGGGTGATCCC	CAACAAAGCGGCAATCAACAGCAAGGACCAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGCAAGAGTGGCTTTATCAAGTCGCCAATGC
GTATTCCCCATGTATGTGGGGGTGATCCT	TATTTGTAAACCATCACTGCGTTTACCGCTGT
GTATTCCCCATGTATGTGGGGGTGATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010610.1\|WP_041807739.1\|822806_823169_+\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_117939520.1\|823980_824931_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_010610.1\|WP_008211256.1\|825046_825367_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_012391056.1\|807927_809115_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_010610.1\|WP_012391080.1\|813855_814797_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_010610.1\|WP_012391086.1\|828164_828854_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NC_010610.1\|WP_012391087.1\|829092_830262_+\|hydroxymethylglutaryl-CoA-synthase	unknown	unknown	gnl\|CDD\|213655
NC_010610.1\|WP_012390709.1\|815612_816629_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_010610.1\|WP_031265251.1\|813200_813842_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NC_010610.1\|WP_012391076.1\|810792_811386_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_010610.1\|WP_012391635.1\|823363_824056_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NC_010610.1\|WP_012391078.1\|812475_813183_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NC_010610.1\|WP_012391074.1\|805002_807726_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_010610.1\|WP_012391081.1\|818215_819436_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_010610.1\|WP_012391077.1\|811412_812495_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_010610.1\|WP_008211252.1\|826740_828075_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|129987
NC_010610.1\|WP_041807736.1\|803259_803547_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_010610.1\|WP_012391073.1\|803570_804449_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_010610.1\|WP_012391082.1\|821034_822255_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_010610.1\|WP_012391085.1\|825495_826719_+\|DUF389-domain-containing-protein	unknown	unknown	gnl\|CDD\|377221

Protein	Function_ID	Function_description	E-value
NC_010610.1\|WP_117939520.1\|823980_824931_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.67732e-24
NC_010610.1\|WP_012391056.1\|807927_809115_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.53559e-113
NC_010610.1\|WP_012391080.1\|813855_814797_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.61817e-129
NC_010610.1\|WP_012391086.1\|828164_828854_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.0193e-70
NC_010610.1\|WP_012391087.1\|829092_830262_+\|hydroxymethylglutaryl-CoA-synthase	gnl\|CDD\|213655	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.	9.30278e-160
NC_010610.1\|WP_012390709.1\|815612_816629_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.03697e-67
NC_010610.1\|WP_031265251.1\|813200_813842_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.35618e-72
NC_010610.1\|WP_012391076.1\|810792_811386_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.73064e-22
NC_010610.1\|WP_012391635.1\|823363_824056_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	0.00111747
NC_010610.1\|WP_012391078.1\|812475_813183_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23532e-46
NC_010610.1\|WP_012391074.1\|805002_807726_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.72627e-78
NC_010610.1\|WP_012391081.1\|818215_819436_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	3.29722e-128
NC_010610.1\|WP_012391077.1\|811412_812495_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.97619e-152
NC_010610.1\|WP_008211252.1\|826740_828075_-\|APC-family-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.29719e-34
NC_010610.1\|WP_041807736.1\|803259_803547_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.04832e-06
NC_010610.1\|WP_012391073.1\|803570_804449_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.04744e-62
NC_010610.1\|WP_012391082.1\|821034_822255_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.8234e-128
NC_010610.1\|WP_012391085.1\|825495_826719_+\|DUF389-domain-containing-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	1.2786e-50

>NC_010610.1|WP_012390709.1|815612_816629_+|IS30-family-transposase
MTNIKRTISKAYQQLSNFDRVRIETLLNQGFSQARIAHELNRSRSTISREITRGSVLQRIPGHKVALIYFADTAAYLHAQRRERCRPKTMLEKNPEFYAACAAAIKQRPRVHSVDSFVHTFKREHADEVIPSTPTVYRDIEAGRFELRTHDLPRKPSLRIKRSHSHTRTNKTKLGTSIDERPIEVQDRRQRGHWEGDLVKGKRVDSEPALLVLTERMSRFEIIIKLANYKANTCKVGLQSIIDDYGAEYFTTITFDNGSEFAQLDSVEGTDVYFAHPYSPWERGTNENQNGLLREFIPKGRSLHHYDIIDIQSFQDALNSRPRRILGYRSAAELMPEL
>NC_010610.1|WP_012391080.1|813855_814797_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKIGADKPKLQELGRIGDRISFLYLEHAVVNRQDSAIKVEDSTGIIYIPVAIIGVLLLGPGVDVTHRAMELIGDSGAAVLWVGEHGVRQYAHGRALGHSSKLLELQAKLVSNTRTRIAVARKMYQKRFPTEDVSQLTMQELRGKEGSRIRRVYREWSKKTGVEWTRREYNHDNFESSTPINKALTEAHQALYGLCYSVVAALGASPGLGFIHTGHDLAFIYDFADLYKAEFSIPTAFEVVAAYGDDNIEDRTRWAMRDKIRESKLILKMVADLKDLLGDDDTRNADIINLWDDKEGLQKFGVQYHEFGDDNS
>NC_010610.1|WP_031265251.1|813200_813842_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MVYLSRVEIDTKNRRKIKDLTNLGAYHNWIEQSFPDEIQKGIRKRHLWRIDTLANRKYLLVVSEDKPDLTILSRYGIANTTATKEYSPFINSIKKGQQLRFRLVANPVLRKGARKNGERERTFPHITINQQKEWLIKRSERAGFKLSENSFEIKERDFVPLYHKGNRPIRLSRVAFEGILEVIDPIALQNTLIYGLGREKAYGMGMLTVIPIN
>NC_010610.1|WP_012391078.1|812475_813183_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLVIRIAAPLQSYGDPASFEKRTTFRAPSKSAVIGMIGAALGFRRESDDYKSLNDLDFAVRVDQPGEVLSDFQITHYSLKKPGKLSHRIYLQDAVFMVALSSKQDALMEEIEYALRHPKFQLYFGRRSNPPAGILKMKMCPDKTAINVLKELPWQASVWFQRKYKKDVFNARIYADAKLVPDRPNRLIKDAVGSFNQKSRYYEYRSVAEDNVFLENSNYFQRKNTDHDIWTSI
>NC_010610.1|WP_012391077.1|811412_812495_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTKNLYVDIHVLQTVPASNINRDDSGAPKTALYGGVMRARVSSQSWKHAMREAFKKDGDGAEWLLSHRTKKGIQLLAAKLAEKDNTLDLDAAIKKAIEVFKVAGIKVKKDENTTGALFLLSDGQIDKLADYALQNDSYDKKELKEVFSNKNSLDLALFGRMVADNPELNVDAASQVAHAISTHEIVPEFDYFTALDDEQDSAGAAMIDTLEFNSSTLYRYANVNVKELLHNLGSAELTLKGIELFIKKFVLSMPTGKQNSFANKTIPPYVMVTIRNDTPVNLVSAFEEPVRSNDGYIRKSIEKLENEYDVTQSFVEKPETTVVLSTKESKIDNQVKDISSLLTNVAECLERMMNDENISD
>NC_010610.1|WP_012391076.1|810792_811386_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MANEIAKVTAQIIYSLYNNGNLDKAVLASLRHAVTIKDHRAENVWPIMFSKMAASDISSDPQGRETRQETAIYTALRCFAIYQQGLTQLSYASSNQVSAEDKGQQLFVALADLRKSQDKQAALDRRIQNLLSSTNIDSVAKSITQLVRILKSTDRNLLLDFSQLAQDLFFFQMGYEYSRKVFLKWGRQYYWQSVSTN
>NC_010610.1|WP_012391056.1|807927_809115_+|IS256-family-transposase
MNQFNKDIIAALSSDKDITLNEVLRRQIEVAANQFLQNELTAVLGYEPHTRIDRSKDDVNYRNGTYTRTIDTEYGEINLTIPRDRLNKFQNALFPPYVRRTDGLEEMVIKMYSKGVTTREIADMVERMYGHYYSPTTVSNITKRTEHLVEEFHERKFKYSQYVCVFLDATYIPLRRGTVEREAVNVAIGIRSDGGKEVLDYSIAPTENGAAWSELLQGLRARGIKDIQLFIADGLVGLQSAIEANYPQAKFQRCWVHAERNLLGYVRKNDRREIITDFKAIRQAENLQAAKEQLAAFSAKWESSYKRRIKNLVQMEELFTFFSFPTAIRQTIYSTNLIESFNKSLKKMVRRKEQFPNEGALDRFIMTQVMEYNDKFENRAHRGFKDCHDTLDSMF
>NC_010610.1|WP_012391074.1|805002_807726_+|CRISPR-associated-helicase/endonuclease-Cas3
MGELTTEELSLWGKKAIRDDQELWLPLVIHLIDAKNVINWLYNHWLTDNQRSLLMIENSESVTQNVVKFLGYIHDIGKATTAFQTKQSYAHNDSLDEDIMEKMIRGGFKDIDKLSFLKRSASPHALAGEALLEVYGVNKSIAAIIGGHHGKPLSNPVAKDTRYNSENYWPETPGEEQNRWRKVQEDLFQYGLHLCGFHKSSEIPRVNKIQAVLLEGLLIMADWLASSEYLNDDPSKPLFPLIDINESAADVNTEQRYQNAINTWQINDEWSAERVSDIDEYYVQHWGFHPREVQLAMCQEISKALDPGMMIVEAPMGIGKTEIALTVAEQLASRCGCNGLFMGLPTQATSNAMFDRVEDWLAKEAKEQDAKLSIKLMHGKAKFNQRNQAIPRAENVQGSGAVVVNEWFTGKKSILEEFTVGTIDNLLQMGLKQRHLFLKHLGLSGKVVVIDEVHGYDVYMSSYLAKVLQWLGAYNVPVIALSATLPKGKRNELLKSYEKGKFGSDQFETEPGWENNEAYPLLSMLDGKHLKQVTNFVSQKYKYVQVKRINVENNKLIDIVNAKIKDGGVAGIIVNTVKRAEEIADLMPKDVLTIVLHSAFLAPDRQKIEERLQSMTGKNAARPPRLVVIGTQVLEQSLDIDFDVLFTDIAPMDLILQRVGRLHRHNIKRPKGLQTPQLYILGINDYDDYGKSNEYIYEKYLLMKTDHFLKEKIALPGDISKLVQQVYDTATDSEVYGLKEAKAKFDKDQKIAENKAKVFQIAEPKHRGTIHKWLDWNLPDDRQGEIKAQAAVRDIQETLEVILLKEIDHQFYLLDGRKLVEVDDKTISDQVIRLPSVVTPEWKLDTIIKKLEDITSKNLPQWQQSIWLHDSLALILGSKQTTDFFDFRLSYSSNKGLCYERLEEKHG
>NC_010610.1|WP_012391073.1|803570_804449_+|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYISVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKTKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYPTQIQNLVVA
>NC_010610.1|WP_041807736.1|803259_803547_+|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIKLFTETREFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NC_010610.1|WP_012391081.1|818215_819436_-|IS256-family-transposase
MPKVELNLEDDELKELLLGDRDKVMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGSLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSELKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_010610.1|WP_012391082.1|821034_822255_+|IS256-family-transposase
MPKVELNLEDDELKELLLGDRDKAMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGTLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSELKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWTAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_010610.1|WP_041807739.1|822806_823169_+|hypothetical-protein
MYNQITITPTELVVSPAGLDRLWALKGAIRVPWRHVTGIFRDQGAFEEHKGLRLPGTAIPGLYYAGSFFYDGQRRFYNVRRNTPIVVITLINEGYDRLILSVENPATVIERVTGHLLNKA
>NC_010610.1|WP_012391635.1|823363_824056_+|helix-turn-helix-domain-containing-protein
MNRLELLYGYQKTESGLKVYADMHHVNQNTMTRWIRQFLLHGLAGVRHRSLNHRYLLNTKIEAVKEYQAGFPGEKIIEKYDIRSLSQLKQWSIQYNNDELKTKSRKRVRKMGRKVSFEEKCKIVQWVLDHDNDYQGATIQFNVSYQRVYSWVHKYHEAADSWEALKDNRGHRKPQKALEEMTEKERLEAEIKRLKKINREMELEIAFAKKLVEIRNRGVKRPDDIKRFKN
>NC_010610.1|WP_117939520.1|823980_824931_+|IS3-family-transposase
MRKKISRNTQSGGEETGRYQAVQELINETAGSVSELTKIAKVSRKSYYQWLKRQPTQREIENKAILEAIYQIEKRHQNCAGYKKVTAILNNENRKNQEIPEYTFSFDFCINIKRVRRIMRKHGIKADVRQKKRSRKKEQQQYQEDNLLERKFIQIAPNLVWVSDTTELTYGRNNKVRLHVVLDLYGRYVLSYHISPTETAEAAIEAFKRAAKQAGTFAPLIHTDRGAAYTSKDFNNYLTSNNSKHSLSAPGTPADNAVIEHYWGDFKYIWMTHHPHPQTLTELKDLVKQGVEYFNTVEISSKRNNLTAEDFRNEAV
>NC_010610.1|WP_008211256.1|825046_825367_-|hypothetical-protein
MAENYPENMTELNKQYLEEQKRDPTITKQQLIRRAVADAFQDFLSEAEEGHYDSGKLVGNEIQVFGINQKLRHVIKPMGTSFESDFEKDGAKLMWYLEEQANKAIK
>NC_010610.1|WP_012391085.1|825495_826719_+|DUF389-domain-containing-protein
MQEISTDVLNQNVRKGLTLNWSTQAILFCAIIIACIGLNTNSAPIVIGAMLISPLMGPIVGIGYALGNSNSGLLSRGARLFAAQFIIAVTGATIYFFISPLNAATDQLLARTEPTLWDVLIAFFGGFAGVISFAKKDGGNVVPGVAIATALMPPLCTIGYGISHLNWPFVWGAGYLFLINAFFIALATAVGTIFFRICSGERLNVSVKQEVIVLIVAIIVIIPSSISAYSIVQKSYVTAQLSQFVEDKLPDQYIAQQSVTGKTIQLTVIGTHLSDQKVKSLDRSLKVYHLDHYALSIKQLTRGNYITAKEFQDYMKQNNPQTTPAVNSQTPENKSLNQVQSDLVKQYPRQITNVLTGEVVDKANHKRQLIAIQLTSRGQKSRATIQATANKLAKANDVDAVIQFVQS
>NC_010610.1|WP_008211252.1|826740_828075_-|APC-family-permease
MARSTHKQLNALSIFLLGIDGIIGSGIFLMPSRVYAKLGDLSMVVMPLAGIAILSIALCFANLASKIPGDGGAWLYTYTAFGRFAGFEIGIFTWLLGIITMATEISAFVTSLRSLFPVLNQHGPYLITALGILAALTGLNLMGSGFMDWVDNVSTITKVGVLVAFVVIGLFFIHPANLGNLTGSPAATPLFSRFNQGFGMVFYMFTGFSFLPIAASKMKNPEKMLPRALISVLLTAAGLYLVVQLTAIGVAGSGLAAANVPIAVAFSHFAGTVGYDLALMGMLISILGVALSVSFSTPLIASSLASEHQLLPRTLGRQNKRGVPLQSLILSVVICALFLLSGNYLFLASCIVFTSFVQYVPTIFAAIKLRHHSKLPVGFKLPGGLTIPVLALLVTMYLTLSFSVTLVLTGLGIFLVSALWYLYDDRDRKANGLERDISAKDRPF
>NC_010610.1|WP_012391086.1|828164_828854_+|IS6-family-transposase
MMKNYFKGRHFQQDIILVAVGYYFRFNLSYRDVVEILRDRGITVHHTTIMRWVHHYGPIFQVLWRRHKHSASQSWRVDETYIKVKGQWCYLYRAIDNQGLTLDFELRKHRDYQSAYHFLKRLFTTDGRPNCLVTDQYGGTLKAIKQVIKDGLLEKANHQCSKYRNNLIEQDHRFIKRHRVRSAGFQTIRTAAKTLAGVEVVHAIRKETRRNGSFFGFSVTAELKQLLIA
>NC_010610.1|WP_012391087.1|829092_830262_+|hydroxymethylglutaryl-CoA-synthase
MKIGIDKLAFATTPYYLAMEDLAQGRNVDPNKYLIGIGQSKQAVVPPTQDVVTLAAAAADKLLDPVERDQVSTVIVATESGIDNSKAAAVYVKHLLKLSDFTRAVEVKEACYSATAALQFARGLVALNPQEKILVIASDIARYGLETGGEVTQGAGAVAMLITANPRVLAIEPTSVAYTKDVMDFWRPLYAEEALVNGKYSTNVYIDFFKQCWTRYQQLAGYGLEDFAALAFHLPFTKMGKKALEAELGDRDDQVATRLRANLTAGQEACRQVGNLYTGSLYLGLMSLLTEGDVKPGERIGLFSYGSGAEGEFFAGILQPGYQEGLGDLNEQLAARTQVSLAEYEDLFNQQLGLKEEDVTFKTPAAGQRFVLVGQKDHQRQYRDLAERD

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Crispr_ID: NC_010610_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010610_3

819535-820967

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCATGTATGTGGGGGTGATCC	PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCCT	CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	CRT

23 spacers

cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NC_010610_3

>merge|NC_010610|3|819535-820967|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCATGTATGTGGGGGTGATCCTACAACCAACTGCAAACGGCAACCCAACAGATCGTATTCCCCATGTATGTGGGGGTGATCCTACAAAGATGAACTTGTGAAAATGTCTTTCTTGGTATTCCCCATGTATGTGGGGGTGATCCTCAAGGAAATACATCCCAAGTTTATCTAACTGGGTATTCCCCATGTATGTGGGGGTGATCCCCCGGTGAAAAGCAAGGCGAACGCTTCTTCCTCGTATTCCCCATGTATGTGGGGGTGATCCTACTGGTGATAACTCTGGTCGCCTGATGGTTTTGTATTCCCCATGTATGTGGGGGTGATCCTAGCTAATGATTTCTTTGGTAGCGTCAGCCAGGGTATTCCCCATGTATGTGGGGGTGATCCCGGATGTGCATCACGATCATGAAAAACGACCACAGTATTCCCCATGTATGTGGGGGTGATCCTAGTAAATGGTATCAGGGGGCCGGCGAGTTACAGTATTCCCCATGTATGTGGGGGTGATCCTTGCTGACAAGGTATTTAAGGACGCCGAGAAACGTATTCCCCATGTATGTGGGGGTGATCCTTGTCGGTTGTTCTGCTGATTGCGTTGCTGTGGGTATTCCCCATGTATGTGGGGGTGATCCTTAAGCCGTTTAGCCATTGCAGCGTTGCTCATAGTATTCCCCATGTATGTGGGGGTGATCCTCAGTGCCCACCCGGTGGACGTTAGCTCTATCCGTATTCCCCATGTATGTGGGGGTGATCCTACCGGCGGGCGAAGTTGGTCAACCTCGTCATTGTATTCCCCATGTATGTGGGGGTGATCCTGGTATCACCTGAATATGGCGCATCCCATCGTTGTATTCCCCATGTATGTGGGGGTGATCCTATGATCCAGGCGAGGCGATTGCTAACGGTAAGGTATTCCCCATGTATGTGGGGGTGATGTCGACGTTCATACCGAGGCCATTGTCAGTCCAAGGTATTCCCCATGTATGTGGGGGTGATCCTACATGGCATACGCTTGAAATTGACTACGATAAGTATTCCCCATGTATGTGGGGGTGATCCCATGATATCCATGGTTAGCAGTAGTAATTATGAGTATTCCCCATGTATGTGGGGGTGATCCTCTTGCTAGACGCTTTCTTCCACTTTGAAAGGGGTATTCCCCATGTATGTGGGGGTGATCCTATATCAACGTTTTAAGTTGGTTAGTGTCCCAAGTATTCCCCATGTATGTGGGGGTGATCCTTGGAAGAGCTGGACGTTGTCAAATGACGGGAAGTATTCCCCATGTATGTGGGGGTGATCCTTAAGTATTCTTAAAGGAGGTCACACATTACTGGTATTCCCCATGTATGTGGGGGTGATCCTACTTATCCATACCAACTTGACTAATTAAATCAGTATTCCCCATGTATGTGGGGGTGATCCT

>NC_010610|3|2|819535-820966|PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCC	TACAACCAACTGCAAACGGCAACCCAACAGATC
GTATTCCCCATGTATGTGGGGGTGATCC	TACAAAGATGAACTTGTGAAAATGTCTTTCTTG
GTATTCCCCATGTATGTGGGGGTGATCC	TCAAGGAAATACATCCCAAGTTTATCTAACTGG
GTATTCCCCATGTATGTGGGGGTGATCC	CCCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC
GTATTCCCCATGTATGTGGGGGTGATCC	TACTGGTGATAACTCTGGTCGCCTGATGGTTTT
GTATTCCCCATGTATGTGGGGGTGATCC	TAGCTAATGATTTCTTTGGTAGCGTCAGCCAGG
GTATTCCCCATGTATGTGGGGGTGATCC	CGGATGTGCATCACGATCATGAAAAACGACCACA
GTATTCCCCATGTATGTGGGGGTGATCC	TAGTAAATGGTATCAGGGGGCCGGCGAGTTACA
GTATTCCCCATGTATGTGGGGGTGATCC	TTGCTGACAAGGTATTTAAGGACGCCGAGAAAC
GTATTCCCCATGTATGTGGGGGTGATCC	TTGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAGCCGTTTAGCCATTGCAGCGTTGCTCATA
GTATTCCCCATGTATGTGGGGGTGATCC	TCAGTGCCCACCCGGTGGACGTTAGCTCTATCC
GTATTCCCCATGTATGTGGGGGTGATCC	TACCGGCGGGCGAAGTTGGTCAACCTCGTCATT
GTATTCCCCATGTATGTGGGGGTGATCC	TGGTATCACCTGAATATGGCGCATCCCATCGTT
GTATTCCCCATGTATGTGGGGGTGATCC	TATGATCCAGGCGAGGCGATTGCTAACGGTAAG
GTATTCCCCATGTATGTGGGGGTGATGT	CGACGTTCATACCGAGGCCATTGTCAGTCCAAG
GTATTCCCCATGTATGTGGGGGTGATCC	TACATGGCATACGCTTGAAATTGACTACGATAA
GTATTCCCCATGTATGTGGGGGTGATCC	CATGATATCCATGGTTAGCAGTAGTAATTATGA
GTATTCCCCATGTATGTGGGGGTGATCC	TCTTGCTAGACGCTTTCTTCCACTTTGAAAGGG
GTATTCCCCATGTATGTGGGGGTGATCC	TATATCAACGTTTTAAGTTGGTTAGTGTCCCAA
GTATTCCCCATGTATGTGGGGGTGATCC	TTGGAAGAGCTGGACGTTGTCAAATGACGGGAA
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAGTATTCTTAAAGGAGGTCACACATTACTG
GTATTCCCCATGTATGTGGGGGTGATCC	TACTTATCCATACCAACTTGACTAATTAAATCA
GTATTCCCCATGTATGTGGGGGTGATCC

>NC_010610|3|3|819535-820967|CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAACCAACTGCAAACGGCAACCCAACAGATC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAAAGATGAACTTGTGAAAATGTCTTTCTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	CAAGGAAATACATCCCAAGTTTATCTAACTGG
GTATTCCCCATGTATGTGGGGGTGATCCC	CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTGGTGATAACTCTGGTCGCCTGATGGTTTT
GTATTCCCCATGTATGTGGGGGTGATCCT	AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG
GTATTCCCCATGTATGTGGGGGTGATCCC	GGATGTGCATCACGATCATGAAAAACGACCACA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGTAAATGGTATCAGGGGGCCGGCGAGTTACA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGCTGACAAGGTATTTAAGGACGCCGAGAAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA
GTATTCCCCATGTATGTGGGGGTGATCCT	CAGTGCCCACCCGGTGGACGTTAGCTCTATCC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT
GTATTCCCCATGTATGTGGGGGTGATCCT	GGTATCACCTGAATATGGCGCATCCCATCGTT
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGATCCAGGCGAGGCGATTGCTAACGGTAAG
GTATTCCCCATGTATGTGGGGGTGATGTC	GACGTTCATACCGAGGCCATTGTCAGTCCAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACATGGCATACGCTTGAAATTGACTACGATAA
GTATTCCCCATGTATGTGGGGGTGATCCC	ATGATATCCATGGTTAGCAGTAGTAATTATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGGAAGAGCTGGACGTTGTCAAATGACGGGAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGTATTCTTAAAGGAGGTCACACATTACTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTTATCCATACCAACTTGACTAATTAAATCA
GTATTCCCCATGTATGTGGGGGTGATCCT

>NC_010610|3|2|819535-820967|CRT
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAACCAACTGCAAACGGCAACCCAACAGATC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAAAGATGAACTTGTGAAAATGTCTTTCTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	CAAGGAAATACATCCCAAGTTTATCTAACTGG
GTATTCCCCATGTATGTGGGGGTGATCCC	CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTGGTGATAACTCTGGTCGCCTGATGGTTTT
GTATTCCCCATGTATGTGGGGGTGATCCT	AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG
GTATTCCCCATGTATGTGGGGGTGATCCC	GGATGTGCATCACGATCATGAAAAACGACCACA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGTAAATGGTATCAGGGGGCCGGCGAGTTACA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGCTGACAAGGTATTTAAGGACGCCGAGAAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA
GTATTCCCCATGTATGTGGGGGTGATCCT	CAGTGCCCACCCGGTGGACGTTAGCTCTATCC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT
GTATTCCCCATGTATGTGGGGGTGATCCT	GGTATCACCTGAATATGGCGCATCCCATCGTT
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGATCCAGGCGAGGCGATTGCTAACGGTAAG
GTATTCCCCATGTATGTGGGGGTGATGTC	GACGTTCATACCGAGGCCATTGTCAGTCCAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACATGGCATACGCTTGAAATTGACTACGATAA
GTATTCCCCATGTATGTGGGGGTGATCCC	ATGATATCCATGGTTAGCAGTAGTAATTATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGGAAGAGCTGGACGTTGTCAAATGACGGGAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGTATTCTTAAAGGAGGTCACACATTACTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTTATCCATACCAACTTGACTAATTAAATCA
GTATTCCCCATGTATGTGGGGGTGATCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010610.1\|WP_041807739.1\|822806_823169_+\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_117939520.1\|823980_824931_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_010610.1\|WP_008211256.1\|825046_825367_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_012391056.1\|807927_809115_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_010610.1\|WP_012391080.1\|813855_814797_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_010610.1\|WP_012391086.1\|828164_828854_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NC_010610.1\|WP_012391087.1\|829092_830262_+\|hydroxymethylglutaryl-CoA-synthase	unknown	unknown	gnl\|CDD\|213655
NC_010610.1\|WP_012390709.1\|815612_816629_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_010610.1\|WP_031265251.1\|813200_813842_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NC_010610.1\|WP_012391076.1\|810792_811386_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_010610.1\|WP_012391635.1\|823363_824056_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NC_010610.1\|WP_012391078.1\|812475_813183_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NC_010610.1\|WP_012391074.1\|805002_807726_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_010610.1\|WP_012391081.1\|818215_819436_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_010610.1\|WP_012391077.1\|811412_812495_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_010610.1\|WP_008211252.1\|826740_828075_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|129987
NC_010610.1\|WP_012391073.1\|803570_804449_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_010610.1\|WP_012391082.1\|821034_822255_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_010610.1\|WP_003685235.1\|830610_831237_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NC_010610.1\|WP_012391085.1\|825495_826719_+\|DUF389-domain-containing-protein	unknown	unknown	gnl\|CDD\|377221

Protein	Function_ID	Function_description	E-value
NC_010610.1\|WP_117939520.1\|823980_824931_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.67732e-24
NC_010610.1\|WP_012391056.1\|807927_809115_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.53559e-113
NC_010610.1\|WP_012391080.1\|813855_814797_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.61817e-129
NC_010610.1\|WP_012391086.1\|828164_828854_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.0193e-70
NC_010610.1\|WP_012391087.1\|829092_830262_+\|hydroxymethylglutaryl-CoA-synthase	gnl\|CDD\|213655	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade. This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.	9.30278e-160
NC_010610.1\|WP_012390709.1\|815612_816629_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.03697e-67
NC_010610.1\|WP_031265251.1\|813200_813842_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.35618e-72
NC_010610.1\|WP_012391076.1\|810792_811386_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.73064e-22
NC_010610.1\|WP_012391635.1\|823363_824056_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	0.00111747
NC_010610.1\|WP_012391078.1\|812475_813183_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23532e-46
NC_010610.1\|WP_012391074.1\|805002_807726_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.72627e-78
NC_010610.1\|WP_012391081.1\|818215_819436_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	3.29722e-128
NC_010610.1\|WP_012391077.1\|811412_812495_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.97619e-152
NC_010610.1\|WP_008211252.1\|826740_828075_-\|APC-family-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.29719e-34
NC_010610.1\|WP_012391073.1\|803570_804449_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.04744e-62
NC_010610.1\|WP_012391082.1\|821034_822255_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.8234e-128
NC_010610.1\|WP_003685235.1\|830610_831237_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	6.10821e-104
NC_010610.1\|WP_012391085.1\|825495_826719_+\|DUF389-domain-containing-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	1.2786e-50

>NC_010610.1|WP_012391081.1|818215_819436_-|IS256-family-transposase
MPKVELNLEDDELKELLLGDRDKVMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGSLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSELKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_010610.1|WP_012390709.1|815612_816629_+|IS30-family-transposase
MTNIKRTISKAYQQLSNFDRVRIETLLNQGFSQARIAHELNRSRSTISREITRGSVLQRIPGHKVALIYFADTAAYLHAQRRERCRPKTMLEKNPEFYAACAAAIKQRPRVHSVDSFVHTFKREHADEVIPSTPTVYRDIEAGRFELRTHDLPRKPSLRIKRSHSHTRTNKTKLGTSIDERPIEVQDRRQRGHWEGDLVKGKRVDSEPALLVLTERMSRFEIIIKLANYKANTCKVGLQSIIDDYGAEYFTTITFDNGSEFAQLDSVEGTDVYFAHPYSPWERGTNENQNGLLREFIPKGRSLHHYDIIDIQSFQDALNSRPRRILGYRSAAELMPEL
>NC_010610.1|WP_012391080.1|813855_814797_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKIGADKPKLQELGRIGDRISFLYLEHAVVNRQDSAIKVEDSTGIIYIPVAIIGVLLLGPGVDVTHRAMELIGDSGAAVLWVGEHGVRQYAHGRALGHSSKLLELQAKLVSNTRTRIAVARKMYQKRFPTEDVSQLTMQELRGKEGSRIRRVYREWSKKTGVEWTRREYNHDNFESSTPINKALTEAHQALYGLCYSVVAALGASPGLGFIHTGHDLAFIYDFADLYKAEFSIPTAFEVVAAYGDDNIEDRTRWAMRDKIRESKLILKMVADLKDLLGDDDTRNADIINLWDDKEGLQKFGVQYHEFGDDNS
>NC_010610.1|WP_031265251.1|813200_813842_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MVYLSRVEIDTKNRRKIKDLTNLGAYHNWIEQSFPDEIQKGIRKRHLWRIDTLANRKYLLVVSEDKPDLTILSRYGIANTTATKEYSPFINSIKKGQQLRFRLVANPVLRKGARKNGERERTFPHITINQQKEWLIKRSERAGFKLSENSFEIKERDFVPLYHKGNRPIRLSRVAFEGILEVIDPIALQNTLIYGLGREKAYGMGMLTVIPIN
>NC_010610.1|WP_012391078.1|812475_813183_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLVIRIAAPLQSYGDPASFEKRTTFRAPSKSAVIGMIGAALGFRRESDDYKSLNDLDFAVRVDQPGEVLSDFQITHYSLKKPGKLSHRIYLQDAVFMVALSSKQDALMEEIEYALRHPKFQLYFGRRSNPPAGILKMKMCPDKTAINVLKELPWQASVWFQRKYKKDVFNARIYADAKLVPDRPNRLIKDAVGSFNQKSRYYEYRSVAEDNVFLENSNYFQRKNTDHDIWTSI
>NC_010610.1|WP_012391077.1|811412_812495_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTKNLYVDIHVLQTVPASNINRDDSGAPKTALYGGVMRARVSSQSWKHAMREAFKKDGDGAEWLLSHRTKKGIQLLAAKLAEKDNTLDLDAAIKKAIEVFKVAGIKVKKDENTTGALFLLSDGQIDKLADYALQNDSYDKKELKEVFSNKNSLDLALFGRMVADNPELNVDAASQVAHAISTHEIVPEFDYFTALDDEQDSAGAAMIDTLEFNSSTLYRYANVNVKELLHNLGSAELTLKGIELFIKKFVLSMPTGKQNSFANKTIPPYVMVTIRNDTPVNLVSAFEEPVRSNDGYIRKSIEKLENEYDVTQSFVEKPETTVVLSTKESKIDNQVKDISSLLTNVAECLERMMNDENISD
>NC_010610.1|WP_012391076.1|810792_811386_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MANEIAKVTAQIIYSLYNNGNLDKAVLASLRHAVTIKDHRAENVWPIMFSKMAASDISSDPQGRETRQETAIYTALRCFAIYQQGLTQLSYASSNQVSAEDKGQQLFVALADLRKSQDKQAALDRRIQNLLSSTNIDSVAKSITQLVRILKSTDRNLLLDFSQLAQDLFFFQMGYEYSRKVFLKWGRQYYWQSVSTN
>NC_010610.1|WP_012391056.1|807927_809115_+|IS256-family-transposase
MNQFNKDIIAALSSDKDITLNEVLRRQIEVAANQFLQNELTAVLGYEPHTRIDRSKDDVNYRNGTYTRTIDTEYGEINLTIPRDRLNKFQNALFPPYVRRTDGLEEMVIKMYSKGVTTREIADMVERMYGHYYSPTTVSNITKRTEHLVEEFHERKFKYSQYVCVFLDATYIPLRRGTVEREAVNVAIGIRSDGGKEVLDYSIAPTENGAAWSELLQGLRARGIKDIQLFIADGLVGLQSAIEANYPQAKFQRCWVHAERNLLGYVRKNDRREIITDFKAIRQAENLQAAKEQLAAFSAKWESSYKRRIKNLVQMEELFTFFSFPTAIRQTIYSTNLIESFNKSLKKMVRRKEQFPNEGALDRFIMTQVMEYNDKFENRAHRGFKDCHDTLDSMF
>NC_010610.1|WP_012391074.1|805002_807726_+|CRISPR-associated-helicase/endonuclease-Cas3
MGELTTEELSLWGKKAIRDDQELWLPLVIHLIDAKNVINWLYNHWLTDNQRSLLMIENSESVTQNVVKFLGYIHDIGKATTAFQTKQSYAHNDSLDEDIMEKMIRGGFKDIDKLSFLKRSASPHALAGEALLEVYGVNKSIAAIIGGHHGKPLSNPVAKDTRYNSENYWPETPGEEQNRWRKVQEDLFQYGLHLCGFHKSSEIPRVNKIQAVLLEGLLIMADWLASSEYLNDDPSKPLFPLIDINESAADVNTEQRYQNAINTWQINDEWSAERVSDIDEYYVQHWGFHPREVQLAMCQEISKALDPGMMIVEAPMGIGKTEIALTVAEQLASRCGCNGLFMGLPTQATSNAMFDRVEDWLAKEAKEQDAKLSIKLMHGKAKFNQRNQAIPRAENVQGSGAVVVNEWFTGKKSILEEFTVGTIDNLLQMGLKQRHLFLKHLGLSGKVVVIDEVHGYDVYMSSYLAKVLQWLGAYNVPVIALSATLPKGKRNELLKSYEKGKFGSDQFETEPGWENNEAYPLLSMLDGKHLKQVTNFVSQKYKYVQVKRINVENNKLIDIVNAKIKDGGVAGIIVNTVKRAEEIADLMPKDVLTIVLHSAFLAPDRQKIEERLQSMTGKNAARPPRLVVIGTQVLEQSLDIDFDVLFTDIAPMDLILQRVGRLHRHNIKRPKGLQTPQLYILGINDYDDYGKSNEYIYEKYLLMKTDHFLKEKIALPGDISKLVQQVYDTATDSEVYGLKEAKAKFDKDQKIAENKAKVFQIAEPKHRGTIHKWLDWNLPDDRQGEIKAQAAVRDIQETLEVILLKEIDHQFYLLDGRKLVEVDDKTISDQVIRLPSVVTPEWKLDTIIKKLEDITSKNLPQWQQSIWLHDSLALILGSKQTTDFFDFRLSYSSNKGLCYERLEEKHG
>NC_010610.1|WP_012391073.1|803570_804449_+|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYISVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKTKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYPTQIQNLVVA
>NC_010610.1|WP_012391082.1|821034_822255_+|IS256-family-transposase
MPKVELNLEDDELKELLLGDRDKAMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGTLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSELKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWTAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_010610.1|WP_041807739.1|822806_823169_+|hypothetical-protein
MYNQITITPTELVVSPAGLDRLWALKGAIRVPWRHVTGIFRDQGAFEEHKGLRLPGTAIPGLYYAGSFFYDGQRRFYNVRRNTPIVVITLINEGYDRLILSVENPATVIERVTGHLLNKA
>NC_010610.1|WP_012391635.1|823363_824056_+|helix-turn-helix-domain-containing-protein
MNRLELLYGYQKTESGLKVYADMHHVNQNTMTRWIRQFLLHGLAGVRHRSLNHRYLLNTKIEAVKEYQAGFPGEKIIEKYDIRSLSQLKQWSIQYNNDELKTKSRKRVRKMGRKVSFEEKCKIVQWVLDHDNDYQGATIQFNVSYQRVYSWVHKYHEAADSWEALKDNRGHRKPQKALEEMTEKERLEAEIKRLKKINREMELEIAFAKKLVEIRNRGVKRPDDIKRFKN
>NC_010610.1|WP_117939520.1|823980_824931_+|IS3-family-transposase
MRKKISRNTQSGGEETGRYQAVQELINETAGSVSELTKIAKVSRKSYYQWLKRQPTQREIENKAILEAIYQIEKRHQNCAGYKKVTAILNNENRKNQEIPEYTFSFDFCINIKRVRRIMRKHGIKADVRQKKRSRKKEQQQYQEDNLLERKFIQIAPNLVWVSDTTELTYGRNNKVRLHVVLDLYGRYVLSYHISPTETAEAAIEAFKRAAKQAGTFAPLIHTDRGAAYTSKDFNNYLTSNNSKHSLSAPGTPADNAVIEHYWGDFKYIWMTHHPHPQTLTELKDLVKQGVEYFNTVEISSKRNNLTAEDFRNEAV
>NC_010610.1|WP_008211256.1|825046_825367_-|hypothetical-protein
MAENYPENMTELNKQYLEEQKRDPTITKQQLIRRAVADAFQDFLSEAEEGHYDSGKLVGNEIQVFGINQKLRHVIKPMGTSFESDFEKDGAKLMWYLEEQANKAIK
>NC_010610.1|WP_012391085.1|825495_826719_+|DUF389-domain-containing-protein
MQEISTDVLNQNVRKGLTLNWSTQAILFCAIIIACIGLNTNSAPIVIGAMLISPLMGPIVGIGYALGNSNSGLLSRGARLFAAQFIIAVTGATIYFFISPLNAATDQLLARTEPTLWDVLIAFFGGFAGVISFAKKDGGNVVPGVAIATALMPPLCTIGYGISHLNWPFVWGAGYLFLINAFFIALATAVGTIFFRICSGERLNVSVKQEVIVLIVAIIVIIPSSISAYSIVQKSYVTAQLSQFVEDKLPDQYIAQQSVTGKTIQLTVIGTHLSDQKVKSLDRSLKVYHLDHYALSIKQLTRGNYITAKEFQDYMKQNNPQTTPAVNSQTPENKSLNQVQSDLVKQYPRQITNVLTGEVVDKANHKRQLIAIQLTSRGQKSRATIQATANKLAKANDVDAVIQFVQS
>NC_010610.1|WP_008211252.1|826740_828075_-|APC-family-permease
MARSTHKQLNALSIFLLGIDGIIGSGIFLMPSRVYAKLGDLSMVVMPLAGIAILSIALCFANLASKIPGDGGAWLYTYTAFGRFAGFEIGIFTWLLGIITMATEISAFVTSLRSLFPVLNQHGPYLITALGILAALTGLNLMGSGFMDWVDNVSTITKVGVLVAFVVIGLFFIHPANLGNLTGSPAATPLFSRFNQGFGMVFYMFTGFSFLPIAASKMKNPEKMLPRALISVLLTAAGLYLVVQLTAIGVAGSGLAAANVPIAVAFSHFAGTVGYDLALMGMLISILGVALSVSFSTPLIASSLASEHQLLPRTLGRQNKRGVPLQSLILSVVICALFLLSGNYLFLASCIVFTSFVQYVPTIFAAIKLRHHSKLPVGFKLPGGLTIPVLALLVTMYLTLSFSVTLVLTGLGIFLVSALWYLYDDRDRKANGLERDISAKDRPF
>NC_010610.1|WP_012391086.1|828164_828854_+|IS6-family-transposase
MMKNYFKGRHFQQDIILVAVGYYFRFNLSYRDVVEILRDRGITVHHTTIMRWVHHYGPIFQVLWRRHKHSASQSWRVDETYIKVKGQWCYLYRAIDNQGLTLDFELRKHRDYQSAYHFLKRLFTTDGRPNCLVTDQYGGTLKAIKQVIKDGLLEKANHQCSKYRNNLIEQDHRFIKRHRVRSAGFQTIRTAAKTLAGVEVVHAIRKETRRNGSFFGFSVTAELKQLLIA
>NC_010610.1|WP_012391087.1|829092_830262_+|hydroxymethylglutaryl-CoA-synthase
MKIGIDKLAFATTPYYLAMEDLAQGRNVDPNKYLIGIGQSKQAVVPPTQDVVTLAAAAADKLLDPVERDQVSTVIVATESGIDNSKAAAVYVKHLLKLSDFTRAVEVKEACYSATAALQFARGLVALNPQEKILVIASDIARYGLETGGEVTQGAGAVAMLITANPRVLAIEPTSVAYTKDVMDFWRPLYAEEALVNGKYSTNVYIDFFKQCWTRYQQLAGYGLEDFAALAFHLPFTKMGKKALEAELGDRDDQVATRLRANLTAGQEACRQVGNLYTGSLYLGLMSLLTEGDVKPGERIGLFSYGSGAEGEFFAGILQPGYQEGLGDLNEQLAARTQVSLAEYEDLFNQQLGLKEEDVTFKTPAAGQRFVLVGQKDHQRQYRDLAERD
>NC_010610.1|WP_003685235.1|830610_831237_-|transcriptional-repressor-LexA
MPRNSTNKQMAVLSFIHKQVDAHGYPPTVREICGAVGLSSTSTVHGHINRLIKKGYLKKDPSKPRALEITPAGLEVLGITPKQTQIPLLGVVAAGEPILAVQDATDFFPIPPSIPDHDDLFMLTIQGTSMINIGILNGDKVIVRRQETANNGDIVIAMTSDNEATCKRFFKEQGHIRLQPENDTLAPIILDDVTILGKVVGLFRDDIF

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Crispr_ID: NC_010610_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010610_4

880230-880350

Orphan

Consensus_repeat	Method
TAGAGACTCTGATTTAGTATAATTAATGAAGTAAATTGGAGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010610_4

>merge|NC_010610|4|880230-880350|CRISPRCasFinder
TAGAGACTCTGATTTAGTATAATTAATGAAGTAAATTGGAGGATCTGGGCCTAGAATAAAAAGTGTACAAGTTAAATAGAGACTCTGATTTAGTATAATTAAGGAAGTAAATTGGAGGATC

>NC_010610|4|4|880230-880350|CRISPRCasFinder
TAGAGACTCTGATTTAGTATAATTAATGAAGTAAATTGGAGGATC	TGGGCCTAGAATAAAAAGTGTACAAGTTAAA
TAGAGACTCTGATTTAGTATAATTAAGGAAGTAAATTGGAGGATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010610.1\|WP_003685166.1\|878689_880090_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NC_010610.1\|WP_003685154.1\|884558_886415_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_010610.1\|WP_012391103.1\|865703_867041_-\|SLC45-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340871
NC_010610.1\|WP_021815960.1\|876285_876897_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NC_010610.1\|WP_041807749.1\|882876_883923_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_010610.1\|WP_003681899.1\|886526_887687_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237653
NC_010610.1\|WP_041807752.1\|888854_889421_+\|imidazole-glycerol-phosphate-synthase	unknown	unknown	gnl\|CDD\|234996
NC_010610.1\|WP_041807747.1\|882385_882751_-\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_012391105.1\|868901_869888_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_010610.1\|WP_024271704.1\|874611_875574_+\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224805
NC_010610.1\|WP_003685179.1\|871785_872958_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_010610.1\|WP_041807745.1\|880355_880643_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_010610.1\|WP_012391111.1\|883933_884521_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237631
NC_010610.1\|WP_012391106.1\|877071_878400_-\|D-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235096
NC_010610.1\|WP_012391108.1\|880666_881545_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_010610.1\|WP_021815959.1\|871315_871633_+\|hypothetical-protein	unknown	unknown	unknown
NC_010610.1\|WP_012391104.1\|867049_868744_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NC_010610.1\|WP_012391112.1\|888092_888641_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|237288
NC_010610.1\|WP_003681896.1\|888668_888836_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234996
NC_010610.1\|WP_003685171.1\|875919_876273_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753

Protein	Function_ID	Function_description	E-value
NC_010610.1\|WP_003685166.1\|878689_880090_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	5.69671e-158
NC_010610.1\|WP_003685154.1\|884558_886415_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_010610.1\|WP_012391103.1\|865703_867041_-\|SLC45-family-MFS-transporter	gnl\|CDD\|340871	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters. This group includes the solute carrier 45 (SLC45) family as well as plant sucrose transporters (SUCs or SUTs) and similar proteins such as Schizosaccharomyces pombe general alpha-glucoside permease. the SLC45 family is composed of four (A1-A4) vertebrate proteins as well as related insect proteins such as Drosophila sucrose transporter SCRT or Slc45-1. Members of this group transport sucrose and other sugars like maltose into the cell, with the concomitant uptake of protons (symport system). Plant sucrose transporters are crucial to carbon partitioning, playing a key role in phloem loading/unloading. They play a key role in loading and unloading of sucrose into the phloem and as a result, they control sucrose distribution throughout the whole plant and drive the osmotic flow system in the phloem. They also play a role in the exchange of sucrose between beneficial symbionts (mycorrhiza and Rhizobium) as well as pathogens such as nematodes and parasitic fungi. There are nine sucrose transporter genes in Arabidopsis and five in rice. Vertebrate SLC45 family proteins have been implicated in the regulation of glucose homoeostasis in the brain (SLC45A1), with skin and hair pigmentation (SLC45A2), and with prostate cancer and myelination (SLC45A3). Mutations in SLC45A2, also called MATP (membrane-associated transporter protein) or melanoma antigen AIM1, cause oculocutaneous albinism type 4 (OCA4), an autosomal recessive disorder of melanin biosynthesis that results in congenital hypopigmentation of ocular and cutaneous tissues. The SLC45 family and related sugar transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.19062e-111
NC_010610.1\|WP_021815960.1\|876285_876897_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	3.27973e-18
NC_010610.1\|WP_003681899.1\|886526_887687_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237653	PRK14276, PRK14276, chaperone protein DnaJ; Provisional.	0
NC_010610.1\|WP_041807752.1\|888854_889421_+\|imidazole-glycerol-phosphate-synthase	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	8.21972e-70
NC_010610.1\|WP_041807749.1\|882876_883923_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.95617e-130
NC_010610.1\|WP_012391105.1\|868901_869888_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.8009e-101
NC_010610.1\|WP_024271704.1\|874611_875574_+\|ketopantoate-reductase-family-protein	gnl\|CDD\|224805	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].	3.76656e-60
NC_010610.1\|WP_003685179.1\|871785_872958_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NC_010610.1\|WP_041807745.1\|880355_880643_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.34208e-05
NC_010610.1\|WP_012391111.1\|883933_884521_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237631	PRK14162, PRK14162, heat shock protein GrpE; Provisional.	1.68067e-53
NC_010610.1\|WP_012391106.1\|877071_878400_-\|D-serine-ammonia-lyase	gnl\|CDD\|235096	PRK02991, PRK02991, D-serine dehydratase; Provisional.	0
NC_010610.1\|WP_012391108.1\|880666_881545_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.30906e-60
NC_010610.1\|WP_012391104.1\|867049_868744_-\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_010610.1\|WP_012391112.1\|888092_888641_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|237288	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	5.31786e-66
NC_010610.1\|WP_003681896.1\|888668_888836_+\|hypothetical-protein	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	2.02348e-15
NC_010610.1\|WP_003685171.1\|875919_876273_-\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	5.69901e-24

>NC_010610.1|WP_003685166.1|878689_880090_-|amino-acid-permease
MKSKVVENQDGTMRALSNRHVQMIAIGGTIGTGLFLGSGSTISKTGPSIMLVYLTLALFFFFMMRAIGEMFYSDPSQHTFVSFISRYLGPTVGHFTGWTYWIGLVFVCMAELTATASYVQYWFPTIPSWLVELVFLAVLTSVNLIAARLFGEAEFWFAMIKIIAIIAMIVTGIFMMTSHSITPLGHASLSNIFHDYTLFPHGIFNFVSAFPMVFFAFQGIEFVSITIGEAKSPHAVIKKAVNETLLRILLFYIGALIVIMGIIPWTSLSANSSPFVQVFKLAGFPAAAATINFVVLTSAASALNSCIFSAGRHFYQLATEVPKSSWMNKTFAKISKNGVPAAAIILSAALVLITPLMSLTTAISSVFTIVTGVSSDMYIIVYTLTMIAHRKYRASSDFLPNGFVMPWYKVTSPLTIFFFGVIFVSLFFIPEDIIGAIGAIVWTLVFGSIEYFRQKKTALANIDQYK
>NC_010610.1|WP_012391106.1|877071_878400_-|D-serine-ammonia-lyase
MTENIEQLLHKFPLLNNMRQYEAIDWINPEFGEKAEIPFTQAEVFDVAARFKRFAPYLATVFPETQKTNGQLISPLIKIDKMQSRLASLNDAEIPGNVYLKADSMLPISGSIKSRGGIYEVLKFAEHVATTETNLTYSDDYAILATPEYHKLFADYGIMVGSTGNLGLSIGMAAASFGFKTTVHMSVDARQWKKDMLRANGVTVVEHNDSVSVAIAQGREEAAKDPHTYFIDDEGSKDLFLGYSAVGIEIQKQLADDGIFPDADHPVFVYLPAGVGGSPSGVSFGLQIMMPEGIYPVFAEPTHVPSVTMGMMTHLYDKIAVTDLGIDGKTLADGLAVPRSSKIAGRVMRTLLYGAHTFSDDDIYRYLAMLADTQGIYVEPSAAAGFTAIVPTVNEFKNKAALKNATHVVWATGGKLVPDDEMQKYYDKGRELLDEPQQILAR
>NC_010610.1|WP_021815960.1|876285_876897_-|alpha/beta-hydrolase
MFHQQGYNVLLPDARAHGQSQGKYIGYGWPERYDVRKWSKKLIAHNGQDSQIVIFGVSMGGATTMMTSGIHLPRQVKAFVEDFGYDSLNAELNYEAGNLYNIPRVIRAPLIGSLSLINRVKNGFYTHEASSTAMLARNHRPMLFIHGSKDTFVPTKMVYQNYAATKGPKKLWVVKGAKHAASYEKEPHEYPQHVARFLNQYVK
>NC_010610.1|WP_003685171.1|875919_876273_-|DUF1304-domain-containing-protein
MLVIFVVMLVAIGHIGIMLIEMFASPEQQARAFDLPVEFTRQKEARISFANQGIYNGALGVMIIASYWLVRGVLLITVWQMLLVFIMVVALYGGFTATKKIWVIQLLPALIAFLLTL
>NC_010610.1|WP_024271704.1|874611_875574_+|ketopantoate-reductase-family-protein
MTKYTVIGAGAMGLRYGVLIQERTGNPVDFIDTWEPSVNTIQEQKGTWVSRDHKDKHMVPINISFPEDYTGDPDVWIIFVKQMQLAEVLKRCAPLFKAHQYAFSAMNGMGHIDKISEYFPDDHIVGGTAMIATVLNGPGDVDFMGAPRTGVMHMCNKTEKTDAMTQQMFDDFKAAGLGPILTENFMGTLMSKVVFNAVVNTLCTMFEITMGQFIEYPGAKDMAEQLMNESFDACERAGIHLVETRQEEVESVDYVSRVANPYHYPSMYQDFSKGRNTEVDYINGYIAKIGREHDYICRTHEFLVHEVHMAEMMRKYKQAK
>NC_010610.1|WP_003685179.1|871785_872958_+|iron-containing-alcohol-dehydrogenase
MNRQFDFLMPSVNFFGPGVIAKIGDRAKMLNMHKPLVVTQESLEKIENGPVVQTIESLKKAGVDYAIFTGVEPNPKIRNIKAGKKMYEEEKCDSIITVGGGSAHDCGKGIGIVLTNGDDITKLAGIETLDNPLPPLMAVNTTAGTGSELTRHAVITNEEDHLKFVVVSWRNIPLVSFNDPMLMLGVPKSVTAATGCDAFVQAIEPYVSVDHNPITDSQCKEAIQLIQEALPEAVANGQNVEARTKMVEAEMLAGMAFNNANLGYVHAMAHQLGGQYDAPHGVCCALLLTTVEEYNLIACPDRFAELARIMGYDTTGLTTMQAAEKSIDGMREMCKAVGIPSSIKAIGAKPEDFSLMAENALKDGNAFSNPRKGTKQDIIDLYQKAYDGIY
>NC_010610.1|WP_021815959.1|871315_871633_+|hypothetical-protein
MDKAWNKETESEKICERIKRCFTNRWRTRYWVSVVYYEPEHGYNLFLNIQPRNAYSRSIPIARLADCDYSELLDIITDVRQTYHFTLNYLNFPDDQVRKMRRNFR
>NC_010610.1|WP_012391105.1|868901_869888_+|LacI-family-DNA-binding-transcriptional-regulator
MATIKDIARLAKVTPSTVSRVLNHSGGYSEKTRRRVEKIADELHYQKNEAAVNLVAQTSNLIGVIVTNATTSFAAPIIDSIEDWAYQNGGRILLAHCGLNDSERLKTCLNLMAGRKVNGIISVSVQFDENNLKLLDQLQLPLISLGVKVSNQPMISIDNLKAATTGTNYLISRGYQRIALIAVDTSDPQTGRTRCAGYQKAMESAGLTPSIIPGDYSFAAGKQAAEFLLAKGELPEAIFAASDDAAAGVIYAAQEHGIKVPEQLAVLGFDNSSVASMIYPGITTIDQPFKQMGRLAIEHLTNQNVSSVELPYQIKERGSVAKYNSAQS
>NC_010610.1|WP_012391104.1|867049_868744_-|alpha-glucosidase
MIYTPKWWWQNSVVYQVYPRSFQDSNHDGIGDLKGIISRLDYIKKLGADIIWLNPIYRSPNVDNGYDISDYRAIDPTFGSLTDFKELLTKAHELGLKIMMDLVVNHSSDENEWFKQSRQGKENPYRDYYIWRDPVDGHEPTNWGSYFSGSAWQYDETSGQYYLHLFAVKQPDLNWENEAVRHSVYDIMNWWADLGVDGFRMDVINLISKPAVYKDVPTAPGMQYGDVEPVVANGHRMHEFLQEMHQAVMAKHDLVTVGETPGATTDDAKKYANLEQTELNMVFEFEHVGLDGNDNPALGKWSDKKVSLPELRDNLVKWQTQLNGKAWNSLYWNNHDQPRVVSRFGNDDPKYRVVSAKMLATMLHCLQGTPYIYAGEELGMTNTTFNSLSDYRDLESINAYHQLVDEEHLVDGKTMSRYLAIHSRDNARTPMQWDDSKNAGFSDAEPWIAVNPNYSEINAKAALADPSSVFYHYQKLIQMRHDLPVMTEGKFALVNGNELDEQVFAYTRDDGETTLLVVANFTKETIKREYAAGQGKLLLSNYEDDMGETLRPYEAKVYEFSSKR
>NC_010610.1|WP_012391103.1|865703_867041_-|SLC45-family-MFS-transporter
MENQKTTTGLPSLPISTLFAMTFGFFGVNMAFSLQSSQMGRIFQTIGADPTKLGFFFILPPLMGMIVQPLVGKYSDLTWNRFGRRMPYLLVGAPIAALVLILLPNAGSFGFGYGSLAALWFGAIAVLFMDLSSNVCMQPFKMIIGDMVNEDQKDFAWSWQQIFSNMGGILATLMPFIMTLLGVSNTAKKGSLPNSVIWTFYLGAAVLLLTSIFTLAKVHEYNPQDYAKYHGVDIAANQEKLSFATLLKNAPKAFWQISLVQMFCWFAFQYLWTYGTGAVAKNVWNVTDPSTAGYQAAGNWFGVLSAVQSISAVLWGMVLSKTKPNQRKTMYRLGLVLGGLGFMSVFFIHDKMLLILSFALIGIGWISMNSIPFALLTTALAGKHEGAYLGLFNCSICLPQIIASVASFAIFPLIGKSMPGMLLLAGIVFVSGALFVSRIQEQPNA
>NC_010610.1|WP_041807745.1|880355_880643_+|transposase
MTKHSYDKEFKEQAAQYYLGNKDHMTMDEISKNLGIGASTLHKWIKLFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NC_010610.1|WP_012391108.1|880666_881545_+|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVVKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKTKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSYSKKAYPWNNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NC_010610.1|WP_041807747.1|882385_882751_-|hypothetical-protein
MPADHRYIQPQSAKEAMELIQKLFNSYRNAPLTSELLNYHNNLVTRLNDDIMAAATTEGPKRVEQLTGMIELMQAWTRIRLSGRPFLGKMRHFKLEDGNQPKYKRRIHKINGTSNHRASRH
>NC_010610.1|WP_041807749.1|882876_883923_+|heat-inducible-transcriptional-repressor-HrcA
MLTKRQKEVLQAIVRQYTTTGQPVGSKALVDHLAKKVSSATIRNEMAVLEHEGLVTKEHSSSGRVPSKLGYRYYVDHLLDPLSVTKNDLIVIQNSLGTEYQKIDEIVSHSADLLSNLTSYTAFTLKPEQKDARLSGFRLVPLGNQKVIAILVTDTGDVESQSFTLPRGIDTEAMEAVIRLINDQLTGLTLPEVVKRLVTDIPLQVTRHLHQPEGFLNIFDSVASRAAHERFFVGGRLNLLGFANQQNPAAVQELYALLDHGNNLQAILDPDDEHDISVRIGNEIADNQVLDDYSLITAKYQVDQYGEGIIAVLGPTRMPYARTIGLVDTFRRELAKRLLDHYRRYYDS
>NC_010610.1|WP_012391111.1|883933_884521_+|nucleotide-exchange-factor-GrpE
MAKDEEKNSQASAAPNEGEVKAKQEQTSAKEPAAKAGETEKVADLQKQVEELTKQLDDQKDQNLRAQAEMQNMTKRFKKEQAQLLKYDGQDLAKGILPVLDNLKRALEIEVEDENGQQLKKGIQMVHDHLEKALADHDIKEVEALNQPFDPTTQQAVQTVAASGDQKPDTVVQVLQAGYVLHDRVLRPAMVIVAQ
>NC_010610.1|WP_003685154.1|884558_886415_+|molecular-chaperone-DnaK
MASNKIIGIDLGTTNSAVAVMEGNEPKIITNPEGGRTTPSVVSFKNGEVQVGEVAKRQAITNPNTVKSIKSHMGEAGYTVDIEGKKYTPQEISAMILQYIKKYAEDYIGDTVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTASSLAYGLDKKDRDEKILVYDLGGGTFDVSILELGDGVFQVLSTNGDTHLGGDDFDQKIMDWLIDGFKQENGIDLSQDKMALQRLKDAAEKAKKDVSGVQEAQISLPFITSGDNGPLHLEKTLTRAQFNQLTNDLVERTKQPVLNALKDAELSFSDIDEVILNGGSTRIPAVQEMVKSLTGKEPNHSINPDEAVALGAAIQGGVLTGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGNFQLTDIPPAPRGVPQIKVTFDIDKNGIVNVSAEDQGTHKKQNITIKSNSGLSDEEIERMKKDAEANAEADKKKKEEADLRNETDQLLFQTDKTLEELKGKVSDDEIKKAQDAKDALQKAKDDNNLEDMKAKKDDLNKIVQDLTVKLYQQAQQENQANGGQPTGDQGDGKKDDDNTVDGDFEEVNPDDKK
>NC_010610.1|WP_003681899.1|886526_887687_+|molecular-chaperone-DnaJ
MAEEDLYDVLGVKKDASEAEIKRAYRKLAAKYHPDVNHEPGAEKKFKKINEAYETLSDDQKRAQYDQFGTTGSQAGGFGGQGGFGGFGQGGFSQGGFGDFSDIFGDIFGGGRARRDPSAPQQGRDLQYTMTLDFMDAVFGKETSIKYNRSAECHTCHGSGAKPGKSAHTCSTCHGQGYVLRQRQTMMGMMQSQEVCPTCGGKGQVIDPADQCDTCHGAGVTEERHELKVKVPQGIDDGQQMRLQGQGEAGKNGGPYGDLYIVFRVTPSRDFKRDGNTIYVDQDISISQATLGDHVQAKTVHGDVDLKIPAGTQSETKFRLRGKGVPRVNGNGNGDEYVTVHVKTPKTLNKRQREAMLAFAAASGEDVKGVKAGFFDKLKDAFEDNK
>NC_010610.1|WP_012391112.1|888092_888641_+|imidazole-glycerol-phosphate-synthase-subunit-HisH
MGAKTVLTNDAKQVVSSDGIILTGIGTYQSGMTNFMQRHLIGPIRRAVEQGVPLLGIGLDMELLFDYSTEGGLIPGLGLIKGRVTEIPSTPQLPVPIVGWNMNRLENPVSRFNQIDEEYTYFVHSYYVQTAPQNIVATAEYGVVIPTIVHRGNVVGMQFQAEKSGPMGLNLLNDFLEGVVAR
>NC_010610.1|WP_003681896.1|888668_888836_+|hypothetical-protein
MLTRRILPCLNVIDGRVKKRLLGSERLLDVGDPVELAFKYQENGTDGLVFITDPK
>NC_010610.1|WP_041807752.1|888854_889421_+|imidazole-glycerol-phosphate-synthase
MLDMVEAISQQVFMPMTVVCNVRTVAEVRNLLLAGADKVGISTRSIMAPDFIPKVAQVFGNQSIVAMLDYHVDPRTNRKIVCTPGNTELDAYEWALRVVELGVGELLVNSMDRDGTENGFDTAFYRDLTTTLTIPVVASGGAGSTADFEEVFVNSGVTGAMAASAFHLDQMTISEVKETLLEKGILVR

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Crispr_ID: NC_010610_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010610_5

1393493-1393734

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	CRT
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	PILER-CR
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC	CRISPRCasFinder

3 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_010610_5

>merge|NC_010610|5|1393493-1393734|CRT,PILER-CR,CRISPRCasFinder
TGACAGGGGACCACACCCCCGCGAAGGAGTGCGACAAACTGGTCGGCGGCGTCGATATACGACTGAAGCATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACTACCCTCAATTTGGGCGTTTTGACCTGTCGCATCATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACCAAGCCAAGGCTTGACGAACTTCCAAGCAAATAATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC

>NC_010610|5|3|1393493-1393733|CRT
TGACAGGGGACCACACCCCCGCGAAGGAGTGCGAC	AAACTGGTCGGCGGCGTCGATATACGACTGAAGC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	TACCCTCAATTTGGGCGTTTTGACCTGTCGCATC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	CAAGCCAAGGCTTGACGAACTTCCAAGCAAATA
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC

>NC_010610|5|3|1393562-1393733|PILER-CR
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	TACCCTCAATTTGGGCGTTTTGACCTGTCGCATC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	CAAGCCAAGGCTTGACGAACTTCCAAGCAAATA
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC

>NC_010610|5|5|1393562-1393734|CRISPRCasFinder
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACT	ACCCTCAATTTGGGCGTTTTGACCTGTCGCATC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC	AAGCCAAGGCTTGACGAACTTCCAAGCAAATA
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010610.1\|WP_004563240.1\|1389328_1390618_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NC_010610.1\|WP_012391423.1\|1393891_1394182_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_010610.1\|WP_012391419.1\|1385065_1388245_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_010610.1\|WP_012391416.1\|1381595_1382969_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223222
NC_010610.1\|WP_012391422.1\|1392578_1393457_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_010610.1\|WP_012391427.1\|1396779_1398681_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_010610.1\|WP_003683908.1\|1388244_1389327_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_010610.1\|WP_003688751.1\|1404342_1404630_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_010610.1\|WP_012391426.1\|1395879_1396758_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NC_010610.1\|WP_012391418.1\|1384135_1385053_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_010610.1\|WP_041807812.1\|1392267_1392555_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_010610.1\|WP_012391420.1\|1390617_1391583_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_010610.1\|WP_041807987.1\|1381104_1381545_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_010610.1\|WP_012391424.1\|1394191_1395223_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_010610.1\|WP_012391417.1\|1383097_1383904_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_010610.1\|WP_012391431.1\|1403440_1404319_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_010610.1\|WP_012391430.1\|1400769_1403208_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_010610.1\|WP_012391428.1\|1398677_1399418_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NC_010610.1\|WP_012391429.1\|1399483_1400704_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_010610.1\|WP_012391425.1\|1395219_1395876_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768

Protein	Function_ID	Function_description	E-value
NC_010610.1\|WP_004563240.1\|1389328_1390618_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NC_010610.1\|WP_012391423.1\|1393891_1394182_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.85272e-28
NC_010610.1\|WP_012391419.1\|1385065_1388245_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_010610.1\|WP_012391416.1\|1381595_1382969_-\|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	7.80752e-79
NC_010610.1\|WP_012391422.1\|1392578_1393457_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.87432e-61
NC_010610.1\|WP_012391427.1\|1396779_1398681_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.27724e-131
NC_010610.1\|WP_003683908.1\|1388244_1389327_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_010610.1\|WP_003688751.1\|1404342_1404630_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.28825e-07
NC_010610.1\|WP_012391426.1\|1395879_1396758_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	3.91148e-101
NC_010610.1\|WP_012391418.1\|1384135_1385053_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	1.77136e-162
NC_010610.1\|WP_041807812.1\|1392267_1392555_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.11175e-06
NC_010610.1\|WP_012391420.1\|1390617_1391583_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.63046e-157
NC_010610.1\|WP_041807987.1\|1381104_1381545_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.4315e-46
NC_010610.1\|WP_012391424.1\|1394191_1395223_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	8.88696e-163
NC_010610.1\|WP_012391417.1\|1383097_1383904_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.81629e-70
NC_010610.1\|WP_012391431.1\|1403440_1404319_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.00941e-61
NC_010610.1\|WP_012391430.1\|1400769_1403208_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.68792e-58
NC_010610.1\|WP_012391428.1\|1398677_1399418_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	2.61066e-84
NC_010610.1\|WP_012391429.1\|1399483_1400704_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.09905e-129
NC_010610.1\|WP_012391425.1\|1395219_1395876_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	8.79659e-32

>NC_010610.1|WP_012391422.1|1392578_1393457_+|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKTKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSCSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NC_010610.1|WP_041807812.1|1392267_1392555_+|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIELFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NC_010610.1|WP_012391420.1|1390617_1391583_-|aspartate-carbamoyltransferase-catalytic-subunit
MTTQLVEQLVSLPHFVSVEDLTTDQVNALIARAEEFKNGAPAPELSQPVYVTNMFFENSTRTHTSFAMAEKKLGLTEIPFDASHSSIKKGETLYDTCLTLDALGVDLTVIRASENDYYLPLINPGAGHYLGLGIVNGGDGSGQHPSQCMLDIMTIHEHFGHFKGLKVAIVGDITHSRVARSNMEILNKLGAEVYFSGPEYWYDHAFDKYGKFLPIDELVEEVDVMMLLRVQHERHAGDAHEGDFSAADYHKQYGINEERYALLKPDTIIMHPGPINRGVELADSLVEAPKSAFVAQMGNGVFMRMAMLEAVLRGRKLGGLE
>NC_010610.1|WP_004563240.1|1389328_1390618_-|dihydroorotase
MKTLIKNGTVYNDGRLVKEDVLVEDGIIRAIGKDLHEYLDDDYDELDAGNLLVSPGLVDVHVHYREPGQTEKETIKTGSAAAAHGGFTTVGAMPNVDPVPDTPAKVAQMVAKNKQDGLVHIAQYSAITTDRTSDEVVDMAGVKQAGAFAVSNDGNGVQAAGTMYRAMQAAKAVGLPLAAHVEDESLLFGGVMTEGDRSRYLGLPGAPEVVESAQVARDLALAKATGVHYHVCHVSTKDSLAMIHFAKQNGVRVTCEATPHHLLLSDQCIDGHDSNYKMNPPLRHEADRRALVAALNDGTVDMIATDHAPHTEEDKGRDFCCAANGITGSETAFALLYTKLVKTGLLKLERLLDLMATNPAEAFNLTEAGHLEVGKPADIAVFDLNHPYVIDQRDYLSKGINSPFTGMTVYGQTVMTMVDGQVVYQRKEN
>NC_010610.1|WP_003683908.1|1388244_1389327_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MQRYLVLEDGTTYRGTAFGADQAKTGEVVFTTGMTGYQEAITDQSFANQILVFTNPLIGNYGVNLDDDESLLPEIKGVVCRKLARVATNWRMQDDLANFLTQRGIPGLEGIDTRALVKKLRQHGTLRGRLVDDLTDLDQVVAALKQATPMKNIIPLVSTKSPYPNPGTKRNIVVVDFGIKHSILRELAKRDCNVIVLPHTATATQVLNLHADGVLLSNGPGDPLEMTAAAEMVKEVEQHLPVFGICMGHQILALANGAKTVKMKFGHRGFNHPVKNVATGEVNFTSQNHGYAVDATSIDPDRLLITHVEINDGTVEGLRHKHYPAFSVQFHPDAAPGPHDAEQLFDDFINLVDQRKKGRN
>NC_010610.1|WP_012391419.1|1385065_1388245_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALKEEGYETVLVNSNPATIMTDKGIADHVYIEPLTVAALTRILRQEAPDVLLPTLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLTVSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLELSPATQCLIEKSIAGYKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDCALKLISALKIEGGCNVQLALDPNSYDYNVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEIKNPVTKTTYAEFEPALDYVVVKIPRWPFDKFTKADRRLGSQMKATGEVMAIGRTAEEALLKAVASLEIDQKDLLSKEAAAASDRQLEDKLVHAQDDRLFYIAEAFRRGYSLADLHELTRINHYFLDIVAGLVEEEGRIKAAGLDKEVIYEAKRDGFADTTLATLLGQNPAAIRAFRKANGIVPVYKMVDTCAAEFDSATPYFYSTYETENESRRSAKPSVLVIGSGPIRIGQGVEFDYATVHCVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGGQTAINLASGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDAAKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVDAICDGERVLLPGIMEHIEHAGVHSGDSMAVYPPQSLSGAVKVQIEEATKKLAVALKCVGIMNIQFIIHDGQAYVLEVNPRASRTVPFLSKVTGIEMAQLATKVILGHSLAEQGYRSGLAPESQMIHVKAPVFSFSKLGDVDSYLGPEMKSTGEVMGSDTTYEKALYKAFAGAGMEVPDNGAVLLTIEDNDKAQILPLAKRFLAIGYRILATSGTAAFLEENGLHPTVVAKLHEQGQPAILDVIKDKHVDLVINTMGHDDEKNSDGFIIRQTAIEHHVPLLTALDTVNALLRSLEMTSFKTTEL
>NC_010610.1|WP_012391418.1|1384135_1385053_-|dihydroorotate-dehydrogenase
MTNRLAVSLPGLNMTNPLMPASGTFGFGDAWGADQVNFNDLGALVIKTTTPEARTGNPQPQIAKLTDGVMNAVGLTNPGVDAVIKEKLPNLAKQYPDLPVVGSIGGSTETDYVLVAEKLAKSGLVSALELNVSCPNVAHGGMAFGTDAKVLESLTNQVKRVVGDVPLYVKLTPNVTDITEVARGAEAGGADGLSLINTVLGLHIDIRTGQPVLGNGMGGYSGTAVKPLAVRMVYQVARATKLPIIGMGGIETAADVLEFMMAGASAVAVGAAHFKDIAACPHIAAQLPALMDELGIKTLAELKRI
>NC_010610.1|WP_012391417.1|1383097_1383904_+|Cof-type-HAD-IIB-family-hydrolase
MDQHLIALDMDGTTLNNQSKLTDHTVSTLRRLANDGHLVVIVTGRPWLISAHLYDQIGLKSPIINFNGALAHLPYQNWKHEYAIKVTRELTLDMLESRRELGVQTLIAEDKHHVWANHPSNELPEFLPAQLSDDQILNERNLTDDPIALTIQFDPAKKDAIINRVNERYGDFVEPRVWGGGYSIMELIHRGTHKETALSYLAHHFQIDRQHIVAFGDEQNDLEMIDFAGHGVAMKNAIPELKAVAKDVTTLDNEHDGVADYLEKYFQL
>NC_010610.1|WP_012391416.1|1381595_1382969_-|RsmB/NOP-family-class-I-SAM-dependent-RNA-methyltransferase
MQLPTAFIEKYQRLLKEEAPAFLAALTSGTVQSGFRANPLKQGQPTATIEAAAGQSPYVTNGYLGKVDGHSLDHVTGWVYSQEPSAMLVGEFADPQPGERVLDLCAAPGGKSTHLIAKMNDEGLLVANEIFKNRAQVLAENLERWGAKHVVVANESPDQLEKQFPAFFDRILVDAPCSGEGMFRKEPAGIEYWNEDYPAECANRQRHILTSALKMLKPGGTLVYSTCTFAPEEDEQMAAWLLNNYDLTMVELEKAPGMDAGRPEWADGNPELTKALRLFPHHFKGEGHFIAKFVKNGEEPVLPTKKNKKKKGRGQRSKFAPTKEQQALWQDFQTKVLPNYEAGQLVVFGDYLYDLPVGMPAIDQMSLIRPGLQLGVFKKNRFEPALALALATKPATCTQVVEVDEPAWRTYVHGDTLTIQDAPKNGWYLVECDQHAAGWGKLVNGTLKNFFPKGLRF
>NC_010610.1|WP_041807987.1|1381104_1381545_+|IS200/IS605-family-transposase
MLHSLYTRRYIYNFHYHLIWVTKYRNQAFTTEVLSNEMKAILQQVADDNDIVIEKMEVMPDHIHMLISFSPSKAPASAIKALKGRSAYIFLQNHPEIRCSQYWGGHLWSPSYYMSTLGNMSKEVVEKYINDQKYTETNKKPHKGAQ
>NC_010610.1|WP_012391423.1|1393891_1394182_-|CRISPR-associated-endonuclease-Cas2
MLVIVSYDVNTEDPTGRRRLRHVAKICKDYGQRIQKSVFECNVDSTKLTVLKQRLLAEYDEDTDSLCFFNLGNKYQNKVSHYGSNSVVNLDEPVIF
>NC_010610.1|WP_012391424.1|1394191_1395223_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVNTPNAYLASEGNNVKIIIDQDCVGQLPLQNFESIVTFGYAGASSGLMQKCLNQGIALSFMQPNGQIKGRVSGKPTGNVYLRRTQFRVADDDQAKLKLARNFILGKVFNQRWVIERFIRDHGMQVDQAKLKAVSVTLKDGLDKIQRAVDMESLRGIEGNLATEYFSVINDLIINQIEAFSFHDRIRRPPLDRVNALMSFAYSLLANECGGALIVNGLDPYVGFMHVDRPGREGLALDLMEELRAVIADRFVLRMINLKILRSSDFKQAPDGAVLLTDEARKKFLTKWHENEQKTLQHPYLNEKIEWGLVPFAQSQLLARCLRGDLDEYPPFLWK
>NC_010610.1|WP_012391425.1|1395219_1395876_-|CRISPR-associated-protein-Cas4
MAYDNDDILQISGIQHFIFCRRQWALAYLENSWVENYLTLTGDELHKKVDNPFIKESRNAKFIERAMRINSRRLGLSGICDVVEFIENPDGVRIFGKSGEYLPIPVEYKRGKQKSDHSDELQLLAEAVCLEEMLYCHLDYGYLYYGQTKHRERVEFSKELRDELNKAVAEMHRYWEKKYTPRVKPSKKCRSCSLKDICLPELLKTEKVSDYIKRRLEG
>NC_010610.1|WP_012391426.1|1395879_1396758_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAEVLNHRIDFKVVIAAAGANPNGDPLNGNRPRQTSDGYGEISDVAIKRKVRNRLQDLGNKVFVQSADRADDEAKSLKERVESNDELKKLMDAGDNEGFAEAADNTWIDVRSFGQVFAFKGKGKSKGVSVGVRGPVSITRARSIAPIAINDMQITKSVNGETTEGRGSDTMGMKYSVDFAVYEFSGSINVQLAEKTGFTDEDAGMIHQALETLFDNDESSARPAGSMEVLRVYWWEQEGKLGKVAPAKIFRTVKVTPKEGTFDVRDFDDVDFTSADQAATEIEGAMCDIYRG
>NC_010610.1|WP_012391427.1|1396779_1398681_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWMSELVDLYDRNQNKAGKVTNVKRRGKNGETVLKPVFLLPINHVSNYVEIEIKLNLDGDFVGAEVINKEKTIMPVTIESAARTSGIRPRPVDDKFQYIARDYNQLQEVLEAKREAGEHKDKPYKQDGDFDEYLQQLTDFFEFTKEHSKTVAPLLMAIQKYVANNDLIIDLIHSGQFGELDSYEDIDEKSILANNPLCRFNVLTEGPVRWKNPECFKAWSDFYQFKLAKEGKTGFDYVAGNEHVPLGTNHPKGILPLASGAKLISSNDTQNFTFRGRFINSEEAVSIGYESSQKGHAMLKWLIDKQGFSIGGRYYITWGTTGENLTTINPQDNELFNDILSLDDEIEDTNSAFASQLRNLLLKGASVNGIPKQNPVYVMQLEGTTTGRFGIVYYQALDLTTYIERITDWYTKLYLKCDDNKYIYPSLKFIADRIYGDRNDETTQKLKKDVVTDLVQSILGGRKISYSYLSKIFQKSIRPTSFDNQSAWKLTVTTAARLFKSYFSREEIEPMLNTDFKDRSYLYGRLLAIADVVEQGVLGANGQDRSTNARRYMSAFSQRPADTWKVIYVNLQPYLTKSNYRQKAQRLFDEINEKFDVTDSQLNSPLDGKFLIGYSQQRTDWYKSSKSKSEVE
>NC_010610.1|WP_012391428.1|1398677_1399418_-|type-I-C-CRISPR-associated-protein-Cas5
MSLKERTTFCFQVDGDFALFTDPITKIGGEKFTYPVPTYQALKGIAESIYWKPTFQIVIDKVRIMKPIITEARDIRLMKYNRTGASDLARYTYLRDVSYQVQAHLEWNEQRVDLMKDRNANKHYAIMKRSIARGGRRDIFLGTRECQGFVEECRFGQGSGYYDDSDDRLFGTMLHGFDYPDETGEDYLGLRLWNVVMKKGIIEFPPPTDLQLHRRKLHELEAKKFTLDDIQSVDDTYEELLGGEDE
>NC_010610.1|WP_012391429.1|1399483_1400704_-|IS256-family-transposase
MPKVELNLEDDELKELLLGDRDKAMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGTLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSESKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_010610.1|WP_012391430.1|1400769_1403208_-|CRISPR-associated-helicase/endonuclease-Cas3
MDFISHTVEGSTDFQLLREHLINAKNLAEDYGTDIDIPKVTGLAALLHDLGKYRVAFQEYIQNGVGHHGSVDHSSFGAYFIHQFINEHSQAESEKDRLYLTWFGETIENAIMSHHNSLGLKDFVDAHVNSPFLKRLNKVEEDPELKDELQRVIQRFFQEVMGEKEISDYFDQAYKEFSLLIDKCFSQDKKTLLSNLFFIETYVYSCVLDADRTDTATFSLDQPVKRYDYSAVFEDYYQKLNRQLAGMNSEKEINQLRSAMSDECDDFAEKRDGIYQLSIPTGGGKTLAGMRYGLKRSILSHKKHIFGVLPLITIIEQNARVYRETFNGDRLDNQNILEFHSNVAQELRSNKEKDDLLDLAEDSWNSPITVTTMVQFLNCIFASGTTNRRRFHNLCNSVIILDEVQKVPVKCLSLFNKAINFLKEVGHCSILLCTATQPALGDLKASLKIDGEIIQDLSQRQEDFKRVKFTDLTRQGIQEHPISSQELAELITYKFNDSQRILVILNTIGAVNQLAENLDSGQLNCKVYALTTRMCAAHRQKLIKEIKDRLAQKLPTICVSTPLIEAGVDISFETVYRSVCGLDSIVQAAGRCNRNGERDRGDVYLVLLNKDSEKLDKLREIKWGQKIVLNMLAQKDFDPDSLLQTKVINNYFDHFYQEIDQSELSGYPTSDEGRDIHLADYIEGKQASRDYLQQNSGSELKAFSGSETIAKHFEVIDQETVSVLVPYGKGSDFIALLNSQNYQDSLSEIFKEVQPYLVNVFKNMLRGLIEKEVVYPIEFPFSDREVYTVRDSYYQEESGLNYQIKNSESMIF
>NC_010610.1|WP_012391431.1|1403440_1404319_-|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYDAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKAKHSRHISKPLIMHSDRGSQFMSEAYNQVTANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NC_010610.1|WP_003688751.1|1404342_1404630_-|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIKLFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	801225-801255	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	803179-803209	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1346677-1346707	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1392187-1392217	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1404681-1404711	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1600766-1600796	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1614883-1614913	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1662446-1662476	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1776393-1776423	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_010610.1	1615140-1615170	1	0.968

1. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 801225-801255, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

2. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 803179-803209, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

3. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1346677-1346707, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

4. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1392187-1392217, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

5. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1404681-1404711, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

6. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1600766-1600796, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

7. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1614883-1614913, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

8. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1662446-1662476, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

9. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1776393-1776423, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

10. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to position: 1615140-1615170, mismatch: 1, identity: 0.968

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggtctagaataaaaagtgtacaagttaaa	Protospacer
****.**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010610_3	3.12\|820235\|33\|NC_010610\|PILER-CR	820235-820267	33	GU323708	Lactobacillus phage phiPYB5, complete genome	7411-7443	0	1.0
NC_010610_3	3.35\|820236\|32\|NC_010610\|CRISPRCasFinder,CRT	820236-820267	32	GU323708	Lactobacillus phage phiPYB5, complete genome	7411-7442	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP015861	Lactobacillus plantarum strain LZ227 plasmid LZ227p3, complete sequence	27431-27461	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP035135	Lactobacillus plantarum strain SRCM103311 plasmid unnamed4	44248-44278	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP019032	Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence	23674-23704	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	55094-55124	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	1337-1367	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	35705-35735	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	52649-52679	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP032360	Lactobacillus plantarum strain ZFM55 plasmid unnamed1, complete sequence	27808-27838	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP018212	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_3, complete sequence	32959-32989	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP043940	Lactobacillus nenjiangensis strain SH-Y15 plasmid pHY011, complete sequence	23283-23313	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP032643	Lactobacillus plantarum strain ZFM9 plasmid unnamed1, complete sequence	44328-44358	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	43117-43147	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP018179	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-3, complete sequence	31547-31577	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP018182	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-2, complete sequence	30401-30431	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP028244	Lactobacillus plantarum strain SRCM101518 plasmid unnamed3, complete sequence	30463-30493	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP054261	Lactobacillus plantarum strain TCI507 plasmid unnamed2	15620-15650	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	MN830253	Lactobacillus phage JNU_P5, complete genome	32972-33002	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP032753	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed2, complete sequence	20436-20466	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP011405	Lactobacillus salivarius str. Ren plasmid pR2, complete sequence	33388-33418	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	CP033373	Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence	237163-237193	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	CP033373	Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence	249367-249397	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP032745	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence	33308-33338	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP012651	Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK03, complete sequence	21474-21504	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_LN898145	Lactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence	42909-42939	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	11362-11392	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	31820-31850	0	1.0
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP013152	Lactobacillus plantarum strain MF1298 plasmid pMF1298-4, complete sequence	35887-35917	0	1.0
NC_010610_3	3.9\|820052\|33\|NC_010610\|PILER-CR	820052-820084	33	HQ141410	Lactobacillus phage LF1, complete genome	38426-38458	1	0.97
NC_010610_3	3.11\|820174\|33\|NC_010610\|PILER-CR	820174-820206	33	GU323708	Lactobacillus phage phiPYB5, complete genome	30436-30468	1	0.97
NC_010610_3	3.32\|820053\|32\|NC_010610\|CRISPRCasFinder,CRT	820053-820084	32	HQ141410	Lactobacillus phage LF1, complete genome	38427-38458	1	0.969
NC_010610_3	3.34\|820175\|32\|NC_010610\|CRISPRCasFinder,CRT	820175-820206	32	GU323708	Lactobacillus phage phiPYB5, complete genome	30436-30467	1	0.969
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	20865-20895	1	0.968
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NC_021503	Lactobacillus reuteri I5007 plasmid pLRI01, complete sequence	21758-21788	1	0.968
NC_010610_2	2.13\|817674\|33\|NC_010610\|PILER-CR	817674-817706	33	GU323708	Lactobacillus phage phiPYB5, complete genome	31690-31722	2	0.939
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	GU323708	Lactobacillus phage phiPYB5, complete genome	31691-31722	2	0.938
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP040502	Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence	17007-17037	2	0.935
NC_010610_2	2.23\|817065\|32\|NC_010610\|CRISPRCasFinder,CRT	817065-817096	32	MN830252	Lactobacillus phage JNU_P1, complete genome	18398-18429	3	0.906
NC_010610_2	2.32\|817614\|32\|NC_010610\|CRISPRCasFinder,CRT	817614-817645	32	MN830252	Lactobacillus phage JNU_P1, complete genome	44275-44306	3	0.906
NC_010610_4	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	NZ_CP045730	Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence	25375-25405	3	0.903
NC_010610_2	2.3\|817064\|33\|NC_010610\|PILER-CR	817064-817096	33	MN830252	Lactobacillus phage JNU_P1, complete genome	18398-18430	4	0.879
NC_010610_2	2.12\|817613\|33\|NC_010610\|PILER-CR	817613-817645	33	MN830252	Lactobacillus phage JNU_P1, complete genome	44274-44306	4	0.879
NC_010610_3	3.16\|820479\|33\|NC_010610\|PILER-CR	820479-820511	33	MN830253	Lactobacillus phage JNU_P5, complete genome	27018-27050	4	0.879
NC_010610_3	3.39\|820480\|32\|NC_010610\|CRISPRCasFinder,CRT	820480-820511	32	MN830253	Lactobacillus phage JNU_P5, complete genome	27018-27049	4	0.875
NC_010610_3	3.45\|820846\|32\|NC_010610\|CRISPRCasFinder,CRT	820846-820877	32	GU323708	Lactobacillus phage phiPYB5, complete genome	7328-7359	4	0.875
NC_010610_2	2.23\|817065\|32\|NC_010610\|CRISPRCasFinder,CRT	817065-817096	32	MG592499	Vibrio phage 1.124.O._10N.286.49.B1, partial genome	4933-4964	5	0.844
NC_010610_3	3.22\|820845\|33\|NC_010610\|PILER-CR	820845-820877	33	GU323708	Lactobacillus phage phiPYB5, complete genome	7328-7360	5	0.848
NC_010610_3	3.34\|820175\|32\|NC_010610\|CRISPRCasFinder,CRT	820175-820206	32	MN830252	Lactobacillus phage JNU_P1, complete genome	42112-42143	5	0.844
NC_010610_2	2.37\|817920\|32\|NC_010610\|CRISPRCasFinder,CRT	817920-817951	32	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	18906-18937	6	0.812
NC_010610_2	2.37\|817920\|32\|NC_010610\|CRISPRCasFinder,CRT	817920-817951	32	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	18905-18936	6	0.812
NC_010610_2	2.37\|817920\|32\|NC_010610\|CRISPRCasFinder,CRT	817920-817951	32	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	18905-18936	6	0.812
NC_010610_2	2.37\|817920\|32\|NC_010610\|CRISPRCasFinder,CRT	817920-817951	32	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	18905-18936	6	0.812
NC_010610_3	3.29\|819869\|32\|NC_010610\|CRISPRCasFinder,CRT	819869-819900	32	NZ_CP050268	Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence	30871-30902	6	0.812
NC_010610_3	3.36\|820297\|32\|NC_010610\|CRISPRCasFinder,CRT	820297-820328	32	NC_025829	Shigella phage pSs-1, complete genome	161354-161385	6	0.812
NC_010610_2	2.22\|817004\|32\|NC_010610\|CRISPRCasFinder,CRT	817004-817035	32	MK448885	Streptococcus phage Javan252, complete genome	22866-22897	7	0.781
NC_010610_2	2.32\|817614\|32\|NC_010610\|CRISPRCasFinder,CRT	817614-817645	32	NC_048682	Raoultella phage Ro1, complete genome	55619-55650	7	0.781
NC_010610_2	2.32\|817614\|32\|NC_010610\|CRISPRCasFinder,CRT	817614-817645	32	MK024806	Proteus phage Mydo, complete genome	66701-66732	7	0.781
NC_010610_2	2.32\|817614\|32\|NC_010610\|CRISPRCasFinder,CRT	817614-817645	32	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	72670-72701	7	0.781
NC_010610_2	2.38\|817981\|32\|NC_010610\|CRISPRCasFinder,CRT	817981-818012	32	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	206579-206610	7	0.781
NC_010610_3	3.24\|819564\|32\|NC_010610\|CRISPRCasFinder,CRT	819564-819595	32	GU943074	Uncultured phage MedDCM-OCT-S08-C964 genomic sequence	11419-11450	7	0.781
NC_010610_5	5.5\|1393667\|32\|NC_010610\|CRISPRCasFinder	1393667-1393698	32	NZ_KM017071	Sphingomonas sp. JE1 plasmid pJE1, complete sequence	128926-128957	7	0.781
NC_010610_2	2.2\|817003\|33\|NC_010610\|PILER-CR	817003-817035	33	MK448885	Streptococcus phage Javan252, complete genome	22865-22897	8	0.758
NC_010610_2	2.5\|817186\|33\|NC_010610\|PILER-CR	817186-817218	33	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	6901-6933	8	0.758
NC_010610_2	2.18\|817980\|33\|NC_010610\|PILER-CR	817980-818012	33	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	206579-206611	8	0.758
NC_010610_2	2.21\|816943\|32\|NC_010610\|CRISPRCasFinder,CRT	816943-816974	32	MN694574	Marine virus AFVG_250M706, complete genome	47561-47592	8	0.75
NC_010610_2	2.25\|817187\|32\|NC_010610\|CRISPRCasFinder,CRT	817187-817218	32	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	6902-6933	8	0.75
NC_010610_2	2.29\|817431\|32\|NC_010610\|CRISPRCasFinder,CRT	817431-817462	32	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	29508-29539	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349325	Cyanophage S-RIM12 isolate W1_24_0910, complete genome	48813-48844	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	NC_049384	Enterobacter phage EspM4VN DNA, complete genome	128982-129013	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349326	Cyanophage S-RIM12 isolate WH_05_0310, complete genome	50513-50544	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349327	Cyanophage S-RIM12 isolate WH_07_0310, complete genome	50763-50794	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349322	Cyanophage S-RIM12 isolate Sn_31_0910, complete genome	48818-48849	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349310	Cyanophage S-RIM12 isolate RW_01_0310, complete genome	48710-48741	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349321	Cyanophage S-RIM12 isolate Sn_07_0910, complete genome	48710-48741	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349324	Cyanophage S-RIM12 isolate W1_12_0610, complete genome	51132-51163	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349308	Cyanophage S-RIM12 isolate Np_15_0310, complete genome	50512-50543	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	LC373201	Enterobacter phage phiEM4 DNA, complete genome	128982-129013	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349311	Cyanophage S-RIM12 isolate RW_04_0310, complete genome	50510-50541	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349323	Cyanophage S-RIM12 isolate W1_08_0910, complete genome	49460-49491	8	0.75
NC_010610_2	2.30\|817492\|32\|NC_010610\|CRISPRCasFinder,CRT	817492-817523	32	KX349313	Cyanophage S-RIM12 isolate RW_06_0310, complete genome	49458-49489	8	0.75
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	266193-266224	8	0.75
NC_010610_3	3.6\|819868\|33\|NC_010610\|PILER-CR	819868-819900	33	NZ_CP050268	Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence	30871-30903	8	0.758
NC_010610_3	3.39\|820480\|32\|NC_010610\|CRISPRCasFinder,CRT	820480-820511	32	NZ_AP019010	Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence	61553-61584	8	0.75
NC_010610_3	3.39\|820480\|32\|NC_010610\|CRISPRCasFinder,CRT	820480-820511	32	NZ_CP041128	Serratia marcescens strain WVU-005 plasmid pWVU-005-2, complete sequence	30785-30816	8	0.75
NC_010610_3	3.39\|820480\|32\|NC_010610\|CRISPRCasFinder,CRT	820480-820511	32	NZ_LT575491	Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence	77576-77607	8	0.75
NC_010610_3	3.39\|820480\|32\|NC_010610\|CRISPRCasFinder,CRT	820480-820511	32	NZ_CP027301	Serratia marcescens strain SGAir0764 plasmid unnamed_1	58479-58510	8	0.75
NC_010610_3	3.40\|820541\|32\|NC_010610\|CRISPRCasFinder,CRT	820541-820572	32	MK614706	Gammaproteobacteria virus GOV_bin_2604, complete genome	41635-41666	8	0.75
NC_010610_5	5.3\|1393666\|33\|NC_010610\|CRT,PILER-CR	1393666-1393698	33	NZ_KM017071	Sphingomonas sp. JE1 plasmid pJE1, complete sequence	128926-128958	8	0.758
NC_010610_2	2.1\|816942\|33\|NC_010610\|PILER-CR	816942-816974	33	MN694574	Marine virus AFVG_250M706, complete genome	47561-47593	9	0.727
NC_010610_2	2.9\|817430\|33\|NC_010610\|PILER-CR	817430-817462	33	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	29508-29540	9	0.727
NC_010610_2	2.12\|817613\|33\|NC_010610\|PILER-CR	817613-817645	33	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	72670-72702	9	0.727
NC_010610_2	2.12\|817613\|33\|NC_010610\|PILER-CR	817613-817645	33	NC_048682	Raoultella phage Ro1, complete genome	55618-55650	9	0.727
NC_010610_2	2.12\|817613\|33\|NC_010610\|PILER-CR	817613-817645	33	MK024806	Proteus phage Mydo, complete genome	66700-66732	9	0.727
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	333448-333479	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	261691-261722	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	250958-250989	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	327426-327457	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	261691-261722	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	327426-327457	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	327426-327457	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	327426-327457	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	327751-327782	9	0.719
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	KX066068	Pseudomonas phage VSW-3, complete genome	17880-17911	9	0.719
NC_010610_3	3.32\|820053\|32\|NC_010610\|CRISPRCasFinder,CRT	820053-820084	32	NC_007713	Sodalis glossinidius str. 'morsitans' plasmid pSG1, complete sequence	21416-21447	9	0.719
NC_010610_3	3.32\|820053\|32\|NC_010610\|CRISPRCasFinder,CRT	820053-820084	32	NZ_LN854558	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence	19646-19677	9	0.719
NC_010610_3	3.32\|820053\|32\|NC_010610\|CRISPRCasFinder,CRT	820053-820084	32	NZ_LN854558	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence	28859-28890	9	0.719
NC_010610_3	3.32\|820053\|32\|NC_010610\|CRISPRCasFinder,CRT	820053-820084	32	NC_007182	Sodalis glossinidius pSG1 plasmid from Glossina austeni	73595-73626	9	0.719
NC_010610_3	3.32\|820053\|32\|NC_010610\|CRISPRCasFinder,CRT	820053-820084	32	NC_007183	Sodalis glossinidius pSG1 plasmid from Glossina palpalis palpalis	73595-73626	9	0.719
NC_010610_3	3.32\|820053\|32\|NC_010610\|CRISPRCasFinder,CRT	820053-820084	32	NZ_AP019532	Serratia symbiotica strain IS plasmid pSsyis1, complete sequence	15835-15866	9	0.719
NC_010610_3	3.35\|820236\|32\|NC_010610\|CRISPRCasFinder,CRT	820236-820267	32	JQ691611	Cronobacter phage CR9, complete genome	24017-24048	9	0.719
NC_010610_3	3.40\|820541\|32\|NC_010610\|CRISPRCasFinder,CRT	820541-820572	32	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	17719-17750	9	0.719
NC_010610_3	3.40\|820541\|32\|NC_010610\|CRISPRCasFinder,CRT	820541-820572	32	MN855617	Myoviridae sp. isolate 527, complete genome	7579-7610	9	0.719
NC_010610_3	3.44\|820785\|32\|NC_010610\|CRISPRCasFinder,CRT	820785-820816	32	NZ_CP045320	Roseivivax sp. THAF197b plasmid pTHAF197b_b, complete sequence	37576-37607	9	0.719
NC_010610_3	3.44\|820785\|32\|NC_010610\|CRISPRCasFinder,CRT	820785-820816	32	NC_022753	Mycobacterium phage Fredward, complete genome	44508-44539	9	0.719
NC_010610_2	2.34\|817736\|32\|NC_010610\|CRISPRCasFinder,CRT	817736-817767	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	424562-424593	10	0.688
NC_010610_3	3.29\|819869\|32\|NC_010610\|CRISPRCasFinder,CRT	819869-819900	32	MT366947	Bacillus phage Hyb2phi3Ts-SPbeta, complete genome	52532-52563	10	0.688
NC_010610_3	3.29\|819869\|32\|NC_010610\|CRISPRCasFinder,CRT	819869-819900	32	KY030782	Bacillus phage phi3T, complete genome	52532-52563	10	0.688
NC_010610_3	3.29\|819869\|32\|NC_010610\|CRISPRCasFinder,CRT	819869-819900	32	MT366946	Bacillus phage Hyb1phi3Ts-SPbeta, complete genome	55131-55162	10	0.688
NC_010610_3	3.29\|819869\|32\|NC_010610\|CRISPRCasFinder,CRT	819869-819900	32	CP052843	Bacillus phage Hybphi3Ts, partial sequence	28905-28936	10	0.688
NC_010610_3	3.29\|819869\|32\|NC_010610\|CRISPRCasFinder,CRT	819869-819900	32	MT366945	Bacillus phage phi3Ts, complete genome	52532-52563	10	0.688
NC_010610_3	3.40\|820541\|32\|NC_010610\|CRISPRCasFinder,CRT	820541-820572	32	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	1057033-1057064	10	0.688
NC_010610_2	2.21\|816943\|32\|NC_010610\|CRISPRCasFinder,CRT	816943-816974	32	DQ003637	Listeria phage A500, complete genome	26381-26412	11	0.656
NC_010610_2	2.21\|816943\|32\|NC_010610\|CRISPRCasFinder,CRT	816943-816974	32	MN694796	Marine virus AFVG_250M264, complete genome	13440-13471	11	0.656
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_KX009060	Pseudomonas syringae pv. actinidiae strain RT594 plasmid pUR_RT594, complete sequence	45895-45926	11	0.656
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_KX009063	Pseudomonas syringae pv. actinidiae strain RT811 plasmid pPU_RT811, complete sequence	17841-17872	11	0.656
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_KX009062	Pseudomonas syringae pv. actinidiae strain B4A plasmid pUR_B4A, complete sequence	40223-40254	11	0.656
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_KX009061	Pseudomonas syringae pv. actinidiae strain RT652 plasmid pUR_RT652, complete sequence	51956-51987	11	0.656
NC_010610_2	2.33\|817675\|32\|NC_010610\|CRISPRCasFinder,CRT	817675-817706	32	NZ_CP017011	Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180b, complete sequence	49231-49262	11	0.656
NC_010610_3	3.25\|819625\|32\|NC_010610\|CRISPRCasFinder,CRT	819625-819656	32	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	121554-121585	11	0.656

1. spacer 3.12|820235|33|NC_010610|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 0, identity: 1.0

tcagtgcccacccggtggacgttagctctatcc	CRISPR spacer
tcagtgcccacccggtggacgttagctctatcc	Protospacer
*********************************

2. spacer 3.35|820236|32|NC_010610|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 0, identity: 1.0

cagtgcccacccggtggacgttagctctatcc	CRISPR spacer
cagtgcccacccggtggacgttagctctatcc	Protospacer
********************************

3. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP015861 (Lactobacillus plantarum strain LZ227 plasmid LZ227p3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

4. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP035135 (Lactobacillus plantarum strain SRCM103311 plasmid unnamed4) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

5. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP019032 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

6. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

7. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

8. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

9. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

10. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP032360 (Lactobacillus plantarum strain ZFM55 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

11. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP018212 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

12. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP043940 (Lactobacillus nenjiangensis strain SH-Y15 plasmid pHY011, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

13. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP032643 (Lactobacillus plantarum strain ZFM9 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

14. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

15. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP018179 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

16. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP018182 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

17. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP028244 (Lactobacillus plantarum strain SRCM101518 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

18. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP054261 (Lactobacillus plantarum strain TCI507 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

19. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

20. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP032753 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

21. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP011405 (Lactobacillus salivarius str. Ren plasmid pR2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

22. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

23. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

24. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP032745 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

25. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP012651 (Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK03, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

26. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_LN898145 (Lactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

27. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

28. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

29. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP013152 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-4, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

30. spacer 3.9|820052|33|NC_010610|PILER-CR matches to HQ141410 (Lactobacillus phage LF1, complete genome) position: , mismatch: 1, identity: 0.97

ttgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
ttgctgacaaggtatttaagaacgccgagaaac	Protospacer
********************.************

31. spacer 3.11|820174|33|NC_010610|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 1, identity: 0.97

ttaagccgtttagccattgcagcgttgctcata	CRISPR spacer
ttaagccgtttagccattgcagcattgctcata	Protospacer
***********************.*********

32. spacer 3.32|820053|32|NC_010610|CRISPRCasFinder,CRT matches to HQ141410 (Lactobacillus phage LF1, complete genome) position: , mismatch: 1, identity: 0.969

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
tgctgacaaggtatttaagaacgccgagaaac	Protospacer
*******************.************

33. spacer 3.34|820175|32|NC_010610|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 1, identity: 0.969

taagccgtttagccattgcagcgttgctcata	CRISPR spacer
taagccgtttagccattgcagcattgctcata	Protospacer
**********************.*********

34. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP054658 (Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence) position: , mismatch: 1, identity: 0.968

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtatacaagttaaa	Protospacer
*******************.***********

35. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NC_021503 (Lactobacillus reuteri I5007 plasmid pLRI01, complete sequence) position: , mismatch: 1, identity: 0.968

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtatacaagttaaa	Protospacer
*******************.***********

36. spacer 2.13|817674|33|NC_010610|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 2, identity: 0.939

ccagataagatgacgatcatcacgaccaacaac	CRISPR spacer
caagacaagatgacgatcatcacgaccaacaac	Protospacer
* ***.***************************

37. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 2, identity: 0.938

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
aagacaagatgacgatcatcacgaccaacaac	Protospacer
 ***.***************************

38. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP040502 (Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
taggtctagaataaaaagtgtacaagttaaa	Protospacer
*.**.**************************

39. spacer 2.23|817065|32|NC_010610|CRISPRCasFinder,CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 3, identity: 0.906

atcagcttgtgctgcacttgccgatgatttag	CRISPR spacer
accagcttgtgctacactcgccgatgatttag	Protospacer
*.***********.****.*************

40. spacer 2.32|817614|32|NC_010610|CRISPRCasFinder,CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 3, identity: 0.906

taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
tgaatacttaaactacgaggtcaatgaaaaag	Protospacer
*.**************.*****.*********

41. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NZ_CP045730 (Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.903

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagtctta	Protospacer
***************************.  *

42. spacer 2.3|817064|33|NC_010610|PILER-CR matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 4, identity: 0.879

tatcagcttgtgctgcacttgccgatgatttag	CRISPR spacer
caccagcttgtgctacactcgccgatgatttag	Protospacer
.*.***********.****.*************

43. spacer 2.12|817613|33|NC_010610|PILER-CR matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 4, identity: 0.879

ttaaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
ctgaatacttaaactacgaggtcaatgaaaaag	Protospacer
.*.**************.*****.*********

44. spacer 3.16|820479|33|NC_010610|PILER-CR matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 4, identity: 0.879

cgacgttcataccgaggccattgtcagtccaag	CRISPR spacer
cgacgttcataccaagaccattgtcagtccatt	Protospacer
*************.**.**************

45. spacer 3.39|820480|32|NC_010610|CRISPRCasFinder,CRT matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 4, identity: 0.875

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
gacgttcataccaagaccattgtcagtccatt	Protospacer
************.**.**************

46. spacer 3.45|820846|32|NC_010610|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 4, identity: 0.875

taagtattcttaaaggaggtcacacattactg	CRISPR spacer
taattattcttaaaggaggtcacacatcattc	Protospacer
*** ***********************.*.*

47. spacer 2.23|817065|32|NC_010610|CRISPRCasFinder,CRT matches to MG592499 (Vibrio phage 1.124.O._10N.286.49.B1, partial genome) position: , mismatch: 5, identity: 0.844

--atcagcttgtgctgcacttgccgatgatttag	CRISPR spacer
agatcggct--tgctgcacttgccaatggtttag	Protospacer
  ***.***  *************.***.*****

48. spacer 3.22|820845|33|NC_010610|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 5, identity: 0.848

ttaagtattcttaaaggaggtcacacattactg	CRISPR spacer
gtaattattcttaaaggaggtcacacatcattc	Protospacer
 *** ***********************.*.*

49. spacer 3.34|820175|32|NC_010610|CRISPRCasFinder,CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 5, identity: 0.844

taagccgtttagccattgcagcgttgctcata	CRISPR spacer
tgaacctcttagccattgcggcgttgctcata	Protospacer
*.*.** .***********.************

50. spacer 2.37|817920|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

51. spacer 2.37|817920|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

52. spacer 2.37|817920|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

53. spacer 2.37|817920|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

54. spacer 3.29|819869|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP050268 (Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence) position: , mismatch: 6, identity: 0.812

agctaat---gatttctttggtagcgtcagccagg	CRISPR spacer
---taattgggatatctttggtagcggcagccagt	Protospacer
   ****   *** ************ *******

55. spacer 3.36|820297|32|NC_010610|CRISPRCasFinder,CRT matches to NC_025829 (Shigella phage pSs-1, complete genome) position: , mismatch: 6, identity: 0.812

accggcg--ggcgaagttggtcaacctcgtcatt	CRISPR spacer
--tggcggtggtgaagttggtcaacctggtcaat	Protospacer
  .****  **.*************** **** *

56. spacer 2.22|817004|32|NC_010610|CRISPRCasFinder,CRT matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 7, identity: 0.781

ttttgcagggttcgctagtgatggcaaaggtg	CRISPR spacer
gctagtagggttcgttaatgatggcaaaggcg	Protospacer
 .* *.********.**.************.*

57. spacer 2.32|817614|32|NC_010610|CRISPRCasFinder,CRT matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 7, identity: 0.781

-----taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
gctcataa-----taatctacaaggtcgatgaaagag	Protospacer
     ***     *** *****************.**

58. spacer 2.32|817614|32|NC_010610|CRISPRCasFinder,CRT matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 7, identity: 0.781

-----taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
gctcataa-----taatctacaaggtcgatgaaagag	Protospacer
     ***     *** *****************.**

59. spacer 2.32|817614|32|NC_010610|CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 7, identity: 0.781

-----taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
gctcataa-----taatctacaaggtcgatgaaagag	Protospacer
     ***     *** *****************.**

60. spacer 2.38|817981|32|NC_010610|CRISPRCasFinder,CRT matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 7, identity: 0.781

caacaaagcggcaatcaacagcaaggaccagc	CRISPR spacer
ccagaaagcggcaatcgacaggaaggacgacg	Protospacer
* * ************.**** ****** *

61. spacer 3.24|819564|32|NC_010610|CRISPRCasFinder,CRT matches to GU943074 (Uncultured phage MedDCM-OCT-S08-C964 genomic sequence) position: , mismatch: 7, identity: 0.781

-acaaccaactgcaaacggcaacccaacagatc	CRISPR spacer
tggaattga-tgcaaacggcaatccaacagatc	Protospacer
 . **...* ************.**********

62. spacer 5.5|1393667|32|NC_010610|CRISPRCasFinder matches to NZ_KM017071 (Sphingomonas sp. JE1 plasmid pJE1, complete sequence) position: , mismatch: 7, identity: 0.781

aagccaaggcttgacgaacttccaagcaaata	CRISPR spacer
cagccaacgcttgacgaacttgcaaacgagca	Protospacer
 ****** ************* ***.*.*..*

63. spacer 2.2|817003|33|NC_010610|PILER-CR matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 8, identity: 0.758

tttttgcagggttcgctagtgatggcaaaggtg	CRISPR spacer
agctagtagggttcgttaatgatggcaaaggcg	Protospacer
  .* *.********.**.************.*

64. spacer 2.5|817186|33|NC_010610|PILER-CR matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 8, identity: 0.758

catcttgcctacgattgacacctcaaccggtga	CRISPR spacer
catcttccctactattgacacctcaaaattttt	Protospacer
****** ***** *************    *

65. spacer 2.18|817980|33|NC_010610|PILER-CR matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 8, identity: 0.758

ccaacaaagcggcaatcaacagcaaggaccagc	CRISPR spacer
accagaaagcggcaatcgacaggaaggacgacg	Protospacer
 * * ************.**** ****** *

66. spacer 2.21|816943|32|NC_010610|CRISPRCasFinder,CRT matches to MN694574 (Marine virus AFVG_250M706, complete genome) position: , mismatch: 8, identity: 0.75

taaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
taaaggagaatactatgaataacataggtgta	Protospacer
****************** .**** *.. .*

67. spacer 2.25|817187|32|NC_010610|CRISPRCasFinder,CRT matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 8, identity: 0.75

atcttgcctacgattgacacctcaaccggtga	CRISPR spacer
atcttccctactattgacacctcaaaattttt	Protospacer
***** ***** *************    *

68. spacer 2.29|817431|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acacaataagcgttaatactaaaaataacggt	CRISPR spacer
ttaaaataaccgttaatattaaaaataacccg	Protospacer
 .* ***** ********.**********

69. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349325 (Cyanophage S-RIM12 isolate W1_24_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

70. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to NC_049384 (Enterobacter phage EspM4VN DNA, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cgctgcaagtgtatcgactacaacttcatcga	Protospacer
* * *.   ****** *** ************

71. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349326 (Cyanophage S-RIM12 isolate WH_05_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

72. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349327 (Cyanophage S-RIM12 isolate WH_07_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

73. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349322 (Cyanophage S-RIM12 isolate Sn_31_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

74. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349310 (Cyanophage S-RIM12 isolate RW_01_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

75. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349321 (Cyanophage S-RIM12 isolate Sn_07_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

76. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

77. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349308 (Cyanophage S-RIM12 isolate Np_15_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

78. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to LC373201 (Enterobacter phage phiEM4 DNA, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cgctgcaagtgtatcgactacaacttcatcga	Protospacer
* * *.   ****** *** ************

79. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349311 (Cyanophage S-RIM12 isolate RW_04_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

80. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349323 (Cyanophage S-RIM12 isolate W1_08_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

81. spacer 2.30|817492|32|NC_010610|CRISPRCasFinder,CRT matches to KX349313 (Cyanophage S-RIM12 isolate RW_06_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

82. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 8, identity: 0.75

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagatgacgatcatcacgacgatgatg	Protospacer
. ** ******************** *  *

83. spacer 3.6|819868|33|NC_010610|PILER-CR matches to NZ_CP050268 (Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence) position: , mismatch: 8, identity: 0.758

-tagctaatgatttctttggtagcgtcagccagg	CRISPR spacer
ataattgg-gatatctttggtagcggcagccagt	Protospacer
 **..*.. *** ************ *******

84. spacer 3.39|820480|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_AP019010 (Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

85. spacer 3.39|820480|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP041128 (Serratia marcescens strain WVU-005 plasmid pWVU-005-2, complete sequence) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

86. spacer 3.39|820480|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_LT575491 (Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

87. spacer 3.39|820480|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP027301 (Serratia marcescens strain SGAir0764 plasmid unnamed_1) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

88. spacer 3.40|820541|32|NC_010610|CRISPRCasFinder,CRT matches to MK614706 (Gammaproteobacteria virus GOV_bin_2604, complete genome) position: , mismatch: 8, identity: 0.75

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
atattgcatactcttgaaattgactttctaaa	Protospacer
*.** ****** ************* .   **

89. spacer 5.3|1393666|33|NC_010610|CRT,PILER-CR matches to NZ_KM017071 (Sphingomonas sp. JE1 plasmid pJE1, complete sequence) position: , mismatch: 8, identity: 0.758

caagccaaggcttgacgaacttccaagcaaata	CRISPR spacer
gcagccaacgcttgacgaacttgcaaacgagca	Protospacer
  ****** ************* ***.*.*..*

90. spacer 2.1|816942|33|NC_010610|PILER-CR matches to MN694574 (Marine virus AFVG_250M706, complete genome) position: , mismatch: 9, identity: 0.727

ttaaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
ctaaaggagaatactatgaataacataggtgta	Protospacer
.****************** .**** *.. .*

91. spacer 2.9|817430|33|NC_010610|PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tacacaataagcgttaatactaaaaataacggt	CRISPR spacer
cttaaaataaccgttaatattaaaaataacccg	Protospacer
. .* ***** ********.**********

92. spacer 2.12|817613|33|NC_010610|PILER-CR matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 9, identity: 0.727

ttaaatact-----taaactacaaggtcgatgaaaaag	CRISPR spacer
-----cgctcataataatctacaaggtcgatgaaagag	Protospacer
     ..**     *** *****************.**

93. spacer 2.12|817613|33|NC_010610|PILER-CR matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 9, identity: 0.727

ttaaatact-----taaactacaaggtcgatgaaaaag	CRISPR spacer
-----cgctcataataatctacaaggtcgatgaaagag	Protospacer
     ..**     *** *****************.**

94. spacer 2.12|817613|33|NC_010610|PILER-CR matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 9, identity: 0.727

ttaaatact-----taaactacaaggtcgatgaaaaag	CRISPR spacer
-----cgctcataataatctacaaggtcgatgaaagag	Protospacer
     ..**     *** *****************.**

95. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

96. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

97. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

98. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

99. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

100. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

101. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

102. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

103. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

104. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to KX066068 (Pseudomonas phage VSW-3, complete genome) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
cactgggcgtgccgatcatcaagaccaacaac	Protospacer
**   .. .** ********* **********

105. spacer 3.32|820053|32|NC_010610|CRISPRCasFinder,CRT matches to NC_007713 (Sodalis glossinidius str. 'morsitans' plasmid pSG1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

106. spacer 3.32|820053|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_LN854558 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

107. spacer 3.32|820053|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_LN854558 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

108. spacer 3.32|820053|32|NC_010610|CRISPRCasFinder,CRT matches to NC_007182 (Sodalis glossinidius pSG1 plasmid from Glossina austeni) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

109. spacer 3.32|820053|32|NC_010610|CRISPRCasFinder,CRT matches to NC_007183 (Sodalis glossinidius pSG1 plasmid from Glossina palpalis palpalis) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

110. spacer 3.32|820053|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_AP019532 (Serratia symbiotica strain IS plasmid pSsyis1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

111. spacer 3.35|820236|32|NC_010610|CRISPRCasFinder,CRT matches to JQ691611 (Cronobacter phage CR9, complete genome) position: , mismatch: 9, identity: 0.719

cagtgcccacccggtggacgtt----agctctatcc	CRISPR spacer
cagtgcccaccaggcggacgttataaagcgtc----	Protospacer
*********** **.*******    *** ..

112. spacer 3.40|820541|32|NC_010610|CRISPRCasFinder,CRT matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 9, identity: 0.719

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
gagtgcgttacgcttgaaattgactatggtat	Protospacer
. .**   ******************.*.**

113. spacer 3.40|820541|32|NC_010610|CRISPRCasFinder,CRT matches to MN855617 (Myoviridae sp. isolate 527, complete genome) position: , mismatch: 9, identity: 0.719

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
aatcggcatacgctttaaagtgactactcaag	Protospacer
*  .*********** *** *******   *.

114. spacer 3.44|820785|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP045320 (Roseivivax sp. THAF197b plasmid pTHAF197b_b, complete sequence) position: , mismatch: 9, identity: 0.719

tggaagagctggacgttgtcaaatgacgggaa	CRISPR spacer
ttccacggctggacgttctcgaatgacgggcg	Protospacer
*   * .********** **.********* .

115. spacer 3.44|820785|32|NC_010610|CRISPRCasFinder,CRT matches to NC_022753 (Mycobacterium phage Fredward, complete genome) position: , mismatch: 9, identity: 0.719

tggaagagctggacgttgtcaaatgacgggaa	CRISPR spacer
gagaagatctggacgttgccaaatggtgagcc	Protospacer
 .***** **********.******..*.*

116. spacer 2.34|817736|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

aggtggcaataggccatccccaggggtctccc	CRISPR spacer
aggtggcaatatgccagccccagcccatctac	Protospacer
*********** **** ******    ... *

117. spacer 3.29|819869|32|NC_010610|CRISPRCasFinder,CRT matches to MT366947 (Bacillus phage Hyb2phi3Ts-SPbeta, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

118. spacer 3.29|819869|32|NC_010610|CRISPRCasFinder,CRT matches to KY030782 (Bacillus phage phi3T, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

119. spacer 3.29|819869|32|NC_010610|CRISPRCasFinder,CRT matches to MT366946 (Bacillus phage Hyb1phi3Ts-SPbeta, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

120. spacer 3.29|819869|32|NC_010610|CRISPRCasFinder,CRT matches to CP052843 (Bacillus phage Hybphi3Ts, partial sequence) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

121. spacer 3.29|819869|32|NC_010610|CRISPRCasFinder,CRT matches to MT366945 (Bacillus phage phi3Ts, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

122. spacer 3.40|820541|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 10, identity: 0.688

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
cagcttcatacgcttgaaatagacaacgaaag	Protospacer
  ..  ************** *** **** *.

123. spacer 2.21|816943|32|NC_010610|CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 11, identity: 0.656

taaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
attcattgaatattatgagcaacaaaaaaaac	Protospacer
    .  *****.***** *********** .

124. spacer 2.21|816943|32|NC_010610|CRISPRCasFinder,CRT matches to MN694796 (Marine virus AFVG_250M264, complete genome) position: , mismatch: 11, identity: 0.656

taaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
ggtgcaagaatactatgatgatcaaaaaatac	Protospacer
 . . .************* * *******  .

125. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_KX009060 (Pseudomonas syringae pv. actinidiae strain RT594 plasmid pUR_RT594, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

126. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_KX009063 (Pseudomonas syringae pv. actinidiae strain RT811 plasmid pPU_RT811, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

127. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_KX009062 (Pseudomonas syringae pv. actinidiae strain B4A plasmid pUR_B4A, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

128. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_KX009061 (Pseudomonas syringae pv. actinidiae strain RT652 plasmid pUR_RT652, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

129. spacer 2.33|817675|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP017011 (Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180b, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

130. spacer 3.25|819625|32|NC_010610|CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 11, identity: 0.656

acaaagatgaacttgtgaaaatgtctttcttg	CRISPR spacer
taaaagatgaacttgtaaaaatttccaataaa	Protospacer
  **************.***** **.  .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12872 : 23173

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003682308.1\|12872_14276_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	2.7e-110	49.3
WP_012390655.1\|14359_15535_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.7e-44	28.7
WP_003682310.1\|15546_15879_+	hypothetical protein	NA	NA	NA	NA
WP_003685635.1\|16334_17042_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.9e-42	39.8
WP_012390656.1\|17053_18913_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.7e-35	35.6
WP_012390657.1\|18896_20195_+	hypothetical protein	NA	NA	NA	NA
WP_012390658.1\|20196_20997_+	two-component system regulatory protein YycI	NA	NA	NA	NA
WP_012390659.1\|21011_21827_+	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	4.1e-34	33.2
WP_012390660.1\|21901_23173_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.8e-19	29.3

DBSCAN-SWA_2

36472 : 96560

Staphylococcus_phage(11.76%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012390670.1\|36472_38566_+\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	3.0e-121	40.6
WP_012390672.1\|38866_40327_+	cardiolipin synthase	NA	NA	NA	NA
WP_012390673.1\|40809_44547_+	ATP-dependent helicase/deoxyribonuclease subunit B	NA	NA	NA	NA
WP_012390674.1\|44553_48567_+	helicase-exonuclease AddAB subunit AddA	S5MMD7	Bacillus_phage	3.3e-12	22.4
WP_012390675.1\|48566_49430_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	4.3e-58	46.4
WP_012390676.1\|49668_51294_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_003682345.1\|51587_51944_-	arsenate reductase family protein	NA	NA	NA	NA
WP_012390677.1\|51981_53097_-	ABC transporter permease	NA	NA	NA	NA
WP_012390678.1\|53089_53821_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-25	32.7
WP_015638428.1\|53959_54514_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003685683.1\|55766_57056_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	3.9e-71	36.2
WP_003685686.1\|59047_59587_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_003685689.1\|59705_60437_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_012390681.1\|60436_61063_+	orotate phosphoribosyltransferase	S4VS55	Pandoravirus	2.8e-35	38.6
WP_012390683.1\|62124_63411_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_021350374.1\|63750_64143_-	hypothetical protein	NA	NA	NA	NA
WP_003685694.1\|64285_65824_+	glycosyltransferase	NA	NA	NA	NA
WP_012390684.1\|65823_67320_+	accessory Sec system glycosyltransferase Asp1	NA	NA	NA	NA
WP_012390685.1\|67729_68572_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012390686.1\|68597_69662_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-28	35.8
WP_003682378.1\|69654_70356_+	ABC transporter permease	NA	NA	NA	NA
WP_012390687.1\|70481_71630_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_041807591.1\|71929_73354_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	7.3e-71	33.9
WP_012390689.1\|73908_74346_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	2.4e-49	71.0
WP_012390690.1\|74342_75506_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	6.9e-160	71.4
WP_012390691.1\|76376_77669_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_003682388.1\|77682_77919_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_012390693.1\|77948_79175_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	2.6e-24	31.2
WP_003682392.1\|79174_80704_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9KZV5	Tupanvirus	5.3e-35	25.8
WP_015638446.1\|80718_80850_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
WP_003682397.1\|81075_82209_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_012390694.1\|82205_85310_+	SMC family ATPase	NA	NA	NA	NA
WP_012390695.1\|85597_86896_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.2e-93	48.8
WP_012390696.1\|87381_88395_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003682407.1\|88652_89906_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	1.3e-84	42.2
WP_041807598.1\|90373_91828_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_012390698.1\|91831_92575_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-33	41.1
WP_012390699.1\|93081_94455_+	amino acid permease	NA	NA	NA	NA
WP_012390700.1\|94778_96029_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	5.3e-57	36.0
WP_012390701.1\|96107_96560_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.8e-32	51.5

DBSCAN-SWA_3

537218 : 575693

Lactobacillus_phage(83.33%)

tail,head,terminase,capsid,portal,integrase

attL 530461:530476|attR 561076:561091

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
530461:530476	attL	NA	NA	NA	NA
WP_003682770.1\|537218_538064_-	YitT family protein	M1Q1P6	Streptococcus_phage	6.4e-14	28.3
WP_041807700.1\|538507_538828_+\|head	head protein	Q6SED4	Lactobacillus_prophage	2.1e-26	53.3
WP_041807702.1\|538871_539063_+	hypothetical protein	NA	NA	NA	NA
WP_021350214.1\|539171_539339_+	hypothetical protein	NA	NA	NA	NA
WP_012390931.1\|539412_540534_-\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	1.8e-85	45.6
WP_021815780.1\|540611_541139_-	hypothetical protein	NA	NA	NA	NA
WP_021815781.1\|541145_541604_-	hypothetical protein	A0A059T5E8	Listeria_phage	8.7e-18	32.7
WP_021815782.1\|541616_541952_-	helix-turn-helix transcriptional regulator	B8R672	Lactobacillus_phage	1.4e-09	52.4
WP_021815783.1\|542085_542322_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021815784.1\|542333_542654_+	hypothetical protein	B8R678	Lactobacillus_phage	1.2e-05	37.2
WP_021815786.1\|542796_542964_+	hypothetical protein	E9LUM1	Lactobacillus_phage	1.5e-12	80.0
WP_012390932.1\|542997_543198_+	hypothetical protein	D2KRE0	Lactobacillus_phage	1.8e-20	78.8
WP_012390933.1\|543200_543686_+	siphovirus Gp157 family protein	A0A0A1EL06	Lactobacillus_phage	8.3e-27	44.6
WP_012390934.1\|543710_544391_+	AAA family ATPase	A0A286QRM1	Streptococcus_phage	2.9e-70	56.7
WP_012390935.1\|544383_545730_+	DEAD/DEAH box helicase family protein	Q9T0Y3	Lactobacillus_phage	2.4e-148	58.8
WP_012390936.1\|545749_546310_+	DUF669 domain-containing protein	Q9T0Y2	Lactobacillus_phage	5.4e-46	49.5
WP_012390937.1\|546375_548685_+	primase	A0A0P0IX98	Lactobacillus_phage	2.0e-256	55.9
WP_012390938.1\|548985_549330_+	VRR-NUC domain-containing protein	A0A0A1ENT6	Lactobacillus_phage	2.5e-41	67.9
WP_021815790.1\|549587_550037_+	hypothetical protein	A0A0A1ERD2	Lactobacillus_phage	7.0e-44	61.1
WP_021815791.1\|550042_550501_+	hypothetical protein	A0A0A1EL23	Lactobacillus_phage	4.3e-57	69.1
WP_031265194.1\|550933_551746_+	hypothetical protein	NA	NA	NA	NA
WP_021815792.1\|551834_552341_+	hypothetical protein	B8R694	Lactobacillus_phage	5.1e-43	57.2
WP_012390940.1\|552536_552998_+\|terminase	phage terminase small subunit P27 family	B8R648	Lactobacillus_phage	1.1e-39	52.3
WP_014562226.1\|552997_554899_+\|terminase	terminase large subunit	B8R649	Lactobacillus_phage	6.2e-243	63.2
WP_012390942.1\|554913_555096_+	hypothetical protein	NA	NA	NA	NA
WP_012390943.1\|555095_556316_+\|portal	phage portal protein	B8R650	Lactobacillus_phage	4.3e-96	48.5
WP_031265195.1\|556248_558027_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.0e-134	53.0
WP_012390945.1\|558047_558350_+	hypothetical protein	NA	NA	NA	NA
WP_031265196.1\|558321_558690_+\|head	phage head closure protein	B8R652	Lactobacillus_phage	5.7e-20	43.2
WP_031265197.1\|558682_559120_+	hypothetical protein	A0A2P0ZLE6	Lactobacillus_phage	4.1e-25	48.3
WP_021815795.1\|559119_559491_+	DUF806 family protein	NA	NA	NA	NA
WP_012390947.1\|559502_560126_+	hypothetical protein	NA	NA	NA	NA
WP_012390948.1\|560192_560522_+	hypothetical protein	NA	NA	NA	NA
WP_012390949.1\|560726_564926_+	tape measure protein	E9LUR1	Lactobacillus_phage	2.9e-27	41.7
561076:561091	attR	NA	NA	NA	NA
WP_012390950.1\|564988_565828_+\|tail	phage tail family protein	A0A2H4J4B7	uncultured_Caudovirales_phage	1.1e-13	25.2
WP_014562228.1\|565840_566875_+	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_012390952.1\|566871_568434_+\|tail	phage tail protein	E9LUJ4	Lactobacillus_phage	6.0e-34	25.4
WP_012390953.1\|568420_571915_+\|tail	tail fiber domain-containing protein	E9LUJ5	Lactobacillus_phage	1.1e-59	39.2
WP_021815797.1\|571942_572119_+	hypothetical protein	NA	NA	NA	NA
WP_012390955.1\|572121_572379_+	hypothetical protein	NA	NA	NA	NA
WP_021815798.1\|572392_572869_+	hypothetical protein	NA	NA	NA	NA
WP_021815799.1\|572861_573245_+	hypothetical protein	NA	NA	NA	NA
WP_012390956.1\|573256_573745_+	hypothetical protein	NA	NA	NA	NA
WP_134771495.1\|573827_574148_+	hypothetical protein	D2KRC5	Lactobacillus_phage	7.9e-26	52.8
WP_021815801.1\|574144_574579_+	hypothetical protein	A0A0A1ELI5	Lactobacillus_phage	4.3e-14	40.9
WP_012390957.1\|574529_575693_+	LysM peptidoglycan-binding domain-containing protein	A0A075KJD2	Lactobacillus_phage	1.6e-39	39.1

DBSCAN-SWA_4

750756 : 861183

Lactobacillus_phage(35.14%)

transposase,tRNA,integrase,protease

attL 752492:752506|attR 764024:764038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012391037.1\|750756_751212_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-32	50.0
WP_012391038.1\|751285_752536_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	1.4e-57	37.3
752492:752506	attL	NA	NA	NA	NA
WP_012391039.1\|752967_753672_+	hypothetical protein	NA	NA	NA	NA
WP_012391040.1\|753792_753957_+	hypothetical protein	NA	NA	NA	NA
WP_004563375.1\|753993_754224_+	hypothetical protein	NA	NA	NA	NA
WP_012391041.1\|755099_756485_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_004563377.1\|756566_757007_-	hypothetical protein	NA	NA	NA	NA
WP_004563378.1\|757017_758007_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003682001.1\|758028_758475_-	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	2.4e-20	36.7
WP_004563379.1\|758592_759213_+	hypothetical protein	NA	NA	NA	NA
WP_031265229.1\|759457_760543_-\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	5.3e-106	53.5
WP_021815901.1\|760667_761243_-	hypothetical protein	NA	NA	NA	NA
WP_012391044.1\|761339_762074_-	potassium channel family protein	A0A1B0Y2S3	Lactobacillus_phage	5.9e-32	49.3
WP_021815902.1\|762108_762645_-	hypothetical protein	NA	NA	NA	NA
WP_012391045.1\|762661_762976_-	hypothetical protein	NA	NA	NA	NA
WP_021815903.1\|763054_763462_-	ImmA/IrrE family metallo-endopeptidase	E9LUL3	Lactobacillus_phage	3.4e-66	92.5
WP_012391046.1\|763465_763780_-	helix-turn-helix transcriptional regulator	E9LUL4	Lactobacillus_phage	1.8e-22	54.3
WP_021815904.1\|763960_764191_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
764024:764038	attR	NA	NA	NA	NA
WP_012391047.1\|764187_764973_+	Rha family transcriptional regulator	E9LUL6	Lactobacillus_phage	2.8e-96	66.9
WP_021815905.1\|764985_765141_+	hypothetical protein	NA	NA	NA	NA
WP_021815906.1\|765143_765455_-	hypothetical protein	NA	NA	NA	NA
WP_012391049.1\|765521_765704_+	hypothetical protein	NA	NA	NA	NA
WP_012391050.1\|765700_765928_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_012391051.1\|765986_766241_+	hypothetical protein	NA	NA	NA	NA
WP_021815907.1\|766252_766390_+	hypothetical protein	E9LUM0	Lactobacillus_phage	1.1e-05	60.0
WP_012391052.1\|766580_766790_+	hypothetical protein	E9LUM2	Lactobacillus_phage	4.8e-24	75.4
WP_021815909.1\|766792_767788_+	recombinase RecT	E9LUM3	Lactobacillus_phage	1.6e-112	79.7
WP_012391054.1\|767780_768629_+	PD-(D/E)XK nuclease-like domain-containing protein	E9LUM4	Lactobacillus_phage	2.3e-144	84.0
WP_012391055.1\|768628_769150_+	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	2.3e-30	54.3
WP_021815910.1\|769163_769856_+	helix-turn-helix domain-containing protein	Q8SDH3	Lactococcus_phage	3.3e-16	41.9
WP_021815911.1\|769926_770379_+	hypothetical protein	NA	NA	NA	NA
WP_021815912.1\|770493_770958_+	hypothetical protein	A0A0A1EL23	Lactobacillus_phage	3.2e-44	59.7
WP_012391056.1\|771188_772376_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.4e-37	29.1
WP_021815914.1\|774932_775415_+	replication initiation protein	NA	NA	NA	NA
WP_031265237.1\|776229_777462_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_012391059.1\|777940_781120_+	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA
WP_012391060.1\|783260_783845_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	8.2e-21	34.9
WP_012391061.1\|783998_785015_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	6.0e-35	33.1
WP_021815920.1\|785227_785737_+	DUF308 domain-containing protein	NA	NA	NA	NA
WP_144039609.1\|786090_786899_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012390892.1\|787294_788515_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.3e-94	46.0
WP_031265246.1\|789402_790557_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_012391063.1\|790737_791925_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.4e-37	29.1
WP_012391064.1\|792068_792932_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.7e-26	35.3
WP_012391065.1\|792933_793779_+	ABC transporter permease	NA	NA	NA	NA
WP_012391066.1\|793857_794109_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	4.6e-37	95.2
WP_012391067.1\|794303_795005_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	9.3e-128	97.9
WP_003586778.1\|795175_795574_+	DUF1722 domain-containing protein	NA	NA	NA	NA
WP_041807732.1\|797297_798407_-	hypothetical protein	NA	NA	NA	NA
WP_012391071.1\|798408_799851_-	hypothetical protein	NA	NA	NA	NA
WP_012391072.1\|799984_800863_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.2e-43	36.8
WP_012390892.1\|801928_803149_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.3e-94	46.0
WP_041807736.1\|803259_803547_+\|transposase	transposase	NA	NA	NA	NA
WP_012391073.1\|803570_804449_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.2e-42	36.4
WP_012391074.1\|805002_807726_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_012391056.1\|807927_809115_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.4e-37	29.1
WP_012391076.1\|810792_811386_+	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
WP_012391077.1\|811412_812495_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
WP_012391078.1\|812475_813183_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
WP_031265251.1\|813200_813842_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_012391080.1\|813855_814797_+	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_012390709.1\|815612_816629_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	2.4e-36	34.4
WP_012391081.1\|818215_819436_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.0e-93	45.7
WP_012391082.1\|821034_822255_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.4e-94	46.0
WP_041807739.1\|822806_823169_+	hypothetical protein	NA	NA	NA	NA
WP_012391635.1\|823363_824056_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_117939520.1\|823980_824931_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_008211256.1\|825046_825367_-	hypothetical protein	NA	NA	NA	NA
WP_012391085.1\|825495_826719_+	DUF389 domain-containing protein	NA	NA	NA	NA
WP_008211252.1\|826740_828075_-	APC family permease	NA	NA	NA	NA
WP_012391086.1\|828164_828854_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.5e-61	52.2
WP_012391087.1\|829092_830262_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
WP_003685235.1\|830610_831237_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	6.6e-16	52.9
WP_012391088.1\|831392_831644_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003685231.1\|831720_831948_+	YneF family protein	NA	NA	NA	NA
WP_003685229.1\|832015_832648_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_012391089.1\|832743_833496_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_012391090.1\|833488_833779_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_003681957.1\|833932_834712_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_003681955.1\|834802_835681_+	elongation factor Ts	NA	NA	NA	NA
WP_003681954.1\|835761_836487_+	UMP kinase	NA	NA	NA	NA
WP_003685219.1\|836486_837047_+	ribosome recycling factor	NA	NA	NA	NA
WP_015638805.1\|837179_837947_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.5e-17	34.6
WP_012391092.1\|837963_838752_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_012391093.1\|838773_840045_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_012391094.1\|840078_841800_+\|tRNA	proline--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.8e-07	25.9
WP_012391095.1\|841939_846283_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	1.7e-14	35.3
WP_012391096.1\|846405_847557_-	acetylornithine transaminase	A0A1V0SKB7	Klosneuvirus	5.6e-21	26.5
WP_012391097.1\|847569_848316_-	acetylglutamate kinase	NA	NA	NA	NA
WP_012391099.1\|849553_850579_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003685204.1\|850824_851895_+	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_012391100.1\|851887_854977_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_003681934.1\|855129_855609_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_003685200.1\|855628_856855_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_003681930.1\|856891_857194_+	YlxR family protein	NA	NA	NA	NA
WP_003681928.1\|857186_857510_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA
WP_012391101.1\|857514_859842_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.6e-20	24.6
WP_003685195.1\|859854_860217_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_003685192.1\|860286_861183_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

DBSCAN-SWA_5

880355 : 929536

Staphylococcus_phage(29.41%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041807745.1\|880355_880643_+\|transposase	transposase	NA	NA	NA	NA
WP_012391108.1\|880666_881545_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.7e-41	36.1
WP_041807747.1\|882385_882751_-	hypothetical protein	NA	NA	NA	NA
WP_041807749.1\|882876_883923_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_012391111.1\|883933_884521_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_003685154.1\|884558_886415_+	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	3.2e-135	45.5
WP_003681899.1\|886526_887687_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	4.8e-20	27.0
WP_012391112.1\|888092_888641_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_003681896.1\|888668_888836_+	hypothetical protein	NA	NA	NA	NA
WP_041807752.1\|888854_889421_+	imidazole glycerol phosphate synthase	NA	NA	NA	NA
WP_003685146.1\|889627_890467_+	histidinol-phosphatase HisJ	NA	NA	NA	NA
WP_012391113.1\|890788_891949_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_003685142.1\|891941_892556_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_012391114.1\|892557_893841_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_012391115.1\|893842_894427_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_012391116.1\|894426_895035_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_012391117.1\|895031_895757_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_012391118.1\|895746_896532_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_003685131.1\|896501_896819_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_003681874.1\|896820_897141_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_012391119.1\|897153_898239_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	5.8e-12	23.5
WP_012391120.1\|898306_900139_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	2.5e-23	26.1
WP_012391121.1\|900647_901151_-	hypothetical protein	NA	NA	NA	NA
WP_012391122.1\|901186_901810_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_012391123.1\|903182_904256_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.0e-88	47.9
WP_012391124.1\|904267_905443_+	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	8.4e-89	41.2
WP_003681856.1\|907372_907828_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_003681855.1\|907988_908459_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.0e-25	43.4
WP_012391128.1\|908451_909645_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.0e-97	48.6
WP_012391129.1\|909631_910240_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.3e-26	39.1
WP_012391130.1\|910239_911298_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.5e-41	33.9
WP_012391131.1\|911707_912040_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_021815982.1\|913019_913712_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_112297119.1\|913636_914587_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_024500853.1\|915103_915802_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	5.2e-22	31.3
WP_012391133.1\|916053_918024_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_012391134.1\|918038_920099_-	beta-galactosidase	NA	NA	NA	NA
WP_012391135.1\|920379_921381_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002822190.1\|921542_922025_-	DNA starvation/stationary phase protection protein	A0A2K9VCK5	Lactobacillus_phage	8.9e-13	31.1
WP_144039602.1\|923599_924508_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.9e-11	30.2
WP_012390776.1\|925100_926087_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.8e-45	36.9
WP_012391137.1\|926292_927465_+	cysteine desulfurase	NA	NA	NA	NA
WP_173031744.1\|927754_928210_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	1.6e-32	52.3
WP_012391139.1\|928285_929536_+\|transposase	transposase	A0A286QQE5	Streptococcus_phage	5.8e-56	37.0

DBSCAN-SWA_6

994582 : 1051728

Lactobacillus_phage(13.33%)

transposase,tRNA,integrase

attL 1019420:1019437|attR 1053329:1053346

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012391178.1\|994582_995425_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.4e-154	98.2
WP_012391179.1\|995478_995730_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	1.1e-35	92.8
WP_003684975.1\|996025_996586_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
WP_003681705.1\|996597_996783_+	DUF2273 domain-containing protein	NA	NA	NA	NA
WP_003681703.1\|996810_997353_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_003681701.1\|997367_997619_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_003681696.1\|997630_997771_+	hypothetical protein	NA	NA	NA	NA
WP_012391180.1\|998058_999345_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003683258.1\|999577_1000489_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_003684973.1\|1000691_1001699_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_003684971.1\|1001711_1003070_-	aspartate kinase	NA	NA	NA	NA
WP_003683241.1\|1003541_1004861_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_003683238.1\|1004885_1005599_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA
WP_012391181.1\|1005598_1006753_+	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA
WP_012391182.1\|1006755_1007691_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_003683232.1\|1007683_1008463_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_012391183.1\|1008487_1009672_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012391184.1\|1009686_1010739_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012391185.1\|1010874_1012215_+	ATPase	NA	NA	NA	NA
WP_012391186.1\|1012207_1012882_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_012391187.1\|1012890_1013592_+\|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	NA	NA	NA	NA
WP_003683218.1\|1013584_1014406_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_003683215.1\|1014425_1015667_+	peptidase T	NA	NA	NA	NA
WP_003683213.1\|1015738_1015966_-	DUF2929 family protein	NA	NA	NA	NA
WP_012391188.1\|1016056_1019356_+	DNA polymerase III subunit alpha	A0A0K1Y9G6	Streptomyces_phage	1.7e-142	32.1
1019420:1019437	attL	NA	NA	NA	NA
WP_012391189.1\|1019493_1020915_+	pyruvate kinase	NA	NA	NA	NA
WP_003683209.1\|1021070_1021958_+	S1 RNA-binding protein	NA	NA	NA	NA
WP_012391190.1\|1021950_1022829_+\|integrase	tyrosine-type recombinase/integrase	A0A142K830	Mycobacterium_phage	8.9e-11	27.5
WP_003684947.1\|1022809_1023193_+	hypothetical protein	NA	NA	NA	NA
WP_012391191.1\|1023185_1023974_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	7.2e-12	27.5
WP_003683201.1\|1023951_1024539_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.5e-14	30.7
WP_003684943.1\|1024539_1025265_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_003683198.1\|1025536_1026115_+	ECF transporter S component	NA	NA	NA	NA
WP_031274574.1\|1026314_1027379_+	hypothetical protein	NA	NA	NA	NA
WP_003683188.1\|1027368_1028826_+	ATP-dependent DNA helicase RecQ	F2NZ48	Diadromus_pulchellus_ascovirus	6.8e-56	38.7
WP_041807769.1\|1028886_1029441_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_003684936.1\|1029464_1030145_+	(d)CMP kinase	NA	NA	NA	NA
WP_003683184.1\|1030221_1031454_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_012391194.1\|1031531_1032845_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_003683180.1\|1033068_1033344_+	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	3.4e-25	68.5
WP_012391195.1\|1033422_1034685_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003683175.1\|1034798_1035656_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012391197.1\|1035821_1037024_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	5.8e-45	48.6
WP_003683172.1\|1037036_1038923_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.2e-51	29.0
WP_003683168.1\|1038988_1039948_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	9.1e-118	63.4
WP_003683166.1\|1039959_1040463_+	dihydrofolate reductase	A0A223LJP4	Erwinia_phage	5.6e-18	37.8
WP_003684928.1\|1040442_1041072_-	hemolysin III family protein	NA	NA	NA	NA
WP_012391198.1\|1041238_1042081_+	DegV family protein	NA	NA	NA	NA
WP_012391199.1\|1042214_1043393_-	3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	6.7e-62	36.8
WP_012391200.1\|1043462_1044089_+	chloramphenicol acetyltransferase	NA	NA	NA	NA
WP_003683158.1\|1044219_1045137_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_003683157.1\|1045140_1045734_+	YpmS family protein	NA	NA	NA	NA
WP_003683156.1\|1045743_1045968_+	YozE family protein	NA	NA	NA	NA
WP_003684924.1\|1045978_1046851_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_012391201.1\|1046843_1047614_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.1e-20	35.2
WP_012391202.1\|1047666_1048542_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_012391203.1\|1048624_1050757_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.5e-96	36.2
WP_012391204.1\|1050831_1051728_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1053329:1053346	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1329903 : 1352496

Paenibacillus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012391385.1\|1329903_1331124_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.5e-93	46.2
WP_012391386.1\|1331312_1331729_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	1.0e-25	46.8
WP_012391387.1\|1331740_1332778_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_012391388.1\|1332828_1333146_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	4.0e-22	51.1
WP_012391389.1\|1333635_1334775_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	8.2e-41	32.5
WP_015639167.1\|1334875_1335220_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014562501.1\|1335426_1336338_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003617037.1\|1336455_1337091_+	carbonic anhydrase family protein	NA	NA	NA	NA
WP_012391391.1\|1337283_1339788_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_012391392.1\|1339789_1340872_-	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_050724115.1\|1340901_1341777_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_003683312.1\|1341817_1342255_-	signal peptidase II	NA	NA	NA	NA
WP_012391394.1\|1342254_1342689_-	hypothetical protein	NA	NA	NA	NA
WP_003683308.1\|1342701_1343103_+	ribonuclease HI family protein	NA	NA	NA	NA
WP_004563210.1\|1343258_1343861_-	nitroreductase family protein	NA	NA	NA	NA
WP_012391395.1\|1344084_1344948_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012391396.1\|1345161_1345851_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_080503633.1\|1345937_1346636_-	glycosyltransferase	NA	NA	NA	NA
WP_003688751.1\|1346757_1347045_+\|transposase	transposase	NA	NA	NA	NA
WP_012391397.1\|1347115_1348336_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.8e-95	46.2
WP_012391398.1\|1348407_1349286_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-40	35.3
WP_012391399.1\|1349271_1350165_-	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA
WP_080503634.1\|1351587_1352496_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.4e-11	29.6

DBSCAN-SWA_8

1369159 : 1410267

Paenibacillus_phage(27.27%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012391409.1\|1369159_1370455_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	9.6e-54	29.2
WP_004563226.1\|1370481_1371000_-	DUF5590 domain-containing protein	NA	NA	NA	NA
WP_041807809.1\|1371050_1373891_-	3'-5' exoribonuclease	A0A1X9I5C8	Streptococcus_phage	4.7e-61	34.6
WP_012391411.1\|1374120_1375056_+	mevalonate kinase	NA	NA	NA	NA
WP_012391412.1\|1375057_1376047_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
WP_003683263.1\|1376066_1377176_+	phosphomevalonate kinase	NA	NA	NA	NA
WP_003683262.1\|1377231_1378317_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_012391413.1\|1378473_1379607_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	3.7e-09	28.9
WP_012391414.1\|1379816_1381004_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	9.8e-37	28.8
WP_041807987.1\|1381104_1381545_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	3.9e-31	49.3
WP_012391416.1\|1381595_1382969_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_012391417.1\|1383097_1383904_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_012391418.1\|1384135_1385053_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_012391419.1\|1385065_1388245_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_003683908.1\|1388244_1389327_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.5e-55	35.6
WP_004563240.1\|1389328_1390618_-	dihydroorotase	NA	NA	NA	NA
WP_012391420.1\|1390617_1391583_-	aspartate carbamoyltransferase catalytic subunit	A0A1J0F9B8	Only_Syngen_Nebraska_virus	5.9e-24	29.9
WP_041807812.1\|1392267_1392555_+\|transposase	transposase	NA	NA	NA	NA
WP_012391422.1\|1392578_1393457_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.7e-42	36.4
WP_012391423.1\|1393891_1394182_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_012391424.1\|1394191_1395223_-	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_012391425.1\|1395219_1395876_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_012391426.1\|1395879_1396758_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_012391427.1\|1396779_1398681_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_012391428.1\|1398677_1399418_-	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_012391429.1\|1399483_1400704_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.1e-95	46.5
WP_012391430.1\|1400769_1403208_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_012391431.1\|1403440_1404319_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.7e-41	36.1
WP_003688751.1\|1404342_1404630_-\|transposase	transposase	NA	NA	NA	NA
WP_031265403.1\|1404790_1405366_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	4.9e-18	33.2
WP_012391432.1\|1406211_1407498_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003683897.1\|1407590_1407950_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_012391433.1\|1408070_1409498_-	amino acid permease	NA	NA	NA	NA
WP_003683893.1\|1409508_1410267_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_9

1571766 : 1678536

Streptococcus_phage(14.29%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012391520.1\|1571766_1574013_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.7e-122	39.1
WP_012391521.1\|1574265_1574973_+	NUDIX hydrolase	NA	NA	NA	NA
WP_012391522.1\|1575099_1575675_+	cysteine hydrolase	NA	NA	NA	NA
WP_012391523.1\|1575667_1577095_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.3e-96	44.7
WP_003684189.1\|1577259_1577853_-	ECF transporter S component	NA	NA	NA	NA
WP_003684188.1\|1578008_1578728_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_003684186.1\|1578738_1579527_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	7.5e-25	34.5
WP_004563054.1\|1579516_1580401_+	DMT family transporter	NA	NA	NA	NA
WP_024501089.1\|1580479_1581724_+	carboxylate--amine ligase	NA	NA	NA	NA
WP_012391525.1\|1582032_1582176_-	hypothetical protein	NA	NA	NA	NA
WP_012391526.1\|1582366_1583065_-	hypothetical protein	NA	NA	NA	NA
WP_012391527.1\|1583077_1583938_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.8e-17	28.0
WP_003684176.1\|1583924_1584302_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012391528.1\|1584411_1585344_-	dTDP-glucose 4,6-dehydratase	M1H4P8	Acanthocystis_turfacea_Chlorella_virus	1.3e-57	40.2
WP_012391529.1\|1585437_1586391_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012391530.1\|1586601_1588278_-	hypothetical protein	NA	NA	NA	NA
WP_012391531.1\|1588335_1589916_-	peptide chain release factor 3	A0A1B0RXH7	Streptococcus_phage	1.5e-32	27.3
WP_012391532.1\|1590016_1590964_-	glycosyltransferase	NA	NA	NA	NA
WP_012391533.1\|1590973_1592752_-	hypothetical protein	NA	NA	NA	NA
WP_041807832.1\|1592822_1593797_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.4e-49	35.9
WP_012391535.1\|1593974_1595084_-	AI-2E family transporter	NA	NA	NA	NA
WP_012391536.1\|1595083_1596016_-	glycosyltransferase family 2 protein	V5USA4	Oenococcus_phage	1.1e-72	46.9
WP_080503638.1\|1596104_1596668_-	hypothetical protein	NA	NA	NA	NA
WP_012391537.1\|1596810_1598223_-	C40 family peptidase	A0A1J0GW44	Streptomyces_phage	3.2e-10	43.0
WP_080503639.1\|1598456_1600160_-	glucosaminidase domain-containing protein	A0A0A7RUS8	Clostridium_phage	7.2e-25	42.9
WP_041807836.1\|1600846_1601134_+\|transposase	transposase	NA	NA	NA	NA
WP_012391539.1\|1601157_1601994_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-38	36.0
WP_080503640.1\|1602018_1602381_-	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA
WP_012391540.1\|1602479_1603571_-	acyltransferase	NA	NA	NA	NA
WP_012391541.1\|1603593_1604598_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012391542.1\|1604606_1606037_-	flippase	NA	NA	NA	NA
WP_012391543.1\|1606039_1607161_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.3e-171	77.8
WP_012391544.1\|1607299_1608361_+	glycosyltransferase	NA	NA	NA	NA
WP_012391545.1\|1609565_1610582_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	2.4e-36	34.4
WP_130125386.1\|1611003_1611549_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.5e-29	42.5
WP_158297482.1\|1611612_1611891_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012391546.1\|1612345_1613566_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	8.1e-95	46.2
WP_012391547.1\|1613642_1614521_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.6e-42	36.4
WP_003688751.1\|1614544_1614832_-\|transposase	transposase	NA	NA	NA	NA
WP_041807838.1\|1615231_1615873_-	hypothetical protein	NA	NA	NA	NA
WP_144039610.1\|1616898_1618008_-	hypothetical protein	NA	NA	NA	NA
WP_012391550.1\|1618132_1618894_-	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_012391551.1\|1618905_1619580_-	sugar transferase	NA	NA	NA	NA
WP_012391552.1\|1619728_1620547_-	recombination regulator RecX	NA	NA	NA	NA
WP_003684128.1\|1620640_1620847_+	hypothetical protein	NA	NA	NA	NA
WP_003684127.1\|1620882_1621098_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_015639332.1\|1621278_1622175_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_012391554.1\|1622303_1625243_-	LTA synthase family protein	NA	NA	NA	NA
WP_012391555.1\|1625399_1626257_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_012391556.1\|1626369_1626816_+	flavodoxin	NA	NA	NA	NA
WP_012391557.1\|1626825_1627260_+	GtrA family protein	NA	NA	NA	NA
WP_014562594.1\|1627915_1629235_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.7e-34	29.1
WP_003684114.1\|1629247_1630258_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_003684113.1\|1630422_1630788_+	DUF4828 domain-containing protein	NA	NA	NA	NA
WP_003684112.1\|1630929_1631499_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_012391558.1\|1631499_1632402_-	L-2-hydroxyisocaproate dehydrogenase	NA	NA	NA	NA
WP_041807842.1\|1632569_1634075_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_012391560.1\|1634189_1634969_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003684108.1\|1635111_1635465_+	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA
WP_024271931.1\|1636007_1637633_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.3e-44	25.3
WP_004563019.1\|1637803_1638271_-	DNA starvation/stationary phase protection protein	A0A291I9P0	Lactobacillus_phage	9.2e-15	31.5
WP_004563015.1\|1638351_1638915_-	hypothetical protein	NA	NA	NA	NA
WP_003684096.1\|1639384_1640644_-	LCP family protein	NA	NA	NA	NA
WP_003684094.1\|1640866_1641415_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_021349820.1\|1641621_1642032_+	MFS transporter	NA	NA	NA	NA
WP_141344360.1\|1641985_1642786_+	MFS transporter	NA	NA	NA	NA
WP_012391562.1\|1642817_1643336_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.5e-31	46.2
WP_012391563.1\|1643426_1644020_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012391564.1\|1644037_1644259_+	hypothetical protein	NA	NA	NA	NA
WP_012391565.1\|1644296_1644986_-	class I SAM-dependent methyltransferase	A0A097BYE1	Leuconostoc_phage	3.4e-34	41.6
WP_012391566.1\|1645148_1645721_-	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_075667505.1\|1645723_1646167_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_041807847.1\|1646308_1647847_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_012391568.1\|1647910_1648417_-\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_080503641.1\|1651446_1652568_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_144039604.1\|1653753_1654659_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012391429.1\|1655364_1656585_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.1e-95	46.5
WP_003684065.1\|1659074_1660445_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-10	25.2
WP_012390892.1\|1660511_1661732_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.3e-94	46.0
WP_003688751.1\|1662526_1662814_+\|transposase	transposase	NA	NA	NA	NA
WP_012391547.1\|1662837_1663716_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.6e-42	36.4
WP_012391574.1\|1664468_1665119_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003681670.1\|1665143_1665425_-	hypothetical protein	NA	NA	NA	NA
WP_003681668.1\|1665476_1665704_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_031265456.1\|1667813_1668374_-	hypothetical protein	NA	NA	NA	NA
WP_012391575.1\|1668615_1669755_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	6.7e-43	33.3
WP_021816442.1\|1669844_1670348_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012391056.1\|1671471_1672659_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.4e-37	29.1
WP_012391576.1\|1672802_1674179_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	8.8e-130	52.0
WP_012391577.1\|1674293_1675301_-	diacylglycerol kinase	NA	NA	NA	NA
WP_012391578.1\|1675313_1676738_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_012391579.1\|1676752_1678216_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_012391580.1\|1678215_1678536_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA

DBSCAN-SWA_10

1722729 : 1832376

unidentified_phage(12.5%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012391601.1\|1722729_1725234_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	6.9e-125	39.6
WP_003681550.1\|1725252_1725723_-	CtsR family transcriptional regulator	NA	NA	NA	NA
WP_012391602.1\|1725862_1726882_-	alcohol dehydrogenase AdhP	A0A2K9L7I1	Tupanvirus	8.4e-29	29.9
WP_012390709.1\|1727119_1728136_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	2.4e-36	34.4
WP_012391603.1\|1728356_1729073_+	hypothetical protein	NA	NA	NA	NA
WP_041807858.1\|1729134_1729800_-	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_080503642.1\|1729832_1730273_-	hypothetical protein	NA	NA	NA	NA
WP_021816468.1\|1730202_1730562_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_004562945.1\|1731907_1732738_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_041807860.1\|1733053_1733389_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_015639408.1\|1733401_1733572_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_003681522.1\|1734311_1734953_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	5.4e-58	52.5
WP_024501145.1\|1735083_1736577_-	amino acid permease	NA	NA	NA	NA
WP_012391607.1\|1736883_1737351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012391608.1\|1737395_1738205_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012391609.1\|1738423_1739092_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_041807862.1\|1739146_1739635_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_012391611.1\|1739644_1740394_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_004562929.1\|1740565_1740766_-	cold-shock protein	Q9AZD3	Lactococcus_phage	6.9e-20	66.7
WP_012391612.1\|1740914_1741574_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
WP_012391613.1\|1741726_1742632_+	cation transporter	A0A1V0SED0	Indivirus	1.3e-09	32.0
WP_012391614.1\|1742786_1743482_-	VIT family protein	NA	NA	NA	NA
WP_012391615.1\|1743499_1744183_-	VIT family protein	NA	NA	NA	NA
WP_003681496.1\|1744331_1744808_-	universal stress protein	NA	NA	NA	NA
WP_031274409.1\|1745484_1746699_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_004562921.1\|1746869_1748702_-	ribonuclease J	A0A0C5AJ83	Bacteriophage	6.9e-05	33.3
WP_041807864.1\|1748973_1749315_-	hypothetical protein	NA	NA	NA	NA
WP_004562919.1\|1749409_1749847_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003681482.1\|1750015_1751479_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_012391618.1\|1751482_1752187_+	DUF4811 domain-containing protein	NA	NA	NA	NA
WP_012391619.1\|1752277_1753702_-	L-arabinose isomerase	NA	NA	NA	NA
WP_012391620.1\|1753833_1755201_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_012391621.1\|1755417_1756503_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012391622.1\|1756661_1757390_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_012391623.1\|1757400_1759005_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_012391624.1\|1759235_1760120_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	3.1e-11	31.7
WP_012391625.1\|1760393_1762982_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_004562913.1\|1763256_1763841_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_003681472.1\|1763856_1764855_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_012391626.1\|1765090_1765753_-	uracil-DNA glycosylase	NA	NA	NA	NA
WP_004562910.1\|1765770_1767108_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_012391627.1\|1767182_1768076_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012391629.1\|1771137_1772106_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_144039605.1\|1772692_1773598_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012391631.1\|1773534_1774149_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	9.6e-28	38.0
WP_012391632.1\|1775152_1776031_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.7e-42	36.4
WP_031265479.1\|1776054_1776342_-\|transposase	transposase	NA	NA	NA	NA
WP_012390709.1\|1777468_1778485_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	2.4e-36	34.4
WP_004562901.1\|1778873_1779587_-	EcsC family protein	NA	NA	NA	NA
WP_031265482.1\|1781063_1781435_+	hypothetical protein	NA	NA	NA	NA
WP_012391634.1\|1781491_1782430_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	4.1e-22	37.1
WP_050724118.1\|1782707_1783385_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.1e-19	30.2
WP_012391635.1\|1783415_1784108_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144039611.1\|1785044_1785947_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.5e-08	28.6
WP_003681444.1\|1786087_1786675_-	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	2.8e-24	41.6
WP_012391637.1\|1786895_1788854_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA
WP_080503661.1\|1789002_1790013_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_012391639.1\|1790586_1792059_+	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	4.8e-17	23.6
WP_041807875.1\|1792071_1793448_+	DUF2252 domain-containing protein	NA	NA	NA	NA
WP_012391641.1\|1793727_1794636_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003681437.1\|1794672_1795542_-	hypothetical protein	NA	NA	NA	NA
WP_012391643.1\|1795612_1796218_+	hypothetical protein	NA	NA	NA	NA
WP_004562891.1\|1796464_1797961_-	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_012391644.1\|1798378_1799299_+	serine hydrolase	NA	NA	NA	NA
WP_012391645.1\|1799643_1800897_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_012391646.1\|1801037_1801586_-	hypothetical protein	NA	NA	NA	NA
WP_012391647.1\|1801765_1802797_+	lactonase family protein	NA	NA	NA	NA
WP_012391648.1\|1802889_1803477_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_003681416.1\|1803473_1803785_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_012391649.1\|1803793_1806790_-	DEAD/DEAH box helicase	Q6VT37	Vibrio_phage	6.3e-16	27.3
WP_003681411.1\|1806802_1807219_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_004562883.1\|1807271_1807817_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012391650.1\|1807957_1809406_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_012391651.1\|1809407_1810166_+	DUF4811 domain-containing protein	NA	NA	NA	NA
WP_003681399.1\|1810691_1811420_+	WYL domain-containing protein	NA	NA	NA	NA
WP_003681397.1\|1811522_1811756_+	cytochrome b5	NA	NA	NA	NA
WP_003681394.1\|1812146_1812623_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_004562877.1\|1812683_1813799_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	3.6e-73	40.9
WP_012391652.1\|1814177_1815188_-	aspartate--ammonia ligase	NA	NA	NA	NA
WP_012391653.1\|1815381_1815978_+	glycoside hydrolase family 73 protein	A0A0A7RUS8	Clostridium_phage	5.3e-23	43.4
WP_012391654.1\|1815996_1816518_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012391655.1\|1816814_1818335_+	LytTR family transcriptional regulator	O64031	Bacillus_phage	1.1e-32	25.5
WP_012391656.1\|1818331_1818790_+	hypothetical protein	NA	NA	NA	NA
WP_004562871.1\|1819274_1819697_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003681371.1\|1819973_1820708_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
WP_012391657.1\|1820708_1821725_+	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_012391658.1\|1821727_1822141_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_012391659.1\|1822112_1823501_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_012391660.1\|1823487_1824237_+	5-oxoprolinase subunit PxpA	NA	NA	NA	NA
WP_012391661.1\|1824249_1825461_+	divalent metal cation transporter	NA	NA	NA	NA
WP_003681364.1\|1825672_1826842_-	MFS transporter	NA	NA	NA	NA
WP_012391662.1\|1827421_1828753_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.3e-23	24.2
WP_003681362.1\|1828906_1829221_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.4e-14	39.6
WP_003681359.1\|1829368_1830295_+	AEC family transporter	NA	NA	NA	NA
WP_041807880.1\|1830235_1830484_-	hypothetical protein	NA	NA	NA	NA
WP_012391663.1\|1830778_1831942_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	9.9e-159	71.4
WP_080503646.1\|1831938_1832376_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	1.4e-49	71.7

DBSCAN-SWA_11

1957056 : 2082374

114

Paenibacillus_phage(22.58%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012390893.1\|1957056_1957944_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.6e-34	42.3
WP_003681165.1\|1958005_1958686_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_050724109.1\|1960101_1960761_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	4.6e-20	30.0
WP_012391739.1\|1960770_1962057_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_144039606.1\|1962215_1963124_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.4e-11	30.2
WP_014562701.1\|1963423_1964434_-	nickel transporter NixA	NA	NA	NA	NA
WP_012391742.1\|1964462_1965290_-	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA
WP_012391743.1\|1965314_1966025_-	aquaporin family protein	NA	NA	NA	NA
WP_012391744.1\|1966026_1967391_-	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA
WP_012391745.1\|1967390_1968149_-	nickel pincer cofactor biosynthesis protein LarB	A0A288TYA6	Enterococcus_phage	3.7e-21	47.2
WP_012391746.1\|1968156_1969440_-	nickel-dependent lactate racemase	NA	NA	NA	NA
WP_012391747.1\|1969680_1970352_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_041807908.1\|1970867_1971068_-	hypothetical protein	NA	NA	NA	NA
WP_012391748.1\|1972531_1974253_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_012391749.1\|1974440_1975769_-	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_012391750.1\|1975783_1976179_-	D-ribose pyranase	NA	NA	NA	NA
WP_003681133.1\|1976202_1977120_-	ribokinase	NA	NA	NA	NA
WP_021816602.1\|1977364_1978324_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_012391752.1\|1978427_1979081_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_012391753.1\|1979094_1980111_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003685479.1\|1980144_1981092_+	ribokinase	NA	NA	NA	NA
WP_012391754.1\|1981151_1982576_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_003685483.1\|1982773_1983778_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012391755.1\|1984331_1985837_-	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_012391756.1\|1986413_1986848_-	hypothetical protein	NA	NA	NA	NA
WP_012391757.1\|1987127_1989527_-	phosphoketolase family protein	NA	NA	NA	NA
WP_012391758.1\|1989732_1990530_-	HAD family hydrolase	NA	NA	NA	NA
WP_012391759.1\|1990536_1991265_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003681115.1\|1991408_1991909_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_003681114.1\|1991912_1992656_+	hypothetical protein	NA	NA	NA	NA
WP_012391760.1\|1992715_1994152_+	C69 family dipeptidase	NA	NA	NA	NA
WP_012391761.1\|1994630_1995443_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_012391762.1\|1995702_1996218_-	DUF1836 domain-containing protein	NA	NA	NA	NA
WP_041807912.1\|1996227_1996755_-	hypothetical protein	NA	NA	NA	NA
WP_012391764.1\|1996903_1998289_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_003681105.1\|1998375_1998840_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_012391765.1\|1999084_1999516_-	VOC family protein	NA	NA	NA	NA
WP_012391766.1\|1999708_2000878_+	MFS transporter	NA	NA	NA	NA
WP_003685507.1\|2001317_2002799_+	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	4.0e-72	36.9
WP_012391767.1\|2002982_2004422_+	NADP-dependent phosphogluconate dehydrogenase	E3SPS4	Prochlorococcus_phage	1.1e-29	30.2
WP_003685511.1\|2004676_2005150_-	universal stress protein	NA	NA	NA	NA
WP_003685513.1\|2005311_2005767_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_012391768.1\|2005924_2006692_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	7.3e-17	31.5
WP_012391769.1\|2006708_2007710_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012391770.1\|2007981_2009790_-	oligoendopeptidase F	NA	NA	NA	NA
WP_003681091.1\|2009792_2011085_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_003681090.1\|2011332_2012004_+	membrane protein	NA	NA	NA	NA
WP_144039607.1\|2012408_2013477_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.8e-35	33.6
WP_012391063.1\|2015159_2016347_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.4e-37	29.1
WP_004562986.1\|2017286_2017946_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	8.1e-41	43.3
WP_012391773.1\|2018423_2018852_-	hypothetical protein	NA	NA	NA	NA
WP_004562984.1\|2018832_2019189_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_080503649.1\|2019190_2019907_-	sel1 repeat family protein	NA	NA	NA	NA
WP_187323318.1\|2019966_2020440_-	hypothetical protein	NA	NA	NA	NA
WP_012391775.1\|2020985_2021822_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_021816632.1\|2021868_2022477_-	Tat pathway signal sequence	NA	NA	NA	NA
WP_012391776.1\|2022492_2024715_-	alpha-galactosidase	NA	NA	NA	NA
WP_012391063.1\|2024979_2026167_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.4e-37	29.1
WP_144039608.1\|2026177_2026993_-	hypothetical protein	Q6NE04	Leptospira_phage	4.2e-47	39.3
WP_012391778.1\|2027148_2028369_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-94	45.7
WP_021816635.1\|2029920_2030202_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_041807917.1\|2030198_2030555_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_012391779.1\|2030676_2031600_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	3.3e-32	32.1
WP_021816638.1\|2032495_2032972_-	hypothetical protein	NA	NA	NA	NA
WP_014562727.1\|2032968_2033832_-	hypothetical protein	NA	NA	NA	NA
WP_049775704.1\|2033924_2034260_-	hypothetical protein	NA	NA	NA	NA
WP_012391778.1\|2034380_2035601_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-94	45.7
WP_012391781.1\|2036777_2037449_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-30	36.4
WP_003685525.1\|2037453_2038500_-	ABC transporter permease	NA	NA	NA	NA
WP_012391056.1\|2038614_2039802_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.4e-37	29.1
WP_080503650.1\|2040576_2041275_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	2.4e-19	30.4
WP_080503651.1\|2041211_2042120_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-10	29.1
WP_031265257.1\|2042249_2042852_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_031265525.1\|2042851_2043727_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012391784.1\|2043874_2044876_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	9.9e-06	22.8
WP_012391785.1\|2044903_2046358_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_012391786.1\|2046385_2047552_-	galactokinase	NA	NA	NA	NA
WP_012391787.1\|2047723_2048674_+	hypothetical protein	NA	NA	NA	NA
WP_041808029.1\|2048679_2049468_+	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_003682203.1\|2049486_2049999_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_003682205.1\|2050011_2050236_+	hypothetical protein	NA	NA	NA	NA
WP_003682207.1\|2050351_2051086_-	amino acid ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	1.1e-14	28.1
WP_003682208.1\|2051087_2051777_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003685553.1\|2051879_2052680_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_003682214.1\|2052818_2053145_-	hypothetical protein	NA	NA	NA	NA
WP_012391789.1\|2053246_2054185_+	phosphoglycerate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	5.4e-30	33.2
WP_012391790.1\|2054186_2054669_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_003682221.1\|2054885_2055680_+	nicotinamide mononucleotide transporter	A0A0C5K6M3	Enterococcus_phage	5.8e-25	33.1
WP_003685559.1\|2055786_2056296_-	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	1.9e-37	50.0
WP_012391792.1\|2056304_2058209_-	peptidase M13	E3T4I7	Cafeteria_roenbergensis_virus	6.8e-72	30.0
WP_171030006.1\|2058468_2059770_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.0e-47	33.7
WP_012391793.1\|2059875_2060169_-	hypothetical protein	NA	NA	NA	NA
WP_012391794.1\|2060161_2061319_-	hypothetical protein	NA	NA	NA	NA
WP_012391795.1\|2061315_2062458_-	AAA family ATPase	A0A141HRX4	Bacillus_phage	1.7e-22	31.1
WP_012391796.1\|2062459_2063089_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_003682235.1\|2063148_2063517_+	DUF488 family protein	NA	NA	NA	NA
WP_012391797.1\|2063807_2063993_-	hypothetical protein	NA	NA	NA	NA
WP_003685576.1\|2063993_2064668_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003682246.1\|2064670_2064994_-	hypothetical protein	NA	NA	NA	NA
WP_012391798.1\|2065087_2065714_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_003682249.1\|2065894_2066452_-	elongation factor P	NA	NA	NA	NA
WP_012391799.1\|2066598_2067231_-	hypothetical protein	NA	NA	NA	NA
WP_003682253.1\|2067367_2067601_+	hypothetical protein	NA	NA	NA	NA
WP_041807921.1\|2069025_2071098_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7RUS8	Clostridium_phage	7.2e-27	48.3
WP_003682256.1\|2071216_2071537_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012391802.1\|2071781_2073068_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003685587.1\|2073198_2073657_-	arginine repressor	NA	NA	NA	NA
WP_012391803.1\|2073817_2074510_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-33	37.2
WP_041807924.1\|2074522_2075584_-	ABC transporter permease	NA	NA	NA	NA
WP_003685592.1\|2075507_2076110_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003685594.1\|2076266_2077277_-	zinc-dependent alcohol dehydrogenase family protein	A0A2K9L7I1	Tupanvirus	6.2e-08	27.7
WP_003682262.1\|2077554_2079135_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_141344352.1\|2079518_2080253_+	hypothetical protein	NA	NA	NA	NA
WP_015639633.1\|2080568_2082374_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	6.4e-88	33.8

Anti-CRISPR protein detection

Acr_ID: NC_010610.1|WP_012391643.1|1795612_1796218_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_010610.1|WP_012391643.1|1795612_1796218_+|hypothetical-protein

1795612_1796218_+

201 aa aa

1722729-1832376

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_010610_4	Orphan	4.1\|880275\|31\|NC_010610\|CRISPRCasFinder	880275-880305	31	1776423-1776393	0

1. spacer 4.1|880275|31|NC_010610|CRISPRCasFinder matches to NC_010610 position: 1776423-1776393, mismatch: 0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010610

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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