CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	0 crisprs	NA	0	0	1	0
NC_009342	Corynebacterium glutamicum R, complete genome	5 crisprs	csa3,cas3,DEDDh,cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5,WYL,PrimPol,DinG	8	70	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009342_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009342_1

306173-306362

Orphan

Consensus_repeat	Method
GGCGGGGAGTCCGCCTTGCTTGGTACACCAGCGAACGAAAGTGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009342_1

>merge|NC_009342|1|306173-306362|CRISPRCasFinder
GGCTGGGAGTCTGCCTCGTTTGGTGCGGCGGCGGGCGAAAGTGGGCAGGCTTGTTGCTGGGATCGTCGCTTCGAGTGGCTAACTTGCCCTGTTTGAACCGCCCGATCACAACAGGGCGGGCTTGGTGCCGGGAAGGTCTGTTTTGGCGGGGAGTCCGCCTTGCTTGGTACACCAGCGAACGAAAGTGGGC

>NC_009342|1|1|306173-306362|CRISPRCasFinder
GGCTGGGAGTCTGCCTCGTTTGGTGCGGCGGCGGGCGAAAGTGGGC	AGGCTTGTTGCTGGGATCGTCGCTTCGAGTGGCTAACTTGCCCTGTTTGAACCGCCCGATCACAACAGGGCGGGCTTGGTGCCGGGAAGGTCTGTTTT
GGCGGGGAGTCCGCCTTGCTTGGTACACCAGCGAACGAAAGTGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009342.1\|WP_003857656.1\|303484_303889_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_044027408.1\|304522_305455_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NC_009342.1\|WP_003857630.1\|314749_315823_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|235526
NC_009342.1\|WP_003857646.1\|307450_308347_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NC_009342.1\|WP_080506395.1\|313864_314758_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379128
NC_009342.1\|WP_011896544.1\|315819_316278_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NC_009342.1\|WP_011896539.1\|309661_310618_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176180
NC_009342.1\|WP_011896537.1\|305476_306076_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NC_009342.1\|WP_003857667.1\|300895_301123_-\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_011896534.1\|301646_302102_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_003857654.1\|303890_304526_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NC_009342.1\|WP_011896538.1\|308489_309665_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NC_009342.1\|WP_003857637.1\|311439_311721_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|223706
NC_009342.1\|WP_044026846.1\|301170_301650_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_011896532.1\|299352_300819_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_009342.1\|WP_003857649.1\|306648_307440_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NC_009342.1\|WP_003857636.1\|311717_313205_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_009342.1\|WP_044026851.1\|310638_311166_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378933
NC_009342.1\|WP_172767997.1\|303075_303474_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|225155
NC_009342.1\|WP_044026848.1\|302127_303024_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377943

Protein	Function_ID	Function_description	E-value
NC_009342.1\|WP_044027408.1\|304522_305455_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	2.60568e-61
NC_009342.1\|WP_003857630.1\|314749_315823_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|235526	PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated.	0
NC_009342.1\|WP_003857646.1\|307450_308347_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	4.12428e-71
NC_009342.1\|WP_011896544.1\|315819_316278_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.96726e-44
NC_009342.1\|WP_044026851.1\|310638_311166_-\|hypothetical-protein	gnl\|CDD\|378933	pfam12725, DUF3810, Protein of unknown function (DUF3810). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 333 and 377 amino acids in length. There is a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterized family of peptidase enzymes.	0.00676608
NC_009342.1\|WP_011896537.1\|305476_306076_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.25323e-34
NC_009342.1\|WP_003857654.1\|303890_304526_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	4.66058e-72
NC_009342.1\|WP_011896538.1\|308489_309665_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	6.4127e-65
NC_009342.1\|WP_003857637.1\|311439_311721_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|223706	COG0633, Fdx, Ferredoxin [Energy production and conversion].	7.41524e-16
NC_009342.1\|WP_080506395.1\|313864_314758_+\|hypothetical-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.000932729
NC_009342.1\|WP_011896532.1\|299352_300819_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.78414e-60
NC_009342.1\|WP_003857649.1\|306648_307440_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	5.01902e-120
NC_009342.1\|WP_003857636.1\|311717_313205_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NC_009342.1\|WP_011896539.1\|309661_310618_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	4.01031e-160
NC_009342.1\|WP_172767997.1\|303075_303474_+\|GtrA-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	1.19298e-24
NC_009342.1\|WP_044026848.1\|302127_303024_+\|hypothetical-protein	gnl\|CDD\|377943	pfam07929, PRiA4_ORF3, Plasmid pRiA4b ORF-3-like protein. Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumorigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.	0.000699774

>NC_009342.1|WP_011896537.1|305476_306076_-|VOC-family-protein
MGTQIDHIVIAAPNLEDLVSRFEKLTGVKAVAGGRHDTGTANALVPLKEPKGSYLELIGPDPEADAVTQDNFAIATTQSTEPRVAAWCVRPDDLEALAAKRGTQSQLMSRHTPEGRTLTWRLILPEPGVDFAPVPFAIDWLGSPHPSKVTEPQVSVHSFTVHGHSEPDELPEPAVFQEGKPLLELVLESPKGRVNLSDL
>NC_009342.1|WP_044027408.1|304522_305455_-|glycosyltransferase-family-2-protein
MAKTGTHLQHGIDVAAVIVTHNRVELLRHSLEVVANQTYPVKHIVVVDNGADPDVEKLVLEVAGDRAVYTPSRTNLGGGGGFAFGFLTALALGADAVWCADDDGRPEGPEVLKTLIDAASRHNLEEVSPVVCNADDPERLAFPLRRGLEWRRMRSELIDPANPEDDLLPGIASLFNGALISAYAMEHIGVPDYRLFIRGDEVEYHRRLVRSGLPFGTCLTTAYLHPDGSDEFKPILGGRMHTQYPDNDFKRFFTYRNRGYLMSQPGMRKLLPQEYARFAWFFLVQKRDVKGFREWLRLHKLGRDEKFNRP
>NC_009342.1|WP_003857654.1|303890_304526_+|MOSC-domain-containing-protein
MPGLVLSTNVAHIQQDPGGDDRISGINKLPVATGIDVFIPGPNYGDGSGVVGDAIGDSLHHGGAHKAIYAYSREELDFFDPTYRNGYFGENLTTSGIVLEDLLINQQVRIGTTLLEVSIPRRPCRTFAHWLDIKGWLKTFTQRGLPGSYFRVIEEGHINPGDPIEVLQAPDHDITMSMAFRAKMGNKDLARRVVAANCLPARYHEELLKLI
>NC_009342.1|WP_003857656.1|303484_303889_+|hypothetical-protein
MKTFNPTMIAGLIGVLYFVLLTLIFSIQDMELAAEIAFGIVTIVGLIAVWDNFRDRNNSTWKTWTGLVGGLLIAVPGICLLVGNLVLLAVDGNPSTMVNTLLSVAGIGAIFLLPIGIIMCLIAGFNRFYAALKV
>NC_009342.1|WP_172767997.1|303075_303474_+|GtrA-family-protein
MSLKTQAFRFILTGGLSAIVDLGLLSLLQLVFGLPVPVARTISFIAGTTTAYMINRRWTFQAESSTSRFLAVVALYGVTFLINIGLQTLCSALFENWGWNEAVAMVCAFVIAQGTGTVINFIVQRTIIFRVK
>NC_009342.1|WP_044026848.1|302127_303024_+|hypothetical-protein
MPTNYARDNVISLASAREQRSGKPEPKPELTLIVRATNVQADGEVHRQIGLNSAMSLDELHNVLNIVFGVGGEQSPWRFEDQFHQPSAPDTNLGELLPEPGDFLFYFWGLWQFNLQCVEMYPRDNGTPRALCIGGSGGLGDDFDQATINAELTGTDTIRDVLSGVRPEVIDLVDRTGVFDFIPLLQALDLKREPLIDATRHHTCRMLPVENSAEASDAFWSCVLALSCLGNDELFIEVIESTMSTLGWVADDGSPLRAPEIISACEASLKILAEIGGYGPEQLAPVDRLDIYRELLCF
>NC_009342.1|WP_011896534.1|301646_302102_+|hypothetical-protein
MTYPVLSVLDNSGDHNIIWHVQTYPAALPTGAWIADEQQLTDLLKDTVVFLTPGSTAPENSPVATIEGVRVGVDKQVAEYNKHGIRLPSLGARTVEAQYRGEPEAEAAWRTALELAEIASGWLEIEAKRRARKALAEAFGAEVQPLPLDTE
>NC_009342.1|WP_044026846.1|301170_301650_+|hypothetical-protein
MRLQVAAGSALIGAGVAVNDYVQSPVRRAISYGALALSGATVIAMGQDPTGERSIIAKDSATMVDQIRQEIGDLGVTPGPESDVDAITERGPLVTWLLLAVFVVAFFTLAYFSIRMDVAVMRRIAKFFEKRGASRPFTCTGMVYAAFIYAICELEARTK
>NC_009342.1|WP_003857667.1|300895_301123_-|hypothetical-protein
MFERFKKAKAPEVHIAAERTNLPLNDFMTRLFAQELPLLDSTSRSEVYRLLREYDGPTISSQEEIPAEIRELMDL
>NC_009342.1|WP_011896532.1|299352_300819_-|FAD-binding-oxidoreductase
MNSSHGTSSSGASAGAHGALPLEAQKLNGWGRTAPTTAEVLSTPDLDIIVDAVRQVAEQNDSKPDYLKRGVIARGMGRSYGDPAQNAGGLVIDMQPLNKIHSIDPDSAIVDVDGGVTLDQLMKAALPYGLWVPVLPGTRQVTIGGAIGPDIHGKNHHSAGSFGDHVVSMELLVADGRILHLEPEGTAEDPQGDLFWATVGGMGLTGIIVRARIRMTKTETAYFIADTDRTNNLEETVAFHSDGSEHNYTYSSAWFDVISPEPKLGRSTISRGSLATLAQLEELAPKLAKDPLKFNAPQLMKVPDIFPSWTLNKLTLSAVGVAYYAMGAPAKNQVKNLTQFYQPLDLIGEWNRGYGSKGFLQYQFVVPTEAVEPFKDIIRDMQKSGHYSALNVFKLFGPGNRAPLSYPMPGWNVCVDFPIRPGLGAFLDDLDKRVMEFGGRLYLAKESRTSAENFHAMYPGMEGWLKTRNEIDPTGVFASDMSRRLELS
>NC_009342.1|WP_003857649.1|306648_307440_-|ABC-transporter-ATP-binding-protein
MVSIDTYNACVDFPIFDAKSRSMKKAFLGAAGGAIGRNQDNVVVVEALRDINLHLREGDRVGLVGHNGAGKSTLLRLLSGIYEPTRGSADIRGRVAPVFDLGVGMDPEISGYENIIIRGLFLGQTRKQMKAKMEEIADFTELGEYLSMPLRTYSTGMRIRLALGVVTSIEPEILLLDEGIGAVDAAFMAKARDRLQALVERSGILVFASHSNDFLAQLCNTALWVDHGQIRDAGLVPDIVESYEGKGAGDHVRRLLTRMEEEK
>NC_009342.1|WP_003857646.1|307450_308347_-|ABC-transporter-permease
MQEQSKQKDLQADIARITAVKSDTVPNSQSMTFGAAWNDIVRGFKQHELWLQLGWQDIKQRYRRSVLGPLWITIATGVMALALGLLYSVLFKIPIAEFLPHVTVGLIIWNFISGCIKEGSDIFIDNEGLIKQLPSALSVHVYRLVWKQALFLAHNLVIWVILMMIFPRPLGWDVLLIIPAMFLLVINGVWVVMFFGIIATRYRDVSPLLEAGTQLLFYVTPIVWMTSTLQSQSAEIGNRARLAELNPLYHYLEIVRAPMIGADLPAYHWWIVLAFTFVGLGLALLAMKQWRFRVSYWV
>NC_009342.1|WP_011896538.1|308489_309665_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MGFDVARVRGLYTSLGDGWTYLNSHQIPQVPERVASGVAAAFRTHAQISEVTSRPIAVDQLEAAREAVASLAGVDPDCVVLGPTRQFLAHTLARGLGGFVRRKAGVVLSRADADWLTAPFRSLDGVFSWAEPDLGTGMLPDWQYEKLVDGSTRLVVLSAAHPLLGTVAPVGKIVDKVRARSRAWVLVDATTYAAYRPLRLDEWEADIVMLDLGELGGPQISALIFRDTSMFPRLDRTVPLELPASSLPHGLLGGVPNLVRHLGNLDENAPSVVEAMGEMAKFHKGLFEHLVESLEGLHAVHIVGISGDAAGQDAAFLDRVPRLTFTVEGVPADMVYRRLVDNRLVTTVSPADPLLDAMGVTEAGGSITIGLSPFSTHYEVDQLTRVLASLA
>NC_009342.1|WP_011896539.1|309661_310618_-|zinc-binding-dehydrogenase
MQAIVQTEEKVTASLELQEVPVPTLKPGEVLVEVKAAGVNRADLLQTQGNYPVPAGASEILGLECAGVIVDAGDTGQTVGQEVACLLTGGGYAEYVAVPEGQLMPIPEGYSFVEAASIVEVACTVWSNIGMLAGLQKEDTFLIHGGAGGIGTFAIQMGKALGVTVAVTAGSTEKLKTCKNLGADILINYKEEDFAEVLKNKADVILDIIGAKYLSQNVKAMAKDAHMVVIGMQGGVKGELNLGHLLAKRGTISATALRGRDEADKARIVSSTVENIWPLLQSKEITPHIDHTLPLAEAAAALQKIQDGTITGKLVLTV
>NC_009342.1|WP_044026851.1|310638_311166_-|hypothetical-protein
MDLLKIAIIAAVMIGVPVLVVFLIVFAVHKLAKEVPQSGRRPGIGLGLLLGFVAGLIVWFVWLSWGGYYENEFGQMQGPYRPWQVVACGVTMVAVTVILGLWTRWTASGPFYSALGGTSGFSFAWAMDALPQDETGLSAFGLVMVIVGVGAGLNVVATLTSIGATIWNNRLPSNA
>NC_009342.1|WP_003857637.1|311439_311721_+|(2Fe-2S)-binding-protein
MALHTHKIDGETYAFSWSPTQTLLDALLQADLPARYSCMEGHCGTCQCTLTGGPSHMLNNEVLSNYEIVSENQVLACQTIRDADGPYHCSFDD
>NC_009342.1|WP_003857636.1|311717_313205_-|sodium:alanine-symporter-family-protein
MELLETFITDVINDNLWMILPFLLVAAGLYFGGRTLLVQIRMIPEMFKAVVEKPAKDGEFADKQDISAFKAFTISAASRVGTANVAGVALAITLGGPGAVFWMWIIALVGGATSFIESTLGQLWKVKDGDSYRGGPAYYMTLGLNARWLAVVFGVAITLTFGFVYNALQSNAVVEAITVSLGTPSTTAKAFVGLGMAGLSALVIFGGVQRIANVTQWMVPFMAGAYIIVGVVVIVINIQQVPTMINDIIAGAFGFRPVATASVWGAFWLAFMNGMRRGLFSNEAGEGSVPNAAATATVSHPVKQGLVQTLGVYFDTLLVCSITAFVILLSGVEYATGDIQSSSLTQSALASVVGGWGTHFITAVMFFLAFSSVLGNYYLAQANIQYFTDSKTVMTVFRLLVLLSVFSGAVASVPLIWALGDTFAGIMVLINLAAIIPLSGVAVKLLKNYTTQKKAGLDPVFHRDMMPEVRNIACWNGKDAATSNYHEAMEVIKKN
>NC_009342.1|WP_080506395.1|313864_314758_+|hypothetical-protein
MWTAKELIGMGYSRRRINSLMKEGKLHRVLRGVYSLDPPSGEVVWSSIRLVRPSALLDGKSAVEVYQGVPLSLPVRVRVSTSNVLRGSRNVVARRSQRTDGIAHRGFRVVSLVDAVATCLDEGSVHPSDLRRLVEERYKSGSGVKQMAHDLKLLRTRRKAQLREFLEECIYGLDSGLEKVMVQELRAAGFRTRQNVVVEGYRWDIQVVGVALIDVDSRKYHQANGRNFIIDRWKSNEAAVQGHVPLRFTDDCVNYATREIIKLVKQVAEFKRKHPRRRVKTQGVGPVFRWHNALVLP
>NC_009342.1|WP_003857630.1|314749_315823_-|ThiF-family-adenylyltransferase
MKNLDIARYRRQIMLGEIGQQKQQSLFDAKVSVIGAGGLGSPALLYLAGAGVGHIHIIDDDLVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPSVKVTVSVRRLDWSNALSELADSDVILDGSDNFDTRHLASWAAAKLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVMGSAMAMEALKIITGVGIPLIGKLGYYSSLDGTWEYIPVVGSPEVLERVLGSAGVSGISGGFGEVLDVPRVSALVDGVSLIDVREPSEFSAYSIPGAHNTPLSAIREGAIPPDVSAGKEVIVYCAAGVRSAQAIAILESAGYTGMSSLDGGIEGWLDSLG
>NC_009342.1|WP_011896544.1|315819_316278_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MNTDPAYVAEQTGKLIDAFLTTDPLEPLLDAAKTDVCTEAMGALVTFEGIVRDHDGGARVTSLTYTAHPTAPQVLSAVADSIVEKHPRTRLWTAHRTGALKIRDAAFLVVAASAHRADAFAACSDLADAVKAQVPIWKEQTRLDGSTDWVGL

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Crispr_ID: NC_009342_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009342_2

416533-416628

Orphan

Consensus_repeat	Method
TGCGTGGGCAGTGTGGTTTGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009342_2

>merge|NC_009342|2|416533-416628|CRISPRCasFinder
TGCGTGGGCAGTGTGGTTTGGTTTTGGGGGCTCGGAACCGGTCACAGATGCCCACGATTGCGGTTTTTCCGTTGCGTGGGCAGTGTGGTTTGGTCT

>NC_009342|2|2|416533-416628|CRISPRCasFinder
TGCGTGGGCAGTGTGGTTTGGTTT	TGGGGGCTCGGAACCGGTCACAGATGCCCACGATTGCGGTTTTTCCGT
TGCGTGGGCAGTGTGGTTTGGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009342.1\|WP_011896612.1\|423045_423621_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_009342.1\|WP_006285704.1\|411029_411857_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293836
NC_009342.1\|WP_003855829.1\|424191_424491_+\|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl\|CDD\|274799
NC_009342.1\|WP_003855805.1\|409223_410420_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173840
NC_009342.1\|WP_011896604.1\|412877_413063_-\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_011896609.1\|420096_421158_+\|CpaE-like-family-protein	unknown	unknown	gnl\|CDD\|274798
NC_009342.1\|WP_003855815.1\|415285_416482_+\|MarP-family-serine-protease	unknown	unknown	gnl\|CDD\|367140
NC_009342.1\|WP_003855806.1\|410441_410915_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NC_009342.1\|WP_011896607.1\|417048_418044_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_009342.1\|WP_003855810.1\|411932_412616_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_009342.1\|WP_011896606.1\|413898_414459_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_009342.1\|WP_011896603.1\|408286_409231_+\|4-hydroxyphenyl-beta-ketoacyl-CoA-hydrolase	unknown	unknown	gnl\|CDD\|225070
NC_009342.1\|WP_003855817.1\|418058_418610_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377816
NC_009342.1\|WP_011896611.1\|422272_423049_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_009342.1\|WP_003855818.1\|418774_419617_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NC_009342.1\|WP_011896605.1\|413108_413891_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_009342.1\|WP_003863285.1\|423848_424169_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_003855827.1\|423644_423845_+\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429
NC_009342.1\|WP_003855814.1\|414451_415195_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NC_009342.1\|WP_011896610.1\|421154_422288_+\|TadA-family-conjugal-transfer-associated-ATPase	unknown	unknown	gnl\|CDD\|200328

Protein	Function_ID	Function_description	E-value
NC_009342.1\|WP_011896612.1\|423045_423621_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	4.65994e-14
NC_009342.1\|WP_006285704.1\|411029_411857_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.87941e-64
NC_009342.1\|WP_003855829.1\|424191_424491_+\|flp-pilus-assembly-TadE/G-like-family-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	9.82352e-08
NC_009342.1\|WP_003855805.1\|409223_410420_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	3.60113e-108
NC_009342.1\|WP_003855806.1\|410441_410915_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	8.09464e-81
NC_009342.1\|WP_011896609.1\|420096_421158_+\|CpaE-like-family-protein	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	1.81521e-90
NC_009342.1\|WP_003855815.1\|415285_416482_+\|MarP-family-serine-protease	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	1.76577e-18
NC_009342.1\|WP_011896606.1\|413898_414459_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.4486e-22
NC_009342.1\|WP_011896607.1\|417048_418044_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.37783e-22
NC_009342.1\|WP_003855810.1\|411932_412616_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.34158e-55
NC_009342.1\|WP_011896603.1\|408286_409231_+\|4-hydroxyphenyl-beta-ketoacyl-CoA-hydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	8.05997e-87
NC_009342.1\|WP_003855817.1\|418058_418610_-\|phage-holin-family-protein	gnl\|CDD\|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	1.12452e-31
NC_009342.1\|WP_011896611.1\|422272_423049_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.27166e-66
NC_009342.1\|WP_003855818.1\|418774_419617_-\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.43247e-74
NC_009342.1\|WP_011896605.1\|413108_413891_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.04156e-106
NC_009342.1\|WP_003855827.1\|423644_423845_+\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	1.21917e-15
NC_009342.1\|WP_003855814.1\|414451_415195_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	3.42473e-51
NC_009342.1\|WP_011896610.1\|421154_422288_+\|TadA-family-conjugal-transfer-associated-ATPase	gnl\|CDD\|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	4.77407e-155

>NC_009342.1|WP_003855815.1|415285_416482_+|MarP-family-serine-protease
MLSPSLVVDAVIVLVMAFALWGGWRQGAFTSLLSTVGVVSGLVVGAAAAPFVMGLTDSTALRFLLAIGTVVLLVGLGNLIGAHLGAAIRDNIKFRSSRTLDSGLGAIFQVLATLIVVWLVAIPLATGLPGTVASGIRDSRILGFVDKYTPQGLDTLPSKIAAMLSESGLPPLISPFTGGSSVEVDAPEINVTNVDLVEAMRPSVIHVMGDAQECSRRLMGSGFVASPDYVVTNAHVVAGTSTVSLDTMIGTRSAEVVFYDPNLDIAVLYSPDLGLDPLPWASTPLDTGDEAIVMGFPQSGPFNASPARVRERIMITGSNIYANGQHEREAYSVRGSIQSGNSGGPMANEMGEVVGVVFGAAIDGSDTGYVLTAEEVQERIGDITSLTQPVDTMQCAVS
>NC_009342.1|WP_003855814.1|414451_415195_+|CoA-pyrophosphatase
MRNYPDLPHDFPGQNTELTPAKAPVWMHRLIDRIHAGHMANPLDGAEPLGDTDSEKRAAVLMLFSGSETSFDLPNDASVLLTHRTPTMRSHAGQIAFPGGRIDTTDTNAVDCAFREAWEETGLDRRTATPLAQLNEVHIRATGYPVYPILGHWHTPSPVAVASPHETDEVFDAPLYDLIDPKNRLMVGWREWHGPAFRINDYIIWGFTGGLLSAILDTAGWATEWDTDRIFDLENTLSTSRNNERMR
>NC_009342.1|WP_011896606.1|413898_414459_+|TlpA-family-protein-disulfide-reductase
MTSSAKWSIVGVVAILAVIVALIPQLVGGESAEEAQGETSTSKITTRPDCVASGAAGVDLPCLGGANGVGNELATVVNLWAWWCEPCRAELPIFDEFATTHPELNVIGVHADQNAANGAALLEDLGVNLASYQDDSNLFAGALGLPGVVPITIVVSPDGNVVDTFPQPFETIDDLETAVAGALQNA
>NC_009342.1|WP_011896605.1|413108_413891_+|endonuclease-III
MGSITPQKRPRVGSHIANKGQETDIGRKRRARRINRTLTVAYPDAHCELDFTNPLELTVATILSAQCTDVRVNQVTPALFKRYPTAADYANADRTELEEFIRPTGFYRNKATSLIGLGEALISLHDGQVPGTLEQLVELPGVGRKTANVVLGNAFGVPGITVDTHFGRLVRRLKLTDEEDPVKVEKVMNELIEKPEWTMFSHRLIFHGRRICHSRRAACGACMLAADCPSFGLEGPSDPFEAQKLIKSDDREHLLKMAGM
>NC_009342.1|WP_011896604.1|412877_413063_-|hypothetical-protein
MTGLLVVIIPLLLMLFAFAMERIESSFLHSNTPQSTEVKLAKDAIGAENLNDDDVQEASAA
>NC_009342.1|WP_003855810.1|411932_412616_-|Crp/Fnr-family-transcriptional-regulator
MEGVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR
>NC_009342.1|WP_006285704.1|411029_411857_+|MBL-fold-metallo-hydrolase
MEHPAYSQLRPVTPSASVVLCPNPGYSSLEGTNSWVIRAPEDPRSIVIDPGPEDEGHLNVLHSKAEEVGLILLTHRHYDHADGAQRFRQLTNAPVRAMDPTYCAGAEEIHDGEIITIDGVTPQIEVVATPGHTRDSVSYFIWSGVPHESTLEGIVSGDTIAGRHTTMISETDGDLGEYLNSLAILEERGKDIPLLPGHGPDGQDVSSFARKYIERRELRLNQIREVWETRGRDVSMKDLIDAIYDDVDPVLRGAAEQSTHVAIRYLQAQEASASN
>NC_009342.1|WP_003855806.1|410441_410915_+|MaoC-family-dehydratase
MTTSTTPNTIISFEDAPTLTGQDLGFSQWRTVTQEMVNTFADATDDQQWIHTDPERAKDGPFGGAIAHGFLTLSMIIPFWGELLDVTGVTTKVNYGLDKVRFTSPVKVGSRIRMGAVVREISEVKGNGLHLVADGTIEIEGQERPAVVATFLTRFYA
>NC_009342.1|WP_003855805.1|409223_410420_+|acyl-CoA-dehydrogenase-family-protein
MRDPIQGAVIPSDLFGFAEVLTEAERAVLLETRRVLEEEVKPYINEAWDKAVFPNAIMQPLQDLQLLDPPALREAGESVRDIFTGFRNFELARCDINVGTYYNASAGLFRTACMVGGSPEQAQRLDAQIKSGEVKGVFALTEPDHGSDIAGGLATTATKDADTGEWIINGEKRWIGGASTADLIATFARDTADNQVKCFLVAPQAEGVSMEIIDRKASLRIMQNAHITYNNVRVSEDARLHNINSFKDVSECLRRMRSDVAWMAVGAQAGAYEAAVKYVRSREQFGRPIAGFQLIQEKLALMLGNLTASLGMMVKLTEQQQAGIFKEENSALAKMFTSLKLRETASWAREICGGNGIILDNDVARFHADAEAVYSYEGTHEINALIVGRAITGVSAFI
>NC_009342.1|WP_011896603.1|408286_409231_+|4-hydroxyphenyl-beta-ketoacyl-CoA-hydrolase
MSNNVVKYECAVDADNIVAVDMHVHLEVDSCGHESMPADIMEASSKYFKAAERTPSADAIADIYREHKMAAVVFTIDARTQMGHLPNSIDDLVASCARNNDVLIPFGSVDPRTGEDALVEARRQVEELGVRGFKFHPSVQGFDPSAPEFYPLWELLESFGLPCVFHTGQNGMGAGLPGGRGIKLRFSNPLLLDDIAADFPNLTIIMAHPSVPWQDEANSIATHKANVFIDLSGWSPKYFPESLVRQSNNVLSKKVLFGTDFPLITPEKWLAAFANLPLKDEVRPGILKDNAVKVLGLAASTERGSQAEKAVQHA
>NC_009342.1|WP_011896607.1|417048_418044_-|alpha/beta-hydrolase
MAFFSFSTSPLTRLIPGSRSKATGAKRRLNSTIASIERSPGIIALDGPFTHDHVSVRGIRLHLAEAGSPTKPLVLLIHGAFGGWYDYREVIGPLADAGFHVAAIDLRGYGMSDKPPTGYDLRHAAGELSSVIAALGHDDAFLVGSDTGASIAWAIASMYPERVRGLISLGAIHPLDMRRAIRRKPHLHVSDLSRLAPFRLPSFLHNLFQFGITRAARREIVNNTSSSYQRSNAFTEAVLLRKKALSIDHTITPIIRTNRYLVGSIPSKTVSAPVWLLRTNSRRWEHLANTARTRTTGPFTTIAIPGGYELPYLENPSEFAATIAEFARTTF
>NC_009342.1|WP_003855817.1|418058_418610_-|phage-holin-family-protein
MSNKDGLFTDGSSTFAPKVDSIPLSDVDTSVSGEASIGTLISNATSQMSSLFRAEVELAKTELAGEAKKAAIGGGAFSVAGVIALYSSFFFFFFVAALLSEWIKPWAAFLIVFLFMLVIAAALALFGWRKVKKMGAPKNTIQSVNQLKNLVPGQASEKLEKANKRGLYTSASFHSPGAITGDH
>NC_009342.1|WP_003855818.1|418774_419617_-|HAD-family-hydrolase
MKHPDPAQKVEGTTATTPTKVAAFFDLDKTIIAMSSTYAYGREFMNSGLISPVEALQLSLAQATYMFAGHTSEQMDNTRDQLTAMIHGWEVQQVRSIAEETMHSVVTPTIYAEARELIEHHQELGHDVIIISASVKELVEPIARELGVHKTVTTVLEAHDGMYTGEVLFYCKGDAKAQSILDLAEANNYDLSLSFAYSDSFTDLPMLEAVGNPAAVNPDRALKKIALEQGWKILSFKNPEPLFQMPSTRDVGIGTGVVAGIAAVAAGSIWWMKRARRGSA
>NC_009342.1|WP_011896609.1|420096_421158_+|CpaE-like-family-protein
MNTTTHQAILIAVEDPVLHPEAMHVAAATGRPVIETTNLMDISRHFHRASAVLIDTSMASQLSPGKRRDRVFLLDSDPGPSDWKTAMKIHAEQAMLLPAQAGELLSALGRDDKQLPVASGHVIGVAGVVGGTGASTFAAALAKRRAESATTVLIDADPSSGGIDLLLGIEDVPGARWPDVGLRRGTVQAADVLKALPSTPDEVVVLSTARSNVLDPFALSESDVSAAIDCFLSADRSVDVVVDLPHARVHPDIAERLSHLVLVIPAEVRAVAAARARYMELQQLHVSITCVLRHRGWSGLDVAEVEEILGADITAEVGSIQRLAKSVEMHGLTGSLPRVLSSACDAVIGEVAA
>NC_009342.1|WP_011896610.1|421154_422288_+|TadA-family-conjugal-transfer-associated-ATPase
MTDIDLVVENVQRIIATKATPPTSAEIASLIREQAGVISNEDIVMVLRRLRSDSVGVGPLESLLALPGVTDVLVNAHDSVWIDRGQGVEKVDMDLGSEEAVRRLATRLALTCGRRLDDAQPFADGRITRDDGSVLRIHAVLAPLAESGTCISVRVLRQARLSLDDLINSGTVPEDIAPALRNIINQRRSFLVVGGTGTGKTTLLSAMLTEVPADQRIICIEDTAELHPGHPSIINLVSRQANVEGAGAVSMADLLKQSLRMRPDRIVVGEIRGAEVVDLLAAMNTGHDGGAGTIHANSISEVPARMEALAATGGLDRMALHSQLAAAVDIVLVMKHTPFGRRLAQLGVLCGNPVTTQVVWDLDHGMHEGSEEAWFMP
>NC_009342.1|WP_011896611.1|422272_423049_+|type-II-secretion-system-F-family-protein
MVYALGLLSVAVLISGSRGPGARTRPPTPGNGVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQTHAAAQRTKQSLQLASFLSLCAGNLRAGVTMVDAMDYALDNTTPDKFLSPTLQTAARQARSGGSGPRVLIDASLPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATAVILTVLPLAGLLMGTAMGANPLGILTGGGIGGLLLVIGVGLDAAGFVVTHKILQSASPS
>NC_009342.1|WP_011896612.1|423045_423621_+|type-II-secretion-system-F-family-protein
MITALVIAAVAMFLGSPNPGVRGGLISPKSGKSLRIRAGPKKLGNADPVDVSADIELFSACLDAGLNTRDAAQVVAHVAAKTHRELWTHVVALLSIGVSAPQAFALMAGVDGLDELANLATVSHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIAMPLALCFLPAFMIVGLAPVVLSLGTQLINF
>NC_009342.1|WP_003855827.1|423644_423845_+|DUF4244-domain-containing-protein
MSNNLELLRLRTRAILAQDDGLTTVEYALGTLAAAALAAVLYMVVNSDAVSSAFESIISDALSARP
>NC_009342.1|WP_003863285.1|423848_424169_+|hypothetical-protein
MRTKQQREPPELCSDDGSVSIEAALALSSLVIVCGLIIAAMATLAAYLAAVDAAGAAARAHAIGESFEPARGHVDMHEAGGMLTATATIPAPIGQVSASAVFPVEN
>NC_009342.1|WP_003855829.1|424191_424491_+|flp-pilus-assembly-TadE/G-like-family-protein
MTIASAGVASILISLLVVLAWQAGNLVAREQAQVAADVSAVAGAYAFARGELPDAACATAKHTAEANNAQLENCATEGEDLTLTVTVRGQEAHAKAGPL

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Crispr_ID: NC_009342_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009342_3

553076-553170

Orphan

Consensus_repeat	Method
AAGTTTTCGGTCACCTAGTTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009342_3

>merge|NC_009342|3|553076-553170|CRISPRCasFinder
AAGTTTTCGGTCACCTAGTTTGGTTTTCAACCCGCGATACCAAACTATTTGACCGAAAATTCTCCCGGAAGCAATTTTCGGTCACCTAGTTTGGT

>NC_009342|3|3|553076-553170|CRISPRCasFinder
AAGTTTTCGGTCACCTAGTTTGGT	TTTCAACCCGCGATACCAAACTATTTGACCGAAAATTCTCCCGGAAG
CAATTTTCGGTCACCTAGTTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009342.1\|WP_044026894.1\|543287_543524_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_009342.1\|WP_003855557.1\|552505_552781_-\|ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|223300
NC_009342.1\|WP_011896696.1\|557926_559723_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|224503
NC_009342.1\|WP_003855572.1\|560256_561276_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NC_009342.1\|WP_173328339.1\|543612_545004_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_009342.1\|WP_003855576.1\|561930_562443_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_011896700.1\|565308_566385_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NC_009342.1\|WP_011896691.1\|551196_551634_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|237270
NC_009342.1\|WP_011896690.1\|546694_547579_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_009342.1\|WP_003855548.1\|545005_545914_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_009342.1\|WP_011896695.1\|556119_557199_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270265
NC_009342.1\|WP_003855550.1\|546406_546691_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_011896694.1\|554465_556112_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_009342.1\|WP_011896693.1\|553412_554465_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_009342.1\|WP_003855554.1\|549293_551150_+\|dehydroshikimate-dehydratase-QsuB	unknown	unknown	gnl\|CDD\|225726
NC_009342.1\|WP_003860437.1\|551648_552500_+\|quinate/shikimate-dehydrogenase-(NAD+)	unknown	unknown	gnl\|CDD\|172521
NC_009342.1\|WP_011896697.1\|559748_560168_+\|DUF3806-domain-containing-protein	unknown	unknown	gnl\|CDD\|372263
NC_009342.1\|WP_011896699.1\|562556_565193_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|225127
NC_009342.1\|WP_011896698.1\|561305_561890_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_003855553.1\|547854_549258_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927

Protein	Function_ID	Function_description	E-value
NC_009342.1\|WP_044026894.1\|543287_543524_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	8.00015e-14
NC_009342.1\|WP_003855557.1\|552505_552781_-\|ribosomal-protein-L7/L12	gnl\|CDD\|223300	COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis].	3.19956e-16
NC_009342.1\|WP_011896696.1\|557926_559723_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|224503	COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism].	2.65587e-64
NC_009342.1\|WP_003855572.1\|560256_561276_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NC_009342.1\|WP_173328339.1\|543612_545004_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	3.1234e-159
NC_009342.1\|WP_011896700.1\|565308_566385_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	5.28348e-180
NC_009342.1\|WP_011896691.1\|551196_551634_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|237270	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed.	1.73126e-83
NC_009342.1\|WP_011896690.1\|546694_547579_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.5449e-33
NC_009342.1\|WP_003855548.1\|545005_545914_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.02456e-133
NC_009342.1\|WP_011896695.1\|556119_557199_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.75061e-100
NC_009342.1\|WP_003855553.1\|547854_549258_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.69864e-159
NC_009342.1\|WP_011896694.1\|554465_556112_-\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.92486e-103
NC_009342.1\|WP_011896693.1\|553412_554465_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.52367e-129
NC_009342.1\|WP_003855554.1\|549293_551150_+\|dehydroshikimate-dehydratase-QsuB	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	3.57184e-131
NC_009342.1\|WP_003860437.1\|551648_552500_+\|quinate/shikimate-dehydrogenase-(NAD+)	gnl\|CDD\|172521	PRK14027, PRK14027, quinate/shikimate dehydrogenase (NAD+).	0
NC_009342.1\|WP_011896699.1\|562556_565193_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	8.83042e-172
NC_009342.1\|WP_011896697.1\|559748_560168_+\|DUF3806-domain-containing-protein	gnl\|CDD\|372263	pfam12713, DUF3806, Domain of unknown function (DUF3806). This family represent the C-terminal domain of the structure. In two related Bacteroides species the gene lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7 whose C-terminal domain is a phage integrase, pfam00589.	6.99348e-21

>NC_009342.1|WP_003855557.1|552505_552781_-|ribosomal-protein-L7/L12
MFGRKDINLSALEARVAALERRLAEQDQIIAQLGGDSSTPLSLQRPQSGLHPDVVALLQQGKKIAAIKRHRELTGAGLKEAKETVEASRFY
>NC_009342.1|WP_003860437.1|551648_552500_+|quinate/shikimate-dehydrogenase-(NAD+)
MNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDANGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLSL
>NC_009342.1|WP_011896691.1|551196_551634_+|type-II-3-dehydroquinate-dehydratase
MLGKILLLNGPNLNMLGKREPDIYGHDTLEDVVALATAEAAKHGLEVEALQSNHEGELIDALHNARGTHIGCVINPGGLTHTSVALLDAVKASELPTVEVHISNPHAREEFRHHSYISLAAVSVIAGAGIQGYRFAVDILANLKK
>NC_009342.1|WP_003855554.1|549293_551150_+|dehydroshikimate-dehydratase-QsuB
MRTSIATVCLSGTLAEKLRAAADAGFDGVEIFEQDLVVSPHSAEQIRQRAQDLGLTLDLFQPFRDFEGVEEEQFLKNLHRLEEKFKLMNRLGIEMILLCSNVGTATINDDDLFVEQLHRAADLAEKYNVKIAYEALAWGKFVNDFEHAHALVEKVNHKALGTCLDTFHILSRGWETDEVENIPAEKIFFVQLADAPKLSMDILSWSRHHRVFPGEGDFDLVKFMVHLAKTGYDGPISLEIFNDSFRKAEVGRTAIDGLRSLRWLEDQTWHALNAEDRPSALELRALPEVAEPEGVDFIEIATGRLGETIRVLHQLGFRLGGHHCSKQDYQVWTQGDVRIVVCDRGATGAPTTISAMGFDTPDPEAAHARAELLRAQTIDRPHIEGEVDLKGVYAPDGVELFFAGPSPDGMPEWLPEFGVEKQEAGLIEAIDHVNFAQPWQHFDEAVLFYTALMALETVREDEFPSPIGLVRNQVMRSPNDAVRLLLSVAPEDGEQGDFLNAAYPEHIALATADIVAVAERARKRGLDFLPVPENYYDDVQARFDLPQEFLDTLKENHLLYDCDENGEFLHFYTRTLGTLFFEVVERRGGFAGWGETNAPVRLAAQYREVRDLERGIPN
>NC_009342.1|WP_003855553.1|547854_549258_+|MHS-family-MFS-transporter
MSEQLQGVTHSESTQGKTPKRAALSSWIGSALEYYDFAVYGTAAALVLNHLFFPADTSPGIAILAAMGTVGVAYVVRPLGALIMGPLGDRYGRKFVLMLCLFLIGASTFAVGCLPTFDQVGYLAPALLVLCRVIQGLSASGEQSSAISVSLEHADERHRAFTASWTLHGTQFGTLLATGVFIPFTLFLSEDALMSWGWRVPFWLSAAVVLVAFLIRRGLEEPPAFRENKEAVAGAASPLAMTLRYHKAAVARVAIAAMINSVNIVFTVWALSFATNIVGLDRSTVLLVPVVANLVALIAIPLSGMLADRIGRRPVFIMGAIGGGLAMNGYLGAIYSGNWTMIFFMGVLMSGLLYSMGNAVWPAFYAEMFPTSVRVTGLALGTQIGFAVSGGFVPVIASALAGDQGDQWMKVSIFVGVVCVISALVAMTAKETKALTLDEIDALHTARGEAADLAAANKASEAQLAAK
>NC_009342.1|WP_011896690.1|546694_547579_-|LysR-family-transcriptional-regulator
MHLNQLEFFITVAQHGQINRAAEELLISQPALSRQISALEKSVGAPLFERHSRGVSLTKAGEILHEEALRTLSRMQSVVDEIQSGEHLITSINIGVPPGIPIDWLRCQLIDLGPETRISLIESPTDDQLKLLKQRELDIALCRRQSEAFATTLVHEQELGIVVRKNSELHQKVAGKDNATLFDLEGLRVLAHSRGEVRIQEEILKNAMLAAGVNATWIFRKFGQYSSLIADLVQADVALTTEESARTNFPSWQWVPIEGEDASGNDLVVRTWITWNPQPTPAVKALIQKFIDGN
>NC_009342.1|WP_003855550.1|546406_546691_+|hypothetical-protein
MRIPRKAIRNIQVVDNVISSVDRPIKRTGRLRIPGVFVAGTHAYVNETLSENEFSMCRKNEPGLVIELENISIDRIVISTPDAHRYADELMAAV
>NC_009342.1|WP_003855548.1|545005_545914_+|hydroxymethylbilane-synthase
MTLKIGTRGSKLATTQAGTIRDQLKYFGRDAELHIVTTPGDVNMSPVERIGVGVFTQALRDVLHAGECDVAVHSMKDLPTAADPRFHLVVPTRADSREALIARDGLTLAELPEGAKVGTSAPRRISQLKAIRPDLEILPLRGNIDTRMGKVTSGELDAVMLAYAGLTRVGMQDRATEVFDADIIMPAPAQGALAIECRADDTETVRALNMLMHADTFVSAVAERTVLNRLEAGCTAPVAAHATLDGYSGDTMTLTAGVYALDGSDQLVFSAEGDGARPEELGELVAQQLIDAGAANLLGDRS
>NC_009342.1|WP_173328339.1|543612_545004_+|glutamyl-tRNA-reductase
MSVLIVGMSHRSAPVSLLERLSMDDSVRGETTQALLGRASLSEALIVSTCNRLEVYTVTSSFHTGVNDVVEVLHEASGVDIETLRGYLYVRYADAAAEHMLVVTSGLDSMVLGEQQIIGQVRTAYQAANEYGSVGPALHSLTQTALHTGKRVHSETAIDDAGASMVSFAVDRALVQMGLDSEAEAPLSGKTALVLGAGAMSSLAATHLGRAGISKLIMANRTLERAERLAEHSLEAGVPAEVVEYDQRASAYNRVDLVVSATGADDFTVKPEDIPEGASLMLVDLSMPRDIDDACADLPGVDLVNIERLHKASREGGSGMAPSEEEALAIVREELDSFTSEQRIRDIVPAVSALRRQAASVGSDELDRLRQRAPGISEVEWGEVEKTVRRVVDKLLHQPTVRVKELAARSGSISYDSALQELFGLESLASTAAPATTSVNASELPDAGIVAFVNAPSATQTRE
>NC_009342.1|WP_044026894.1|543287_543524_+|glutaredoxin-family-protein
MGHSVEIIVRDNCGSCVRVKAQILPIVGAAGIKLTERNVDQDASLKLEFGDRVPVILVDDEEFACWEVDNDELANALL
>NC_009342.1|WP_011896693.1|553412_554465_-|ABC-transporter-ATP-binding-protein
MSSIKLRDLSVSFRDGTFGLQDINLKIEPEEFVVLIGPSGSGKTTMLRTIAGFVEPSSGSVLIGGEDMTHVPPERRRMGMVFQQHAVWPHMSVAKNVGYPLARSGQKGASISKRVERTLALVGLEGFGSRRPASLSGGQRQRVALARAIIADPTVLLLDEALSALDEPLRDALRRELVSLSRREGLTTVHVTHDRAEAISIADRIVVLGNGRIQQVATPTELLSAPATADVARFIVDATVLNGIVRNGRVMCPDLDTSWDLDAVQAIDDIFDGDLVDIAIPPHSVGIGPAHHPDYIFAEITSVLFQVTSYSATAKTQSGHSFRMSITCSVPEIGETIGLSIDNPMVYRAD
>NC_009342.1|WP_011896694.1|554465_556112_-|iron-ABC-transporter-permease
MQLSPSNTSTQRFHISALASLSFMRLGMWLIVAGLFITPLALVVGLALGGNQFPALWDSGLGKALWNSAYTTVLSAVGATIIGTIMALTLDRTDVFGRTALRLFLLSPLLIPPFIGAIAWLQLFGKNQGINRFFGTEVWDIYGADGVTFLLIVHSYPTVYIIVSAALRQLPSDLEQAARIAGADTFTVLRTITLPLLKPALLSAFTLTAVANLADFGIPALLGSPARFETLATMIYRFMESGTVSNPLQVVSTIGVVLLFLGIAAVTADYLVSLYAASKLQDAGTPHRFTLNKSRIPVSVITWIIALIITAAPLLGLAYRALLPAPGVPFNLDNITLNNFEAALSNPRVIEGFGNSLMLSLGAALICGVLGWLIGVLITRTQHFANVPLTLTVLLPTALPGMIIGVGWLILGRYTGIYNTPWVILGAYVCAFTALVVQAVRGPLSQAPEAIEEAARISGAGRLRSIMDTTGAMAIPAAFAGAVLVAVTAVRELTVSILLIAPGTTTLGVQVFNLQQAGNYNQASALSLMFAIIGIVALALTVRSQKEF
>NC_009342.1|WP_011896695.1|556119_557199_-|ABC-transporter-substrate-binding-protein
MSSKHPLKRTATTVFALGASAALLVACSEPSEDVSTAETTTASSSANASDAAGEKVTITVYTSEPEEKVDEINKAFMEANPDIEVEVYRAGTGDLTARIEAEKASGSIEADVLWAADAATFETYAAQGDLAELEDVDTSDLIEEALDAENFYVGTRIIPTVIAYNTEVVDQAELPTSWADLTDPKYAGQLVMPDPAVSGAAAFNASVWKNDPALGEVWITALGENQPMIAQSNGPTSQEIAGGGHPVGIVVDYLVRDLAAAGSPIDTIYASEGSPYITEPAGVFADSEKKEAAERYINFLLSVEGQEIAVEQAYLPVREDVGTPEGTPELADIELMTPDLEVVTADKAAAVEFFQNAMN
>NC_009342.1|WP_011896696.1|557926_559723_+|uroporphyrinogen-III-synthase
MTIAHKPEMAETTGIETNQVSETIGVESLTHGNLRPVSSFEGQHEGQTEELLPGKVIFVGAGPGNPDLLTVRAREVLGNAVRAITDEQVLSGVRAFVATEIPVPEDKLQAAEDEYERICIEAKENGARRKPPRPAPPTAAEITEVSEATPAQIVELVQNALSYGGDVIRLVTGNPLSSDTTLAEISAVSEAGLEFQVVPGMSLPATVPAFAGIALGSTYTETDVNGQNVDWDQLASAPQPLVLQARVQDLSRIAQELKARNMPLETPVSVTANGTTRLQRTYDTTLGLLHKLDAELNGPLVVTLGKGVDDRSKYSWWENRALYGWRVLVPRAREQAASMSARLSSHGAIPQEVPTISVEPPRNPAQMERAIKGIVEGRYQWVVLTSVNAVKAVWEKITEFGLDSRSFAGVRIAAVGEKTAAEIRALGITPELLPARTRQNAQGLVDVFPEYFEELDPVGRVLLPRADIATDVLVDGLTHLGWEVEDVVAYRTVRAAPPSADIRDMIKTGGFDAVAFTSSSTVKNLVGIAGKPHPRTIVACIGPMTAATAEELGLRVDVMPEIAEVPELIDALAEHVADLRAKGELPPPRKKRRRRKAS
>NC_009342.1|WP_011896697.1|559748_560168_+|DUF3806-domain-containing-protein
MDIQQLDAETTAWKDSLLCATQEAGFHFEPPKLFEDFEAMVEQYKQAAASDPDIDVTDIQQMWGIVVGEYLREKMGMDWVIITDDYGTDLAILATAPNGDHVYSCPIIVVGKRFSTDYEPGQLEFFCNQFIVTSLAQLQ
>NC_009342.1|WP_003855572.1|560256_561276_+|porphobilinogen-synthase
MSTSSDYSHALIRRPRRLRANPAMRELVAETALRPADLILPMFFADGITEAREISSMPGVYQHTEDSLLRAAHEALDAGVRCVDLFGVPMDADKDFNGSQAWSETGVLNRALASLRKEFGDDLLIMADTCLDEFTDHGHCGVVTEDRHGNAIVDNDATLPLYQQMAVAQARAGAHIVSPSGMMDGQIAAIRAALDEEGYQDVAIMAYSAKYASAFFGPFREAVGSSLQGDRRTYQQDPANLRESLLEAELDIAEGADFIMVKPALPYLDVLTRIADTSPVPVAAYQVSGEYAMIQAAGRNGWVDLDAVMMESLTSIKRAGANQILTYFAVDAARALRNA
>NC_009342.1|WP_011896698.1|561305_561890_+|hypothetical-protein
MSMLPNLTPKKSAPPSSSASAKNAGEKKEDTVKLLIQMWAVMIGLELLHQILNVVMSFTDPTALRTVAKEQAAAQGLSEGIVNATVIAAILVMGFFNLIVIAILSWMVVMVKNRSKRLPTAFLLLTIFSFFFILRVLMLFFASPGGTDVPMALFAIDGCVQILVGVSAGVAYALSRTEQPVKMLTDYAPEDAKR
>NC_009342.1|WP_003855576.1|561930_562443_+|hypothetical-protein
MPSMFPSPATGGDDINRRPLNEPNADATTIPTALKVVFWMLFATAAFMIFTGLVMYTAGYTGPDDVDESYKAVVVNNQEFIGGINAFAGIVIAALTSQLPKGGKNPRRLLLAIMLLVLLTDLLSFATRAGGFALAIIAVLLALEALLMFRPAVNDHIDRNHMARVMNREK
>NC_009342.1|WP_011896699.1|562556_565193_+|cation-translocating-P-type-ATPase
MSTPDSSSVDKAVNTAISDAKTAALKAGVGLNRATAPEEEEDLSSSIKVSLAFELEGLSNAPSLMAVEKALEKIPGVSADLIYPSQTAWITATDRVHPETLIGVFEQFGIKAQLSNSSLLRRHQQLSAEVNREARIDRYRSRMDAKRISPRVRRHNRQEMVHAVRARESGWIKRMNHTTSQHEDPMSGDVLFTARALITPMRLWVSLPFALIVLALSLNPSWQFDYWQWLSAVLAIPVVVWGAWPFHRAAAGGIRRGISALDATSSIAIAAAYAWSIAMLLFETPGNKSWRSYPSWFAFNHGTLTQNEIYFDVACGITVLLLGGRLLTRRRSQSSLLAELGRLQIDPQRIVTVVRKHRLKRVVQELNIPVQEVRVNDDVKVPPNTTIPVDGTVIGGGSRIAASIIMGQDQRDVKVNDKVFAGSLNLESEIKVRVIRTGHRTRIAAVHRWVKQATLQENRHNRAAIRSAGNLVPITFTLAVVDFCLWALISGNINAAFTTTLAVLACVAPVALALSAPLATRNSIEAAARHGILVRSGEIFRVLDDVDTAVFNRVGTLTDGEMTVETVTADKGEDPELVLRVAGALAMESHHAISKALVKASREARDTGAGGEDVPHWIEVGNVEITEAGSFQATIELPLIKPSGEKIMRTTEALLWRPRSMTEVREHLSPRLVAAATSGGAPLIVRWKGKDRGVITLSDHVRSDSSDAIIAIEEQGIETMMLSRDTYPVARRYADSLGITHVLAGIAPGKKAQVVRAVHTRGSTVAMIGDESVMDCLKVADVGVLMGVDRPSELRDDSDDPAADVVVMREEVMSVPTLFKLARRYAKLVNGNIALAWIYNGVAMVVAVSGLLHPMAATVAMLASSLLIEWRSGRARKY
>NC_009342.1|WP_011896700.1|565308_566385_+|uroporphyrinogen-decarboxylase
MSALTIPAARRTLNNAPIIDAANGKTPTRTPVWFMRQAGRSLPEYKKVREGISMLDSCFMPELLAEITLQPVRRHDVDAAILFSDIVVPLRAAGVGVEIVAGRGPVLDAPVRSREDVLNLPILEGNVPEVEQGIGIILDELSDSQALIGFAGAPFTLASYLVEGGPSKNHEKTKAMMHGDPETWHALMARLVPTIVNSLKSQIDAGIDAMQLFDSWAGFLTERDYTEFVLPYSTEILEEVGKYQLPRIHFGVGTGELLGAMSKAGSEVMGVDWRVPLDKAAERIAAVSGPKVLQGNLDPALLFAGRAPLTKEIERIKAEAQTAIDAGHATGHIFNLGHGVLPNTVAEDITEAVSIIHS

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Crispr_ID: NC_009342_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009342_4

792955-799754

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CRISPRCasFinder
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CRT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	PILER-CR
GGAAATACCTCCGCGTGTGCGGAGAAGAG	PILER-CR

111 spacers

cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_009342_4

>merge|NC_009342|4|792955-799754|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GGGAGTACCTCCGCGTGTGCGGAGAAGAGTCCTGGCGGGATTCTGCACGCGTCGCACCGTCGGAAATACCTCCGCGTGTGCGGAGAAGAGGGTCGACGTCTGTCTCTGCGCTGAGTCAGGCGGGAAATACCTCCGCGTGTGCGGAGAAGAGCCGATGAGTCTCTCGGCTCTGTTGGCTAAGTGGGAAATACCTCCGCGTGTGCGGAGAAGAGTCTGCGTCGTGTAGCGGGAACGGTGAGGAAACGGAAATACCTCCGCGTGTGCGGAGAAGAGAAAATTCCGGCTCCGTGACCTTAGCTATAGACGGAAATACCTCCGCGTGTGCGGAGAAGAGCTTTCTGATCCGACTTGACCATGTAGGAACCAGGAAATACCTCCGCGTGTGCGGAGAAGAGAACCAGAAACAGACTATCTATGTCTGCCTAAAGGAAATACCTCCGCGTGTGCGGAGAAGAGCTCAGGCAGCTATTGAGGAGCTGGGGTTGAGCGGAAATACCTCCGCGTGTGCGGAGAAGAGGAGGCACTCCAGCAGTACGTCTCACGTGTCATGGAAATACCTCCGCGTGTGCGGAGAAGAGCGAGATGAGGGACGCAGCCATGTGTAATAGGAAGAAATACCTCCGCGTGTGCGGAGAAGAGCCCTCGCGAAGCTAGGCCAATTCCGCCCAATCGGAAATACCTCCGCGTGTGCGGAGAAGAGCACAAACCAGCGCCCCAAATAACACGGCCTGAGGAAATACCTCCGCGTGTGCGGAGAAGAGTTGAATAATGTTGCGTAATGTAACATCTTGCTGGAAATACCTCCGCGTGTGCGGAGAAGAGCGCCCCAAGCATCAAACTGGTTGCCGTACTCAGGAAATACCTCCGCGTGTGCGGAGAAGAGGTTAATGCACTTGATTTTCTCTACTTTTGGTAGGAAATACCTCCGCGTGTGCGGAGAAGAGCATGATGCGCGACGACGGCACGGTGTGCCCTGGGAAATACCTCCGCGTGTGCGGAGAAGAGGCAAGCTCCTCATCGCGGAAATCCACATCAGTGGAAATACCTCCGCGTGTGCGGAGAAGAGCAACCCCCACGGGTCTTCTGCTCACGAAGCTCGGAAATACCTCCGCGTGTGCGGAGAAGAGAATCACCACATATCGCACTGCTCTGCTGACTGGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGAACCTGGACTCCACCAACGCCACCAACGGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGAACCTGGACTCCACCAACGCCACCAACGGGAAATACCTCCGCGTGTGCGGAGAAGAGGCGATGTGCTGGATCTGCTCTTCGGTCAAAATGGAAATACCTCCGCGTGTGCGGAGAAGAGGCTCCTCGGTGATGATGTCGAATCCGAAAAGTGGAAATACCTCCGCGTGTGCGGAGAAGAGCCAACCCATTGCCCTTGTGACGAAACTTGGTGGGAAATACCTCCGCGTGTGCGGAGAAGAGCCTGCGGAAGAAACCATCCGGCACATTATTCAGGAAATACCTCCGCGTGTGCGGAGAAGAGTATTTCAAGCCCCGCAATGACGCGGGGCTTTCAGAAATACCTCCGCGTGTGCGGAGAAGAGACGATACATTGAGGCCAATGATGAGATTGCACGGAAATACCTCCGCGTGTGCGGAGAAGAGATCGCGAATGCTCACCCGTTACACCAGCCTTGGGAAATACCTCCGCGTGTGCGGAGAAGAGAATGGGACATTCCTAGCTGGGTGAGATCATCAGGAAATACCTCCGCGTGTGCGGAGAAGAGAATCGCGCTCCAGCTGGGCGAAAGCGTACCCCGGAAATACCTCCGCGTGTGCGGAGAAGAGCGGCTATCATCGCCTGGCGAATATCTTCCTGAGGAAATACCTCCGCGTGTGCGGAGAAGAGCCGTTGCCATCTGGTCAAGCTTGGAGTATAGGGGAAATACCTCCGCGTGTGCGGAGAAGAGCAAACCCTGGCCAAGGAAGCCCAGGTATCTGCGGAAATACCTCCGCGTGTGCGGAGAAGAGATGTGGTGTTTCAGCAGGTGGGTCGCGATGGTGGAAATACCTCCGCGTGTGCGGAGAAGAGCTGGGTGGATCATGAGCCGTGAGGTGGCCAGTGGAAATACCTCCGCGTTTGCGGAGAAGAGGTCCAGTTGGTCTCCGACTGCTGTTAACCCGAGGAAATACCTCCGCGTGTGCGGAGAAGAGAGTAGCGCGGGACAGTGCGGTAATCACGCCGGGGAAATACCTCCGCGTGTGCGGAGAAGAGACGGGCCAGTGCCCAACATGCACGACCCTTTATGAAATACCTCCGCGTGTGCGGAGAAGAGCTTTGGTCGCGATACACGCAAGATTGGAGTGAGGAAATACCTCCGCGTGTGCGGAGAAGAGGTTTCTAGGAATTTGGCTTGCCCACCACTGGGGGAAATACCTCCGCGTGTGCGGAGAAGAGCATCGGGAAGAAAACACGGTATAGCGTAGGCCGGAAATACCTCCGCGTGTGCGGAGAAGAGACGGAGATGTAGTAGAACCCCTGGAGGGCTATGGAAATACCTCCGCGTGTGCGGAGAAGAGCCGGTGGGGTCGCGGAGGAAGCCTTCTTTGGCGGAAATACCTCCGCGTGTGCGGAGAAGAGCGTTCAGTCGTGCGATACGGCGGTCATAAATGGGAAATACCTCCGCGTGTGCGGAGAAGAGGGCTAGATCCATTCGATTCCCGCATGTCCACAGGAAATACCTCCGCGTGTGCGGAGAAGAGTCGGTGCGCCAGGTGCGGGCCTCGATGATGTTGGAAATACCTCCGCGTGTGCGGAGAAGAGAGTTGCCCACACGGGTAAGCCAATCTCGAACAGGAAATACCTCCGCGTGTGCGGAGAAGAGGGAAACACCGCCGTGCATGATCTCAACACAATGGAAATACCTCCGCGTGTGCGGAGAAGAGTTTGCCGGTCGCTGAGGTGAGTTTCGTTTCTCGGAAATACCTCCGCGTGTGCGGAGAAGAGCAGACTGACGTACGGATTAAGGGTGGCGCGCTGGAAATACCTCCGCGTGTGCGGAGAAGAGGGCTACCTCGACGATGAGGGCAAGCAAGCCATGGAAATACCTCCGCGTGTGCGGAGAAGAGCCGAAACGCCAACCACAGTGCGGGTGGATTGAGGAAATACCTCCGCGTGTGCGGAGAAGAGGTGAAGTTACCTGGTTTAAAGCATCCGATGTGTGAAATACCTCCGCGTGTGCGGAGAAGAGATTCATGGGGATACCGGATGGAGGGATGTCACGGAAATACCTCCGCGTGTGCGGAGAAGAGAGAGCGCGTGGCAAACCAAGGGGGAGATCATTGGAAATACCTCCGCGTGTGCGGAGAAGAGTGGTCGGTGTGGTAAATGGTGCGCTGATTGCCGGAAATACCTCCGCGTGTGCGGAGAAGAGGTGCCCCGTTGATGTATGCCCACGCTGTTGAGGGAAATACCTCCGCGTGTGCGGAGAAGAGCCTGCAGGGCTAGAGAACGCTCTCTATAGGCTGGAAATACCTCCGCGTGTGCGGAGAAGAGCTTCTCTTCAGCTTTCGCAATGGACTCAGCGCGGAAATACCTCCGCGTGTGCGGAGAAGAGCTGATCAGGTTGTGAAGTTGGCTGCTATCGGTGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGCTCATGGTCTCGCCGATCGTGACATGAAGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGCTCATGGTCTCGCCGATCGTGACATGAAGGAAATACCTCCGCGTGTGCGGAGAAGAGTCCAGGCCGCAAGTTATGAATAAGGGCGATCAGGAAATACCTCCGCGTGTGCGGAGAAGAGTACCGAACACTGGATGTGCGGTTTAATAGCGTGGAAATACCTCCGCGTGTGCGGAGAAGAGCCACGAAATACAGTTCGGACATGACAACCCACGGAAATACCTCCGCGTGTGCGGAGAAGAGGTGCACCGCGCTGAGGTTGCAGCAGCACAAGCGGAAATACCTCCGCGTGTGCGGAGAAGAGCGATCCGCCGGTAGGTCTGCCAGCGTTTTCTAGGAAATACCTCCGCGTGTGCGGAGAAGAGGCAGATGTTCACATGGACATGAGTACGGAAACGGAAATACCTCCGCGTGTGCGGAGAAGAGATAACCGCACCCCCGCCCCACTGAGGCAGGAGGGAAATACCTCCGCGTGTGCGGAGAAGAGGTTAAGGTGATGGACGCGATTGTGGATGCAATGGAAATACCTCCGCGTGTGCGGAGAAGAGTGTGCAACAACTGTGGTGAGGTCTATTGACCAGGAAATACCTCCGCGTGTGCGGAGAAGAGTCCTTTTTAAGCACTTTGAGTCCCCTTAGCCAGGAAATACCTCCGCGTGTGCGGAGAAGAGGCATCAAATGAATCATTGATAGGTGGGTATTTGGAAATACCTCCGCGTGTGCGGAGAAGAGTTTGGCCCGGAGGTTGCTGAAACGTTCTGGGAGGAAATACCTCCGCGTGTGCGGAGAAGAGATATCATGTGCCAGGGCAAGCTGCTCCGGGGTGGAAATACCTCCGCGTGTGCGGAGAAGAGGAAATCAATCCCGCCCGTCGTGGTGACACCTTGGAAATACCTCCGCGTGTGCGGAGAAGAGTTCACCGGTGCCATCGCAGCCTGCTTCAACCCGGAAATACCTCCGCGTGTGCGGAGAAGAGAGGTCGTAGGCCTCCGTGGAGGTTTTCGACATGGAAATACCTCCGCGTGTGCGGAGAAGAGAATCCGCAGCTTGTGCCAGCCACTCCGAAGCAGGAAATACCTCCGCGTGTGCGGAGAAGAGTTGTTCGTCGGTGAGTTCGCCGGGTTCAGGTGGGAAATACCTCCGCGTGTGCGGAGAAGAGCGCAATAACTCAGGTGCCATGGCCAGTGGGTTGGAAATACCTCCGCGTGTGCGGAGAAGAGGGGGGCTGAGGAATAATGTTCACTCTTGAAGAGGAAATACCTCCGCGTGTGCGGAGAAGAGAACCAAATCTTGCCGAACCTGTTGGTTATAGCGGAAATACCTCCGCGTGTGCGGAGAAGAGGCTATGCGTTTCCCTGACGGCACCTATTTGGAGGAAATACCTCCGCGTGTGCGGAGAAGAGCAGATGGCACACCAATCTGGGACGCGCCACTAGGAAATACCTCCGCGTGTGCGGAGAAGAGAGGATTACGCGACGGCGGTGGAGGAACATGCCGGAAATACCTCCGCGTGTGCGGAGAAGAGAAGTGGTGGCCAGTTCCTCGACGGTGATTGCGGGAAATACCTCCGCGTGTGCGGAGAAGAGTGAACGCCACCTGAATTCCGGTGGCGATTTTCGGAAATACCTCCGCGTGTGCGGAGAAGAGCGAGCAGGGAAACCATTGCTCAATACATGGGAGGAAATACCTCCGCGTGTGCGGAGAAGAGGGTGATGGGCTTCAAGCGTCCCGCGTGGGAGGGGAAATACCTCCGCGTGTGCGGAGAAGAGCGCGACCAACGCTTCATACGCTGGTGGATCGAGGAAATACCTCCGCGTGTGCGGAGAAGAGATTGCGCGCTCGACGTCGGTGGTGCCGGTTTTGGAAATACCTCCGCGTGTGCGGAGAAGAGACATTCCCGTGAATGTGCTCTGAGTGTTATCCGGAAATACCTCCGCGTGTGCGGAGAAGAGACAGCCCCCAAACCGGCAAAGGTACTGTCACTGGAAATACCTCCGCGTGTGCGGAGAAGAGGTCGAGTTCGCCACCGAAGCAGGCGACCGCGTGGAAATACCTCCGCGTGTGCGGAGAAGAGCCCGATACGCGGAGCAATTCAGAGGCTCTGTAGGAAATACCTCCGCGTGTGCGGAGAAGAGCCAGAAACCAGCACACAAGGAGAACTCACCGTGGAAATACCTCCGCGTGTGCGGAGAAGAGGAAAGCGCTACGTCTTTCTCCTCAACCAGGTCGGAAATACCTCCGCGTGTGCGGAGAAGAGGCCCTCTGCTAAAACTTCCACTCAATCTCCTAGGAAATACCTCCGCGTGTGCGGAGAAGAGGCAACCTTGTGGAGGTCTACGAGGGTTCTGTAGGAAATACCTCCGCGTGTGCGGAGAAGAGGGCTTGTGGACGAGTTTGTCTTCCAGGCCGTAGGAAATACCTCCGCGTGTGCGGAGAAGAGCCCGGGTCATCAGTTTTCGCAGTGAGTATGTTGGAAATACCTCCGCGTGTGCGGAGAAGAGTTCCTTGTTTCTCGTCAGTGTCGGCGTGCGTTGGAAATACCTCCGCGTGTGCGGAGAAGAGCTTAGGCGAATGCTGCTTTGAGATCCGCAAGAGGAAATACCTCCGCGTGTGCGGAGAAGAGAATTCGCGGGCGATAAGAATTTCGCCTTTACCGGAAATACCTCCGCGTGTGCGGAGAAGAGCCACGACAGTGCCCGCAGCAGGAACATTTACAGGAAATACCTCCGCGTGTGCGGAGAAGAGGGACTGCGCGTTCAACCTCGCTATTCAAATGAGGAAATACCTCCGCGTGTGCGGAGAAGAGCGTAGCCCATGACTGCGATGTAGTGGTAGACCGGAAATACCTCCGCGTGTGCGGAGAAGAGACTCACTGACGTGTACACAGCCATGTACCAGCGGAAATACCTCCGCGTGTGCGGAGAAGAGCGAAATCCACGAAATCAACCGCCTTGATTCCTCGAAATACCTCCGCGTGTGCGGAGAAGAGAGCAGGAGTGATCATGGCAGATAAAGGTGATCGGAAATACCTCCGCGTGTGCGGAGAAGAG

>NC_009342|4|4|792955-799754|CRISPRCasFinder
GGGAGTACCTCCGCGTGTGCGGAGAAGAG	TCCTGGCGGGATTCTGCACGCGTCGCACCGTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGTCGACGTCTGTCTCTGCGCTGAGTCAGGCG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGATGAGTCTCTCGGCTCTGTTGGCTAAGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCTGCGTCGTGTAGCGGGAACGGTGAGGAAAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AAAATTCCGGCTCCGTGACCTTAGCTATAGAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTTCTGATCCGACTTGACCATGTAGGAACCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AACCAGAAACAGACTATCTATGTCTGCCTAAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTCAGGCAGCTATTGAGGAGCTGGGGTTGAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAGGCACTCCAGCAGTACGTCTCACGTGTCAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAGATGAGGGACGCAGCCATGTGTAATAGGA
AGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCTCGCGAAGCTAGGCCAATTCCGCCCAATC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CACAAACCAGCGCCCCAAATAACACGGCCTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTGAATAATGTTGCGTAATGTAACATCTTGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCCCCAAGCATCAAACTGGTTGCCGTACTCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTAATGCACTTGATTTTCTCTACTTTTGGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CATGATGCGCGACGACGGCACGGTGTGCCCTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAAGCTCCTCATCGCGGAAATCCACATCAGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAACCCCCACGGGTCTTCTGCTCACGAAGCTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCACCACATATCGCACTGCTCTGCTGACTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGAACCTGGACTCCACCAACGCCACCAACG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGAACCTGGACTCCACCAACGCCACCAACG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCGATGTGCTGGATCTGCTCTTCGGTCAAAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTCCTCGGTGATGATGTCGAATCCGAAAAGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAACCCATTGCCCTTGTGACGAAACTTGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCGGAAGAAACCATCCGGCACATTATTCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TATTTCAAGCCCCGCAATGACGCGGGGCTTTC
AGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGATACATTGAGGCCAATGATGAGATTGCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATCGCGAATGCTCACCCGTTACACCAGCCTTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATGGGACATTCCTAGCTGGGTGAGATCATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCGCGCTCCAGCTGGGCGAAAGCGTACCCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGGCTATCATCGCCTGGCGAATATCTTCCTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGTTGCCATCTGGTCAAGCTTGGAGTATAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAAACCCTGGCCAAGGAAGCCCAGGTATCTGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATGTGGTGTTTCAGCAGGTGGGTCGCGATGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGGGTGGATCATGAGCCGTGAGGTGGCCAGT
GGAAATACCTCCGCGTTTGCGGAGAAGAG	GTCCAGTTGGTCTCCGACTGCTGTTAACCCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTAGCGCGGGACAGTGCGGTAATCACGCCGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGGCCAGTGCCCAACATGCACGACCCTTTA
TGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTTGGTCGCGATACACGCAAGATTGGAGTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTTCTAGGAATTTGGCTTGCCCACCACTGGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CATCGGGAAGAAAACACGGTATAGCGTAGGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGAGATGTAGTAGAACCCCTGGAGGGCTAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGGTGGGGTCGCGGAGGAAGCCTTCTTTGGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTTCAGTCGTGCGATACGGCGGTCATAAATG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTAGATCCATTCGATTCCCGCATGTCCACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCGGTGCGCCAGGTGCGGGCCTCGATGATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTTGCCCACACGGGTAAGCCAATCTCGAACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGAAACACCGCCGTGCATGATCTCAACACAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGCCGGTCGCTGAGGTGAGTTTCGTTTCTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGACTGACGTACGGATTAAGGGTGGCGCGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTACCTCGACGATGAGGGCAAGCAAGCCAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGAAACGCCAACCACAGTGCGGGTGGATTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGAAGTTACCTGGTTTAAAGCATCCGATGTG
TGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTCATGGGGATACCGGATGGAGGGATGTCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGAGCGCGTGGCAAACCAAGGGGGAGATCATT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGGTCGGTGTGGTAAATGGTGCGCTGATTGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCCCCGTTGATGTATGCCCACGCTGTTGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCAGGGCTAGAGAACGCTCTCTATAGGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTCTCTTCAGCTTTCGCAATGGACTCAGCGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGATCAGGTTGTGAAGTTGGCTGCTATCGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCAGGCCGCAAGTTATGAATAAGGGCGATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TACCGAACACTGGATGTGCGGTTTAATAGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGAAATACAGTTCGGACATGACAACCCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCACCGCGCTGAGGTTGCAGCAGCACAAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGATCCGCCGGTAGGTCTGCCAGCGTTTTCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAGATGTTCACATGGACATGAGTACGGAAAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATAACCGCACCCCCGCCCCACTGAGGCAGGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTAAGGTGATGGACGCGATTGTGGATGCAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGTGCAACAACTGTGGTGAGGTCTATTGACCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCTTTTTAAGCACTTTGAGTCCCCTTAGCCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCATCAAATGAATCATTGATAGGTGGGTATTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGGCCCGGAGGTTGCTGAAACGTTCTGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATATCATGTGCCAGGGCAAGCTGCTCCGGGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAATCAATCCCGCCCGTCGTGGTGACACCTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCACCGGTGCCATCGCAGCCTGCTTCAACCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGTCGTAGGCCTCCGTGGAGGTTTTCGACAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCCGCAGCTTGTGCCAGCCACTCCGAAGCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTGTTCGTCGGTGAGTTCGCCGGGTTCAGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCAATAACTCAGGTGCCATGGCCAGTGGGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGGGGCTGAGGAATAATGTTCACTCTTGAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AACCAAATCTTGCCGAACCTGTTGGTTATAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTATGCGTTTCCCTGACGGCACCTATTTGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGATGGCACACCAATCTGGGACGCGCCACTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGATTACGCGACGGCGGTGGAGGAACATGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AAGTGGTGGCCAGTTCCTCGACGGTGATTGCG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGAACGCCACCTGAATTCCGGTGGCGATTTTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAGCAGGGAAACCATTGCTCAATACATGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGTGATGGGCTTCAAGCGTCCCGCGTGGGAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCGACCAACGCTTCATACGCTGGTGGATCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTGCGCGCTCGACGTCGGTGGTGCCGGTTTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACATTCCCGTGAATGTGCTCTGAGTGTTATCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACAGCCCCCAAACCGGCAAAGGTACTGTCACT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTCGAGTTCGCCACCGAAGCAGGCGACCGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGATACGCGGAGCAATTCAGAGGCTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAGAAACCAGCACACAAGGAGAACTCACCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAAGCGCTACGTCTTTCTCCTCAACCAGGTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCCCTCTGCTAAAACTTCCACTCAATCTCCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAACCTTGTGGAGGTCTACGAGGGTTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTTGTGGACGAGTTTGTCTTCCAGGCCGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGGGTCATCAGTTTTCGCAGTGAGTATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCCTTGTTTCTCGTCAGTGTCGGCGTGCGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTAGGCGAATGCTGCTTTGAGATCCGCAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATTCGCGGGCGATAAGAATTTCGCCTTTACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGACAGTGCCCGCAGCAGGAACATTTACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGACTGCGCGTTCAACCTCGCTATTCAAATGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTAGCCCATGACTGCGATGTAGTGGTAGACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACTCACTGACGTGTACACAGCCATGTACCAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAAATCCACGAAATCAACCGCCTTGATTCCT
CGAAATACCTCCGCGTGTGCGGAGAAGAG	AGCAGGAGTGATCATGGCAGATAAAGGTGATC
GGAAATACCTCCGCGTGTGCGGAGAAGAG

>NC_009342|4|1|792955-799754|CRT
GGGAGTACCTCCGCGTGTGCGGAGAAGAG	TCCTGGCGGGATTCTGCACGCGTCGCACCGTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGTCGACGTCTGTCTCTGCGCTGAGTCAGGCG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGATGAGTCTCTCGGCTCTGTTGGCTAAGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCTGCGTCGTGTAGCGGGAACGGTGAGGAAAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AAAATTCCGGCTCCGTGACCTTAGCTATAGAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTTCTGATCCGACTTGACCATGTAGGAACCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AACCAGAAACAGACTATCTATGTCTGCCTAAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTCAGGCAGCTATTGAGGAGCTGGGGTTGAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAGGCACTCCAGCAGTACGTCTCACGTGTCAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAGATGAGGGACGCAGCCATGTGTAATAGGA
AGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCTCGCGAAGCTAGGCCAATTCCGCCCAATC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CACAAACCAGCGCCCCAAATAACACGGCCTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTGAATAATGTTGCGTAATGTAACATCTTGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCCCCAAGCATCAAACTGGTTGCCGTACTCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTAATGCACTTGATTTTCTCTACTTTTGGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CATGATGCGCGACGACGGCACGGTGTGCCCTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAAGCTCCTCATCGCGGAAATCCACATCAGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAACCCCCACGGGTCTTCTGCTCACGAAGCTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCACCACATATCGCACTGCTCTGCTGACTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGAACCTGGACTCCACCAACGCCACCAACG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGAACCTGGACTCCACCAACGCCACCAACG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCGATGTGCTGGATCTGCTCTTCGGTCAAAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTCCTCGGTGATGATGTCGAATCCGAAAAGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAACCCATTGCCCTTGTGACGAAACTTGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCGGAAGAAACCATCCGGCACATTATTCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TATTTCAAGCCCCGCAATGACGCGGGGCTTTC
AGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGATACATTGAGGCCAATGATGAGATTGCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATCGCGAATGCTCACCCGTTACACCAGCCTTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATGGGACATTCCTAGCTGGGTGAGATCATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCGCGCTCCAGCTGGGCGAAAGCGTACCCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGGCTATCATCGCCTGGCGAATATCTTCCTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGTTGCCATCTGGTCAAGCTTGGAGTATAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAAACCCTGGCCAAGGAAGCCCAGGTATCTGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATGTGGTGTTTCAGCAGGTGGGTCGCGATGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGGGTGGATCATGAGCCGTGAGGTGGCCAGT
GGAAATACCTCCGCGTTTGCGGAGAAGAG	GTCCAGTTGGTCTCCGACTGCTGTTAACCCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTAGCGCGGGACAGTGCGGTAATCACGCCGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGGCCAGTGCCCAACATGCACGACCCTTTA
TGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTTGGTCGCGATACACGCAAGATTGGAGTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTTCTAGGAATTTGGCTTGCCCACCACTGGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CATCGGGAAGAAAACACGGTATAGCGTAGGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGAGATGTAGTAGAACCCCTGGAGGGCTAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGGTGGGGTCGCGGAGGAAGCCTTCTTTGGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTTCAGTCGTGCGATACGGCGGTCATAAATG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTAGATCCATTCGATTCCCGCATGTCCACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCGGTGCGCCAGGTGCGGGCCTCGATGATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTTGCCCACACGGGTAAGCCAATCTCGAACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGAAACACCGCCGTGCATGATCTCAACACAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGCCGGTCGCTGAGGTGAGTTTCGTTTCTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGACTGACGTACGGATTAAGGGTGGCGCGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTACCTCGACGATGAGGGCAAGCAAGCCAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGAAACGCCAACCACAGTGCGGGTGGATTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGAAGTTACCTGGTTTAAAGCATCCGATGTG
TGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTCATGGGGATACCGGATGGAGGGATGTCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGAGCGCGTGGCAAACCAAGGGGGAGATCATT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGGTCGGTGTGGTAAATGGTGCGCTGATTGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCCCCGTTGATGTATGCCCACGCTGTTGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCAGGGCTAGAGAACGCTCTCTATAGGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTCTCTTCAGCTTTCGCAATGGACTCAGCGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGATCAGGTTGTGAAGTTGGCTGCTATCGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCAGGCCGCAAGTTATGAATAAGGGCGATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TACCGAACACTGGATGTGCGGTTTAATAGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGAAATACAGTTCGGACATGACAACCCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCACCGCGCTGAGGTTGCAGCAGCACAAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGATCCGCCGGTAGGTCTGCCAGCGTTTTCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAGATGTTCACATGGACATGAGTACGGAAAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATAACCGCACCCCCGCCCCACTGAGGCAGGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTAAGGTGATGGACGCGATTGTGGATGCAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGTGCAACAACTGTGGTGAGGTCTATTGACCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCTTTTTAAGCACTTTGAGTCCCCTTAGCCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCATCAAATGAATCATTGATAGGTGGGTATTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGGCCCGGAGGTTGCTGAAACGTTCTGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATATCATGTGCCAGGGCAAGCTGCTCCGGGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAATCAATCCCGCCCGTCGTGGTGACACCTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCACCGGTGCCATCGCAGCCTGCTTCAACCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGTCGTAGGCCTCCGTGGAGGTTTTCGACAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCCGCAGCTTGTGCCAGCCACTCCGAAGCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTGTTCGTCGGTGAGTTCGCCGGGTTCAGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCAATAACTCAGGTGCCATGGCCAGTGGGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGGGGCTGAGGAATAATGTTCACTCTTGAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AACCAAATCTTGCCGAACCTGTTGGTTATAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTATGCGTTTCCCTGACGGCACCTATTTGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGATGGCACACCAATCTGGGACGCGCCACTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGATTACGCGACGGCGGTGGAGGAACATGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AAGTGGTGGCCAGTTCCTCGACGGTGATTGCG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGAACGCCACCTGAATTCCGGTGGCGATTTTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAGCAGGGAAACCATTGCTCAATACATGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGTGATGGGCTTCAAGCGTCCCGCGTGGGAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCGACCAACGCTTCATACGCTGGTGGATCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTGCGCGCTCGACGTCGGTGGTGCCGGTTTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACATTCCCGTGAATGTGCTCTGAGTGTTATCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACAGCCCCCAAACCGGCAAAGGTACTGTCACT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTCGAGTTCGCCACCGAAGCAGGCGACCGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGATACGCGGAGCAATTCAGAGGCTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAGAAACCAGCACACAAGGAGAACTCACCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAAGCGCTACGTCTTTCTCCTCAACCAGGTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCCCTCTGCTAAAACTTCCACTCAATCTCCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAACCTTGTGGAGGTCTACGAGGGTTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTTGTGGACGAGTTTGTCTTCCAGGCCGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGGGTCATCAGTTTTCGCAGTGAGTATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCCTTGTTTCTCGTCAGTGTCGGCGTGCGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTAGGCGAATGCTGCTTTGAGATCCGCAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATTCGCGGGCGATAAGAATTTCGCCTTTACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGACAGTGCCCGCAGCAGGAACATTTACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGACTGCGCGTTCAACCTCGCTATTCAAATGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTAGCCCATGACTGCGATGTAGTGGTAGACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACTCACTGACGTGTACACAGCCATGTACCAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAAATCCACGAAATCAACCGCCTTGATTCCT
CGAAATACCTCCGCGTGTGCGGAGAAGAG	AGCAGGAGTGATCATGGCAGATAAAGGTGATC
GGAAATACCTCCGCGTGTGCGGAGAAGAG

>NC_009342|4|1|792960-793106|PILER-CR
TACCTCCGCGTGTGCGGAGAAGAGTCCTGG	CGGGATTCTGCACGCGTCGCACCGTCGGAAAT
ACCTCCGCGTGTGCGGAGAAGAGGGTCGAC	GTCTGTCTCTGCGCTGAGTCAGGCGGGAAATA
CCTCCGCGTGTGCGGAGAAGAGCCGATGAGTCTCTCGGCTCTGTTGGCTAAGTGGGAAATACCTCCGCGTGTGCGGAGAAGAGTCTGCGTCGTGTAGCGGGAACGGTGAGGAAACGGAAATACCTCCGCGTGTGCGGAGAAGAGAAAATTCCGGCTCCGTGACCTTAGCTATAGACGGAAATACCTCCGCGTGTGCGGAGAAGAGCTTTCTGATCCGACTTGACCATGTAGGAACCAGGAAATACCTCCGCGTGTGCGGAGAAGAGAACCAGAAACAGACTATCTATGTCTGCCTAAAGGAAATACCTCCGCGTGTGCGGAGAAGAGCTCAGGCAGCTATTGAGGAGCTGGGGTTGAGCGGAAATACCTCCGCGTGTGCGGAGAAGAGGAGGCACTCCAGCAGTACGTCTCACGTGTCATGGAAATACCTCCGCGTGTGCGGAGAAGAGCGAGATGAGGGACGCAGCCATGTGTAATAGGAAGAAATACCTCCGCGTGTGCGGAGAAGAGCCCTCGCGAAGCTAGGCCAATTCCGCCCAATCGGAAATACCTCCGCGTGTGCGGAGAAGAGCACAAACCAGCGCCCCAAATAACACGGCCTGAGGAAATACCTCCGCGTGTGCGGAGAAGAGTTGAATAATGTTGCGTAATGTAACATCTTGCTGGAAATACCTCCGCGTGTGCGGAGAAGAGCGCCCCAAGCATCAAACTGGTTGCCGTACTCAGGAAATACCTCCGCGTGTGCGGAGAAGAGGTTAATGCACTTGATTTTCTCTACTTTTGGTAGGAAATACCTCCGCGTGTGCGGAGAAGAGCATGATGCGCGACGACGGCACGGTGTGCCCTGGGAAATACCTCCGCGTGTGCGGAGAAGAGGCAAGCTCCTCATCGCGGAAATCCACATCAGTGGAAATACCTCCGCGTGTGCGGAGAAGAGCAACCCCCACGGGTCTTCTGCTCACGAAGCTCGGAAATACCTCCGCGTGTGCGGAGAAGAGAATCACCACATATCGCACTGCTCTGCTGACTGGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGAACCTGGACTCCACCAACGCCACCAACGGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGAACCTGGACTCCACCAACGCCACCAACGGGAAATACCTCCGCGTGTGCGGAGAAGAGGCGATGTGCTGGATCTGCTCTTCGGTCAAAATGGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTCCTCGGTGATGATGTCGAATCCGAAAAGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAACCCATTGCCCTTGTGACGAAACTTGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCGGAAGAAACCATCCGGCACATTATTCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TATTTCAAGCCCCGCAATGACGCGGGGCTTTC
AGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGATACATTGAGGCCAATGATGAGATTGCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATCGCGAATGCTCACCCGTTACACCAGCCTTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATGGGACATTCCTAGCTGGGTGAGATCATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCGCGCTCCAGCTGGGCGAAAGCGTACCCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGGCTATCATCGCCTGGCGAATATCTTCCTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGTTGCCATCTGGTCAAGCTTGGAGTATAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAAACCCTGGCCAAGGAAGCCCAGGTATCTGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATGTGGTGTTTCAGCAGGTGGGTCGCGATGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGGGTGGATCATGAGCCGTGAGGTGGCCAGT
GGAAATACCTCCGCGTTTGCGGAGAAGAG	GTCCAGTTGGTCTCCGACTGCTGTTAACCCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTAGCGCGGGACAGTGCGGTAATCACGCCGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGGCCAGTGCCCAACATGCACGACCCTTTA
TGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTTGGTCGCGATACACGCAAGATTGGAGTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTTCTAGGAATTTGGCTTGCCCACCACTGGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CATCGGGAAGAAAACACGGTATAGCGTAGGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGAGATGTAGTAGAACCCCTGGAGGGCTAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGGTGGGGTCGCGGAGGAAGCCTTCTTTGGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTTCAGTCGTGCGATACGGCGGTCATAAATG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTAGATCCATTCGATTCCCGCATGTCCACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCGGTGCGCCAGGTGCGGGCCTCGATGATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTTGCCCACACGGGTAAGCCAATCTCGAACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGAAACACCGCCGTGCATGATCTCAACACAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGCCGGTCGCTGAGGTGAGTTTCGTTTCTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGACTGACGTACGGATTAAGGGTGGCGCGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTACCTCGACGATGAGGGCAAGCAAGCCAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGAAACGCCAACCACAGTGCGGGTGGATTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGAAGTTACCTGGTTTAAAGCATCCGATGTG
TGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTCATGGGGATACCGGATGGAGGGATGTCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGAGCGCGTGGCAAACCAAGGGGGAGATCATT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGGTCGGTGTGGTAAATGGTGCGCTGATTGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCCCCGTTGATGTATGCCCACGCTGTTGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCAGGGCTAGAGAACGCTCTCTATAGGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTCTCTTCAGCTTTCGCAATGGACTCAGCGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGATCAGGTTGTGAAGTTGGCTGCTATCGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCAGGCCGCAAGTTATGAATAAGGGCGATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TACCGAACACTGGATGTGCGGTTTAATAGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGAAATACAGTTCGGACATGACAACCCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCACCGCGCTGAGGTTGCAGCAGCACAAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGATCCGCCGGTAGGTCTGCCAGCGTTTTCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAGATGTTCACATGGACATGAGTACGGAAAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATAACCGCACCCCCGCCCCACTGAGGCAGGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTAAGGTGATGGACGCGATTGTGGATGCAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGTGCAACAACTGTGGTGAGGTCTATTGACCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCTTTTTAAGCACTTTGAGTCCCCTTAGCCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCATCAAATGAATCATTGATAGGTGGGTATTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGGCCCGGAGGTTGCTGAAACGTTCTGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATATCATGTGCCAGGGCAAGCTGCTCCGGGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAATCAATCCCGCCCGTCGTGGTGACACCTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCACCGGTGCCATCGCAGCCTGCTTCAACCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGTCGTAGGCCTCCGTGGAGGTTTTCGACAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCCGCAGCTTGTGCCAGCCACTCCGAAGCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTGTTCGTCGGTGAGTTCGCCGGGTTCAGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCAATAACTCAGGTGCCATGGCCAGTGGGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGGGGCTGAGGAATAATGTTCACTCTTGAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AACCAAATCTTGCCGAACCTGTTGGTTATAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTATGCGTTTCCCTGACGGCACCTATTTGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGATGGCACACCAATCTGGGACGCGCCACTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGATTACGCGACGGCGGTGGAGGAACATGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AAGTGGTGGCCAGTTCCTCGACGGTGATTGCG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGAACGCCACCTGAATTCCGGTGGCGATTTTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAGCAGGGAAACCATTGCTCAATACATGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGTGATGGGCTTCAAGCGTCCCGCGTGGGAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCGACCAACGCTTCATACGCTGGTGGATCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTGCGCGCTCGACGTCGGTGGTGCCGGTTTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACATTCCCGTGAATGTGCTCTGAGTGTTATCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACAGCCCCCAAACCGGCAAAGGTACTGTCACT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTCGAGTTCGCCACCGAAGCAGGCGACCGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGATACGCGGAGCAATTCAGAGGCTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAGAAACCAGCACACAAGGAGAACTCACCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAAGCGCTACGTCTTTCTCCTCAACCAGGTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCCCTCTGCTAAAACTTCCACTCAATCTCCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAACCTTGTGGAGGTCTACGAGGGTTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTTGTGGACGAGTTTGTCTTCCAGGCCGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGGGTCATCAGTTTTCGCAGTGAGTATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCCTTGTTTCTCGTCAGTGTCGGCGTGCGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTAGGCGAATGCTGCTTTGAGATCCGCAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATTCGCGGGCGATAAGAATTTCGCCTTTACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGACAGTGCCCGCAGCAGGAACATTTACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGACTGCGCGTTCAACCTCGCTATTCAAATGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTAGCCCATGACTGCGATGTAGTGGTAGACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACTCACTGACGTGTACACAGCCATGTACCAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAAATCCACGAAATCAACCGCCTTGATTCCT
CGAAATACCTCCGCGTGTGCGGAGAAGAG	AGCAGGAGTGATCATGGCAGATAAAGGTGATC


>NC_009342|4|2|794297-799754|PILER-CR
	CGGGATTCTGCACGCGTCGCACCGTCGGAAAT
ACCTCCGCGTGTGCGGAGAAGAGGGTCGAC	GTCTGTCTCTGCGCTGAGTCAGGCGGGAAATA
CCTCCGCGTGTGCGGAGAAGAGCCGATGAGTCTCTCGGCTCTGTTGGCTAAGTGGGAAATACCTCCGCGTGTGCGGAGAAGAGTCTGCGTCGTGTAGCGGGAACGGTGAGGAAACGGAAATACCTCCGCGTGTGCGGAGAAGAGAAAATTCCGGCTCCGTGACCTTAGCTATAGACGGAAATACCTCCGCGTGTGCGGAGAAGAGCTTTCTGATCCGACTTGACCATGTAGGAACCAGGAAATACCTCCGCGTGTGCGGAGAAGAGAACCAGAAACAGACTATCTATGTCTGCCTAAAGGAAATACCTCCGCGTGTGCGGAGAAGAGCTCAGGCAGCTATTGAGGAGCTGGGGTTGAGCGGAAATACCTCCGCGTGTGCGGAGAAGAGGAGGCACTCCAGCAGTACGTCTCACGTGTCATGGAAATACCTCCGCGTGTGCGGAGAAGAGCGAGATGAGGGACGCAGCCATGTGTAATAGGAAGAAATACCTCCGCGTGTGCGGAGAAGAGCCCTCGCGAAGCTAGGCCAATTCCGCCCAATCGGAAATACCTCCGCGTGTGCGGAGAAGAGCACAAACCAGCGCCCCAAATAACACGGCCTGAGGAAATACCTCCGCGTGTGCGGAGAAGAGTTGAATAATGTTGCGTAATGTAACATCTTGCTGGAAATACCTCCGCGTGTGCGGAGAAGAGCGCCCCAAGCATCAAACTGGTTGCCGTACTCAGGAAATACCTCCGCGTGTGCGGAGAAGAGGTTAATGCACTTGATTTTCTCTACTTTTGGTAGGAAATACCTCCGCGTGTGCGGAGAAGAGCATGATGCGCGACGACGGCACGGTGTGCCCTGGGAAATACCTCCGCGTGTGCGGAGAAGAGGCAAGCTCCTCATCGCGGAAATCCACATCAGTGGAAATACCTCCGCGTGTGCGGAGAAGAGCAACCCCCACGGGTCTTCTGCTCACGAAGCTCGGAAATACCTCCGCGTGTGCGGAGAAGAGAATCACCACATATCGCACTGCTCTGCTGACTGGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGAACCTGGACTCCACCAACGCCACCAACGGGAAATACCTCCGCGTGTGCGGAGAAGAGGATGAACCTGGACTCCACCAACGCCACCAACGGGAAATACCTCCGCGTGTGCGGAGAAGAGGCGATGTGCTGGATCTGCTCTTCGGTCAAAATGGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTCCTCGGTGATGATGTCGAATCCGAAAAGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAACCCATTGCCCTTGTGACGAAACTTGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCGGAAGAAACCATCCGGCACATTATTCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TATTTCAAGCCCCGCAATGACGCGGGGCTTTC
AGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGATACATTGAGGCCAATGATGAGATTGCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATCGCGAATGCTCACCCGTTACACCAGCCTTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATGGGACATTCCTAGCTGGGTGAGATCATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCGCGCTCCAGCTGGGCGAAAGCGTACCCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGGCTATCATCGCCTGGCGAATATCTTCCTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGTTGCCATCTGGTCAAGCTTGGAGTATAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAAACCCTGGCCAAGGAAGCCCAGGTATCTGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATGTGGTGTTTCAGCAGGTGGGTCGCGATGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGGGTGGATCATGAGCCGTGAGGTGGCCAGT
GGAAATACCTCCGCGTTTGCGGAGAAGAG	GTCCAGTTGGTCTCCGACTGCTGTTAACCCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTAGCGCGGGACAGTGCGGTAATCACGCCGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGGCCAGTGCCCAACATGCACGACCCTTTA
TGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTTGGTCGCGATACACGCAAGATTGGAGTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTTCTAGGAATTTGGCTTGCCCACCACTGGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CATCGGGAAGAAAACACGGTATAGCGTAGGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACGGAGATGTAGTAGAACCCCTGGAGGGCTAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGGTGGGGTCGCGGAGGAAGCCTTCTTTGGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTTCAGTCGTGCGATACGGCGGTCATAAATG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTAGATCCATTCGATTCCCGCATGTCCACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCGGTGCGCCAGGTGCGGGCCTCGATGATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGTTGCCCACACGGGTAAGCCAATCTCGAACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGAAACACCGCCGTGCATGATCTCAACACAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGCCGGTCGCTGAGGTGAGTTTCGTTTCTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGACTGACGTACGGATTAAGGGTGGCGCGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTACCTCGACGATGAGGGCAAGCAAGCCAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCGAAACGCCAACCACAGTGCGGGTGGATTGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGAAGTTACCTGGTTTAAAGCATCCGATGTG
TGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTCATGGGGATACCGGATGGAGGGATGTCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGAGCGCGTGGCAAACCAAGGGGGAGATCATT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGGTCGGTGTGGTAAATGGTGCGCTGATTGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCCCCGTTGATGTATGCCCACGCTGTTGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCTGCAGGGCTAGAGAACGCTCTCTATAGGCT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTCTCTTCAGCTTTCGCAATGGACTCAGCGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTGATCAGGTTGTGAAGTTGGCTGCTATCGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GATGCTCATGGTCTCGCCGATCGTGACATGAA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCAGGCCGCAAGTTATGAATAAGGGCGATCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TACCGAACACTGGATGTGCGGTTTAATAGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGAAATACAGTTCGGACATGACAACCCAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTGCACCGCGCTGAGGTTGCAGCAGCACAAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGATCCGCCGGTAGGTCTGCCAGCGTTTTCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAGATGTTCACATGGACATGAGTACGGAAAC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATAACCGCACCCCCGCCCCACTGAGGCAGGAG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTTAAGGTGATGGACGCGATTGTGGATGCAAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGTGCAACAACTGTGGTGAGGTCTATTGACCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TCCTTTTTAAGCACTTTGAGTCCCCTTAGCCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCATCAAATGAATCATTGATAGGTGGGTATTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTTGGCCCGGAGGTTGCTGAAACGTTCTGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATATCATGTGCCAGGGCAAGCTGCTCCGGGGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAATCAATCCCGCCCGTCGTGGTGACACCTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCACCGGTGCCATCGCAGCCTGCTTCAACCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGTCGTAGGCCTCCGTGGAGGTTTTCGACAT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATCCGCAGCTTGTGCCAGCCACTCCGAAGCA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTGTTCGTCGGTGAGTTCGCCGGGTTCAGGTG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCAATAACTCAGGTGCCATGGCCAGTGGGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGGGGCTGAGGAATAATGTTCACTCTTGAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AACCAAATCTTGCCGAACCTGTTGGTTATAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCTATGCGTTTCCCTGACGGCACCTATTTGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CAGATGGCACACCAATCTGGGACGCGCCACTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AGGATTACGCGACGGCGGTGGAGGAACATGCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AAGTGGTGGCCAGTTCCTCGACGGTGATTGCG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TGAACGCCACCTGAATTCCGGTGGCGATTTTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAGCAGGGAAACCATTGCTCAATACATGGGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGTGATGGGCTTCAAGCGTCCCGCGTGGGAGG
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGCGACCAACGCTTCATACGCTGGTGGATCGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ATTGCGCGCTCGACGTCGGTGGTGCCGGTTTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACATTCCCGTGAATGTGCTCTGAGTGTTATCC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACAGCCCCCAAACCGGCAAAGGTACTGTCACT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GTCGAGTTCGCCACCGAAGCAGGCGACCGCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGATACGCGGAGCAATTCAGAGGCTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCAGAAACCAGCACACAAGGAGAACTCACCGT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GAAAGCGCTACGTCTTTCTCCTCAACCAGGTC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCCCTCTGCTAAAACTTCCACTCAATCTCCTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GCAACCTTGTGGAGGTCTACGAGGGTTCTGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGCTTGTGGACGAGTTTGTCTTCCAGGCCGTA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCCGGGTCATCAGTTTTCGCAGTGAGTATGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	TTCCTTGTTTCTCGTCAGTGTCGGCGTGCGTT
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CTTAGGCGAATGCTGCTTTGAGATCCGCAAGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	AATTCGCGGGCGATAAGAATTTCGCCTTTACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CCACGACAGTGCCCGCAGCAGGAACATTTACA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	GGACTGCGCGTTCAACCTCGCTATTCAAATGA
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGTAGCCCATGACTGCGATGTAGTGGTAGACC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	ACTCACTGACGTGTACACAGCCATGTACCAGC
GGAAATACCTCCGCGTGTGCGGAGAAGAG	CGAAATCCACGAAATCAACCGCCTTGATTCCT
CGAAATACCTCCGCGTGTGCGGAGAAGAG	AGCAGGAGTGATCATGGCAGATAAAGGTGATC
GGAAATACCTCCGCGTGTGCGGAGAAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009342.1\|WP_011896830.1\|806802_807885_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_009342.1\|WP_011896827.1\|791942_792386_-\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_003854574.1\|783996_784899_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|227339
NC_009342.1\|WP_011896823.1\|787620_788064_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373955
NC_009342.1\|WP_003854578.1\|785907_787479_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_009342.1\|WP_003854571.1\|781238_782759_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NC_009342.1\|WP_144063648.1\|804554_806126_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_009342.1\|WP_044026949.1\|809513_811094_+\|DNA-polymerase	unknown	unknown	gnl\|CDD\|176458
NC_009342.1\|WP_158300331.1\|803667_804243_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_009342.1\|WP_080506406.1\|799772_800087_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_009342.1\|WP_011896820.1\|782875_784000_+\|GuaB3-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl\|CDD\|236322
NC_009342.1\|WP_011896831.1\|808713_809505_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_044026946.1\|806143_806785_+\|hypothetical-protein	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_009342.1\|WP_011896826.1\|790860_791553_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_009342.1\|WP_044026945.1\|801043_803668_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_009342.1\|WP_044026948.1\|807877_808594_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
NC_009342.1\|WP_003860723.1\|791552_791879_+\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_011896824.1\|788331_789510_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|224894
NC_009342.1\|WP_044026944.1\|800102_801032_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_009342.1\|WP_011896822.1\|784989_785901_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176115

Protein	Function_ID	Function_description	E-value
NC_009342.1\|WP_011896830.1\|806802_807885_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.58958e-87
NC_009342.1\|WP_003854574.1\|783996_784899_-\|DMT-family-transporter	gnl\|CDD\|227339	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism].	6.43737e-105
NC_009342.1\|WP_011896823.1\|787620_788064_+\|hypothetical-protein	gnl\|CDD\|373955	pfam15583, Imm68, Immunity protein 68. A predicted immunity protein with an alpha+beta fold and a conserved glutamate residue. The domain is often fused to one or more immunity domains in poly-immunity proteins.	4.1862e-59
NC_009342.1\|WP_003854578.1\|785907_787479_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_009342.1\|WP_003854571.1\|781238_782759_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NC_009342.1\|WP_144063648.1\|804554_806126_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	8.51791e-06
NC_009342.1\|WP_044026949.1\|809513_811094_+\|DNA-polymerase	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	1.54602e-69
NC_009342.1\|WP_158300331.1\|803667_804243_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	5.32973e-31
NC_009342.1\|WP_080506406.1\|799772_800087_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	5.49454e-31
NC_009342.1\|WP_011896820.1\|782875_784000_+\|GuaB3-family-IMP-dehydrogenase-related-protein	gnl\|CDD\|236322	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein.	0
NC_009342.1\|WP_044026946.1\|806143_806785_+\|hypothetical-protein	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.23171e-06
NC_009342.1\|WP_011896826.1\|790860_791553_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.78465e-57
NC_009342.1\|WP_044026945.1\|801043_803668_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.05694e-53
NC_009342.1\|WP_044026948.1\|807877_808594_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.11899e-24
NC_009342.1\|WP_011896824.1\|788331_789510_-\|PspC-domain-containing-protein	gnl\|CDD\|224894	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms].	1.41791e-15
NC_009342.1\|WP_044026944.1\|800102_801032_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.72719e-65
NC_009342.1\|WP_011896822.1\|784989_785901_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.12489e-43

>NC_009342.1|WP_011896827.1|791942_792386_-|hypothetical-protein
MDPMSSYNDMKSHTTPIPTPVSVRLSSSVLVGAAIASLTTDLAPAVKFSVTGIGLALALLIAFVHPYRGEMRMYRFQNNISPVPTIGQVMPLFFTWLALMLAPIISGAPLWATLLVFLAATGWMYLTFPHVDGSRKLAFAEGPRRNT
>NC_009342.1|WP_003860723.1|791552_791879_+|hypothetical-protein
MAAKKSGAGSRGGAGRSASADKQIDQSQAKFTFQPTRTLLFSVIFTVLVMWQSGFSYWYAIPILFFIWAIFILGHSFYNWANLKLIEMGRRNKQVLEEQEKQKKKRGF
>NC_009342.1|WP_011896826.1|790860_791553_+|response-regulator-transcription-factor
MVDVFLVDDHSVFRSGVKAELGNAVTVVGEAGTVADAVAGIKASKPEVVLLDVHMPDGGGLAVLQQINDSDVDTIFLALSVSDAAEDVIAIIRGGARGYVTKSISGEELVEAINRVKSGDAFFSPRLAGFVLDAFAAPDSAAGAGIVDAPEKDAAVESGKILDDPVVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSNRHALTRWAHSRDLD
>NC_009342.1|WP_011896824.1|788331_789510_-|PspC-domain-containing-protein
MSTFQEPHHNQGFIPFAQPGFEAPTPHLATGTFQQMWQTRPARIPAKQGGHAKVAGVCEGIGVRYQIDPVLIRLFFVVTGVFGAGVAAYLIAWLCMPRYSVPVSPIEALWTPGHTKDRNHGWWLVIAFFMFSGVLSSGAGGIFGPAAAITYLCLLAMWWALHKKQPLPPRGLLTTEFTVSEDPTMKNEDLYPQPQPDLSTITPVEGYYAPFAQQTPEAPHWDPLAQNQYNTWDVQVPPQKPQKKRHVWPWIVGGVVGTGAVISVLGGLFIASIDPIHFEDDAGIGDVYLSPTNDELLSSYTSGVGEMNLDFSHLTQLDQEQNIQITSGIGEVKITLPDDVPVSLSCSAGVGTARCDVGDLTAHNADLEGPMLNLVVNSGIGDVNVEFADQND
>NC_009342.1|WP_011896823.1|787620_788064_+|hypothetical-protein
MSEILETYWAPHFGKTEEATALVSYLAQASGDPIEVHTLFGDLGLDGLSGNYTDTEIDGYGDAFLLVAALSVLMAENKASGGVNLGELGGADKSIRLHVESKENTQINTALKYFALSPEDHAAADRFDEDDLSELANLSEELRGQLD
>NC_009342.1|WP_003854578.1|785907_787479_+|glutamine-hydrolyzing-GMP-synthase
MSLQTNHRPVLVVDFGAQYAQLIARRVREAGIYSEVIPHTATADDVRAKNAAALVLSGGPSSVYAEGAPSLDAEILDLGLPVFGICYGFQAMTHALGGTVANTGKREYGRTDINVAGGVLHEGLEACHKVWMSHGDAVSEAPEGFVVTASSEGAPVAAFENKERKMAGVQYHPEVLHSPHGQAVLTRFLTEIAGLEQNWTAANIAEELIEKVREQIGEDGRAICGLSGGVDSAVAGALVQRAIGDRLTCVFVDHGLLRAGEREQVEKDFVAATGAKLVTVDERQAFLSKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLEEAPEGSTVDFLVQGTLYPDVVESGGGSGTANIKSHHNVGGLPDDVEFKLVEPLRDLFKDEVRAVGRELGLPEEIVGRQPFPGPGLGIRIIGEVTEERLETLRHADLIARTELTAAGLDGVIWQCPVVLLADVRSVGVQGDGRTYGHPIVLRPVSSEDAMTADWTRLPYEVLEKISTRITNEVPDVNRVVLDVTSKPPGTIEWE
>NC_009342.1|WP_011896822.1|784989_785901_+|LysR-family-transcriptional-regulator
MLNLNRLHILQEFHRLGTITAVAESMNYSRSAISQQMALLEKEIGVKLFEKSGRNLYFTEQGEVLASETHAIMAAVDHARAAVLDSMSEVSGTLKVTSFQSLLFTLAPKAIARLTEKYPHLQVEISQLEVTAALEELRARRVDVALGEEYPVEVPLVEASIHREVLFEDPMLLVTPASGPYSGLTLPELRDIPIAIDPPDLPAGEWVHRLCRRAGFEPRVTFETSDPMLQAHLVRSGLAVTFSPTLLTPMLEGVHIQPLPDNPTRTLYTAVREGRQGHPAIKAFRRALAHVAKESYLEARLVE
>NC_009342.1|WP_003854574.1|783996_784899_-|DMT-family-transporter
MNKQSAAVLMVMGSALSLQFGAAIGTQLFPLIGPWSVTSLRLFIAGLIMCLVIRPRLRSWTKKQWIAVLLLGLSLGGMNSLFYASIELIPLGTAVTIEFLGPLIFSAVLARTLKNGLCVALAFLGMALLGIDSLSGETLDPLGVIFAAVAGIFWVCYILASKKIGQLIPGTSGLAVALIIGAVAVFPLGATHMGPIFQTPTLLILALGTALLGSLIPYSLELSALRRLPAPIFSILLSLEPAFAAAVGWILLDQTPTALKWAAIILVIAASIGVTWEPKKMLVDAPLHLKTQREEASTHT
>NC_009342.1|WP_011896820.1|782875_784000_+|GuaB3-family-IMP-dehydrogenase-related-protein
MRDHVEIGIGREARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSDALASPKFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHSAPLDTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAKEAAGKGYFWPAVAAHPRFPRGVVTESVELDEQAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLKSFQKVSLHVN
>NC_009342.1|WP_003854571.1|781238_782759_+|IMP-dehydrogenase
MTTQSRVSTGGDNPNKVALVGLTFDDVLLLPDASDVVPSEVDTSTQLTRNIRLNTPILSAAMDTVTEARMAIGMARHGGIGVLHRNLSIQEQAENVELVKRSESGMVTDPVTCTPDMSIQEVDDLCARFRISGLPVVDEAGKLVGICTNRDMRFESDMNRRVAEVMTPMPLVVAEEGVTKEQALALLSANKVEKLPIIAKDGKLVGLITVKDFVKTEQHPNASKDASGRLLVAAGIGTGEESFQRAGALADAGVDILVVDSAHAHSRGVLDMVSRVKKAFPKVDIVGGNLATREAAQAMIEAGADAIKVGIGPGSICTTRVVAGVGAPQITAIMEAAVPAHKAGVPIIADGGMQFSGDIAKALAAGANSVMLGSMLAGTAEAPGETITINGKQYKRYRGMGSMGAMQGRGLSGEKRSYSKDRYFQSDVKSEDKLVPEGIEGRVPFRGAIGDIIHQQVGGLRAAMGYTGSSTIEELHNARFVQITSAGLKESHPHHIQQTVEAPNYH
>NC_009342.1|WP_080506406.1|799772_800087_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MFLVIVSRSLPDHLSGYLSRFLSEVDTGVFVGNVSRRVRDNLWKRCGQALKSGSLTMINNDPSREQGFAVNTMGPRRRNIIDMDGLLLVSTLSSAIAKNDRNDS
>NC_009342.1|WP_044026944.1|800102_801032_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MAYSDDAISFSTIPVDHQIRLEDRVSFAYLEYCSVRQDKTGVVAYSQQDGEPVETRIQIPASAMAVLMLGPGCSISNAALTSCTRAGATVLFTGGGGVPAYSHATPLTSSARWAIAQANLVASETKQRTAAIILYKRQLGLDDLQDAPSISVMRGLEGRAMKLKYRELARKHDIKNFRREVKSDDPVNQGLNLANSILYGCAATACSALGINPALGIIHRGDARSLLFDLADLYKPTVSLPLAFQSASEPNSLEFLRRRLRQEIHRQDILKELVKVLIEILTPHLPIRDDDRLISGRGDEVSGHTQYGS
>NC_009342.1|WP_044026945.1|801043_803668_-|CRISPR-associated-helicase/endonuclease-Cas3
MSQYEELWAKKEGLPQPYPLLAHLLDSAAMGQTLFDYWLRSGLQDLIREELGPKTREIVGWIIGIHDLGKANPVFQGQPGQQGDDWEAIRKKIINSGNCSFPPTLFDAPKPYLQDNALRRHEQQTALYFSENWPIENGEIEDQWNLIPVLGHHGYFEVPFLKPGNKSKTLRRRKPEFERLGWFKAQADIEAQLLKGLNLNSDEIPSRVSSTVSILLSGLTILADRLASQLTWIEASQQKIKTTEKSLSTPVDWINSTYEPAIDIIKQNLGIYKNGGPNWNSHILKGYEPRKAQKLAMEAGDGLEILMAPTGNGKTEAALLRHAQKDERLIFLLPTQATTNAMMKRVQKAFEGTPNVSSLAHSLATIEDFYETPVTTFEDTEKGCDSGGLFPNEFVRRGLSRLLASVTVATVDQALKGALQIKWSHLLLLSLANSHIVIDEAHTLEHYQSELLSNLLPWLGATHTRVTLLTATLPTWQAKKFLAAYNKFSLDSELEFPALLSAERQQHFETPPYTIDTSIDEVAANAIEEAHVSWVLHNREKYPLARIGVICNQIERAQSIAQRLLSQGENTIVLHSAMTAEHRRINAQALEEALGPNGKSQNITLIGTQAVEASLDIDLDLLSSDLCPSTSLLQRAGRVWRRHDPTRKNRIPEINNLPLRIVAPENYKTGAHLPYFAAELELTKRWISQFETIEMPKHAQELVDTASVTFNKLIDEENDLIDELSDQFSAQSLKKNAALTRINSLSSLIQNPTSLSEIIHLTGTRETSQLQDREERSTRYIETETIQLILGDSTGQIPGAWTEGIEALSKIQSNERSQTKRALRASIPVSKSRLPQTVLDKTEPISEKGLLSQYLFLNAQPFYDSNIGFIIHKD
>NC_009342.1|WP_158300331.1|803667_804243_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MNDPVFRHRAIMGLFGAIDSKKPREHGGILFRLDQIPGQPPFFLVQSRISPQTQSYETRELPLPDYKEGDIVQFTTALNGVRRKTTENSGKRQTKVSPVPLFKPEDTDQFPFDTWVKEKMSSLFSDTEIVNHRRSVLKSKIHPNLTIQVDDVDGIATICDPEALRTVMSNGIGREKSYGCGLVSVRLIKGI
>NC_009342.1|WP_144063648.1|804554_806126_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTINVLQDIELLKMSNGRMSVREALLSAHRDGIMFSLNTPGYEFSTQLRFMAGIVAVALKHTKKKSSDLRKTGFEIEAIDQALKDLSPGAFLMDDEMPFMARPALPPKNEKDASRKLGRGANPIKKLSPSMIATEAEDYWDLLIDVPQELEVEEAAFQLMVFHYMSMAGNNKYDGDKCQMGAPALRWVGADYTLTEVSWLDSNLLDTLLPMIPKNWVAGKALPAWADRKGEYSRDEDGQMHPLWKATWSSNAAVAFWEDKKLTGVRTGGIPSEWFVAEMGTTTKSWKGWWDLRNQADPFFLYRGNEKGEMKLQRLDLGRDATDLAVEWAAENKIDTFIDRSNSVTGPGIEARIVFMRHQLAGTASSPNIRASEIFVPDQELWAFDLDEDVRSRVMDDAEVVRNVHRVVTGPFRRRNSNESGTALVLDDLEKRRSDVSAEYWRNVTDSVKRILSYERDLLDQDTQDEDNSGLSKEISDAIYRAAMEAFDEVTSAYSAWQPNKAAYVRSRISRRVRQTLDKANGS
>NC_009342.1|WP_044026946.1|806143_806785_+|hypothetical-protein
MVHDEQTKKTEDWVVHLSRILAERESVKKSGQRSPVWIRKRANLRRGVAAGTEHYAYAEVLPYVNAGRARQTVLLRLFSLVADFDDIAMYEKGDRGKSRSLGQWAYLVSSTTGSTENERFELDPSKPDKIAQRLAFIHALDVEEAILAIRRIMMIATSGDQTAPAIDYYQLFRTFLFWGDGFTPASIETRSRILRDYYVGVSVPSEASTTISK
>NC_009342.1|WP_011896830.1|806802_807885_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRHLTINIISTIPYSNLNRDDSGTPKRVKQGGVLRGLHSSQSIKRGIRARYEEASGDISVRSGLLTEEVIRGALQLNSALDEKPVTKMAKDLIGKLTKKEASEGESARSIWLSQEELDTASQYIVDALSSNEEEAGPSGDFINQGKTGSMAITAFGRMFANAPQFNIEAALSVSPAVSTHAISIDTDYFSTGDDLREAQQETGATFLGIAQFTNGVFYRSVTIDKVQLKETWTAFGNPDSKANLEALVRSVVYGQPRGKENSTAPYTLPALVLAEEQRYRVAYDFERPVLAQGAGGFLESTVQELASQRKLSREFDPENFGPVESLAGTYGNLAEEFEGLEVSSLQGLIDDVVEWILDD
>NC_009342.1|WP_044026948.1|807877_808594_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTSSVYIRLAGPLQSWAGPVVSGNFVRTGMIPTSTALRGLIAGALGARRGQWPEWLEKVHFTVREDRSPIINDDFQTVGSREDEFHFRSRLAIMQGMKASSVKQLAFKPSSGDSVTTVIRRTYLSDAEFLVRITAENYTEEIDQALASPAFSTYLGKKAFAPAFPFYLGVGNASLLNLIPVVGRNEQKHAVVKIHELSMGDGFPSSQERVPQVDSRAEWFDALKDLKLVRRRTLLAGE
>NC_009342.1|WP_011896831.1|808713_809505_+|hypothetical-protein
MGGTGVRKLWGDGTPVSLPDLSELSRAERIDALRSRMSTMGAAVPKFEPSVEESAEQKQDSLAEKQDIVAVPSAFSDLFPGGGLPRRAVTQLVEQPLVVVDFLAHITAQGGHAAVIGWKDLAYAGVIDSGGVCENIIAIPNPGTEPLNVAAVLCEGLDVVVYKGPEISLSPTRARPLLGKLRQGTAALVMVGTKVASPALTVDAEITDYVGIGAGSGRIRGVEMQVRAVSKTHGVRSGKVMISRPQDAALFEPEQPTTLRAVP
>NC_009342.1|WP_044026949.1|809513_811094_+|DNA-polymerase
MALWFPDWPVQAVHLDEDAPAHNKPVAIAAHYRIQVCGVAARKRGVRRGMKVRQAQAVCPELEVVDADADRDARMFEGIVASLGEVASSVEVLRPGLVAVDAGAAARYYGSEDIAAQMLIDAALRQGIDVFAGVADEITTAVIAARANGGTVVKREASRSFLQQQPLGVLAAEEALGCEAEVVRALADLGMRTLGELAELPVEAVATRFGNAGLRCHNIARARHDRKVAPPITHADWEVSHVPEEPILRVDAASFVARNLASRLHQLLSKGGVVCQLLKVTADFSTGDTVSRIWRTGEPLTEQATADRVRWQLDGWLTARGAHSDDPNEHDGITALWLIPLECVPPDMASGGLWDTGRSQQHVAKQVIERVQSSLGVDAVLQPVPAGGRGVEERIHFVPYGEKRDAIRNPAGSWPGKIPGPLPARLGGGINHPASQVTMIDTEGQRIYVTAEALLSSSPYALSWGPTPYLITAWAGPWPVDDRWWEKTGTKYARLQVVGRAVSEERQLSAWLLMWKDNKWRIEATY

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Crispr_ID: NC_009342_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009342_5

3113324-3113420

Orphan

Consensus_repeat	Method
AAACCAAACCAGGTGACCGAAAATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009342_5

>merge|NC_009342|5|3113324-3113420|CRISPRCasFinder
AAACCAAACCAGGTGACCGAAAATCTTCCGCCGATCAGTTTTCGGTCATATAGAACGGTTATCCCCTCTGGAAACCAAACCAGGTGACCGAAATTCT

>NC_009342|5|5|3113324-3113420|CRISPRCasFinder
AAACCAAACCAGGTGACCGAAAATCT	TCCGCCGATCAGTTTTCGGTCATATAGAACGGTTATCCCCTCTGG
AAACCAAACCAGGTGACCGAAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009342.1\|WP_044027373.1\|3114541_3115303_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176524
NC_009342.1\|WP_011898045.1\|3111425_3111755_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_009342.1\|WP_011898054.1\|3125496_3127275_+\|alpha/beta-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226849
NC_009342.1\|WP_144063661.1\|3105790_3106228_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|214947
NC_009342.1\|WP_003857765.1\|3124323_3125268_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NC_009342.1\|WP_011898042.1\|3107347_3108607_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NC_009342.1\|WP_011898041.1\|3106347_3107085_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|377981
NC_009342.1\|WP_044027371.1\|3104790_3105471_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378789
NC_009342.1\|WP_011898052.1\|3118891_3120301_+\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
NC_009342.1\|WP_011898050.1\|3117210_3117927_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NC_009342.1\|WP_011898046.1\|3111935_3113216_+\|DUF3500-domain-containing-protein	unknown	unknown	gnl\|CDD\|378789
NC_009342.1\|WP_011898036.1\|3102287_3103169_+\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NC_009342.1\|WP_011898043.1\|3108857_3110186_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925
NC_009342.1\|WP_011898053.1\|3120314_3121814_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|185009
NC_009342.1\|WP_011898049.1\|3115703_3117095_+\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
NC_009342.1\|WP_003857768.1\|3122338_3124198_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|237804
NC_009342.1\|WP_011898051.1\|3117923_3118877_+\|asparaginase	unknown	unknown	gnl\|CDD\|377601
NC_009342.1\|WP_173328335.1\|3103213_3104476_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_009342.1\|WP_003862592.1\|3113643_3114558_-\|hypothetical-protein	unknown	unknown	unknown
NC_009342.1\|WP_011898044.1\|3110232_3111411_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|224090

Protein	Function_ID	Function_description	E-value
NC_009342.1\|WP_044027373.1\|3114541_3115303_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176524	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	1.32996e-82
NC_009342.1\|WP_011898045.1\|3111425_3111755_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	2.2797e-18
NC_009342.1\|WP_011898054.1\|3125496_3127275_+\|alpha/beta-hydrolase-family-protein	gnl\|CDD\|226849	COG4425, COG4425, Predicted membrane protein [Function unknown].	0
NC_009342.1\|WP_144063661.1\|3105790_3106228_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|214947	smart00974, T5orf172, This entry represents the putative helicase A859L.	1.59954e-14
NC_009342.1\|WP_003857765.1\|3124323_3125268_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NC_009342.1\|WP_011898042.1\|3107347_3108607_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	8.76655e-97
NC_009342.1\|WP_011898050.1\|3117210_3117927_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	6.11309e-52
NC_009342.1\|WP_044027371.1\|3104790_3105471_+\|hypothetical-protein	gnl\|CDD\|378789	pfam12006, DUF3500, Protein of unknown function (DUF3500). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.	6.47636e-19
NC_009342.1\|WP_011898052.1\|3118891_3120301_+\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
NC_009342.1\|WP_011898051.1\|3117923_3118877_+\|asparaginase	gnl\|CDD\|377601	pfam06089, Asparaginase_II, L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyzes the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source.	2.60982e-112
NC_009342.1\|WP_011898046.1\|3111935_3113216_+\|DUF3500-domain-containing-protein	gnl\|CDD\|378789	pfam12006, DUF3500, Protein of unknown function (DUF3500). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.	4.37937e-106
NC_009342.1\|WP_011898036.1\|3102287_3103169_+\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.1515e-66
NC_009342.1\|WP_011898043.1\|3108857_3110186_+\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.75543e-122
NC_009342.1\|WP_011898053.1\|3120314_3121814_+\|amino-acid-permease	gnl\|CDD\|185009	PRK15049, PRK15049, L-asparagine permease.	0
NC_009342.1\|WP_011898049.1\|3115703_3117095_+\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	7.11225e-120
NC_009342.1\|WP_003857768.1\|3122338_3124198_-\|pyruvate-kinase	gnl\|CDD\|237804	PRK14725, PRK14725, pyruvate kinase; Provisional.	0
NC_009342.1\|WP_173328335.1\|3103213_3104476_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.30548e-69
NC_009342.1\|WP_011898041.1\|3106347_3107085_-\|transcriptional-regulator	gnl\|CDD\|377981	pfam08348, PAS_6, YheO-like PAS domain. This family contains various hypothetical bacterial proteins that are similar to the E. coli protein YheO. Their function is unknown, but are likely to be involved in signalling based on the presence of this PAS domain.	2.64777e-30
NC_009342.1\|WP_011898044.1\|3110232_3111411_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	1.79272e-156

>NC_009342.1|WP_011898046.1|3111935_3113216_+|DUF3500-domain-containing-protein
MRLNKRLPAALSGLLLSTALLAGCSTSGTDETTTTTVSSAAASTTTSTSSDSSSSSSSDSSTTAETISNTAEAAQAFLATLSTEEQDAVLYDYDAEEKSTGWSNFPVTFVQRSGVNLTDLTEEQQAAALNVLKNLLNNDAYQMIEDIMASDQYLNDESNTTEDSLGQYYIAFFGDPSSDSDWSIQFGGHHIGINATFSDGAITFAPTHLGTQPSEWTNEDGETVAALSNMYETAFAFYDSLTEEQQAQLYQGEELDSMVCAPGSTCDYPTGTGLKGSDLTDEQKELLLDVIANWVGLADEETTETELDAIRETLDDTYINWSGATEYDTSTGDGIYFQISGPKVYIEFANQQGSAGADIDSVITAGWGHIHTIYRDPTNDYANSVTQEAASGMMGGGPGGNGGEMPSGDMPTGEMRSGTPSGAPSN
>NC_009342.1|WP_011898045.1|3111425_3111755_+|carboxymuconolactone-decarboxylase-family-protein
MSYHDHSDIEYLKKIGANSPDAFKAFAHFDEAALRGPNKEIPRNYTEMIALAVAFTTQCAYCIDIHTAAAKKEGVTTEELAEVALIAAALRAGGAMTHGALAMKLYDEN
>NC_009342.1|WP_011898044.1|3110232_3111411_+|pyridoxal-phosphate-dependent-aminotransferase
MFNTLSLEQLRQRGTLKWTTFDQDVLPLWVAETDFDTCPAVVESVQNAVNLQQFGYPSNSNKLADALTAWCATRYNWEINPAWVHDLPDVLKGIEVSINHFTVAGSAIILPTPAYMPFYDVLEVTGRKINQVPMIFEDGRYSFDLVAIEEAFANGAGGLIVCNPYNPLGATFTAEELQSLAQLAQKYEARIISDEIHAPLTLDEAHIPTASVSDTAAEVTITITATSKGWNTPGLKCAQLILHNERDEKTWKKINSLRSHGASTLGIAASIGAYEKGGEWLDTEIEYLRKNRQFLLDNLGQAIPGIGFNKPQATYLAWLDFSEVEGLNDQDPAAYLLEHARVALNPGLPFGPGGENHARLNFGTSQEILEEFLDRTRTAFSSSPTKNEFIYL
>NC_009342.1|WP_011898043.1|3108857_3110186_+|MFS-transporter
MTAITPQPQNVESGSSKGIREEKNFVPGIPMAQLRSGAIGNLIEWFDWNAYALLSVYFAAQFFPAGTSPLVALLGSFGIMAVGFIVRPLAGLAIGVIADRFGRKTAMLITVYGMGISSLMIALSPTYAQIGIFAPFILLIARIIQGICIGGEYAALTAFAMEMSPNGKRGLVAAILNIVANFGQILVVVIILAFSWSLPDDAMHTWGWRLVFIIGALLSLLGIWMRRDMKETIDVDTSRAKKESVFAAVKRYPRQTIQIIGLTAGFTAMVYAWGAYMPTYAATYKGFDPKYSIMSMGASFAVAMVSTYFAGKASDRFGRKPTMIIAGILLSVGTVPALTLLNDSVWTLIIIQSVGLSIIGMLQSSSMPVFAEMFPSDFRASGLGFPYALTVGLIGGTVPLVGTQLANMNLTSVFPWYLTALIVISTLFYIGMKETAFKPLPK
>NC_009342.1|WP_011898042.1|3107347_3108607_-|amidohydrolase-family-protein
MRTVYIADLILTGAPQESIRNGAVVVNEGKIEQICSVEEIQNLGDGVEIKEFGEGSTLLPGLIDTHVHLAFDGSADPVERVRSADELERLAIMLKSARELLSAGVTTARDLGAPDLLDVRVKKMIDSGLARGPRMLTVTAPLTVTGGHCWFFGGECEGVDEVRRRVRQARREGADAIKIMSTGGNMTEGTLPSEPQFTLEELIAIVEEAHKYGMKVAAHAHGAEGIRRSLLAGVDTLEHFSFTTADGSMVEDAELVEQTAEKGTYVCKTICSGWGHYISEAVPDDQMRTLMDRGVQVVAGTDAGIDNTPHVDYVYGLEGMAALGMTNDEVLYSATLKAAASIGIAEETGSIEEGKSADLIVVQGDPRDDLQVLRNLKAVVAKGEEYVPEFHSETTWNATVDAPKYVPELTVKEDVISGV
>NC_009342.1|WP_011898041.1|3106347_3107085_-|transcriptional-regulator
MNDFLPSSTLPLTAEQINIFLDQLVVPLSQVLSSPSEVVLHDLRNIPNTVRKISGDVTGREIGDPPTDRLLEYLASGITDHRVGYRSNLPDGRQLRSTTLVFKDLRGEPAAALCFNSDVSSWVTVRSMMDNLILGSSNNINRAVSAPESQKGISSRPVEEKDEYFPLDVEDLADHLIEGAIRKVGVPVEEMKKRHKVEVVQELEKRGFFLVKDSIDQIAHSLNVTRFTIYNYLNEITDTESVKAV
>NC_009342.1|WP_144063661.1|3105790_3106228_+|GIY-YIG-nuclease-family-protein
MNSEDVFEEDKETGHIYFLSSESDDPAVKGIPNLYKIGFSRGEVKKRISNAEKDPTYLMAPVKVMDDYKVYNAHPSKVEALIHRLFASARLDLTQIDAKGKDYDPSEWFMVPLEEVQKGIELIVSGDVIYYNYDRQQEKLVPAEN
>NC_009342.1|WP_044027371.1|3104790_3105471_+|hypothetical-protein
MTLLANSSEDPGSGSGGVRYSLGSLKVSEQAAANAVLKAVLNDTSYQEFADSSYLEISGTPSDDGTWGISFGGPSESASVEFSDGSISFSPVDMTVPATRLPQMGAFYETLTEEQLGMLETGLPVSTLDSSQQEMLLDLVSNSIGLADTETTATAISEIRATLSETYLFGTPDGLTLALSGPHVDFEVSHQGSTAKITYRDPSTDSLTAEDRVDTAGVAAAPPEIV
>NC_009342.1|WP_173328335.1|3103213_3104476_+|LCP-family-protein
MDSPGQGEIARDSQGRPILDRYGRPVRVRPQARQTPPAPRTPRTPPVNETRVYQPRQTPPRQTPPRQTPPRQMPPRQTPPRQVPPQQQYQQPGQIGQVRPQPPIIADSQVGGGRRRKAISFKPRGCLGSLAGLVAVVLVLAFVVALWADAKLNRVDATPATQVANTAGTNWLLVGSDSRQGLSDEDIERLGTGGDIGVGRTDTIMVLHMPRTGEPTLLSIPRDSYVNVPGWGMDKANAAFTVGGPELLTQTVEEATGLRIDHYAEIGMGGLANMVDAVGGVEMCPAEAMYDPLANLDIQAGCQEFDGAAALGYVRTRATALGDLDRVVRQREFFSALLSTATSPGTLLNPFRTFPMISNAVGTFTVGEGDHVWHLVRLALAMRSGIQTETVPIASFADYDVGNVAIWDEAGAEALFSSMR
>NC_009342.1|WP_011898036.1|3102287_3103169_+|class-C-sortase
MSKHQKVAKAGSAGRGSRITSLILLIVSLALLSYPVVATVLADYNNSENARRYAEEITESATPEMIQQLRSKAEHYNADLWATGHPVRQENPEDPAYQSYKEQLMTSDHSTTMARIQIPDVGIDLPIYHGTTDDVLYRGAGHMYNSDLPIGGESSTSVITAHTGMVNASMFDNLGKLEEGEPVYINVLGETLRYRMTGFQVVKPENYDAVTYEDGVDKLILITCTPYGINSDRLLVTAERDHSPIEEGEVPDGWRLQLSWWMKLDLAIIATIIAIALWSTIRRRKNLKAEISG
>NC_009342.1|WP_003862592.1|3113643_3114558_-|hypothetical-protein
MAKKTKKNEQLPEGMSRRQAKLAARAAERAALEREPRPFEGLAMESQLVALQEFIPSATAPITVAGTDRKITLCTVLPGAAAALVREEAFGGEAFVAMQQAIRSNNPSKDLAFALNWVINAKAGESLATATADGTQPELKSLLNDADTLEITTHQDFNWWLAENDNLSPEVAQHMQAANDSILPSHEVEADVPGAVWWVNPGGKAHIRWVRTENETALFNALARIAARGELNLGEETKFAGAFRTHGIVVPVWDLDPERPSTDYADVLVALNEKIVAELDNDAQLNADERRQLENIKSRQVTIR
>NC_009342.1|WP_044027373.1|3114541_3115303_-|glycerophosphodiester-phosphodiesterase
MKVIAHRGLSSRFPELTESAFRAALELPIHGIETDVRLTKCGEVVNIHDPIVDRVSNGRGRVSRLDLESLLSLNFGTKEAPEKVLTLNNLLDILEDYPDKHLYIETKHPMRYAIMLEEEVTKILKYRGLMEDPRIHIISFALPAISRMERLAPAIDRIHLRRSWERWGNPRDLRCGAPTGLGLSVERAKMDPRMIGAKGLPTYLFTVDKQKDMLWARDHGVDMLATNYPDRAAELLNAHPKPAMYANAHGKED
>NC_009342.1|WP_011898049.1|3115703_3117095_+|GntP-family-permease
MDTWEQTLGTGSLLGIAAGAIALILVLVIVFKLHAFLTLVLVSIATALVAGIPVTEVVDTLLSGFGGTLASVALLVGLGAMLGRLVETSGGAKSLADAMVRIFGEKRAPFALGVASLIMGFPIFFDAGLVVMLPVIFAVARRLNGSVLTFGIPAAGAFSVMHVFVPPHPGPIAASEFFGAQVGYVLIAGIIVALPTWYLTGYLLGKFLGRKFPLPVPDLLSGGAQEDDQPQNPASAVSIIAILLIPMLLIFGNTGTSMAVSAGVLDAESTVVKILGFLGETPVALLITVLIALFFLGNRRGISGSALEKTVEGALGPICSVVLITGAGGMFGGVLRTSGIGGALADSMSDLGLPVIAGCFIVAAVLRVAQGSATVALTTAAALMAPAVAAADFNEFQLAAIVISTAAGSVIASHVNDSGFWLVGRLMNADVPTTLKTWTVNQTCIAIVGFIMAYAMFGLASLA
>NC_009342.1|WP_011898050.1|3117210_3117927_+|FadR-family-transcriptional-regulator
MMFTMNLSDSWTPRQPVLSRTSAAEEVFNAIRQGIESGEIPLGSKLSSEAALAASFGVSRSVIREALRSSATLGLTKTETGRGTFVISASPTNDLVLGNFSSTDLYEARPHIEVPAAGLAATRRSKDDLQQLFNIIEQMEAEDDHVAWVELDTEFHAAIANASGNSVFAKIVGDIRESLARQSETVNVVSGRREPSDAEHRAIVEAIAAQDKDAAEAAMAFHLSAVQVAVDDIVSKQS
>NC_009342.1|WP_011898051.1|3117923_3118877_+|asparaginase
MIPAHAPLVGQTRGDHIESIHYGSAVLLDVDGNIETSIGDTEAVFYPRSALKPLFAVGMVRAGLKLNQEQLTLASASHSGSLEHQRIVLSTLHDAGLTESDLGNSVDLPYGKAEREAHLAAGGRPTRLAQNCSGKHAALLALCVLKGWGTENYLDPEHPISALLRETVEELCGTRVASTSIDGCGTPVYPLTLAALARGYARLAKAQPGSAEYQVKAAIVNYPELLAGVGRDVSALMRALPGAVAKDGFEGIQAVALPDGRALAVKISDGGDRARMPITATLLLNALEEVPDDLRALTHSNVEAGPAEERVGKLFAL
>NC_009342.1|WP_011898052.1|3118891_3120301_+|aspartate-ammonia-lyase
MTTTFSSTRTEHDLIGDAEVPAHVYWGVHTMRAAENFQITDQKLADNPFLIAALARVKQAAARANLQLGLLDQTRAEAIDQACDRVAAGEFNEQFILDPIQGGAGTSTNMNANEVIANVALEILGHEKGDYQHLHPNDHVNLSQSTNDAYPTAVKIATCFAARPLLDALTELEQACRSKAVEFRTVVKMGRTQLQDAVPMTVGQEFGGWAVTLREDHDRLEESLKLVTEINLGATAIGTGLNAPEGYAEAARKHLAELTALPLSTSPHLVEATSDVGAFVHLSGVLKRVAVKLSKICSDLRLLSSGPRAGLNDIQLPAVQSGSSIMPGKVNPVIPEVVNQIAYQVVGYDATVTMAAEGGQLQLNAFEPVIMHSIGLSMKHLANGCSTLARKCIAGITVDEDALRRQVEQSIGLVTALNPALGYTQSTMIAMEALHTGRGVAELVLERELLTEAELSELLRPERLANLAS
>NC_009342.1|WP_011898053.1|3120314_3121814_+|amino-acid-permease
MSTTQAKGTTASSASPASPADAAFDSALTAGDSDYHKGLSTRQVNMIAIGGAIGTGLFMGAGGRLAQAGPGIVISYAICGVLAFLILRALGELVMYRPTSGSFVSYAREFYGEKAAFATGWLYWLNWSMTAIVDITAAALYMNFFGRYVPWISAVPQWVWAMAALLLVLAMNLISVKVFGELEFWFALIKVVALSAFLVVGCYFVIFGTPIEGHEVGFSLIQDNGGILPSGILPVLVLMQGVVFAYASIELLGTAAGEVENPEKVMPKAINTVIFRIAIFYVGSLVLLSLLLPYTAYKAGESPFVTFFSAIGIPGMDVVMNLVVLTAAMSSLNAGLYSTGRILRSMSLNGSAPKFAGRISASGVPYGGIIITTVVAAIGVVLNALVPAQAFEIVLNFAAIGIIASWGMIVLCHIALVRKAERGELQRPSFRMPFAPYTSWIVLIALFLIVVLMAFDNPVGTWTVAGLLVIIPLLIAGWYACRGRINAIAAERAAASVTE
>NC_009342.1|WP_003857768.1|3122338_3124198_-|pyruvate-kinase
MNEFDQDILQEIKTELDELILELDEVTQTHSEAIGQVSPTHYVGARNLMHYAHLRTKDLRGLQQRLSSVGATRLTTTEPAVQARLKAARNVIGAFAGEGPLYPPSDVVDAFEDADEILDEHAEILLGEPLPDTPSCIMVTLPTEAATDIELVRGFAKSGMDLARINCAHDDETVWKQMIDNVHTVAEEVGREIRVSMDLAGPKVRTGEIAPGAEVGRARVTRDKTGKVLTPAKLWITAHGSEPVPAPESLPGRPALPIEVTPEWFDKLEIGSVINVPDTRGSRRAFTVTRVFDGAVLAEGPQKAYISNGTLLEHNYDRSRVYGIPAVVQRINLKVGDRLILTDEELTYDPSLGSGRTPRISCTLPQAVDAIKVGHRVLFDDGAIAAVCIDKASTTDGFNDVELEVTRARPQGVNLAAYKGINLPDSELPLPSLTEEDLQHLRFVVQYADIAAISFIRNVADVEYLLQALADIGDPAAVERLGLVLKIETIPGYEGLAQILLTGMRHENFGIMIARGDLAVELGFDRMAEVPQLIMALAEAAHVPTILATQVLENMAKNGLPSRAEITDAAMALRAECVMLNKGPHINDAIKVLTKMSRKLGASQRKSRLLLRKVKSWEE
>NC_009342.1|WP_003857765.1|3124323_3125268_-|L-lactate-dehydrogenase
MKETVGNKIVLIGAGDVGVAYAYALINQGMADHLAIIDIDEKKLEGNVMDLNHGVVWADSRTRVTKGTYADCEDAAMVVICAGAAQKPGETRLQLVDKNVKIMKSIVGDVMASGFDGIFLVASNPVDILTYAVWKFSGLEWNRVIGSGTVLDSARFRYMLGELYEVAPSSVHAYIIGEHGDTELPVLSSATIAGVSLSRMLDKDPELEGRLEKIFEDTRDAAYHIIDAKGSTSYGIGMGLARITRAILQNQDVAVPVSALLHGEYGEEDIYIGTPAVVNRRGIRRVVELEITDHEMERFKHSANTLREIQKQFF
>NC_009342.1|WP_011898054.1|3125496_3127275_+|alpha/beta-hydrolase-family-protein
MVSLPRLASLLTTRLATLKPALKPATHLASLGAQVIAELVPGIRMSPNRRRILPANMGAGFIGAEIAMWWALSPSLLPKPWWVTAANLAVLQAVGHAAATGIHSILPRTNRRVSRKIYNATHIATGAITLTTTVVGLIRHRTQIRLIGQKNFGPKETIAGISVGTLGYGALLITGELTQHSINEVKRLIERFLPPWISFIAAVSVITLTTVTLTDRVLLRRILHNSAIQAAHLNRMVFPGTEQPWEPERSGSPWSYEKWGAVGSQGRAVLSGGPRKDDIITVTRLSDTETHEPIRIFIGMVPGRSLSDQVDLVIHEMRRTGALRRDHIVINNSTGTGWITDWSAHTFEFLTGGNCVTISMQYSYLPSALSWYKDNDGPINAARMLIDAVLHELDQLPTGSRPKLFLAGESLGAYGLAEVWGDVEKLLGTADGVLFSGAPRFSDAMNALRTRRDASSSERLPVIDSGRHIRFAGEPEHLDMPATWQFPRMIVAQHASDPIVWWNAELFIRRPEWLKTPQQDHQDVFPRLRWMPFVTGWQVALDLLTSTSAPGGHGHNYHEEFIDYWAALLDREVTPELRHSIAYWIRANHIKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009342_4	4.13\|793716\|32\|NC_009342\|CRISPRCasFinder,CRT	793716-793747	32	NC_009343.1	40238-40269	0	1.0
NC_009342_4	4.65\|796888\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796888-796919	32	NC_009343.1	44340-44371	0	1.0
NC_009342_4	4.110\|799633\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799633-799664	32	NC_009342.1	2229617-2229648	0	1.0
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NC_009343.1	24497-24528	1	0.969
NC_009342_4	4.84\|798047\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798047-798078	32	NC_009343.1	28879-28910	1	0.969
NC_009342_4	4.97\|798840\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798840-798871	32	NC_009343.1	35825-35856	1	0.969
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_009343.1	34054-34085	2	0.938
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	NC_009343.1	24563-24594	2	0.938

1. spacer 4.13|793716|32|NC_009342|CRISPRCasFinder,CRT matches to position: 40238-40269, mismatch: 0, identity: 1.0

ttgaataatgttgcgtaatgtaacatcttgct	CRISPR spacer
ttgaataatgttgcgtaatgtaacatcttgct	Protospacer
********************************

2. spacer 4.65|796888|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to position: 44340-44371, mismatch: 0, identity: 1.0

ccacgaaatacagttcggacatgacaacccac	CRISPR spacer
ccacgaaatacagttcggacatgacaacccac	Protospacer
********************************

3. spacer 4.110|799633|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to position: 2229617-2229648, mismatch: 0, identity: 1.0

cgaaatccacgaaatcaaccgccttgattcct	CRISPR spacer
cgaaatccacgaaatcaaccgccttgattcct	Protospacer
********************************

4. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to position: 24497-24528, mismatch: 1, identity: 0.969

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
tcggtgcgccaggtgcgggcctcgatgacgtt	Protospacer
****************************.***

5. spacer 4.84|798047|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to position: 28879-28910, mismatch: 1, identity: 0.969

gctatgcgtttccctgacggcacctatttgga	CRISPR spacer
gccatgcgtttccctgacggcacctatttgga	Protospacer
**.*****************************

6. spacer 4.97|798840|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to position: 35825-35856, mismatch: 1, identity: 0.969

ccagaaaccagcacacaaggagaactcaccgt	CRISPR spacer
ccagaaaccagcacacaaggagaactcacagt	Protospacer
***************************** **

7. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to position: 34054-34085, mismatch: 2, identity: 0.938

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
catgctgcgcgacgacggaacggtgtgccctg	Protospacer
**** ************* *************

8. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to position: 24563-24594, mismatch: 2, identity: 0.938

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gttgagttcgccaccgaagcaggcgaccgtgt	Protospacer
**.**************************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009342_4	4.13\|793716\|32\|NC_009342\|CRISPRCasFinder,CRT	793716-793747	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	40238-40269	0	1.0
NC_009342_4	4.22\|794265\|32\|NC_009342\|CRISPRCasFinder,CRT	794265-794296	32	Y18058	Corynephage 304L int gene	628-659	0	1.0
NC_009342_4	4.44\|795607\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795607-795638	32	NZ_KU306397	Corynebacterium glutamicum strain DSM 1412 plasmid pBL90, complete sequence	30081-30112	0	1.0
NC_009342_4	4.65\|796888\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796888-796919	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	44340-44371	0	1.0
NC_009342_4	4.104\|799267\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799267-799298	32	KY250482	Corynebacterium phage phi16, complete genome	7276-7307	0	1.0
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	24497-24528	1	0.969
NC_009342_4	4.84\|798047\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798047-798078	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	28879-28910	1	0.969
NC_009342_4	4.97\|798840\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798840-798871	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	35825-35856	1	0.969
NC_009342_4	4.105\|799328\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799328-799359	32	KY250482	Corynebacterium phage phi16, complete genome	1714-1745	1	0.969
NC_009342_4	4.108\|799511\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799511-799542	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	35662-35693	1	0.969
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	34054-34085	2	0.938
NC_009342_4	4.59\|796522\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796522-796553	32	KY250482	Corynebacterium phage phi16, complete genome	15302-15333	2	0.938
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	24563-24594	2	0.938
NC_009342_4	4.45\|795668\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795668-795699	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	28736-28767	3	0.906
NC_009342_4	4.12\|793655\|32\|NC_009342\|CRISPRCasFinder,CRT	793655-793686	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	40637-40668	4	0.875
NC_009342_4	4.83\|797986\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797986-798017	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	23053-23084	5	0.844
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	811998-812029	5	0.844
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	26160-26191	5	0.844
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	26160-26191	5	0.844
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	26160-26191	5	0.844
NC_009342_4	4.22\|794265\|32\|NC_009342\|CRISPRCasFinder,CRT	794265-794296	32	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	82372-82403	6	0.812
NC_009342_4	4.75\|797498\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797498-797529	32	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	281600-281631	6	0.812
NC_009342_4	4.80\|797803\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797803-797834	32	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	153269-153300	6	0.812
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	4964-4995	6	0.812
NC_009342_4	4.4\|793167\|32\|NC_009342\|CRISPRCasFinder,CRT	793167-793198	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	419027-419058	7	0.781
NC_009342_4	4.15\|793838\|32\|NC_009342\|CRISPRCasFinder,CRT	793838-793869	32	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	227073-227104	7	0.781
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	367190-367221	7	0.781
NC_009342_4	4.22\|794265\|32\|NC_009342\|CRISPRCasFinder,CRT	794265-794296	32	NZ_CP054601	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed2, complete sequence	6461-6492	7	0.781
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	NC_023605	Vibrio phage PVA1, complete genome	24429-24460	7	0.781
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NC_010481	Acinetobacter baumannii plasmid pABIR, complete sequence	28500-28531	7	0.781
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_CP040718	Aeromonas veronii strain HX3 plasmid pHX3, complete sequence	98065-98096	7	0.781
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_CP022176	Aeromonas salmonicida strain S44 plasmid pS44-1, complete sequence	126631-126662	7	0.781
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_CP013966	Aeromonas hydrophila strain D4 plasmid pAhD4-1, complete sequence	25537-25568	7	0.781
NC_009342_4	4.34\|794997\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794997-795028	32	NZ_CP010683	Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence	46036-46067	7	0.781
NC_009342_4	4.34\|794997\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794997-795028	32	NZ_CP010718	Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence	46036-46067	7	0.781
NC_009342_4	4.34\|794997\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794997-795028	32	NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	186389-186420	7	0.781
NC_009342_4	4.35\|795058\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795058-795089	32	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	341572-341603	7	0.781
NC_009342_4	4.35\|795058\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795058-795089	32	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	588920-588951	7	0.781
NC_009342_4	4.35\|795058\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795058-795089	32	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	498371-498402	7	0.781
NC_009342_4	4.45\|795668\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795668-795699	32	MT764845	Ruegeria phage Tedan, complete genome	56429-56460	7	0.781
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	9970-10001	7	0.781
NC_009342_4	4.51\|796034\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796034-796065	32	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	95115-95146	7	0.781
NC_009342_4	4.52\|796095\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796095-796126	32	NC_015855	Pseudomonas putida plasmid pGRT1, complete sequence	84143-84174	7	0.781
NC_009342_4	4.54\|796217\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796217-796248	32	MK279875	Arthrobacter phage Riverdale, complete genome	2156-2187	7	0.781
NC_009342_4	4.54\|796217\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796217-796248	32	MK279876	Arthrobacter phage Rozby, complete genome	2156-2187	7	0.781
NC_009342_4	4.54\|796217\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796217-796248	32	KX621005	Arthrobacter phage Vallejo, complete genome	2156-2187	7	0.781
NC_009342_4	4.57\|796400\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796400-796431	32	NC_009343	Corynebacterium glutamicum R plasmid pCGR1, complete sequence	34966-34997	7	0.781
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1457101-1457132	7	0.781
NC_009342_4	4.72\|797315\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797315-797346	32	NC_015059	Granulicella tundricola MP5ACTX9 plasmid pACIX904, complete sequence	25010-25041	7	0.781
NC_009342_4	4.75\|797498\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797498-797529	32	NZ_CP011248	Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence	98160-98191	7	0.781
NC_009342_4	4.75\|797498\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797498-797529	32	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	97921-97952	7	0.781
NC_009342_4	4.75\|797498\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797498-797529	32	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	98005-98036	7	0.781
NC_009342_4	4.86\|798169\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798169-798200	32	NZ_CP040821	Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence	75729-75760	7	0.781
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1416584-1416615	7	0.781
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	396673-396704	7	0.781
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	MT855965	Microcystis phage vB_MaeS-yong1, complete genome	190-221	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	708862-708893	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1798949-1798980	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	708902-708933	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1479577-1479608	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	364597-364628	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	708713-708744	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	708691-708722	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1465137-1465168	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	401305-401336	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	MN310379	Klebsiella quasipneumoniae strain A2508 plasmid pA2508-NR, complete sequence	74698-74729	7	0.781
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP016455	Sphingobium sp. RAC03 plasmid pBSY17_3, complete sequence	48209-48240	7	0.781
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5839115-5839146	7	0.781
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	181050-181081	7	0.781
NC_009342_4	4.98\|798901\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798901-798932	32	NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	497251-497282	7	0.781
NC_009342_4	4.99\|798962\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798962-798993	32	KT339177	Lactococcus phage GE1, complete genome	21245-21276	7	0.781
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	563460-563491	7	0.781
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	188761-188792	7	0.781
NC_009342_4	4.1\|792984\|32\|NC_009342\|CRISPRCasFinder,CRT	792984-793015	32	MF919542	Gordonia phage Patio, complete genome	48182-48213	8	0.75
NC_009342_4	4.15\|793838\|32\|NC_009342\|CRISPRCasFinder,CRT	793838-793869	32	MK415405	Phage FAKO05_000032F, complete genome	70791-70822	8	0.75
NC_009342_4	4.18\|794021\|32\|NC_009342\|CRISPRCasFinder,CRT	794021-794052	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	512145-512176	8	0.75
NC_009342_4	4.20\|794143\|32\|NC_009342\|CRISPRCasFinder,CRT	794143-794174	32	MH019215	Streptomyces phage Yara, complete genome	65530-65561	8	0.75
NC_009342_4	4.21\|794204\|32\|NC_009342\|CRISPRCasFinder,CRT	794204-794235	32	MH019215	Streptomyces phage Yara, complete genome	65530-65561	8	0.75
NC_009342_4	4.25\|794448\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794448-794479	32	MG945616	UNVERIFIED: Microviridae sp. isolate 5104-1801, complete genome	4679-4710	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP028557	Acinetobacter sp. WCHA45 plasmid p2_010045, complete sequence	5591-5622	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP028558	Acinetobacter sp. WCHA45 plasmid p3_010045, complete sequence	4596-4627	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	CP033539	Acinetobacter pittii strain 2012N21-164 plasmid p2012N21-164-4, complete sequence	2107-2138	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_LT984691	Acinetobacter baumannii isolate K50 plasmid II, complete sequence	7808-7839	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP050387	Acinetobacter baumannii strain VB82 plasmid pVB82_2, complete sequence	5804-5835	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP051871	Acinetobacter baumannii strain Ab-D10a-a plasmid pAb-D10a-a_2, complete sequence	3749-3780	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP023032	Acinetobacter baumannii strain 7847 plasmid pAba7847a, complete sequence	11719-11750	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP026417	Acinetobacter sp. ACNIH2 plasmid pACI-c6b4, complete sequence	3197-3228	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP026418	Acinetobacter sp. ACNIH2 plasmid pKPC-8dee, complete sequence	16272-16303	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP051877	Acinetobacter baumannii strain Ab-B004d-c plasmid pAb-B004d-c_2, complete sequence	3016-3047	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP015365	Acinetobacter baumannii strain 3207 plasmid pAba3207a, complete sequence	11832-11863	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP040260	Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence	140386-140417	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP040261	Acinetobacter baumannii strain P7774 plasmid unnamed2, complete sequence	13144-13175	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP022284	Acinetobacter baumannii strain 7804 plasmid pAba7804a, complete sequence	11265-11296	8	0.75
NC_009342_4	4.27\|794570\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794570-794601	32	NZ_CP033244	Acinetobacter baumannii strain 7835 plasmid pAba7835a, complete sequence	5844-5875	8	0.75
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_KT033469	Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence	127497-127528	8	0.75
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_KT033470	Aeromonas salmonicida subsp. salmonicida strain JF2267 plasmid pAsa4c, complete sequence	104698-104729	8	0.75
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NC_009349	Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence	104012-104043	8	0.75
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	488428-488459	8	0.75
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	714313-714344	8	0.75
NC_009342_4	4.31\|794814\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794814-794845	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1502743-1502774	8	0.75
NC_009342_4	4.33\|794936\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794936-794967	32	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	138925-138956	8	0.75
NC_009342_4	4.43\|795546\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795546-795577	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1939567-1939598	8	0.75
NC_009342_4	4.43\|795546\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795546-795577	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	48546-48577	8	0.75
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	420617-420648	8	0.75
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	228499-228530	8	0.75
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	281954-281985	8	0.75
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	518418-518449	8	0.75
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	518551-518582	8	0.75
NC_009342_4	4.54\|796217\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796217-796248	32	NC_015724	Cupriavidus necator N-1 plasmid pBB2, complete sequence	234274-234305	8	0.75
NC_009342_4	4.70\|797193\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797193-797224	32	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	272507-272538	8	0.75
NC_009342_4	4.77\|797620\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797620-797651	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	159404-159435	8	0.75
NC_009342_4	4.77\|797620\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797620-797651	32	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	673700-673731	8	0.75
NC_009342_4	4.77\|797620\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797620-797651	32	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	708976-709007	8	0.75
NC_009342_4	4.77\|797620\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797620-797651	32	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	709122-709153	8	0.75
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	MN062710	Mycobacterium phage Ajay, complete genome	31391-31422	8	0.75
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NC_021297	Mycobacterium phage PattyP, complete genome	31537-31568	8	0.75
NC_009342_4	4.88\|798291\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798291-798322	32	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	380366-380397	8	0.75
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	789998-790029	8	0.75
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	317244-317275	8	0.75
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NC_023722	Rhodococcus phage ReqiPine5, complete genome	58931-58962	8	0.75
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP026654	Streptomyces dengpaensis strain XZHG99 plasmid unnamed2, complete sequence	21834-21865	8	0.75
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NC_048801	Microbacterium phage Araxxi, complete genome	25405-25436	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	NZ_KU355873	Escherichia coli strain FAM22871 plasmid pFAM22871_1, complete sequence	105059-105090	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	NZ_KP056256	Escherichia coli strain YDC637 plasmid pYDC637, complete sequence	165748-165779	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1162542-1162573	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	NZ_CP027381	Escherichia coli strain 2013C-3250 plasmid unnamed1	15076-15107	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	NZ_CP027385	Escherichia coli strain 2013C-3250 plasmid unnamed5, complete sequence	721-752	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	CP022610	Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence	8509-8540	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	CP022610	Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence	136313-136344	8	0.75
NC_009342_4	4.94\|798657\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798657-798688	32	NZ_CP026934	Escherichia coli strain CFS3273 plasmid pCFS3273-2, complete sequence	11457-11488	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MH834601	Mycobacterium phage BoostSeason, complete genome	39373-39404	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023180	Brevibacterium phage AGM5, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023191	Brevibacterium phage AGM16, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MT024866	Mycobacterium phage Willsammy, complete genome	14452-14483	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023185	Brevibacterium phage AGM10, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023176	Brevibacterium phage AGM1, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023181	Brevibacterium phage AGM6, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023179	Brevibacterium phage AGM4, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023178	Brevibacterium phage AGM3, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023189	Brevibacterium phage AGM14, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023183	Brevibacterium phage AGM8, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	KT347313	Mycobacterium phage Brusacoram, complete genome	14560-14591	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023184	Brevibacterium phage AGM9, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023190	Brevibacterium phage AGM15, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023186	Brevibacterium phage AGM11, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023188	Brevibacterium phage AGM13, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023177	Brevibacterium phage AGM2, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN585977	Mycobacterium phage Atcoo, complete genome	14435-14466	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MG198785	Mycobacterium phage Thespis, complete genome	14560-14591	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023187	Brevibacterium phage AGM12, complete genome	8052-8083	8	0.75
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	MN023182	Brevibacterium phage AGM7, complete genome	8052-8083	8	0.75
NC_009342_4	4.97\|798840\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798840-798871	32	NC_007801	Jannaschia sp. CCS1 plasmid p1, complete sequence	46850-46881	8	0.75
NC_009342_4	4.112\|792990\|32\|NC_009342\|PILER-CR	792990-793021	32	MF919542	Gordonia phage Patio, complete genome	48182-48213	8	0.75
NC_009342_4	4.6\|793289\|32\|NC_009342\|CRISPRCasFinder,CRT	793289-793320	32	MN694053	Marine virus AFVG_250M559, complete genome	1721-1752	9	0.719
NC_009342_4	4.8\|793411\|32\|NC_009342\|CRISPRCasFinder,CRT	793411-793442	32	MK448998	Streptococcus phage Javan636, complete genome	7740-7771	9	0.719
NC_009342_4	4.12\|793655\|32\|NC_009342\|CRISPRCasFinder,CRT	793655-793686	32	AP014684	Pseudomonas phage PS-1 DNA, complete sequence	3382-3413	9	0.719
NC_009342_4	4.14\|793777\|32\|NC_009342\|CRISPRCasFinder,CRT	793777-793808	32	KX911187	Rathayibacter phage NCPPB3778, complete genome	31442-31473	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	524306-524337	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1208904-1208935	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	746725-746756	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1179397-1179428	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	513082-513113	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1275127-1275158	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	106931-106962	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	517987-518018	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	510730-510761	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	781842-781873	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1177634-1177665	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	866414-866445	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	771080-771111	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	897594-897625	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	396763-396794	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	419206-419237	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1299523-1299554	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	496932-496963	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	663680-663711	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	534519-534550	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1349643-1349674	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1121943-1121974	9	0.719
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1208910-1208941	9	0.719
NC_009342_4	4.18\|794021\|32\|NC_009342\|CRISPRCasFinder,CRT	794021-794052	32	MT118295	Pseudomonas phage Epa18, complete genome	70198-70229	9	0.719
NC_009342_4	4.20\|794143\|32\|NC_009342\|CRISPRCasFinder,CRT	794143-794174	32	MT498037	Streptomyces phage Dryad, complete genome	65975-66006	9	0.719
NC_009342_4	4.21\|794204\|32\|NC_009342\|CRISPRCasFinder,CRT	794204-794235	32	MT498037	Streptomyces phage Dryad, complete genome	65975-66006	9	0.719
NC_009342_4	4.22\|794265\|32\|NC_009342\|CRISPRCasFinder,CRT	794265-794296	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3368497-3368528	9	0.719
NC_009342_4	4.23\|794326\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794326-794357	32	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	308168-308199	9	0.719
NC_009342_4	4.23\|794326\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794326-794357	32	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	308252-308283	9	0.719
NC_009342_4	4.25\|794448\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794448-794479	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1019624-1019655	9	0.719
NC_009342_4	4.25\|794448\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794448-794479	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1112751-1112782	9	0.719
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	21075-21106	9	0.719
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	AJ011581	Bacteriophage PS119 lysis genes 13, 19, 15, and packaging gene 3, complete cds	101-132	9	0.719
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	MT774487	Salmonella phage MG40, complete genome	36831-36862	9	0.719
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	MH370387	Salmonella phage S149, complete genome	20926-20957	9	0.719
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	MG407615	Salmonella phage Bp96115, partial genome	10845-10876	9	0.719
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	NC_005841	Enterobacteria phage ST104 DNA, complete genome	20927-20958	9	0.719
NC_009342_4	4.30\|794753\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794753-794784	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	706249-706280	9	0.719
NC_009342_4	4.30\|794753\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794753-794784	32	NZ_CP015733	Arthrobacter sp. U41 plasmid unnamed1, complete sequence	2563-2594	9	0.719
NC_009342_4	4.33\|794936\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794936-794967	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	229979-230010	9	0.719
NC_009342_4	4.34\|794997\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794997-795028	32	NZ_CP017294	Pseudomonas aeruginosa strain PA83 plasmid unnamed1, complete sequence	50465-50496	9	0.719
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_CP012254	Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence	40597-40628	9	0.719
NC_009342_4	4.46\|795729\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795729-795760	32	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	81804-81835	9	0.719
NC_009342_4	4.48\|795851\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795851-795882	32	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	287098-287129	9	0.719
NC_009342_4	4.48\|795851\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795851-795882	32	NZ_CP032313	Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence	155778-155809	9	0.719
NC_009342_4	4.49\|795912\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795912-795943	32	MN033733	Leviviridae sp. isolate H1_Bulk_29_scaffold_504 RNA-dependent RNA polymerase (H1Bulk29504_000001), hypothetical protein (H1Bulk29504_000002), hypothetical protein (H1Bulk29504_000003), and hypothetical protein (H1Bulk29504_000004) genes, complete cds	1427-1458	9	0.719
NC_009342_4	4.50\|795973\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795973-796004	32	NZ_CP010243	Escherichia coli strain S56 plasmid A, complete sequence	72052-72083	9	0.719
NC_009342_4	4.51\|796034\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796034-796065	32	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	275965-275996	9	0.719
NC_009342_4	4.51\|796034\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796034-796065	32	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	129625-129656	9	0.719
NC_009342_4	4.51\|796034\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796034-796065	32	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	28145-28176	9	0.719
NC_009342_4	4.61\|796644\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796644-796675	32	NZ_CP015747	Shinella sp. HZN7 plasmid pShin-11, complete sequence	3226-3257	9	0.719
NC_009342_4	4.62\|796705\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796705-796736	32	NZ_CP015747	Shinella sp. HZN7 plasmid pShin-11, complete sequence	3226-3257	9	0.719
NC_009342_4	4.66\|796949\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796949-796980	32	NZ_CP014802	Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence	141538-141569	9	0.719
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MK433577	Klebsiella phage ST512-KPC3phi13.6, complete genome	18885-18916	9	0.719
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MK433581	Klebsiella phage ST258-KPC3phi16.1, complete genome	18885-18916	9	0.719
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MK416011	Klebsiella phage ST437-OXA245phi4.1, complete genome	18885-18916	9	0.719
NC_009342_4	4.74\|797437\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797437-797468	32	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	261498-261529	9	0.719
NC_009342_4	4.75\|797498\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797498-797529	32	NC_009129	Corynebacterium sp. L2-79-05 plasmid pLEW279b, complete sequence	11786-11817	9	0.719
NC_009342_4	4.77\|797620\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797620-797651	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	838524-838555	9	0.719
NC_009342_4	4.85\|798108\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798108-798139	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	109699-109730	9	0.719
NC_009342_4	4.85\|798108\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798108-798139	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	319292-319323	9	0.719
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5019247-5019278	9	0.719
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4151446-4151477	9	0.719
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	343848-343879	9	0.719
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	32057-32088	9	0.719
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP037915	Sphingomonas sp. AAP5 plasmid p150, complete sequence	5952-5983	9	0.719
NC_009342_4	4.95\|798718\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798718-798749	32	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	416212-416243	9	0.719
NC_009342_4	4.96\|798779\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798779-798810	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	264209-264240	9	0.719
NC_009342_4	4.100\|799023\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799023-799054	32	MT639646	Microbacterium phage Rasputia, complete genome	66900-66931	9	0.719
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	146358-146389	9	0.719
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	580247-580278	9	0.719
NC_009342_4	4.101\|799084\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	799084-799115	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	57268-57299	9	0.719
NC_009342_4	4.6\|793289\|32\|NC_009342\|CRISPRCasFinder,CRT	793289-793320	32	MN224564	Streptomyces phage Araceli, complete genome	11239-11270	10	0.688
NC_009342_4	4.6\|793289\|32\|NC_009342\|CRISPRCasFinder,CRT	793289-793320	32	MH229863	Streptomyces phage JackieB, complete genome	11104-11135	10	0.688
NC_009342_4	4.6\|793289\|32\|NC_009342\|CRISPRCasFinder,CRT	793289-793320	32	MH229862	Streptomyces phage Henoccus, complete genome	11249-11280	10	0.688
NC_009342_4	4.9\|793472\|32\|NC_009342\|CRISPRCasFinder,CRT	793472-793503	32	MH045568	Microbacterium phage Kieran, complete genome	34841-34872	10	0.688
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	609257-609288	10	0.688
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	142330-142361	10	0.688
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1887086-1887117	10	0.688
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	537903-537934	10	0.688
NC_009342_4	4.17\|793960\|32\|NC_009342\|CRISPRCasFinder,CRT	793960-793991	32	KY963371	Bacillus phage Carmel_SA, complete genome	22316-22347	10	0.688
NC_009342_4	4.20\|794143\|32\|NC_009342\|CRISPRCasFinder,CRT	794143-794174	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3046681-3046712	10	0.688
NC_009342_4	4.20\|794143\|32\|NC_009342\|CRISPRCasFinder,CRT	794143-794174	32	MN693844	Marine virus AFVG_250M676, complete genome	40172-40203	10	0.688
NC_009342_4	4.21\|794204\|32\|NC_009342\|CRISPRCasFinder,CRT	794204-794235	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3046681-3046712	10	0.688
NC_009342_4	4.21\|794204\|32\|NC_009342\|CRISPRCasFinder,CRT	794204-794235	32	MN693844	Marine virus AFVG_250M676, complete genome	40172-40203	10	0.688
NC_009342_4	4.22\|794265\|32\|NC_009342\|CRISPRCasFinder,CRT	794265-794296	32	MN036093	Leviviridae sp. isolate H4_Rhizo_44_scaffold_297_e_1965 sequence	843-874	10	0.688
NC_009342_4	4.23\|794326\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794326-794357	32	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	772938-772969	10	0.688
NC_009342_4	4.26\|794509\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794509-794540	32	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	74422-74453	10	0.688
NC_009342_4	4.28\|794631\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794631-794662	32	MG049919	Shigella phage vB_SflS-ISF001, complete genome	44419-44450	10	0.688
NC_009342_4	4.30\|794753\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794753-794784	32	NZ_CP018234	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence	95288-95319	10	0.688
NC_009342_4	4.30\|794753\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794753-794784	32	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1620132-1620163	10	0.688
NC_009342_4	4.30\|794753\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	794753-794784	32	NZ_CP023066	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence	5347-5378	10	0.688
NC_009342_4	4.49\|795912\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795912-795943	32	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	457278-457309	10	0.688
NC_009342_4	4.49\|795912\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	795912-795943	32	NZ_CP030129	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence	214109-214140	10	0.688
NC_009342_4	4.51\|796034\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796034-796065	32	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	451567-451598	10	0.688
NC_009342_4	4.60\|796583\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796583-796614	32	NZ_CP006765	Corynebacterium doosanense CAU 212 = DSM 45436 strain CAU 212(T) plasmid pCdoos1, complete sequence	4862-4893	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	521468-521499	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	KY130461	Mycobacterium phage Taptic, complete genome	57556-57587	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MH001446	Mycobacterium phage Megabear, complete genome	57162-57193	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	AP018462	Mycobacterium phage D12 DNA, complete genome	57874-57905	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MK494131	Mycobacterium phage GodPhather, complete genome	57571-57602	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MK494114	Mycobacterium phage Argie, complete genome	58130-58161	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MK494132	Mycobacterium phage Cepens, complete genome	57239-57270	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	AP018463	Mycobacterium phage PR DNA, complete genome	57851-57882	10	0.688
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	MH001450	Mycobacterium phage Jeon, complete genome	57064-57095	10	0.688
NC_009342_4	4.79\|797742\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797742-797773	32	MN694346	Marine virus AFVG_250M477, complete genome	30627-30658	10	0.688
NC_009342_4	4.80\|797803\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797803-797834	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	92196-92227	10	0.688
NC_009342_4	4.80\|797803\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797803-797834	32	CP054934	Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence	121504-121535	10	0.688
NC_009342_4	4.86\|798169\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798169-798200	32	MH019216	Streptomyces phage Wentworth, complete genome	15618-15649	10	0.688
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	422715-422746	10	0.688
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	91257-91288	10	0.688
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NZ_CP051544	Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence	12518-12549	10	0.688
NC_009342_4	4.87\|798230\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798230-798261	32	NZ_CP011048	Cronobacter sakazakii strain ATCC 29544 plasmid CSK29544_1p, complete sequence	8571-8602	10	0.688
NC_009342_4	4.88\|798291\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798291-798322	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	500885-500916	10	0.688
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	173001-173032	10	0.688
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NC_015951	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence	69792-69823	10	0.688
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	MN813693	Mycobacterium phage Imvubu, complete genome	53502-53533	10	0.688
NC_009342_4	4.5\|793228\|32\|NC_009342\|CRISPRCasFinder,CRT	793228-793259	32	NZ_CP033789	Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence	80052-80083	11	0.656
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1814729-1814760	11	0.656
NC_009342_4	4.16\|793899\|32\|NC_009342\|CRISPRCasFinder,CRT	793899-793930	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	187859-187890	11	0.656
NC_009342_4	4.52\|796095\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796095-796126	32	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	188313-188344	11	0.656
NC_009342_4	4.59\|796522\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796522-796553	32	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	124153-124184	11	0.656
NC_009342_4	4.59\|796522\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	796522-796553	32	NC_020542	Sphingomonas sp. MM-1 plasmid pISP0, complete sequence	131336-131367	11	0.656
NC_009342_4	4.67\|797010\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797010-797041	32	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	277958-277989	11	0.656
NC_009342_4	4.77\|797620\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797620-797651	32	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	111140-111171	11	0.656
NC_009342_4	4.77\|797620\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	797620-797651	32	CP041260	Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence	105582-105613	11	0.656
NC_009342_4	4.88\|798291\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798291-798322	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	500887-500918	11	0.656
NC_009342_4	4.92\|798535\|32\|NC_009342\|CRISPRCasFinder,CRT,PILER-CR	798535-798566	32	NZ_LR134449	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 7, complete sequence	45256-45287	11	0.656

1. spacer 4.13|793716|32|NC_009342|CRISPRCasFinder,CRT matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgaataatgttgcgtaatgtaacatcttgct	CRISPR spacer
ttgaataatgttgcgtaatgtaacatcttgct	Protospacer
********************************

2. spacer 4.22|794265|32|NC_009342|CRISPRCasFinder,CRT matches to Y18058 (Corynephage 304L int gene) position: , mismatch: 0, identity: 1.0

gcgatgtgctggatctgctcttcggtcaaaat	CRISPR spacer
gcgatgtgctggatctgctcttcggtcaaaat	Protospacer
********************************

3. spacer 4.44|795607|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU306397 (Corynebacterium glutamicum strain DSM 1412 plasmid pBL90, complete sequence) position: , mismatch: 0, identity: 1.0

cgttcagtcgtgcgatacggcggtcataaatg	CRISPR spacer
cgttcagtcgtgcgatacggcggtcataaatg	Protospacer
********************************

4. spacer 4.65|796888|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 0, identity: 1.0

ccacgaaatacagttcggacatgacaacccac	CRISPR spacer
ccacgaaatacagttcggacatgacaacccac	Protospacer
********************************

5. spacer 4.104|799267|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to KY250482 (Corynebacterium phage phi16, complete genome) position: , mismatch: 0, identity: 1.0

cttaggcgaatgctgctttgagatccgcaaga	CRISPR spacer
cttaggcgaatgctgctttgagatccgcaaga	Protospacer
********************************

6. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 1, identity: 0.969

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
tcggtgcgccaggtgcgggcctcgatgacgtt	Protospacer
****************************.***

7. spacer 4.84|798047|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 1, identity: 0.969

gctatgcgtttccctgacggcacctatttgga	CRISPR spacer
gccatgcgtttccctgacggcacctatttgga	Protospacer
**.*****************************

8. spacer 4.97|798840|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 1, identity: 0.969

ccagaaaccagcacacaaggagaactcaccgt	CRISPR spacer
ccagaaaccagcacacaaggagaactcacagt	Protospacer
***************************** **

9. spacer 4.105|799328|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to KY250482 (Corynebacterium phage phi16, complete genome) position: , mismatch: 1, identity: 0.969

aattcgcgggcgataagaatttcgcctttacc	CRISPR spacer
aattcgcgggcgataagaatttcgcctttgcc	Protospacer
*****************************.**

10. spacer 4.108|799511|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 1, identity: 0.969

cgtagcccatgactgcgatgtagtggtagacc	CRISPR spacer
cgtagcccatgactgcgatgtagtggtagacg	Protospacer
*******************************

11. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 2, identity: 0.938

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
catgctgcgcgacgacggaacggtgtgccctg	Protospacer
**** ************* *************

12. spacer 4.59|796522|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to KY250482 (Corynebacterium phage phi16, complete genome) position: , mismatch: 2, identity: 0.938

cttctcttcagctttcgcaatggactcagcgc	CRISPR spacer
cttctcttccgccttcgcaatggactcagcgc	Protospacer
********* **.*******************

13. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 2, identity: 0.938

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gttgagttcgccaccgaagcaggcgaccgtgt	Protospacer
**.**************************.**

14. spacer 4.45|795668|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 3, identity: 0.906

ggctagatccattcgattcccgcatgtccaca	CRISPR spacer
gtctagatccgttcgattcccgcatgtccacc	Protospacer
* ********.********************

15. spacer 4.12|793655|32|NC_009342|CRISPRCasFinder,CRT matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 4, identity: 0.875

cacaaaccagcgccccaaataacacggcctga	CRISPR spacer
cacaaaccatcgccccaaataacacgggcgca	Protospacer
********* ***************** *  *

16. spacer 4.83|797986|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 5, identity: 0.844

aaccaaatcttgccgaacctgttggttatagc	CRISPR spacer
aaccaaatcttgccgaaccttttggtcacatt	Protospacer
******************** *****.*.* .

17. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 5, identity: 0.844

ggcttgtggacgagtttgtcttccaggccgta	CRISPR spacer
ggcttgaggacgagcttgtcttccagcacgga	Protospacer
****** *******.***********  ** *

18. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 5, identity: 0.844

ggcttgtggacgagtttgtcttccaggccgta	CRISPR spacer
ggcttgaggacgagcttgtcttccagcacgga	Protospacer
****** *******.***********  ** *

19. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 5, identity: 0.844

ggcttgtggacgagtttgtcttccaggccgta	CRISPR spacer
ggcttgaggacgagcttgtcttccagcacgga	Protospacer
****** *******.***********  ** *

20. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 5, identity: 0.844

ggcttgtggacgagtttgtcttccaggccgta	CRISPR spacer
ggcttgaggacgagcttgtcttccagcacgga	Protospacer
****** *******.***********  ** *

21. spacer 4.22|794265|32|NC_009342|CRISPRCasFinder,CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 6, identity: 0.812

gcgatgtgctggatctgctcttcggtcaaaat	CRISPR spacer
gcgatgtgccgcatctgctcttcggcccggat	Protospacer
*********.* *************.* ..**

22. spacer 4.75|797498|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 6, identity: 0.812

atatcatgtgccagggcaagctgctccggggt	CRISPR spacer
acctgacgtgccagggcctgctgctccggggt	Protospacer
*. * *.**********  *************

23. spacer 4.80|797803|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 6, identity: 0.812

ttgttcgtcggtgagttcgccgg-gttcaggtg	CRISPR spacer
ttgttcggcggtgagtttgccggtcttctcgt-	Protospacer
******* *********.*****  ***  **

24. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 6, identity: 0.812

gtcgagt---tcgccaccgaagcaggcgaccgcgt	CRISPR spacer
---gaattcgtcgccaccgaagcgggcgaccgtgt	Protospacer
   **.*   *************.********.**

25. spacer 4.4|793167|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

tctgcgtcgtgtagcgggaacggtgaggaaac	CRISPR spacer
tctgcgtcgtatagcggaaacggtgatcgaga	Protospacer
**********.******.********  .*.

26. spacer 4.15|793838|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 7, identity: 0.781

gttaatgcacttgattttctctacttttggta	CRISPR spacer
ctgaagtaacttgattttctttacttctggta	Protospacer
 * **   ************.*****.*****

27. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 7, identity: 0.781

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
cgtggtgctcgacgacggcacggtgctgcccg	Protospacer
*.**.*** ****************.  **.*

28. spacer 4.22|794265|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP054601 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtgctggatctgctcttcggtcaaaat	CRISPR spacer
tcgatgtgctggacctgctcgtcggtgtaggt	Protospacer
 ************.****** *****  *..*

29. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_023605 (Vibrio phage PVA1, complete genome) position: , mismatch: 7, identity: 0.781

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
taacaacagccccgcaattacgcggggttttc	Protospacer
** .   *********** ********.****

30. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_010481 (Acinetobacter baumannii plasmid pABIR, complete sequence) position: , mismatch: 7, identity: 0.781

acgataca-ttgaggccaatgatgagattgcac	CRISPR spacer
-tggtatgtttgaggccaatgatcagattgaac	Protospacer
 .*.**.. ************** ****** **

31. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040718 (Aeromonas veronii strain HX3 plasmid pHX3, complete sequence) position: , mismatch: 7, identity: 0.781

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
cgatccccatcgcctggcaaaaatcttcctga	Protospacer
**... .***********.** **********

32. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022176 (Aeromonas salmonicida strain S44 plasmid pS44-1, complete sequence) position: , mismatch: 7, identity: 0.781

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
cgatccccatcgcctggcaaaaatcttcctga	Protospacer
**... .***********.** **********

33. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013966 (Aeromonas hydrophila strain D4 plasmid pAhD4-1, complete sequence) position: , mismatch: 7, identity: 0.781

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
cgatccccatcgcctggcaaaaatcttcctga	Protospacer
**... .***********.** **********

34. spacer 4.34|794997|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010683 (Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence) position: , mismatch: 7, identity: 0.781

atgtggtgtttcagcaggtgggtcgcgatggt	CRISPR spacer
aagtcccgattcagcaggttggacgcgatggt	Protospacer
* **  .* ********** ** *********

35. spacer 4.34|794997|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010718 (Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence) position: , mismatch: 7, identity: 0.781

atgtggtgtttcagcaggtgggtcgcgatggt	CRISPR spacer
aagtcccgattcagcaggttggacgcgatggt	Protospacer
* **  .* ********** ** *********

36. spacer 4.34|794997|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 7, identity: 0.781

atgtggtgtttcagcaggtgggtcgcgatggt	CRISPR spacer
acgccgtcttccagcaggtgggtcgcgaagct	Protospacer
*.*. ** **.***************** * *

37. spacer 4.35|795058|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ctgggtggatcatgagccgtgaggtg--gccagt	CRISPR spacer
catggtggatcatcagccgcgaggtgctgccg--	Protospacer
*  ********** *****.******  ***.

38. spacer 4.35|795058|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

ctgggtggatcatgagccgtgaggtg--gccagt	CRISPR spacer
catggtggatcatcagccgcgaggtgctgccg--	Protospacer
*  ********** *****.******  ***.

39. spacer 4.35|795058|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 7, identity: 0.781

ctgggtggatcatgagccgtgaggtg--gccagt	CRISPR spacer
cctggtggatcatcagccgcgaggtgctgccg--	Protospacer
*. ********** *****.******  ***.

40. spacer 4.45|795668|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MT764845 (Ruegeria phage Tedan, complete genome) position: , mismatch: 7, identity: 0.781

ggcta--gatccattcgattcccgcatgtccaca	CRISPR spacer
--ccagcgtcccatccgattcccgcatgaccaca	Protospacer
  *.*  * .****.************* *****

41. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
tcggtgcgccaggtccggacctcgcccatgcg	Protospacer
************** ***.***** . ***.

42. spacer 4.51|796034|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 7, identity: 0.781

ggctacctcgacgatgagggcaagcaagccat	CRISPR spacer
ggctaccgcgacggtgagggcaatctcgtcac	Protospacer
******* *****.********* *  *.**.

43. spacer 4.52|796095|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_015855 (Pseudomonas putida plasmid pGRT1, complete sequence) position: , mismatch: 7, identity: 0.781

ccgaaacgccaaccacagtgcgggtggattga	CRISPR spacer
cggcaacgccgaccactgtgcgggtggtgtgc	Protospacer
* * ******.***** **********  **

44. spacer 4.54|796217|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK279875 (Arthrobacter phage Riverdale, complete genome) position: , mismatch: 7, identity: 0.781

attcatggggataccggatggagggatgtcac	CRISPR spacer
atgtatggggacaccgggtggagggatatttc	Protospacer
** .*******.*****.*********.*. *

45. spacer 4.54|796217|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK279876 (Arthrobacter phage Rozby, complete genome) position: , mismatch: 7, identity: 0.781

attcatggggataccggatggagggatgtcac	CRISPR spacer
atgtatggggacaccgggtggagggatatttc	Protospacer
** .*******.*****.*********.*. *

46. spacer 4.54|796217|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to KX621005 (Arthrobacter phage Vallejo, complete genome) position: , mismatch: 7, identity: 0.781

attcatggggataccggatggagggatgtcac	CRISPR spacer
atgtatggggacaccgggtggagggatatttc	Protospacer
** .*******.*****.*********.*. *

47. spacer 4.57|796400|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009343 (Corynebacterium glutamicum R plasmid pCGR1, complete sequence) position: , mismatch: 7, identity: 0.781

-gtgccccgttgatgtatgcccacgctgttgag	CRISPR spacer
tgtg-gccgttgatgtttgcccacgcggtgaac	Protospacer
 ***  ********** ********* ** .*

48. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.781

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
agatcggccggaaggtctgccagcgcctgctc	Protospacer
 **** ***** *************..* **

49. spacer 4.72|797315|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_015059 (Granulicella tundricola MP5ACTX9 plasmid pACIX904, complete sequence) position: , mismatch: 7, identity: 0.781

tcctttttaagcactttgagtccccttagcca	CRISPR spacer
tcctttctaagcattttgagtcctcggtgcct	Protospacer
******.******.*********.*   ***

50. spacer 4.75|797498|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 7, identity: 0.781

-atatcatgtgccagggcaagctgctccggggt	CRISPR spacer
tagagc-catgccagggcaagctgtgccggggt	Protospacer
 * * * ..***************. *******

51. spacer 4.75|797498|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 7, identity: 0.781

-atatcatgtgccagggcaagctgctccggggt	CRISPR spacer
tagagc-catgccagggcaagctgtgccggggt	Protospacer
 * * * ..***************. *******

52. spacer 4.75|797498|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 7, identity: 0.781

-atatcatgtgccagggcaagctgctccggggt	CRISPR spacer
tagagc-catgccagggcaagctgtgccggggt	Protospacer
 * * * ..***************. *******

53. spacer 4.86|798169|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040821 (Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence) position: , mismatch: 7, identity: 0.781

aggattacgcgacggcggtggaggaacatgcc	CRISPR spacer
aggattacgcgaaggcggtggaggcggaaaac	Protospacer
************ *********** . * . *

54. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
cggcggtggccaggtcctcggcggtgatgccg	Protospacer
 .*.********* ******.*******  **

55. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
cggcggtggccaggtcctcggcggtgatgccg	Protospacer
 .*.********* ******.*******  **

56. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MT855965 (Microcystis phage vB_MaeS-yong1, complete genome) position: , mismatch: 7, identity: 0.781

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
ccgtggtggccagtccgtcgacggtgttgggg	Protospacer
  ************.* ********* * * *

57. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

58. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

59. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

60. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

61. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

62. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

63. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

64. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgcgcgacgtgggtggtgccggtggt	Protospacer
 . ****** ****** ************  *

65. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 7, identity: 0.781

attgc-gcgctcgacgtcggtggtgccggtttt	CRISPR spacer
-tggcggcggtcgacgtcggtggtggcggtgcg	Protospacer
 * ** *** *************** **** .

66. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN310379 (Klebsiella quasipneumoniae strain A2508 plasmid pA2508-NR, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgc----tcgacgtcggtggtgccggtttt	CRISPR spacer
----cgcactttgtccacgtcggtggtgccggcttt	Protospacer
    ***.*    ** ****************.***

67. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016455 (Sphingobium sp. RAC03 plasmid pBSY17_3, complete sequence) position: , mismatch: 7, identity: 0.781

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
attgcgcgctcgacttcggcggtacggatctc	Protospacer
************** ****.***.* *.*.*.

68. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gtcgagttggccaccgaagcgggcgccgatgc	Protospacer
******** ***********.**** * ..*.

69. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 7, identity: 0.781

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgatcccgccgccgatgcaggcgaccgcgc	Protospacer
*.*** ..****.**** *************.

70. spacer 4.98|798901|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 7, identity: 0.781

gaaagcgctacgtctttctcctcaaccaggtc	CRISPR spacer
gatggatctacgtctttttcctcaatcaggta	Protospacer
** .*  **********.*******.*****

71. spacer 4.99|798962|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to KT339177 (Lactococcus phage GE1, complete genome) position: , mismatch: 7, identity: 0.781

gccctctgctaaaacttccactcaatctccta	CRISPR spacer
tcgccgtgctaaaactgctactcaatctcctt	Protospacer
 * *. ********** *.************

72. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggcttgtggacgagtttgtcttccaggccgta---	CRISPR spacer
ggctggtggacgagtatgtcttc---gccctgctc	Protospacer
**** ********** *******   *** *.

73. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcttgtggacgagtttgtcttccaggccgta---	CRISPR spacer
ggctggtggacgagtatgtcttc---gccctgttg	Protospacer
**** ********** *******   *** *.

74. spacer 4.1|792984|32|NC_009342|CRISPRCasFinder,CRT matches to MF919542 (Gordonia phage Patio, complete genome) position: , mismatch: 8, identity: 0.75

-tcctggcgggattctgcacgcgtcgcaccgtc	CRISPR spacer
cgtccagc-ggatgctgcacgcggcgcaccgtg	Protospacer
  .*..** **** ********* ********

75. spacer 4.15|793838|32|NC_009342|CRISPRCasFinder,CRT matches to MK415405 (Phage FAKO05_000032F, complete genome) position: , mismatch: 8, identity: 0.75

gttaatgcacttgattttctctacttttggta	CRISPR spacer
actaaggcccttgattttctctacttgcagga	Protospacer
..*** ** ***************** ..* *

76. spacer 4.18|794021|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 8, identity: 0.75

caacccccacgggtcttctgctcacgaagctc	CRISPR spacer
aatccgacacgtgtcgtctgctcacgaagcat	Protospacer
 * **  **** *** ************** .

77. spacer 4.20|794143|32|NC_009342|CRISPRCasFinder,CRT matches to MH019215 (Streptomyces phage Yara, complete genome) position: , mismatch: 8, identity: 0.75

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
ggcattcatggactcctccaacgccatcaacg	Protospacer
*...  * ******** *********.*****

78. spacer 4.21|794204|32|NC_009342|CRISPRCasFinder,CRT matches to MH019215 (Streptomyces phage Yara, complete genome) position: , mismatch: 8, identity: 0.75

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
ggcattcatggactcctccaacgccatcaacg	Protospacer
*...  * ******** *********.*****

79. spacer 4.25|794448|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MG945616 (UNVERIFIED: Microviridae sp. isolate 5104-1801, complete genome) position: , mismatch: 8, identity: 0.75

cctgcggaagaaaccatccggcacattattca	CRISPR spacer
catgcggatgaaaccatgcggcacaaggtcct	Protospacer
* ****** ******** *******  .*.*

80. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028557 (Acinetobacter sp. WCHA45 plasmid p2_010045, complete sequence) position: , mismatch: 8, identity: 0.75

acgataca-ttgaggccaatgatgagattgcac	CRISPR spacer
-tggcatgtttgaggccaatgatcagattgaac	Protospacer
 .*..*.. ************** ****** **

81. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028558 (Acinetobacter sp. WCHA45 plasmid p3_010045, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

82. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to CP033539 (Acinetobacter pittii strain 2012N21-164 plasmid p2012N21-164-4, complete sequence) position: , mismatch: 8, identity: 0.75

acgataca-ttgaggccaatgatgagattgcac	CRISPR spacer
-tggcatgtttgaggccaatgatcagattgaac	Protospacer
 .*..*.. ************** ****** **

83. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT984691 (Acinetobacter baumannii isolate K50 plasmid II, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

84. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050387 (Acinetobacter baumannii strain VB82 plasmid pVB82_2, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

85. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051871 (Acinetobacter baumannii strain Ab-D10a-a plasmid pAb-D10a-a_2, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

86. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023032 (Acinetobacter baumannii strain 7847 plasmid pAba7847a, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

87. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026417 (Acinetobacter sp. ACNIH2 plasmid pACI-c6b4, complete sequence) position: , mismatch: 8, identity: 0.75

acgataca-ttgaggccaatgatgagattgcac	CRISPR spacer
-tggcatgtttgaggccaatgatcagattgaac	Protospacer
 .*..*.. ************** ****** **

88. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026418 (Acinetobacter sp. ACNIH2 plasmid pKPC-8dee, complete sequence) position: , mismatch: 8, identity: 0.75

acgataca-ttgaggccaatgatgagattgcac	CRISPR spacer
-tggcatgtttgaggccaatgatcagattgaac	Protospacer
 .*..*.. ************** ****** **

89. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051877 (Acinetobacter baumannii strain Ab-B004d-c plasmid pAb-B004d-c_2, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

90. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015365 (Acinetobacter baumannii strain 3207 plasmid pAba3207a, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

91. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040260 (Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

92. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040261 (Acinetobacter baumannii strain P7774 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

93. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022284 (Acinetobacter baumannii strain 7804 plasmid pAba7804a, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

94. spacer 4.27|794570|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033244 (Acinetobacter baumannii strain 7835 plasmid pAba7835a, complete sequence) position: , mismatch: 8, identity: 0.75

acgatacattgaggccaatgatgagattgcac	CRISPR spacer
aggcatgtttgcggccaatgatgagattgaac	Protospacer
* *     *** ***************** **

95. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT033469 (Aeromonas salmonicida subsp. salmonicida strain 01-B522 plasmid pAsa4b, complete sequence) position: , mismatch: 8, identity: 0.75

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
caatccccatcgcctggcaaaaatcttcctga	Protospacer
*.... .***********.** **********

96. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT033470 (Aeromonas salmonicida subsp. salmonicida strain JF2267 plasmid pAsa4c, complete sequence) position: , mismatch: 8, identity: 0.75

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
caatccccatcgcctggcaaaaatcttcctga	Protospacer
*.... .***********.** **********

97. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009349 (Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete sequence) position: , mismatch: 8, identity: 0.75

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
caatccccatcgcctggcaaaaatcttcctga	Protospacer
*.... .***********.** **********

98. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 8, identity: 0.75

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
cctcgatcatggcctggcgaatttcttcgggt	Protospacer
*  * ***** *********** *****  *

99. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.75

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
cgcagatcatcgcctggcgcatttcttcgagc	Protospacer
**   ************** ** *****  *

100. spacer 4.31|794814|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.75

cggctatcatcgcctggcgaatatcttcctga	CRISPR spacer
cgcagatcatcgcctggcgcatttcttcgagc	Protospacer
**   ************** ** *****  *

101. spacer 4.33|794936|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 8, identity: 0.75

caaaccctggccaaggaagcccaggtatctgc	CRISPR spacer
gaagccctagccaaggaagcccagaaatgggt	Protospacer
 **.****.***************. **  *.

102. spacer 4.43|795546|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtggggtcgcggaggaagccttctttggc	CRISPR spacer
atggaggggtcgcggaggacgccttccatctc	Protospacer
 .** ************** ******. *  *

103. spacer 4.43|795546|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ccggtggggtcgcggaggaagccttctttggc	CRISPR spacer
ccggtggggtcgccgaggacgccgttgggggt	Protospacer
************* ***** *** *.   **.

104. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
ggcgcgcgccaggtgccggccgcgatgatgcc	Protospacer
   *.*********** **** ********..

105. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
ctgatgcgccagatgcgggcctcgatgctcga	Protospacer
..*.********.************** *

106. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 8, identity: 0.75

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
ttggtgcgccaggtgcggttctcgaccggctt	Protospacer
*.**************** .*****. .  **

107. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 8, identity: 0.75

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
ttggtgcgccaggtgcggttctcgaccggctt	Protospacer
*.**************** .*****. .  **

108. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 8, identity: 0.75

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
ttggtgcgccaggtgcggttctcgaccggctt	Protospacer
*.**************** .*****. .  **

109. spacer 4.54|796217|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_015724 (Cupriavidus necator N-1 plasmid pBB2, complete sequence) position: , mismatch: 8, identity: 0.75

attcatggggataccggatggagggatgtcac	CRISPR spacer
attcatggcgataccggctggagcaacgcggc	Protospacer
******** ******** ***** .*.*. .*

110. spacer 4.70|797193|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 8, identity: 0.75

gttaaggtgatggacgcgattgtggatgcaat	CRISPR spacer
gaaacggtgatggacacgattgcggatgcggc	Protospacer
*  * **********.******.******...

111. spacer 4.77|797620|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaccggtgccatcgcagcctgcttcaaccc	CRISPR spacer
gcagccggtgccttggcagcctgcttcatctc	Protospacer
 . .******** * ************* *.*

112. spacer 4.77|797620|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaccggtgccatcgcagcctgcttcaaccc	CRISPR spacer
tttgccggtgccttcgcagccttcttcttcgt	Protospacer
**..******** ********* ****  * .

113. spacer 4.77|797620|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaccggtgccatcgcagcctgcttcaaccc	CRISPR spacer
tttgccggtgccttcgcagccttcttcttcgt	Protospacer
**..******** ********* ****  * .

114. spacer 4.77|797620|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.75

ttcaccggtgccatcgcagcctgcttcaaccc	CRISPR spacer
tttgccggtgccttcgcagccttcttcttcgt	Protospacer
**..******** ********* ****  * .

115. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN062710 (Mycobacterium phage Ajay, complete genome) position: , mismatch: 8, identity: 0.75

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
tgatcgtggccagttgctcgacggtgatgtct	Protospacer
 ..* ********** ************  *

116. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_021297 (Mycobacterium phage PattyP, complete genome) position: , mismatch: 8, identity: 0.75

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
tgatcgtggccagttgctcgacggtgatgtct	Protospacer
 ..* ********** ************  *

117. spacer 4.88|798291|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tgaacgccacctgaattccggtggcgattttc	CRISPR spacer
ttttcgccacctgtattccggtggcgaaaagc	Protospacer
*   ********* *************    *

118. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
gcggcgcggtggacgtcggtggtgccggtcag	Protospacer
.. ***** * ******************.

119. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.75

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
gcggcgcggtggacgtcggtggtgccggtcag	Protospacer
.. ***** * ******************.

120. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_023722 (Rhodococcus phage ReqiPine5, complete genome) position: , mismatch: 8, identity: 0.75

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgctcgtcgtcggtggtgccagcgtc	Protospacer
 . ********* *************.*. *.

121. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026654 (Streptomyces dengpaensis strain XZHG99 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

attgcgcgctcgacgtcggtggtg----ccggtttt	CRISPR spacer
ggtgcgcgctacacgtcggtggtgcgcaccgg----	Protospacer
. ********  ************    ****

122. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_048801 (Microbacterium phage Araxxi, complete genome) position: , mismatch: 8, identity: 0.75

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
atctcgcgctcgatgtcgctggtgccgaggtc	Protospacer
**. *********.**** ********.  *.

123. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU355873 (Escherichia coli strain FAM22871 plasmid pFAM22871_1, complete sequence) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact	CRISPR spacer
actgatgacacaccggtaaaggtactgtcacc	Protospacer
** * .  ** *****.**************.

124. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP056256 (Escherichia coli strain YDC637 plasmid pYDC637, complete sequence) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact	CRISPR spacer
actgatgacacaccggtaaaggtactgtcacc	Protospacer
** * .  ** *****.**************.

125. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact-	CRISPR spacer
acggcctccaaaccggcaaaggt-ccgcggttc	Protospacer
**.***.**************** *.*. ..*

126. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027381 (Escherichia coli strain 2013C-3250 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact	CRISPR spacer
actgatgacacaccggtaaaggtactgtcacc	Protospacer
** * .  ** *****.**************.

127. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027385 (Escherichia coli strain 2013C-3250 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact	CRISPR spacer
actgatgacacaccggtaaaggtactgtcacc	Protospacer
** * .  ** *****.**************.

128. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact	CRISPR spacer
actgatgacacaccggtaaaggtactgtcacc	Protospacer
** * .  ** *****.**************.

129. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact	CRISPR spacer
actgatgacacaccggtaaaggtactgtcacc	Protospacer
** * .  ** *****.**************.

130. spacer 4.94|798657|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026934 (Escherichia coli strain CFS3273 plasmid pCFS3273-2, complete sequence) position: , mismatch: 8, identity: 0.75

acagcccccaaaccggcaaaggtactgtcact	CRISPR spacer
actgatgacacaccggtaaaggtactgtcacc	Protospacer
** * .  ** *****.**************.

131. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MH834601 (Mycobacterium phage BoostSeason, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gaaacgagcgccaccgaagcaggcgaccccga	Protospacer
*  . *  ******************** **

132. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023180 (Brevibacterium phage AGM5, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

133. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023191 (Brevibacterium phage AGM16, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

134. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MT024866 (Mycobacterium phage Willsammy, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
accgagttcgccaccgaatcgggcgtctggtt	Protospacer
..**************** *.**** *.*  *

135. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023185 (Brevibacterium phage AGM10, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

136. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023176 (Brevibacterium phage AGM1, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

137. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023181 (Brevibacterium phage AGM6, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

138. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023179 (Brevibacterium phage AGM4, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

139. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023178 (Brevibacterium phage AGM3, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

140. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023189 (Brevibacterium phage AGM14, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

141. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023183 (Brevibacterium phage AGM8, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

142. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to KT347313 (Mycobacterium phage Brusacoram, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
accgagttcgccaccgaatcgggcgtctggtt	Protospacer
..**************** *.**** *.*  *

143. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023184 (Brevibacterium phage AGM9, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

144. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023190 (Brevibacterium phage AGM15, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

145. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023186 (Brevibacterium phage AGM11, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

146. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023188 (Brevibacterium phage AGM13, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

147. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023177 (Brevibacterium phage AGM2, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

148. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN585977 (Mycobacterium phage Atcoo, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
accgagttcgccaccgaatcgggcgtctggtt	Protospacer
..**************** *.**** *.*  *

149. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MG198785 (Mycobacterium phage Thespis, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
accgagttcgccaccgaatcgggcgtctggtt	Protospacer
..**************** *.**** *.*  *

150. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023187 (Brevibacterium phage AGM12, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

151. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN023182 (Brevibacterium phage AGM7, complete genome) position: , mismatch: 8, identity: 0.75

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gccgttcgcgccaccgaagtaggcgatcgcgg	Protospacer
*.**  . ***********.******.****

152. spacer 4.97|798840|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_007801 (Jannaschia sp. CCS1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ccagaaaccagcacacaaggagaactcaccgt	CRISPR spacer
gcgcgaaccagcacacagggaaaactcaccca	Protospacer
 *. .************.***.********

153. spacer 4.112|792990|32|NC_009342|PILER-CR matches to MF919542 (Gordonia phage Patio, complete genome) position: , mismatch: 8, identity: 0.75

-tcctggcgggattctgcacgcgtcgcaccgtc	CRISPR spacer
cgtccagc-ggatgctgcacgcggcgcaccgtg	Protospacer
  .*..** **** ********* ********

154. spacer 4.6|793289|32|NC_009342|CRISPRCasFinder,CRT matches to MN694053 (Marine virus AFVG_250M559, complete genome) position: , mismatch: 9, identity: 0.719

ctttctgatccgacttgaccatgtaggaacca	CRISPR spacer
tgtgctgatccgagatgaccatgtaggagatg	Protospacer
. * *********  *************. ..

155. spacer 4.8|793411|32|NC_009342|CRISPRCasFinder,CRT matches to MK448998 (Streptococcus phage Javan636, complete genome) position: , mismatch: 9, identity: 0.719

ctcaggcagctattgaggagctggggttgagc--	CRISPR spacer
gtcaggcagctattgaggcgc--aggctaaagaa	Protospacer
 ***************** **  .**.*.*.

156. spacer 4.12|793655|32|NC_009342|CRISPRCasFinder,CRT matches to AP014684 (Pseudomonas phage PS-1 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

cacaaaccagcgccccaaataacacggcctga	CRISPR spacer
cacacagcagcgccccaaataacgcctttcgg	Protospacer
**** * ****************.*  ...*.

157. spacer 4.14|793777|32|NC_009342|CRISPRCasFinder,CRT matches to KX911187 (Rathayibacter phage NCPPB3778, complete genome) position: , mismatch: 9, identity: 0.719

cgccccaagcatcaaactggttgccgtactca	CRISPR spacer
ccgttttaccatcaaagtggtagccgtactca	Protospacer
*  ... * ******* **** **********

158. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

159. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

160. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
catcatgcgcgaggacggcacggttatcatcc	Protospacer
*** ******** ***********   * ..

161. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

162. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

163. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

164. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

165. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

166. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

167. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

168. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

169. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

170. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

171. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

172. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

173. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

174. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

175. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

176. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

177. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

178. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

179. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

180. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.719

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gatgatccgcgacgacggcacgctggatcagc	Protospacer
 ***** *************** ** ..*

181. spacer 4.18|794021|32|NC_009342|CRISPRCasFinder,CRT matches to MT118295 (Pseudomonas phage Epa18, complete genome) position: , mismatch: 9, identity: 0.719

caacccccacgggtcttctgctcacgaagctc	CRISPR spacer
aagcccccacggctcttcagctcacgggggct	Protospacer
 *.********* ***** *******..* ..

182. spacer 4.20|794143|32|NC_009342|CRISPRCasFinder,CRT matches to MT498037 (Streptomyces phage Dryad, complete genome) position: , mismatch: 9, identity: 0.719

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
cagcttcatggactccagcaacgccatcaacc	Protospacer
 *    * ********* ********.****

183. spacer 4.21|794204|32|NC_009342|CRISPRCasFinder,CRT matches to MT498037 (Streptomyces phage Dryad, complete genome) position: , mismatch: 9, identity: 0.719

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
cagcttcatggactccagcaacgccatcaacc	Protospacer
 *    * ********* ********.****

184. spacer 4.22|794265|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

gcgatgtgctggatctgctcttcggtcaaaat	CRISPR spacer
ccgatgtgctggatctgcgcgtcgtcccgacc	Protospacer
 ***************** * *** .* .* .

185. spacer 4.23|794326|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 9, identity: 0.719

gctcctcggtgatgatgtcgaatccgaaaagt	CRISPR spacer
ctccatcggtgtcgatgtcgaatccgaaagag	Protospacer
 ..* ****** .****************..

186. spacer 4.23|794326|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 9, identity: 0.719

gctcctcggtgatgatgtcgaatccgaaaagt	CRISPR spacer
ctccatcggtgtcgatgtcgaatccgaaagag	Protospacer
 ..* ****** .****************..

187. spacer 4.25|794448|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

cctgcggaagaaaccatccggcacattattca	CRISPR spacer
gctgcggaagaaatcgtccggcaccccgtcga	Protospacer
 ************.*.******** ...*. *

188. spacer 4.25|794448|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

cctgcggaagaaaccatccggcacattattca	CRISPR spacer
gctgcggaagaaatcgtccggcaccccgtcga	Protospacer
 ************.*.******** ...*. *

189. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 9, identity: 0.719

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
aaaaaaaggccctgcaatgatgcggggctttt	Protospacer
 *    *.****.*******.**********.

190. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to AJ011581 (Bacteriophage PS119 lysis genes 13, 19, 15, and packaging gene 3, complete cds) position: , mismatch: 9, identity: 0.719

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
aaaaaaaggccctgcaatgatgcggggctttt	Protospacer
 *    *.****.*******.**********.

191. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 9, identity: 0.719

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
aaaaaaaggccctgcaatgatgcggggctttt	Protospacer
 *    *.****.*******.**********.

192. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MH370387 (Salmonella phage S149, complete genome) position: , mismatch: 9, identity: 0.719

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
aaaaaaaggccctgcaatgatgcggggctttt	Protospacer
 *    *.****.*******.**********.

193. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MG407615 (Salmonella phage Bp96115, partial genome) position: , mismatch: 9, identity: 0.719

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
aaaaaaaggccctgcaatgatgcggggctttt	Protospacer
 *    *.****.*******.**********.

194. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_005841 (Enterobacteria phage ST104 DNA, complete genome) position: , mismatch: 9, identity: 0.719

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
aaaaaaaggccctgcaatgatgcggggctttt	Protospacer
 *    *.****.*******.**********.

195. spacer 4.30|794753|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

aatcgcgctccagctgggcgaaagcgtacccc	CRISPR spacer
tgtcgcgctccagctcggcgaaggcggccata	Protospacer
 .************* ******.***  * .

196. spacer 4.30|794753|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015733 (Arthrobacter sp. U41 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aatcgcgctccagctgggcgaaagcgtacccc	CRISPR spacer
tgtcgcgctccagctgcgcgaatgcggcaaca	Protospacer
 .************** ***** ***    *

197. spacer 4.33|794936|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaccctggccaaggaagcccaggtatctgc	CRISPR spacer
tatgaagtggctaaggaagctcaggtatctcc	Protospacer
.* .   ****.********.********* *

198. spacer 4.34|794997|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017294 (Pseudomonas aeruginosa strain PA83 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atgtggtgtttcagcaggtgggtcgcgatggt	CRISPR spacer
ctgtggtgtttcagcaggaggctctcttcgcg	Protospacer
 ***************** ** ** *  .*

199. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 9, identity: 0.719

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
tgccagcgccaggtgcaggcttcgatgatcgc	Protospacer
*    ***********.***.********  .

200. spacer 4.46|795729|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 9, identity: 0.719

tcggtgcgccaggtgcgggcctcgatgatgtt	CRISPR spacer
acggtgcggcaggtgctggcctcgtccccggt	Protospacer
 ******* ******* ******* .  .* *

201. spacer 4.48|795851|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaacaccgccgtgcatgatctcaacacaat	CRISPR spacer
gtcaacaccgccgtgcatgtgctcaatcccgg	Protospacer
*  ****************  *****. * .

202. spacer 4.48|795851|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032313 (Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence) position: , mismatch: 9, identity: 0.719

ggaaacaccgccgtgcatgatctcaacacaat	CRISPR spacer
gtcaacaccgccgtgcatgtgctcaatccggg	Protospacer
*  ****************  *****. *..

203. spacer 4.49|795912|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN033733 (Leviviridae sp. isolate H1_Bulk_29_scaffold_504 RNA-dependent RNA polymerase (H1Bulk29504_000001), hypothetical protein (H1Bulk29504_000002), hypothetical protein (H1Bulk29504_000003), and hypothetical protein (H1Bulk29504_000004) genes, complete cds) position: , mismatch: 9, identity: 0.719

tttgccggtcgctgaggtgagtttcgtttctc	CRISPR spacer
caaaaaggtcgctgaggagagtttcgtttcgt	Protospacer
.  .  *********** ************ .

204. spacer 4.50|795973|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010243 (Escherichia coli strain S56 plasmid A, complete sequence) position: , mismatch: 9, identity: 0.719

cagactgacgtacggattaagggtggcgcgct	CRISPR spacer
cctactgacgtacggatgaaggctggatgtat	Protospacer
*  ************** **** ***     *

205. spacer 4.51|796034|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 9, identity: 0.719

ggctacctcgacgatgagggcaagcaagccat	CRISPR spacer
agcgccctcgacgacgcgggcaagcaagagcc	Protospacer
.**  *********.* ***********   .

206. spacer 4.51|796034|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 9, identity: 0.719

ggctacctcgacgatgagggcaagcaagccat	CRISPR spacer
agcgccctcgacgacgcgggcaagcaagagcc	Protospacer
.**  *********.* ***********   .

207. spacer 4.51|796034|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 9, identity: 0.719

ggctacctcgacgatgagggcaagcaagccat	CRISPR spacer
agcgccctcgacgacgcgggcaagcaagagcc	Protospacer
.**  *********.* ***********   .

208. spacer 4.61|796644|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015747 (Shinella sp. HZN7 plasmid pShin-11, complete sequence) position: , mismatch: 9, identity: 0.719

gatgctcatggtctcgccgatcgtgacatgaa	CRISPR spacer
catcctcatggtctcgccgctcgtcgaaggcc	Protospacer
 ** *************** **** . * *

209. spacer 4.62|796705|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015747 (Shinella sp. HZN7 plasmid pShin-11, complete sequence) position: , mismatch: 9, identity: 0.719

gatgctcatggtctcgccgatcgtgacatgaa	CRISPR spacer
catcctcatggtctcgccgctcgtcgaaggcc	Protospacer
 ** *************** **** . * *

210. spacer 4.66|796949|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014802 (Salipiger profundus strain JLT2016 plasmid pTPRO6, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcaccgcgctgaggttgcagcagcacaagc	CRISPR spacer
gcccaccgggctgaggttgcggcagcggtcga	Protospacer
*. ***** ***********.*****.   *

211. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK433577 (Klebsiella phage ST512-KPC3phi13.6, complete genome) position: , mismatch: 9, identity: 0.719

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcttccgccggtacgtctgccagggtctgaaa	Protospacer
   ********** ********* **.*   *

212. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK433581 (Klebsiella phage ST258-KPC3phi16.1, complete genome) position: , mismatch: 9, identity: 0.719

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcttccgccggtacgtctgccagggtctgaaa	Protospacer
   ********** ********* **.*   *

213. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK416011 (Klebsiella phage ST437-OXA245phi4.1, complete genome) position: , mismatch: 9, identity: 0.719

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcttccgccggtacgtctgccagggtctgaaa	Protospacer
   ********** ********* **.*   *

214. spacer 4.74|797437|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tttggcccggaggttgctgaaacgttctggga	CRISPR spacer
gttggcccggaggctgctgaagcggacggtcg	Protospacer
 ************.*******.**  * *  .

215. spacer 4.75|797498|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009129 (Corynebacterium sp. L2-79-05 plasmid pLEW279b, complete sequence) position: , mismatch: 9, identity: 0.719

atatcatgtgccagggcaagctgctccggggt	CRISPR spacer
cattcttgtgcctgggcaagctgctcttctgt	Protospacer
   ** ****** *************.   **

216. spacer 4.77|797620|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 9, identity: 0.719

ttcaccggtgccatcgcagcctgcttcaaccc	CRISPR spacer
atcatcggtgccatcgccgcctgcggcgtcgg	Protospacer
 ***.************ ******  *. *

217. spacer 4.85|798108|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

cagatggcacaccaatctgggacgcgccacta	CRISPR spacer
cgtgctgcacaccaatctcggccgcgccattc	Protospacer
*. .. ************ ** *******.*

218. spacer 4.85|798108|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.719

cagatggcacaccaatctgggacgcgccacta	CRISPR spacer
cgtgctgcacaccaatctcggccgcgccattc	Protospacer
*. .. ************ ** *******.*

219. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
gttcgcgtgccagttcctcgacgatgatggcg	Protospacer
.  .*   ***************.**** ***

220. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
ccgtggtggcgagttcctcgatggtctgcgcc	Protospacer
  ******** **********.***   .**

221. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 9, identity: 0.719

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
tcaggctctccagttcctcgtcggtgatcgcg	Protospacer
  . * *  *********** *******.***

222. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 9, identity: 0.719

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tcggcgcgctcaacgtcggtggcgccggccgc	Protospacer
 . ********.**********.*****.. .

223. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037915 (Sphingomonas sp. AAP5 plasmid p150, complete sequence) position: , mismatch: 9, identity: 0.719

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
gtctggcgatcgacgtcggtggtgacggcgta	Protospacer
.*.  *** *************** ***. *

224. spacer 4.95|798718|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgagttcgccaccgaagcaggcgaccgcgt	CRISPR spacer
gatggtggcgacaccgaagccggcgaccgcga	Protospacer
* .*.   ** ********* **********

225. spacer 4.96|798779|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.719

cccgatacgcggagcaattcagaggctctgta	CRISPR spacer
gtctttacgccgagaaattcagaggctccgat	Protospacer
 .*  ***** *** *************.*

226. spacer 4.100|799023|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MT639646 (Microbacterium phage Rasputia, complete genome) position: , mismatch: 9, identity: 0.719

gcaaccttgtggaggtctacgagggttctgta	CRISPR spacer
agaacctcgtggacgtctacgagggcgaggca	Protospacer
. *****.***** ***********.   *.*

227. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

ggcttgtggacgagtttgtcttccaggccgta	CRISPR spacer
ggcttgtggacgagtacgtcttcgcgcggctg	Protospacer
*************** .******  *    *.

228. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

ggcttgtggacgagtttgtcttccaggccgta	CRISPR spacer
ggcttgtggacgagtacgtcttcgcgcggctg	Protospacer
*************** .******  *    *.

229. spacer 4.101|799084|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

ggcttgtggacgagtttgtcttccaggccgta	CRISPR spacer
ggcttgtggacgagtacgtcttcgcgcggctg	Protospacer
*************** .******  *    *.

230. spacer 4.6|793289|32|NC_009342|CRISPRCasFinder,CRT matches to MN224564 (Streptomyces phage Araceli, complete genome) position: , mismatch: 10, identity: 0.688

ctttctgatccgacttgaccatgtaggaacca	CRISPR spacer
ccgcctgatccgacttcaccgtgtaggtgatc	Protospacer
*. .************ ***.****** . .

231. spacer 4.6|793289|32|NC_009342|CRISPRCasFinder,CRT matches to MH229863 (Streptomyces phage JackieB, complete genome) position: , mismatch: 10, identity: 0.688

ctttctgatccgacttgaccatgtaggaacca	CRISPR spacer
ccgcctgatccgacttcaccgtgtaggtgatc	Protospacer
*. .************ ***.****** . .

232. spacer 4.6|793289|32|NC_009342|CRISPRCasFinder,CRT matches to MH229862 (Streptomyces phage Henoccus, complete genome) position: , mismatch: 10, identity: 0.688

ctttctgatccgacttgaccatgtaggaacca	CRISPR spacer
ccgcctgatccgacttcaccgtgtaggtgatc	Protospacer
*. .************ ***.****** . .

233. spacer 4.9|793472|32|NC_009342|CRISPRCasFinder,CRT matches to MH045568 (Microbacterium phage Kieran, complete genome) position: , mismatch: 10, identity: 0.688

gaggcactccagcagtacgtctcacgtgtcat	CRISPR spacer
ctggccctccagcagtacgtcgcacaccagaa	Protospacer
  *** *************** ***..   *

234. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 10, identity: 0.688

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
ggtgctgcgcgacgacggcgcggtgcagctgc	Protospacer
 .** **************.*****.. *.

235. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 10, identity: 0.688

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
cgccgtgcgcggcgacggcaccgtgtgctggt	Protospacer
*.. .******.********* ******.

236. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
ggcggtgcgcggcgacggcacggtgcgctggt	Protospacer
 ..*.******.*************.**.

237. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.688

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
gctgatgctggacgacggcacggtggagcgcc	Protospacer
  ******  *************** . * .

238. spacer 4.17|793960|32|NC_009342|CRISPRCasFinder,CRT matches to KY963371 (Bacillus phage Carmel_SA, complete genome) position: , mismatch: 10, identity: 0.688

gcaagctcctcatcgcggaaatccacatcagt	CRISPR spacer
attctttcctcatcgcggaatttcacatctgg	Protospacer
..   .************** *.****** *

239. spacer 4.20|794143|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
tgcccacctggacacgaccaacgccaccgtcc	Protospacer
 ..  ******** * ************. *

240. spacer 4.20|794143|32|NC_009342|CRISPRCasFinder,CRT matches to MN693844 (Marine virus AFVG_250M676, complete genome) position: , mismatch: 10, identity: 0.688

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
cggcgtctgggacggcaccaacgccaccaacg	Protospacer
 .  . *. ****  *****************

241. spacer 4.21|794204|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
tgcccacctggacacgaccaacgccaccgtcc	Protospacer
 ..  ******** * ************. *

242. spacer 4.21|794204|32|NC_009342|CRISPRCasFinder,CRT matches to MN693844 (Marine virus AFVG_250M676, complete genome) position: , mismatch: 10, identity: 0.688

gatgaacctggactccaccaacgccaccaacg	CRISPR spacer
cggcgtctgggacggcaccaacgccaccaacg	Protospacer
 .  . *. ****  *****************

243. spacer 4.22|794265|32|NC_009342|CRISPRCasFinder,CRT matches to MN036093 (Leviviridae sp. isolate H4_Rhizo_44_scaffold_297_e_1965 sequence) position: , mismatch: 10, identity: 0.688

gcgatgtgctggatctgctcttcggtcaaaat	CRISPR spacer
ggttagtgcaggaactgctcttcggtcacccg	Protospacer
*    **** *** **************

244. spacer 4.23|794326|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gctcctcggtgatgatgtcgaatccgaaaagt	CRISPR spacer
cggtctcggtgatgatggcgaatgcgatgatc	Protospacer
   .************* ***** *** .* .

245. spacer 4.26|794509|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.688

tatttcaagccccgcaatgacgcggggctttc	CRISPR spacer
cgaatgaagccccgcaacgacgccgggctgat	Protospacer
..  * ***********.***** *****  .

246. spacer 4.28|794631|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MG049919 (Shigella phage vB_SflS-ISF001, complete genome) position: , mismatch: 10, identity: 0.688

atcgcgaatgctcacccgttacaccagccttg	CRISPR spacer
cctggcgctgctcaaccgttaccccagccttc	Protospacer
 ..*  . ****** ******* ********

247. spacer 4.30|794753|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018234 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.688

aatcgcgctccagctgggcgaaagcgtacccc	CRISPR spacer
gcgcgcgctcgagctgggcgacagcgccgagc	Protospacer
.  ******* ********** ****.    *

248. spacer 4.30|794753|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 10, identity: 0.688

aatcgcgctccagctgggcgaaagcgtacccc	CRISPR spacer
gggcgcgctcgagctgggcgacagcgccgagc	Protospacer
.. ******* ********** ****.    *

249. spacer 4.30|794753|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023066 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence) position: , mismatch: 10, identity: 0.688

aatcgcgctccagctgggcgaaagcgtacccc	CRISPR spacer
gcgcgcgctcgagctgggcgacagcgccgagc	Protospacer
.  ******* ********** ****.    *

250. spacer 4.49|795912|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccggtcgctgaggtgagtttcgtttctc	CRISPR spacer
gcagccggtcgcggaggtgaatttcgccctcc	Protospacer
 . ********* *******.*****.....*

251. spacer 4.49|795912|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030129 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccggtcgctgaggtgagtttcgtttctc	CRISPR spacer
gcagccggtcgcggaggtgaatttcgccctcc	Protospacer
 . ********* *******.*****.....*

252. spacer 4.51|796034|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 10, identity: 0.688

ggctacctcgacgatgagggcaagcaagccat	CRISPR spacer
cctggctctgacgatgcgggccagcaagccat	Protospacer
  . .*...******* **** **********

253. spacer 4.60|796583|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006765 (Corynebacterium doosanense CAU 212 = DSM 45436 strain CAU 212(T) plasmid pCdoos1, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatcaggttgtgaagttggctgctatcggt	CRISPR spacer
atgatcaggtggtgaagatggctgcggagaac	Protospacer
 ********* ****** ******* .  ...

254. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagc-----gttttcta	CRISPR spacer
tgacccgccggaaggtctgccagccggaggcc-----	Protospacer
.**.******* ************     *..

255. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to KY130461 (Mycobacterium phage Taptic, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

256. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MH001446 (Mycobacterium phage Megabear, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

257. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to AP018462 (Mycobacterium phage D12 DNA, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

258. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK494131 (Mycobacterium phage GodPhather, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

259. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK494114 (Mycobacterium phage Argie, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

260. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MK494132 (Mycobacterium phage Cepens, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

261. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to AP018463 (Mycobacterium phage PR DNA, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

262. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MH001450 (Mycobacterium phage Jeon, complete genome) position: , mismatch: 10, identity: 0.688

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
gcatccgccggcagatctgccagcgcggcccg	Protospacer
  *********.**.**********.  .*..

263. spacer 4.79|797742|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN694346 (Marine virus AFVG_250M477, complete genome) position: , mismatch: 10, identity: 0.688

aatccgcagcttgtgccagccactccgaagca	CRISPR spacer
ccacagcagcttcttccagccactccgagaac	Protospacer
   * ******* * *************..

264. spacer 4.80|797803|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 10, identity: 0.688

ttgttcgtcggtgagttcgccgggttcaggtg	CRISPR spacer
gcctcgtccggtgagaccgccgggttcaggtt	Protospacer
 . *.  .******* .**************

265. spacer 4.80|797803|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to CP054934 (Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgttcgtcggtgagttcgccgggttcaggtg	CRISPR spacer
caggtcggcgctgagttcgccgggttcccaac	Protospacer
. * *** ** ****************  .

266. spacer 4.86|798169|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MH019216 (Streptomyces phage Wentworth, complete genome) position: , mismatch: 10, identity: 0.688

aggattacgcgacggcggtggaggaacatgcc	CRISPR spacer
ccttctaagcgacggcggtgcaggaacagacg	Protospacer
    .** ************ ******* .*

267. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
tggtggtggccagctcctcgaaggtgccgaga	Protospacer
 .***********.******* **** . . .

268. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049260 (Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence) position: , mismatch: 10, identity: 0.688

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
cgcccggcaccagttcctcgacggggatttcg	Protospacer
 . . *  .*************** **** **

269. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051544 (Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence) position: , mismatch: 10, identity: 0.688

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
cgacgtgacccagttcctcggcggtgatggcg	Protospacer
 ...*  . ***********.******* ***

270. spacer 4.87|798230|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011048 (Cronobacter sakazakii strain ATCC 29544 plasmid CSK29544_1p, complete sequence) position: , mismatch: 10, identity: 0.688

aagtggtggccagttcctcgacggtgattgcg	CRISPR spacer
cgcccggcaccagttcctcgacggggatttcg	Protospacer
 . . *  .*************** **** **

271. spacer 4.88|798291|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 10, identity: 0.688

tgaacgccacctgaattccggtggcgattttc	CRISPR spacer
gtgtcgccaccggcattccggtggcgaccggc	Protospacer
  . ******* * *************..  *

272. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 10, identity: 0.688

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
tggaagcgctcgacgtcggtggtggcggggcc	Protospacer
   . ******************* ***  ..

273. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_015951 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence) position: , mismatch: 10, identity: 0.688

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
agaacgtgctcgacgtcgctggtgccgacgcc	Protospacer
*  .**.*********** ********.. ..

274. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to MN813693 (Mycobacterium phage Imvubu, complete genome) position: , mismatch: 10, identity: 0.688

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
ccgccgcgctcgccgtcggcggtgccgccctc	Protospacer
 .  ******** ******.******* ..*.

275. spacer 4.5|793228|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP033789 (Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.656

aaaattccggctccgtgaccttagctatagac	CRISPR spacer
aaaatttcggctccgttaccttattctcgtct	Protospacer
******.********* ****** .. ..  .

276. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
tgctgtgcgcggcgacggcacggtgcgctggt	Protospacer
... .******.*************.**.

277. spacer 4.16|793899|32|NC_009342|CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

catgatgcgcgacgacggcacggtgtgccctg	CRISPR spacer
tgccgtgcgcggcgacggcacggtgcgctggt	Protospacer
... .******.*************.**.

278. spacer 4.52|796095|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 11, identity: 0.656

ccgaaacgccaaccacagtgcgggtggattga	CRISPR spacer
ggcgaacgccatccccagtgcgggtggcaacc	Protospacer
   .******* ** ************

279. spacer 4.59|796522|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 11, identity: 0.656

cttctcttca---------gctttcgcaatggactcagcgc	CRISPR spacer
---------agaaatagaagctttcgcaacggacgcagcgc	Protospacer
         *         **********.**** ******

280. spacer 4.59|796522|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NC_020542 (Sphingomonas sp. MM-1 plasmid pISP0, complete sequence) position: , mismatch: 11, identity: 0.656

cttctcttca---------gctttcgcaatggactcagcgc	CRISPR spacer
---------agaaatagaagctttcgcaacggacgcagcgc	Protospacer
         *         **********.**** ******

281. spacer 4.67|797010|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

cgatccgccggtaggtctgccagcgttttcta	CRISPR spacer
tgacccgccggaaggtctgccagccggaggcg	Protospacer
.**.******* ************      ..

282. spacer 4.77|797620|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 11, identity: 0.656

ttcaccggtgccatcgcagcctgcttcaaccc	CRISPR spacer
ctcaccggcgccatcgcagccggccggtggga	Protospacer
.*******.************ **.   .

283. spacer 4.77|797620|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 11, identity: 0.656

ttcaccggtgccatcgcagcctgcttcaaccc	CRISPR spacer
ctcaccggcgccatcgcagccggccggtggga	Protospacer
.*******.************ **.   .

284. spacer 4.88|798291|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 11, identity: 0.656

--tgaacgccacctgaattccggtggcgattttc	CRISPR spacer
gggtgtcgccaccggcattccggtggcgaccg--	Protospacer
    . ******* * *************..

285. spacer 4.92|798535|32|NC_009342|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134449 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 7, complete sequence) position: , mismatch: 11, identity: 0.656

attgcgcgctcgacgtcggtggtgccggtttt	CRISPR spacer
cgatcgcgctcgacgtcgacggtgccgtcgcg	Protospacer
    **************..******* . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

132305 : 171598

Streptococcus_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157998257.1\|132305_132482_+\|transposase	transposase	NA	NA	NA	NA
WP_011896418.1\|132808_133987_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_011896419.1\|134355_135357_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003858656.1\|135521_136841_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_011896421.1\|136867_138187_+	GntP family permease	NA	NA	NA	NA
WP_011896422.1\|138655_139357_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.2e-42	49.7
WP_011896424.1\|139740_141222_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_003859489.1\|141292_141868_-	CueP family metal-binding protein	NA	NA	NA	NA
WP_162467701.1\|142187_142994_+	response regulator	W8CYM9	Bacillus_phage	2.4e-39	38.4
WP_011896426.1\|142990_144190_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.4e-27	27.7
WP_011896427.1\|144248_144581_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_011896428.1\|144631_146854_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-51	30.3
WP_006284591.1\|146901_147516_+	YdhK family protein	NA	NA	NA	NA
WP_044027397.1\|147871_148084_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_080506388.1\|148035_148278_-	AsnC family transcriptional regulator	NA	NA	NA	NA
WP_011896431.1\|149258_151136_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.9e-106	37.4
WP_011015536.1\|151711_152029_-	hypothetical protein	NA	NA	NA	NA
WP_011015535.1\|152233_152470_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_011896436.1\|153412_154030_-	recombinase family protein	E5FFF9	Burkholderia_phage	8.7e-37	48.1
WP_044026808.1\|155012_155660_-	vitamin K epoxide reductase family protein	NA	NA	NA	NA
WP_003860228.1\|155670_156354_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_074495768.1\|156395_156728_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011896438.1\|156872_157622_-	M23 family metallopeptidase	W8ED04	Mycobacterium_phage	4.0e-20	46.8
WP_044026812.1\|158904_160965_-	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_011896441.1\|161223_161808_+	copper resistance protein CopC	NA	NA	NA	NA
WP_011896442.1\|161984_162350_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011896443.1\|162346_164317_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-91	36.8
WP_044026813.1\|164379_165420_+	SURF1 family protein	NA	NA	NA	NA
WP_003860207.1\|165543_167631_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.7e-114	39.5
WP_011896445.1\|167919_169011_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_003860198.1\|169438_169759_-\|transposase	transposase	Q8W6R2	Burkholderia_virus	3.0e-17	51.7
WP_003860196.1\|169745_170393_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	6.3e-30	41.5
WP_003860195.1\|170446_171598_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.1e-37	35.0

DBSCAN-SWA_2

2073962 : 2105963

Pasteurella_phage(55.56%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011897438.1\|2073962_2074415_-	hypothetical protein	A0A2H4PIY7	Corynebacterium_phage	2.0e-14	41.3
WP_011897439.1\|2074414_2075209_-	N-acetylmuramoyl-L-alanine amidase	Q9MBI0	Corynebacterium_phage	3.9e-106	68.3
WP_158300336.1\|2075688_2075856_-	hypothetical protein	NA	NA	NA	NA
WP_011897441.1\|2076059_2076452_-	hypothetical protein	NA	NA	NA	NA
WP_011897442.1\|2076448_2076613_-	hypothetical protein	NA	NA	NA	NA
WP_011897443.1\|2076605_2076968_-	hypothetical protein	NA	NA	NA	NA
WP_011897444.1\|2076978_2078994_-	hypothetical protein	A0A2H4PIS0	Corynebacterium_phage	1.9e-104	76.4
WP_144063652.1\|2078983_2079571_-	hypothetical protein	A0A1L6BZF8	Pasteurella_phage	1.8e-52	55.9
WP_011897446.1\|2079577_2081206_-	hypothetical protein	A0A1L6BZG4	Pasteurella_phage	6.7e-230	68.5
WP_011897447.1\|2081210_2082059_-	hypothetical protein	A0A1L6BZG2	Pasteurella_phage	5.9e-52	39.1
WP_144063664.1\|2082055_2085562_-	transglycosylase SLT domain-containing protein	Q9MBI9	Corynebacterium_phage	5.4e-91	47.0
WP_044027229.1\|2086859_2087276_-	hypothetical protein	A0A1L6BZG5	Pasteurella_phage	5.9e-21	46.4
WP_011897450.1\|2087245_2087650_-	hypothetical protein	NA	NA	NA	NA
WP_011897451.1\|2087742_2088384_-	hypothetical protein	A0A1L6BZE9	Pasteurella_phage	4.2e-34	42.9
WP_011897452.1\|2088380_2088776_-	hypothetical protein	NA	NA	NA	NA
WP_011897453.1\|2088786_2089068_-	hypothetical protein	NA	NA	NA	NA
WP_011897454.1\|2089067_2089400_-	hypothetical protein	A0A1L6BZE8	Pasteurella_phage	2.2e-34	62.7
WP_144063665.1\|2089392_2089830_-	hypothetical protein	A0A1L6BZF5	Pasteurella_phage	6.8e-44	64.6
WP_044027232.1\|2089863_2090163_-	hypothetical protein	A0A1L6BZF2	Pasteurella_phage	8.5e-14	44.8
WP_011897457.1\|2090237_2091206_-	hypothetical protein	A0A1L6BZF0	Pasteurella_phage	7.9e-77	48.0
WP_011897458.1\|2091239_2091614_-	hypothetical protein	A0A1L6BZF4	Pasteurella_phage	2.1e-25	57.6
WP_011897459.1\|2091622_2093002_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A1L6BZF6	Pasteurella_phage	9.3e-156	63.2
WP_144063653.1\|2092989_2094309_-	hypothetical protein	A0A1L6BZF1	Pasteurella_phage	2.1e-173	69.0
WP_158300337.1\|2094296_2095940_-	hypothetical protein	A0A1L6BZD9	Pasteurella_phage	1.8e-246	78.0
WP_011897462.1\|2095945_2096239_-	hypothetical protein	A0A1L6BZG9	Pasteurella_phage	1.5e-23	63.3
WP_144063654.1\|2096232_2096556_-	hypothetical protein	A0A1L6BZE3	Pasteurella_phage	6.1e-34	67.3
WP_144063655.1\|2096783_2097167_+	hypothetical protein	NA	NA	NA	NA
WP_080506481.1\|2097561_2098329_-	hypothetical protein	A0A1W6JQA2	Corynebacterium_phage	3.2e-20	39.9
WP_011897464.1\|2098538_2099156_-	hypothetical protein	NA	NA	NA	NA
WP_044027236.1\|2099520_2100147_-	hypothetical protein	NA	NA	NA	NA
WP_011897465.1\|2100143_2100503_-	hypothetical protein	M4W8N6	Mycobacterium_phage	7.8e-30	54.7
WP_011897466.1\|2100495_2100936_-	hypothetical protein	NA	NA	NA	NA
WP_011897468.1\|2101168_2101828_-	oligoribonuclease	A0A1P8D5X1	Corynebacterium_phage	1.8e-27	41.4
WP_011897469.1\|2101824_2102076_-	hypothetical protein	NA	NA	NA	NA
WP_050749900.1\|2102332_2102593_-	hypothetical protein	A0A1P8D5S3	Corynebacterium_phage	1.3e-26	71.2
WP_044027239.1\|2102593_2102830_-	hypothetical protein	NA	NA	NA	NA
WP_011897472.1\|2102826_2103354_-	single-stranded DNA-binding protein	A0A1P8D5R5	Corynebacterium_phage	7.6e-58	66.1
WP_144063666.1\|2103340_2103796_-	hypothetical protein	NA	NA	NA	NA
WP_044027243.1\|2103827_2104673_-	helix-turn-helix domain-containing protein	A0A2K9VGL5	Pontimonas_phage	6.8e-16	47.5
WP_158300338.1\|2104669_2104810_-	hypothetical protein	NA	NA	NA	NA
WP_144063667.1\|2104820_2105228_-	hypothetical protein	NA	NA	NA	NA
WP_011897476.1\|2105238_2105574_-	hypothetical protein	A0A1P8D5R3	Corynebacterium_phage	1.9e-38	68.8
WP_011897477.1\|2105570_2105963_-	hypothetical protein	A0A1P8D5Q5	Corynebacterium_phage	7.2e-21	51.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009343

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4989 : 18573

Streptomyces_phage(25.0%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044027501.1\|4989_5337_+	hypothetical protein	A0A1P8D5W3	Corynebacterium_phage	2.7e-11	36.1
WP_044027502.1\|5336_5579_+	hypothetical protein	NA	NA	NA	NA
WP_044027503.1\|5575_5905_+	hypothetical protein	NA	NA	NA	NA
WP_044027504.1\|5901_6207_+	hypothetical protein	NA	NA	NA	NA
WP_044027505.1\|6218_6533_+	hypothetical protein	A0A2H4P898	Corynebacterium_phage	1.7e-12	51.3
WP_044027506.1\|6525_6906_+	hypothetical protein	NA	NA	NA	NA
WP_158300342.1\|6902_7061_+	hypothetical protein	NA	NA	NA	NA
WP_044027507.1\|7254_7575_+	hypothetical protein	NA	NA	NA	NA
WP_044027508.1\|7571_7790_+	hypothetical protein	NA	NA	NA	NA
WP_044027509.1\|7776_8130_+	hypothetical protein	A0A0C5ADP9	Mycobacterium_phage	2.9e-29	60.7
WP_044027510.1\|8190_9306_+	hypothetical protein	B4UTW9	Rhizobium_phage	2.8e-09	22.4
WP_158300343.1\|9321_9798_+	WhiB family transcriptional regulator	NA	NA	NA	NA
WP_158300344.1\|9794_10301_+	dUTP diphosphatase	A0A1L6BZE7	Pasteurella_phage	1.2e-23	46.0
WP_044027537.1\|10654_10876_+	hypothetical protein	A0A1I9S7W0	Rhodococcus_phage	8.2e-14	55.1
WP_044027511.1\|10868_11150_+	hypothetical protein	NA	NA	NA	NA
WP_080506498.1\|11614_12277_+	FAD-dependent thymidylate synthase	A0A0K0N765	Gordonia_phage	1.9e-58	56.5
WP_044027513.1\|12335_12758_+	hypothetical protein	NA	NA	NA	NA
WP_044027514.1\|12848_13376_+	ParB N-terminal domain-containing protein	A0A1B0XTN8	Freshwater_phage	4.7e-23	45.6
WP_011898174.1\|13463_13892_+	HTH domain-containing protein	NA	NA	NA	NA
WP_050749926.1\|13857_15162_+\|terminase	PBSX family phage terminase large subunit	A0A1V0E630	Streptomyces_phage	4.0e-92	42.8
WP_044027515.1\|15200_15410_+	hypothetical protein	NA	NA	NA	NA
WP_011898176.1\|15409_15679_+	hypothetical protein	A0A160DES3	Gordonia_phage	7.9e-19	50.0
WP_044027516.1\|15932_17462_+\|portal	phage portal protein	A0A1J0MCN7	Streptomyces_phage	4.9e-81	35.1
WP_044027517.1\|17466_18573_+	hypothetical protein	A0A1J0MCS2	Streptomyces_phage	1.0e-56	38.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009342

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009343

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection