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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011837 Clostridium kluyveri NBRC 12016, complete genome 6 crisprs cas3,WYL,csa3,RT,DEDDh,cas14j,PD-DExK,PrimPol,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,c2c9_V-U4 1 12 9 0
NC_011836 Clostridium kluyveri NBRC 12016 plasmid pCKL1, complete sequence 0 crisprs DEDDh 0 0 2 0

Results visualization

1. NC_011837
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011837_1 1304217-1304318 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011837_2 2298663-2299412 Orphan III-B
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011837_3 2754450-2755268 TypeI-B III-B
12 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011837_4 2756697-2757118 TypeI-B III-B
6 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011837_5 2766591-2768194 TypeI-B III-B:NA
24 spacers
cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011837_6 3510143-3511358 Orphan III-B
18 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_011837_3 3.11|2755137|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR 2755137-2755172 36 NC_011837.1 453440-453475 0 1.0

1. spacer 3.11|2755137|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR matches to position: 453440-453475, mismatch: 0, identity: 1.0

tttccgaggaagaccaatgtccccttcggtattttg	CRISPR spacer
tttccgaggaagaccaatgtccccttcggtattttg	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011837_2 2.1|2298693|36|NC_011837|CRISPRCasFinder,CRT 2298693-2298728 36 NZ_CP018336 Clostridium kluyveri strain JZZ plasmid unnamed, complete sequence 17489-17524 1 0.972
NC_011837_5 5.1|2766621|27|NC_011837|CRISPRCasFinder 2766621-2766647 27 AP014331 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C30, *** SEQUENCING IN PROGRESS *** 16717-16743 5 0.815
NC_011837_5 5.1|2766621|27|NC_011837|CRISPRCasFinder 2766621-2766647 27 MN693180 Marine virus AFVG_25M318, complete genome 12880-12906 5 0.815
NC_011837_4 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 2756988-2757021 34 NC_013940 Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence 249280-249313 6 0.824
NC_011837_5 5.1|2766621|27|NC_011837|CRISPRCasFinder 2766621-2766647 27 NZ_CP010123 Escherichia coli strain C5 plasmid A, complete genome 135983-136009 6 0.778
NC_011837_5 5.1|2766621|27|NC_011837|CRISPRCasFinder 2766621-2766647 27 MF403008 Agrobacterium phage Atu_ph07, complete genome 321420-321446 6 0.778
NC_011837_5 5.1|2766621|27|NC_011837|CRISPRCasFinder 2766621-2766647 27 NZ_CP026690 Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM8, complete sequence 27067-27093 6 0.778
NC_011837_5 5.24|2768130|35|NC_011837|CRISPRCasFinder,PILER-CR 2768130-2768164 35 MK250028 Prevotella phage Lak-B9, complete genome 515385-515419 7 0.8
NC_011837_5 5.24|2768130|35|NC_011837|CRISPRCasFinder,PILER-CR 2768130-2768164 35 MK250027 Prevotella phage Lak-B8, complete genome 517029-517063 7 0.8
NC_011837_5 5.24|2768130|35|NC_011837|CRISPRCasFinder,PILER-CR 2768130-2768164 35 MK250026 Prevotella phage Lak-B7, complete genome 516060-516094 7 0.8
NC_011837_5 5.25|2766614|34|NC_011837|CRT 2766614-2766647 34 NZ_CP021438 Bacillus thuringiensis strain C15 plasmid pBMB172, complete sequence 130021-130054 7 0.794
NC_011837_4 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 2756988-2757021 34 NC_020292 Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence 42490-42523 8 0.765
NC_011837_5 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR 2767536-2767569 34 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 629619-629652 8 0.765
NC_011837_5 5.25|2766614|34|NC_011837|CRT 2766614-2766647 34 AP014331 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C30, *** SEQUENCING IN PROGRESS *** 16717-16750 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NZ_CP014152 Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence 67487-67520 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 150626-150659 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NZ_CP013684 Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence 36620-36653 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NZ_CP013710 Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence 211865-211898 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NC_010379 Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence 3653-3686 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NZ_CP013700 Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence 136079-136112 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 24381-24414 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 90994-91027 8 0.765
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 21132-21165 8 0.765
NC_011837_5 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR 2767536-2767569 34 MN693675 Marine virus AFVG_250M630, complete genome 13333-13366 9 0.735
NC_011837_5 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR 2767536-2767569 34 MN693578 Marine virus AFVG_25M520, complete genome 13571-13604 9 0.735
NC_011837_5 5.17|2767667|34|NC_011837|CRISPRCasFinder,PILER-CR 2767667-2767700 34 NZ_CP017199 Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-2, complete genome 625-658 9 0.735
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 DQ535032 Lactococcus lactis phage KSY1, complete genome 26781-26814 9 0.735
NC_011837_6 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3511229-3511262 34 NC_009817 Lactococcus phage KSY1, complete genome 26781-26814 9 0.735
NC_011837_2 2.4|2298888|35|NC_011837|CRISPRCasFinder,CRT,PILER-CR 2298888-2298922 35 NZ_CP035936 Acinetobacter cumulans strain WCHAc060092 plasmid p1_060092, complete sequence 47002-47036 10 0.714
NC_011837_2 2.4|2298888|35|NC_011837|CRISPRCasFinder,CRT,PILER-CR 2298888-2298922 35 CP040041 Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence 274743-274777 10 0.714
NC_011837_2 2.8|2299151|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR 2299151-2299186 36 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 152984-153019 10 0.722
NC_011837_2 2.8|2299151|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR 2299151-2299186 36 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 229164-229199 10 0.722
NC_011837_4 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 2756988-2757021 34 MG869623 Polaromonas sp. W10N plasmid pW10NP1, complete sequence 2521-2554 10 0.706
NC_011837_4 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT 2756988-2757021 34 NZ_CP022346 Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence 105153-105186 10 0.706
NC_011837_5 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR 2767536-2767569 34 NZ_CP053316 Bacillus circulans strain GN03 plasmid unnamed, complete sequence 149754-149787 10 0.706
NC_011837_6 6.12|3510901|36|NC_011837|PILER-CR,CRISPRCasFinder,CRT 3510901-3510936 36 NZ_CP015325 Bacillus filamentosus strain Hbe603 plasmid pBEH3, complete sequence 84187-84222 10 0.722
NC_011837_2 2.11|2299347|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR 2299347-2299382 36 NZ_CP015111 Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence 269568-269603 11 0.694

1. spacer 2.1|2298693|36|NC_011837|CRISPRCasFinder,CRT matches to NZ_CP018336 (Clostridium kluyveri strain JZZ plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.972

aagcagtaaagataaatctttaaggattaaaaatgg	CRISPR spacer
aagcagtaaagataaatctttaaggattgaaaatgg	Protospacer
****************************.*******

2. spacer 5.1|2766621|27|NC_011837|CRISPRCasFinder matches to AP014331 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C30, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.815

ataaatttaaacatttaccattaaaat	CRISPR spacer
taaaatttaaaaatttacaattaaaaa	Protospacer
  ********* ****** ******* 

3. spacer 5.1|2766621|27|NC_011837|CRISPRCasFinder matches to MN693180 (Marine virus AFVG_25M318, complete genome) position: , mismatch: 5, identity: 0.815

ataaatttaaacatttaccattaaaat	CRISPR spacer
gtaagtttaaacatttacgattaatgt	Protospacer
.***.************* ***** .*

4. spacer 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 6, identity: 0.824

ccaaggatttaatagaagaaatacataatttaga	CRISPR spacer
taaataatttaatggaagaaatacaaaatttaga	Protospacer
. ** .*******.*********** ********

5. spacer 5.1|2766621|27|NC_011837|CRISPRCasFinder matches to NZ_CP010123 (Escherichia coli strain C5 plasmid A, complete genome) position: , mismatch: 6, identity: 0.778

ataaatttaaacatttaccattaaaat	CRISPR spacer
taaaatttaaacatttaatattaaata	Protospacer
  *************** .******  

6. spacer 5.1|2766621|27|NC_011837|CRISPRCasFinder matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 6, identity: 0.778

ataaatttaaacatttaccattaaaat	CRISPR spacer
tccaaattaaacatttaccattaataa	Protospacer
 . ** ****************** * 

7. spacer 5.1|2766621|27|NC_011837|CRISPRCasFinder matches to NZ_CP026690 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM8, complete sequence) position: , mismatch: 6, identity: 0.778

ataaatttaaacatttaccattaaaat-----	CRISPR spacer
gtaaatttaaacatttacc-----aatttcca	Protospacer
.******************     ***     

8. spacer 5.24|2768130|35|NC_011837|CRISPRCasFinder,PILER-CR matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 7, identity: 0.8

taaatagtaaaaattataaaaattgaatacgttca	CRISPR spacer
gaaatagaaaaaattataaaaaatgaataattttt	Protospacer
 ****** ************** ******  **. 

9. spacer 5.24|2768130|35|NC_011837|CRISPRCasFinder,PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 7, identity: 0.8

taaatagtaaaaattataaaaattgaatacgttca	CRISPR spacer
gaaatagaaaaaattataaaaaatgaataattttt	Protospacer
 ****** ************** ******  **. 

10. spacer 5.24|2768130|35|NC_011837|CRISPRCasFinder,PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 7, identity: 0.8

taaatagtaaaaattataaaaattgaatacgttca	CRISPR spacer
gaaatagaaaaaattataaaaaatgaataattttt	Protospacer
 ****** ************** ******  **. 

11. spacer 5.25|2766614|34|NC_011837|CRT matches to NZ_CP021438 (Bacillus thuringiensis strain C15 plasmid pBMB172, complete sequence) position: , mismatch: 7, identity: 0.794

gttcaacataaatttaaacatttac---cattaaaat	CRISPR spacer
tttcaacctaaatttaaacatgtacttacactaa---	Protospacer
 ****** ************* ***   **.***   

12. spacer 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NC_020292 (Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence) position: , mismatch: 8, identity: 0.765

ccaaggattt------aatagaagaaatacataatttaga	CRISPR spacer
------atttagaggaaatagaagaattaaataatttaga	Protospacer
      ****      ********** ** **********

13. spacer 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.765

ctatgttttttatctttgtgtttaat-tcctctac	CRISPR spacer
ttatcttttttatctttttgtttaatattagata-	Protospacer
.*** ************ ******** *.   ** 

14. spacer 5.25|2766614|34|NC_011837|CRT matches to AP014331 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C30, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.765

-gttcaacataaatttaaacatttaccattaaaat	CRISPR spacer
tcttctgta-aaatttaaaaatttacaattaaaaa	Protospacer
  *** ..* ********* ****** ******* 

15. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

16. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

17. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

18. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

19. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

20. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

21. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

22. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

23. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 8, identity: 0.765

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
actataatatatataatttacggaggtaattaaa	Protospacer
 .*. **  *********** ***** *******

24. spacer 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR matches to MN693675 (Marine virus AFVG_250M630, complete genome) position: , mismatch: 9, identity: 0.735

ctatgttttttatctttgtgtttaattcctctac	CRISPR spacer
ttctgttttttatttttgggtttaattcaaaaaa	Protospacer
.* **********.**** *********    * 

25. spacer 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR matches to MN693578 (Marine virus AFVG_25M520, complete genome) position: , mismatch: 9, identity: 0.735

ctatgttttttatctttgtgtttaattcctctac	CRISPR spacer
ttctgttttttatttttgggtttaattcaaaaaa	Protospacer
.* **********.**** *********    * 

26. spacer 5.17|2767667|34|NC_011837|CRISPRCasFinder,PILER-CR matches to NZ_CP017199 (Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-2, complete genome) position: , mismatch: 9, identity: 0.735

cctagttgg------gttattaatgcctcctttttctttt	CRISPR spacer
------tggcaaaatgttattaatgcctattttttctttc	Protospacer
      ***      ************* .*********.

27. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to DQ535032 (Lactococcus lactis phage KSY1, complete genome) position: , mismatch: 9, identity: 0.735

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
gtctaattatatataatttaaggagaaaattaaa	Protospacer
 *. .*   ***********.****.********

28. spacer 6.17|3511229|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NC_009817 (Lactococcus phage KSY1, complete genome) position: , mismatch: 9, identity: 0.735

tttggaaattatataatttagggaggaaattaaa	CRISPR spacer
gtctaattatatataatttaaggagaaaattaaa	Protospacer
 *. .*   ***********.****.********

29. spacer 2.4|2298888|35|NC_011837|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035936 (Acinetobacter cumulans strain WCHAc060092 plasmid p1_060092, complete sequence) position: , mismatch: 10, identity: 0.714

aattaccaatatttttacctaaagtttttaatctt	CRISPR spacer
catcaccaatatttttacctaatgtttcagcatct	Protospacer
 **.****************** ****. .  ..*

30. spacer 2.4|2298888|35|NC_011837|CRISPRCasFinder,CRT,PILER-CR matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

aattaccaatatttttacctaaagtttttaatctt	CRISPR spacer
catcaccaatatttttacctaatgtttcagcatct	Protospacer
 **.****************** ****. .  ..*

31. spacer 2.8|2299151|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 10, identity: 0.722

cagcaaagattatggaattataaggaggaaatttaa	CRISPR spacer
aattatgatttatggaagtataaggaggaaagttat	Protospacer
 * .* .. ******** ************* *** 

32. spacer 2.8|2299151|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 10, identity: 0.722

cagcaaagattatggaattataaggaggaaatttaa	CRISPR spacer
aattatgatttatggaagtataaggaggaaagttat	Protospacer
 * .* .. ******** ************* *** 

33. spacer 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to MG869623 (Polaromonas sp. W10N plasmid pW10NP1, complete sequence) position: , mismatch: 10, identity: 0.706

ccaaggatttaatagaagaaatacataatttaga	CRISPR spacer
ggttgcatttaatagaagaaatagatattttgac	Protospacer
    * ***************** *** ***.. 

34. spacer 4.5|2756988|34|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022346 (Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ccaaggatttaatagaagaaatacataatttaga	CRISPR spacer
ttcattaaataatagaagaaactcataatttagt	Protospacer
.. *  *  ************. ********** 

35. spacer 5.15|2767536|34|NC_011837|CRISPRCasFinder,PILER-CR matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ctatgttttttatctttgtgtttaattcctctac	CRISPR spacer
gatcctgatttatctttctgtttatttcctctat	Protospacer
   . *  ********* ****** ********.

36. spacer 6.12|3510901|36|NC_011837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015325 (Bacillus filamentosus strain Hbe603 plasmid pBEH3, complete sequence) position: , mismatch: 10, identity: 0.722

ggtaattcagtttctacaactccacattcttttata	CRISPR spacer
tcttcttcagttgctacaactccagattcttggctt	Protospacer
  *  ******* *********** ******   * 

37. spacer 2.11|2299347|36|NC_011837|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015111 (Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.694

ctaggatatgcatttttattctttttaataattctt	CRISPR spacer
agtaaaaatgcatttttattctttttagcaatttcc	Protospacer
   ..* ********************..****...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1803314 : 1839422 23 Leptospira_phage(28.57%) transposase,integrase attL 1800085:1800105|attR 1839901:1839921
DBSCAN-SWA_2 1932517 : 1988836 91 Clostridium_phage(36.17%) plate,tail,terminase,portal NA
DBSCAN-SWA_3 2603262 : 2679121 79 Erysipelothrix_phage(62.96%) tail,protease,capsid,integrase,head,portal,terminase,transposase,holin attL 2597746:2597761|attR 2676799:2676814
DBSCAN-SWA_4 2683522 : 2695592 12 Synechococcus_phage(25.0%) NA NA
DBSCAN-SWA_5 2860415 : 2897701 38 Clostridium_phage(30.0%) terminase,transposase,integrase attL 2884495:2884512|attR 2899248:2899265
DBSCAN-SWA_6 2914184 : 2956497 49 Bacillus_phage(25.0%) terminase,capsid,transposase,integrase attL 2914004:2914049|attR 2950160:2950205
DBSCAN-SWA_7 3021807 : 3027541 6 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_8 3081152 : 3128467 39 Tupanvirus(20.0%) tRNA,transposase,integrase attL 3075923:3075939|attR 3103297:3103313
DBSCAN-SWA_9 3219856 : 3289288 92 uncultured_Caudovirales_phage(33.33%) tail,plate,capsid,portal,tRNA,terminase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_011836
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 29193 31 Clostridium_phage(70.59%) tail,holin NA
DBSCAN-SWA_2 41996 : 58952 21 Bacillus_phage(21.43%) terminase,tail,head,capsid,protease,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage