CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008618	Bifidobacterium adolescentis ATCC 15703, complete genome	4 crisprs	WYL,csa3,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3	1	20	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008618_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008618_1

346352-346545

Orphan

Consensus_repeat	Method
GATCGTGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008618_1

>merge|NC_008618|1|346352-346545|CRISPRCasFinder
GATCGCGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCGCGATGACGATCGTGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCGTGACGATCGCGACTACGATCGTGACGACCGCCGTTCGTCCCGTTCCGATCGCGATGATCGTGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCG

>NC_008618|1|1|346352-346545|CRISPRCasFinder
GATCGCGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCG	CGATGACGATCGTGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCGTGACGATCGCGACTACGATCGTGACGACCGCCGTTCGTCCCGTTCCGATCGCGAT
GATCGTGATTATGATGATCGTCCGCGTCGCCGTCGTTCCGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008618.1\|WP_011742772.1\|330737_332384_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NC_008618.1\|WP_003807777.1\|323642_324422_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379258
NC_008618.1\|WP_041777233.1\|358775_359603_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133009
NC_008618.1\|WP_011742781.1\|354367_355879_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_008618.1\|WP_003807783.1\|328047_328641_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|376871
NC_008618.1\|WP_003807775.1\|322802_323495_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NC_008618.1\|WP_011742779.1\|352450_353314_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NC_008618.1\|WP_011742774.1\|341952_342411_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NC_008618.1\|WP_011742775.1\|342719_343397_+\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_041777234.1\|359679_360366_+\|pyroglutamyl-peptidase-I	unknown	unknown	gnl\|CDD\|238279
NC_008618.1\|WP_011742771.1\|328836_330741_+\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NC_008618.1\|WP_011742777.1\|347730_349953_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NC_008618.1\|WP_035010145.1\|355969_357559_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_008618.1\|WP_011742776.1\|347031_347592_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NC_008618.1\|WP_011742780.1\|353415_354093_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224198
NC_008618.1\|WP_011742778.1\|350020_352213_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NC_008618.1\|WP_011742773.1\|332458_341794_+\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|227315
NC_008618.1\|WP_011742783.1\|357613_358645_+\|laccase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376831
NC_008618.1\|WP_003807806.1\|343551_343821_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_008618.1\|WP_011742769.1\|326682_327633_+\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|223417

Protein	Function_ID	Function_description	E-value
NC_008618.1\|WP_011742772.1\|330737_332384_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NC_008618.1\|WP_003807777.1\|323642_324422_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	6.79485e-16
NC_008618.1\|WP_041777233.1\|358775_359603_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	2.02586e-73
NC_008618.1\|WP_011742781.1\|354367_355879_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	5.69967e-131
NC_008618.1\|WP_003807783.1\|328047_328641_-\|biotin-transporter-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	2.52602e-29
NC_008618.1\|WP_003807775.1\|322802_323495_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	2.74554e-138
NC_008618.1\|WP_011742779.1\|352450_353314_+\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	2.09278e-88
NC_008618.1\|WP_011742774.1\|341952_342411_+\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	2.1275e-25
NC_008618.1\|WP_041777234.1\|359679_360366_+\|pyroglutamyl-peptidase-I	gnl\|CDD\|238279	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.	3.72198e-51
NC_008618.1\|WP_011742771.1\|328836_330741_+\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_008618.1\|WP_011742777.1\|347730_349953_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	5.23213e-85
NC_008618.1\|WP_035010145.1\|355969_357559_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	6.76896e-113
NC_008618.1\|WP_011742776.1\|347031_347592_+\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.88102e-81
NC_008618.1\|WP_011742780.1\|353415_354093_-\|LysE-family-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.11975e-35
NC_008618.1\|WP_011742778.1\|350020_352213_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	2.85266e-84
NC_008618.1\|WP_011742773.1\|332458_341794_+\|type-I-polyketide-synthase	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
NC_008618.1\|WP_011742783.1\|357613_358645_+\|laccase-domain-containing-protein	gnl\|CDD\|376831	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase. Laccases are multi-copper oxidoreductases able to oxidize a wide variety of phenolic and non-phenolic compounds and are widely distributed among both prokaryotes and eukaryotes. There are two main active catalytic sites with conserved histidines that are capable of binding four copper atoms.	8.72976e-70
NC_008618.1\|WP_003807806.1\|343551_343821_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	9.54707e-57
NC_008618.1\|WP_011742769.1\|326682_327633_+\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	1.19661e-35

>NC_008618.1|WP_003807806.1|343551_343821_+|30S-ribosomal-protein-S15
MALTAEEKQEIIKTYATHEGDTGSPEVQVALLTKRIADLTEHLKEHKHDHHSRRGLLLMVGDRRRMLDYLKRVDINRYRSLIERLGLRR
>NC_008618.1|WP_011742775.1|342719_343397_+|hypothetical-protein
MGQKERNKATEVVDGVVETVDVSKHPTASIEPSDLSLADIERRKSHPVRWILFMALVLLAMIAPYWWGRDIAVRDASWMVANLNFLDPKGVALISWTVTIVALTGLGLMVADAKKWLWGTIFVIGLAAEQFVAGMCLLSFNFWNATYVMYGEAAGLANAANLGIIAAGFGVAVYAVLWVGLLVCIKKESKLNVLTRSWASFLLFFAIELVALAVVLFGGLLMSMA
>NC_008618.1|WP_011742774.1|341952_342411_+|holo-ACP-synthase
MLGLGHDVVDVPAFAKQLNEPGTRMRNLFSMREIWQTAQRSQLKHDDEAVHLAARWAGKEAFLKAWCAAISRHAKDGAEVAYPYTLDNFPWVRIEILDDSHGVPRVILSSEVQRKVQQSLGLPLDPVCQSYDISISISHDGPIASAVVMLEI
>NC_008618.1|WP_011742773.1|332458_341794_+|type-I-polyketide-synthase
MNTFFLDRLNSEPHALAFAGQSTPWPVALADQSANPALDEVLHTHAAAAQALLYPVSAELLATTGRPVDLFGFEPNPARLGAAAAASASVPGIALTQLGALLDAAALGYNPAQAKPVVVLGHSQGVLAVHMVQAICEAGSIDAAAAKIDEILAIATLIGVAGTRQARQLGLAARHGEATPMLSVKDITRAQVDALIERVDGARGPIAVAVTNSATHYVLSGYPEDLAAFGVEVAKEHKRQAKLREEKVRGGRVFDPTLEYLDVTLPFHSPLMADAVSQAVAWAEACGINADHARELAAEVLLNHVDWAARVRALMKSTDPSALWVLDFGPGNTVGKLFSTVAQGTGVGVVEASTVADRGALSTLETLPERTQNWTRFAPSIIHTSAGDKVRTAFTELTGKAPVLLAGMTPTTVEPEIVAAAANAGYWAELAGGGQVTASVFDRHVAKLEEELEEGRTVEFNAMFMDRYLWNLQFGSQRIVPKKRASGTPIDGVVVSAGIPEFDEAVELIHNLNADGFPYVSFKPGTVDQIRQVVRIAKAVAPTKVLIEVEGGSAGGHHSWESLDDLLLSTYAEVREQANLVLVVGGGIGTPERGADYITGEWAAEYGRPLMPVDGVLVGTAAMTAKEAHTNPEVKQMLVSTPGIPAKGDDNDPFAPLGEQWVPSGQAKGGVTSGLSHLHADIYELENSSARCGRLLVRVMKHPEELESRRDEIIAALNATAKPYFGDLKTMTYLEWAQRFADLSFPWVDETYADRFLHLLQRIEARVTTQESGEFASLFASRADVEADPNAAIAKLAETYPQAGKLTVTPMDEAWFPVLVREYPKPMPFVPVIDNDLLRWWGQDQLWQSEDSRYSADSVRIIPGPISVAGITTVDEPVADILGRFEAAMVKRVSAESASADKTAFAQLGAAVSAEEFIRKSPNISWVGHLMANPAYGTANGDANYEIRKVAVEGSVEKYDLDIHLDTFWDNDPDGGASKHAVRDIVIPLNVDGNESGLFPVVDRDRLPEHVYRMLADTAGIGNTAITGDKLTAMPQIEEVSDKTAFPFGQAHTGYTLSANLGFDHEAATGGALPSDLVPSRIAPDALVGPAWPAIYAALGSVYVNGFPVIEGLLNAVHLDHLIELEVSEDELLKHTGERIELTSWADDYFESASGRVVTIHVTHTAQDGTLLANETERFAIRGRAYSDALPPEAPDYGGIEAEIESTPRRLLRRVKVVAPHEMTAFARTSGDFNPIHTSHRGAAVSGLAAPLVHGMWLSATAQYAVQALDEKGAHYEIAGWTYNMYGMVQLDDEVEISIERVGRVAHAGMVLEVTSRIDGNIVSRGTAIVRAPKSAFVYPGQGIQKQGMVLDERAKSPAAREVWERADKVTREKLGFSILAVVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADIWPAYFAGHSLGEYNALSSFAGVIPLETVLELVFHRGSTMHHLIPRDEKGRSNYRMGALRPNQFGVGDDGVREYVESVSKASGEFLEIVNYNLAGQQYAVAGTIAGLKALKADSARRVAEYGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPKHIDYRGRLVGRYIPNLVAVPFEMTKEFAAKILEVVPSERIKAALDDPKVWDSYAEDDQKLGRLLLTELLSWQFASPVRWIETQALLFGSAEQGGLGVEEYVEVGLGNAPTLANLGAKTLRLPQFAGRDVTVYNVGRDEGRVYMTDSDSLVADDDADDSVAAPAAASAPAAAAAAPAAVAAAPVAAAPAAAAPVAPAGAPSGAAVADIPFNASDAIAMLLAYSAKVRPDQIGESDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATVKALSALVDKVAPNYKAFGPVLSDIVRDRVRGLFGAAGVKLGQITKRVTDTWQLGEGWASHVVAALVLETREGASSRGGDLASLSTEAASNAAAANALIDAAVQKVASDKGVAVAMPSAGGAAGGAVVDSAALDAFAAKVTGADGVLASTAKFVLNQLGVTASVADDSADENAAVVAAVEAELGSDWPKQVEPRFDERKAILFDDRWASAREDLSRAYYDNDASALDGSFIGLGKAVADEAAWYAGKTADVELAAAFKRVADEALEQTNDSAEASRFAGDIAVVTGVAPNSIAAQVVNGLLAGGATVVATSHSFRQSVKAWAKQTYREHAAGDAKLWLVPANLSSYRDVDALVAWVGNVQKKTSGATTTILKPAYEPSLFFPFAAPPVHGTLADSGELFESQARLMLWGVERAITGFAKIGADTDVQHKLHVILPGSPNRGVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVEVVERHGLKTYSTAEIAVKLLELSTKESREQAVKAPLDVDLTGGLGSEPIDIKALRAEAMEDAAKAAAAEAGDEDKQGDCAAAATLIKALPSPRAPRQAKVDLKDWQHVTARPEDEIVIVSIGELGPWGSGRTRFEAELGIHSDGKVDLSAGAVLELAWNMGLLTWNDSPKPGWYDTDGNLVPEEDIAERYHDEVVARSGVRPFEEGMGNDYKDGADEEEAEVFLDHDVTFSVPTREIAEEYVKLDEAHTSYAADAESGEWNVTRHAGSMIRVPRRAAMTRTVGGQFPKGFDPVKWGIPASMVGDVDKIALWNIVTTVDAYLSAGFTPAEILEAVHPSMVASTQGTGFGGMASMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGADKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYAKGIDARFFSRANDRRRGGFVESQGGGTILLTRGDIALKLGLPVAGVVGFVHSYADGAHTSIPAPGLGALAAGMGGKDSKLVHDLAKLGVTPDDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKSLTGHAKGGACIFQVNGLTQLFKSGVVPANAALDCVDPKLKRDDHMVWLREPLKVGSVKAGLATSLGFGHVSGFAAIVNPGAFEASVANTAGEDALNEWRDRANARLAAGQRRLEEGMMGRAALYEPIDNRRFHEDGRGYDAHEVEKAMLLDPNARLASTGYFEA
>NC_008618.1|WP_011742772.1|330737_332384_+|acyl-CoA-carboxylase-subunit-beta
MTDIIASPAVKEAVKVVMEQQERLGDEAAAEARESQPIRTSVLRAAQLAAEAEDHARGRQHVKGKLTARERLDLLLDTGSFEEIGRFRGGDINGGRAGSAVITGFGEVFGRKVAVYAQDFSVKGGTLGVAEGRKICHLMDKALDLKVPIIALIDSGGARIQEGVAALTEYGHLFRKTCDASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKAATGEVISMDDLGGGYVHNATSGVAHYLGEDEADAIDYARTVLAYLPSNSDQQPPVYAYAATRADRDVAKRLATLVPDNDRQPYDVLDVIRCIVDYGEFVQVHELFAASAVVGFACIDGHPVGIVANQPNVNAGILDVDSSEKVARFVRLCDAFNLPVVTLVDTPGYKPGAEQEHAGIIRRGAKVIYAYANAQVPLVTIILRKAFGGAYIVMGSKSIGADMNFAWPSSQIAVLGAAGAVNIIHRKDLQKAKDNGKDVEALRAKYIADYERTTVNANLSLEMGEIDAMIDPEQTRETIIESLRLLASKKRVRRTSKHHGNQPL
>NC_008618.1|WP_011742771.1|328836_330741_+|ATP-grasp-domain-containing-protein
MPKNVNKLLVANRGEIALRVVRTAREMGIPTVAVYAEQDRHAQYVQMADDAYLLSGDTYKDTYLNEDLLIDILQRSGADAVHPGYGFLSEVASFAQKVLDAGATWVGPNPKALVDLGDKITARRVATFAKVPPVPGISQSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVHNDDELRGFYMNHDALQGGDLDEYFVERFIDKGRHVETQCGRDSHGNFTVYSTRDCSVQRRNQKLVEEAPASFLPDGVLEQLETYSRRLFDAVDYVGLGTCEFMVTEQGKVYFLEVNPRLQVEHTVSEEVCGLDLVREQLTIANGGELTVDHPLRGHSFELRLTCEDPAKNLAPSSGTLTKLAWPSGPGIRVDSGVVEGDTVSPKFDSMMGKLVVTASDRATAVARVRRALEELKVEGVPTPASLFEQIFNDDEFTAEHGVAYDVSTKWLERKYLNKEASSTKGGQPASMAGASGAKEAEQKESSETFVIEVNNHRVSLTVPNDIVANLTGGAKARDAKRAIQPLRGQGLHHVEKKQQGNDGQSGVIASPMQAVVTRINVVEGQDVAKGDLLVVLESMKMENYVYAPVKGTVTKIFVGPAAGIEAGETLMTIDVNGASKAADGKPATDGNTETKTEGGAK
>NC_008618.1|WP_003807783.1|328047_328641_-|biotin-transporter-BioY
MRNAILTISSAAKTATSGKFGAVLKSTLFAVLLAAASMAGAVPIPGTPVPITLQTFVVMLAALMLPWKQAGAAVLMYLAAGAAGLPVFAGGASTMALVGPSAGFLIGFLPAAVVTSLLKGKARVDSPKHAALTAARYLFACVAGCIVLDYLLGFIVQSAITGVAMPVVAIASMGFIVGDCIKAVVASLVASGLAKLQ
>NC_008618.1|WP_011742769.1|326682_327633_+|biotin--[acetyl-CoA-carboxylase]-ligase
MTTILDSALTMPRTCVAADQVIALDSVGSTNTYAAELVRKGALFGSARRDGLDGCDGRDWTGREIVAICADEQTAGRGRLDHQWTSAVGESFIVSLVVSVPTAIVRDTSVNGWLQMIAGCEARNAIIAAIRDCGGPLGKDIVLKWPNDIFVDGKKLGGVLAEMVPLAATPIADGATGTTDVAAATERVGIVFGIGLNLTVPEDHLPTDKATSLQLVAHGLPDSMTLRDMIAAHLVDGLRSRLADFEADPHREATRAMEEMRPVCWTLDKPCEAHFVDGTTLRGTALELNPDASLTIRDDNGNLHTVHTADVGVLPQ
>NC_008618.1|WP_003807777.1|323642_324422_-|helix-turn-helix-domain-containing-protein
MNSEQADILDLLSGHTDDTTIERLAFECLLTNMTDDRVVSLMNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQMGAVTPEVTCTAVMPAFSEDEPLYLSPVRSGVAGASHALRETMFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRMRDR
>NC_008618.1|WP_003807775.1|322802_323495_+|50S-ribosomal-protein-L1
MVQRSKKYREAAEKIDRNNLYTANEAIALLKSMPEYKFDQTVEAVLRLNVDPRKADQLVRGSVNLPNGTGKTAKVLVFARGPKATEALEAGADIVGDDDLVQKVADGFLDFDSVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAIKDIKGGKVDFRVDKNGNLSFLIGKMSFTEQALDENFKAVADEVKRLKPSTVKGRYVTKATITSTMNPGVPVDPAVVA
>NC_008618.1|WP_011742776.1|347031_347592_+|LemA-family-protein
MIVAIIIVVIIVLVLLWAMSAYNGLVTLRNRVKNGWAQIDVQLKQRADLIPNLVETVKGYAAHESNVFTQVTQARAGVIQAAQSGDVQQRIQAENQLSRALVNLQATAEAYPQLQANQNFMDLQGQLKGLEEKIAYARQFYNDVVQKYNTKIEVVPTNIIAGLFHFEQAAYFQVDEADRQAPQVKF
>NC_008618.1|WP_011742777.1|347730_349953_+|DUF2207-domain-containing-protein
MNIRRTLVSLLSTIVVTLTMLGIVLINAQTSDEEPDLSYRTLDYDVAVQRNGDLKVTQHIDMRLKDRGRDWKQMYQRYTLKSKNLTDISDIGVKDVSNGETYRQGDFVFPDNADNWNDEHAGRWYIVDVTEDENDPQPFNPQTDGLSDDGQADKTLEIGWNIPQTVSEDSLKFDVSMTLHGVSTAYDDVVSFQWEPFGEENQIPIGTVTGKVTFPNGINGKNSWAWLHTKNTSTTNRGDNGSLMFSANDVRAGDYLDVVAMFDASQAQGVARTKSGAYKQRLIDDETKQEREWRSSQHTKAVKRVAGWIFAALIGIALAVAALYFAIVSFRKSQYKGDIEYWRDLPDLSPAAAAKMEDIMSASSSIFGSGKTKNADKLANRQMSATVMSLASKGAIAIYPGPVDLYNGIDLTTTSAASVAGMLGSNAASARKLKKTSTIAIMPVVCDDIGSLLLSSSERAVLDILLKASSRLHDAQVFDLKQMSKAFKHYSSGYKLLETFDNACSMEFDDLHAVKPMGLLSYLFSGLGIAFAFFLALKYVQDGELAVALVVCVPVVALCAFAAAYGKRYVLTDEGQRYGGQVAGLKRYLTDFSDFTDRGVLDMTLWGRYMVYATAFGISKKAMAQLARAYPEVADPQWLDEHAGTSYMYMPLRSSSLLGASVGTSLGASTIDPAAFSANFGDLGAQLSSSFADVRSTISAAAPSSSSGGSGSSGGSGGSFSGGGFGGSSGGSGGGSFGGR
>NC_008618.1|WP_011742778.1|350020_352213_+|DUF2207-domain-containing-protein
MNGKRYGRGLIAAFSALVAVVAIILAVFVISGDEADLSYRSVDFDARLQSNGDIRFTEHLDYQLKRREDGNGDTKPWKQLYLTFKLRNQDLTNITDISVTNASTGEEYTQTDPQLPSGISDGTWDSTYAGHWYIADTTAGSDSPQPFDPTTDGIDPNGSGEQKNIEIGWNIPATVKQSSLKFDVSMTFHDMGTRHSDVTNLMWEMFPENNQVPAGKVTGTVRFPKGIASNNSWAWLHTEATSQTSRDADGTLHFTISDLRTNQYVDLVAAFDNTGAAGVERTQSGDYLDELKSTEAAKERQWRDRQRLKAQLTVAGWLICLIIGVLCCVLAIRGVLSANREARYQGGIEYWRDPPQVSPAASAYLIDVVDESVGDRSSRAMTATILALVVKKALAVYPGPSSLYQGIDLSQANASDLARMIASDPNRAKATASSSTLVIMPAALSHRNTLGLSQSEEACLELLIGISMRVGSPVFDFNQMDTACSDWEEGYQSLNRFKSACGLEFGALGAVKSVNGRWLVPSLCLMVIGAIGIFANGASNIAMALCLGVPFICIGVFCMAAGRSEGITERGQQYAGECLGLKRYMEDFSNFSNRGALDLTLWNWYMVYAAAFGISEKVAREFARAYPEVNDPQWLDTYGYDSLGYWTYRSQAWNGPINTNGMMPGGMYGGTQFMGGVGDIGSQISSGFASVSSTISAAAPSSSSGSGGSFSGGGFGGGGGGGGGGGGGGR
>NC_008618.1|WP_011742779.1|352450_353314_+|aldo/keto-reductase
MTLFRDLGPFHTTAIGHGEMPLTIENNRGHDVGIETLHASLDAGCRHIDTAWAYYTPGEEEQTGEKLVREALETWKGPREEVTVATKVGLRRAWDGDKPIWPRDGKPEHLIEYGKQSAQALGVDSIDLLYLHRHDPEVPYNESCEGIKALLDQGVAQWAGVSNVSIEQLKIAQEILGDKLVAVQNQYSPIHLETQDTLEYCAKEGLAFVCWSPLGGYRHPYDEHLFDPFREVAAKHGVSYQRVVLAWELAKGDHMFVIPGAHRPETILDSLKADELELTDEELAFLG
>NC_008618.1|WP_011742780.1|353415_354093_-|LysE-family-transporter
MGFFFQGLTLGLAYVAPIGMQNLFVIDSALTKPRRRALLTALIVLFFDVSLSLSCFFGIGKLMQDHAWLKLAILAIGGLVVIRIGAGLLFPGKGGDDGAAQTPQSQTSQSQGLAQRVTSKFGGDSELLHTIVTAGVVTWCNPQAIIDGTLMLGAFSATLTVGQSTPFITGVETASALWFFGITLLVSLFSHKFSPRIITAMNRVCGAVVVLYGVKLLADFAMAVL
>NC_008618.1|WP_011742781.1|354367_355879_+|PLP-dependent-aminotransferase-family-protein
MARIAPLNIDWKPDRTTGEPVTEQIVGYMCEQVHSGNWPIGSRLPSQRALAEWFGVNRSTVIAAINELSDYGIVEGQHGAGTRIVSNTWSLMLPGAPDWADYVDSGFFKANNDTIQAINRYEFTPNMTRIGTGELDPRLFPKAMWRQVLGEAADEIETLGYPPPEGLPELREAIAAHMRATGVDCTASQVLVTSGALQALQMISVSLLPAGTTVYAESPSYIKSLQVFQSAGMHLEGVPMDDDGLNVQALRGLLAEGELDTGRPAPLNARNRKGNAILYTIPTNHNPTGVTMSDKRRHELVELSVDSRLPIIEDGAYRDLYFEDDAPLPSLKALDETGMVITLGSASKSLAPGLRIGWLVAAEPIVQRLADVKMQMDYGASVLSQWTFARFLTNGMYDEYVAGLKRELRHRRDRALVTLQEKMDGLAHWNVPSGGFYIWMTFDRPIRMNRLFQLAAERGVLLNPGDIYDFAADNSLRLSYSYTTPEEFADAVDVLAAVARELA
>NC_008618.1|WP_035010145.1|355969_357559_+|U32-family-peptidase
MQRRNKPEVLAPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGARYAHERGARVYVTFNVLPRNNEVEAMREYLGKLKDTGVDALIVSDIGVMLMAKQVAPNLELHVSTQAGVTNYQAANAFYELGARRVVLAREMDLQAVRDIRARIPDDLDIECFVHGAMCMAFSGRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTAEGAYLFNSQDMNMLAHIDDLLDSGATSLKIEGRSKSAYYIAAMTNAYKTAVNEYMVQRGFEDADGNVLKPFRDRVIRPGDPEYGKPDTEDAIMANADGAFAGKPDIDAVPVGGVPSGNVSAGNVSSGNIAIGEPDNLSYHARSTRRKSNTAAEILPEGWHHAGVRPAPHVTLPDWLLDEPDKVAHRDYSTGFYYPEHKVRQSTDRSAYFRAWLVVGEVLSWSPEDGGRVTIMSRNKIEAGQEVEFVLPGAAPFAYTVPAGGFRDADGHWVEAINNPAHVFSMPCPQEVPVNAAIRSRTKKPTLKAE
>NC_008618.1|WP_011742783.1|357613_358645_+|laccase-domain-containing-protein
MSSTQYDDAILDSNAIDPTDKNGNPIPVTIPIMLAPGIKVVYTTRLGGTSEGDFAHFNLGGKSGDKPEHVLANRKALADVLGAKISLISQVHSGDAVDVDESFVINQPFGFDVSGTKKPEDETDGENNATGNDGEPTVIEADGQVTSRKNVALGMFAADCLPVLMADPEAGVIGAAHCGRRGLQKGVIGATIEKMVSKGAQPERIVATLGPCICGDCYEVGGDIADEFDAQFPGTFTLSRFGQPGIDIAAAALQELAKAGVPADNIVSSRPRVNAATQYLSEDEELAGICAADGEGDPKLSERFNKIRRSLCTLENPLWFSHRRASLAKKQHEGRMLALIVRE
>NC_008618.1|WP_041777233.1|358775_359603_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MSKGEQMQEQKMPVVAVVLAAGFGTRFDENNPKQLVSVGGKPIVCRSIEAFENNDRISDIIVVVNERVEETVNELIDEAGYAKVRAIVPGGAERVDSTLAALDLLKQAGIPSGAKILIHDGVRPFVEERSIDGCIDSLDQFNAATVAYASTDTILLTEDLGDRKVVKSVPERPNTFRAQTPQAFRFGTIVKAYELAAADPDFHPTDDTRVVVDYLPDEPVAIVDGSETNLKITTPSDMPIAEGIARSLDPEHAKEEAKARMHAVFAEAFSQMHSR
>NC_008618.1|WP_041777234.1|359679_360366_+|pyroglutamyl-peptidase-I
MQQINIVISGFTPYEGIDVNPAVLVPAAVAKQWGDPAQSQAISEELLQDIAVTVTNVTLPVSFAKAWPTLLEAIEQAKPDIVIATGLKRTSRGILLERCATNLMDAAKPDADNVIPPRRPIDPEGPAAYWTRLPLRSILHDFAKHEIPAALSSDAGTFVCNSLFYHLLNWSAGQERRILSGFVSLPIVNGRPHERGLPIEQQTAAVDDVLRESVRYFLQPSSSDILLG

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Crispr_ID: NC_008618_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008618_2

445192-445305

Orphan

Consensus_repeat	Method
CGTCCGGGTCAGGGCGGCGGCCAGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008618_2

>merge|NC_008618|2|445192-445305|CRISPRCasFinder
CGTCCGGGTCAGGGCGGCGGCCAGCGTGGCGGCTTCCGTGGTCGTCCGGGTCAGGGCGGCGCGAAGCCGGGCCAGTGGGGCCAGCATCGTCCGGGTCAGGGCGGCGGCCAGCGT

>NC_008618|2|2|445192-445305|CRISPRCasFinder
CGTCCGGGTCAGGGCGGCGGCCAGCGT	GGCGGCTTCCGTGGTCGTCCGGGTCAGGGCGGCGCGAAGCCGGGCCAGTGGGGCCAGCAT
CGTCCGGGTCAGGGCGGCGGCCAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008618.1\|WP_011742837.1\|449075_450305_+\|adenylyltransferase/cytidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|235536
NC_008618.1\|WP_004268639.1\|452822_452912_+\|AURKAIP1/COX24-domain-containing-protein	unknown	unknown	unknown
NC_008618.1\|WP_167524189.1\|442316_443009_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_011742831.1\|437828_438749_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|211337
NC_008618.1\|WP_011742836.1\|447935_449006_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_008618.1\|WP_011742833.1\|441210_442011_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NC_008618.1\|WP_011742830.1\|437254_437722_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_008618.1\|WP_003808157.1\|443278_444331_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NC_008618.1\|WP_003808136.1\|434976_435090_+\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179039
NC_008618.1\|WP_011742839.1\|451994_452648_+\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_011742842.1\|453966_455304_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|260010
NC_008618.1\|WP_011742832.1\|438925_441106_+\|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl\|CDD\|379601
NC_008618.1\|WP_041777246.1\|456798_457614_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_008618.1\|WP_003808141.1\|435688_436087_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NC_008618.1\|WP_011742843.1\|455408_456797_-\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|340412
NC_008618.1\|WP_011742841.1\|453046_453745_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_008618.1\|WP_021913098.1\|436167_437166_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_008618.1\|WP_003808138.1\|435226_435604_+\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NC_008618.1\|WP_011742838.1\|450435_451854_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_008618.1\|WP_003808161.1\|447448_447952_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787

Protein	Function_ID	Function_description	E-value
NC_008618.1\|WP_011742837.1\|449075_450305_+\|adenylyltransferase/cytidyltransferase-family-protein	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.35759e-71
NC_008618.1\|WP_011742831.1\|437828_438749_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	2.54714e-93
NC_008618.1\|WP_011742836.1\|447935_449006_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	3.19119e-107
NC_008618.1\|WP_011742833.1\|441210_442011_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.2979e-26
NC_008618.1\|WP_011742830.1\|437254_437722_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.83227e-60
NC_008618.1\|WP_003808157.1\|443278_444331_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	9.89204e-151
NC_008618.1\|WP_003808136.1\|434976_435090_+\|50S-ribosomal-protein-L36	gnl\|CDD\|179039	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.	2.59051e-13
NC_008618.1\|WP_011742842.1\|453966_455304_-\|ribonuclease-HI	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	2.94738e-58
NC_008618.1\|WP_011742832.1\|438925_441106_+\|circularly-permuted-type-2-ATP-grasp-protein	gnl\|CDD\|379601	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2. Circularly permuted ATP-grasp prototyped by Roseiflexus RoseRS_2616 that is associated in gene neighborhoods with a GCS2-like COOH-NH2 ligase, alpha/beta hydrolase fold peptidase, GAT-II -like amidohydrolase, and M20 peptidase. Members of this family are predicted to be involved in the biosynthesis of small peptides.	0
NC_008618.1\|WP_041777246.1\|456798_457614_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	3.38066e-21
NC_008618.1\|WP_003808141.1\|435688_436087_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	1.75912e-80
NC_008618.1\|WP_011742843.1\|455408_456797_-\|GHKL-domain-containing-protein	gnl\|CDD\|340412	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.	3.53977e-25
NC_008618.1\|WP_011742841.1\|453046_453745_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	1.07732e-120
NC_008618.1\|WP_021913098.1\|436167_437166_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	0
NC_008618.1\|WP_003808138.1\|435226_435604_+\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	4.95913e-76
NC_008618.1\|WP_011742838.1\|450435_451854_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_008618.1\|WP_003808161.1\|447448_447952_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.42549e-40

>NC_008618.1|WP_003808157.1|443278_444331_+|transcription-termination/antitermination-protein-NusA
MELDLAGMHQLAAGQGIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPGEPTEDDPHPAPTLGEEYDDTPHDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKGKLITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMAESADHSDGETEE
>NC_008618.1|WP_167524189.1|442316_443009_-|hypothetical-protein
MAHDQHQHIIRRYFSAQQAVSAWTNTAAQCPARFAEGTLRSAQARHMARALGDQLSVAVAPITLSRFDDVESLDVDSKSLATAAQDEDRAGFAMEVLAARNSGHATLDISDRHKTTSQRFASFSGAIDDRRKTYEATALLAHPDTMLDSATGLTAPTDATIEMNCARSEITAIAGSSNAANDHSQSRVTNAKQSTDSRAQSLGVLAGLIADRVELALDWGYPSFDEALFA
>NC_008618.1|WP_011742833.1|441210_442011_+|transglutaminase-family-protein
MKKLVFDYEMKLSFSSPVTDHRFQLRCIPATGPRQQVIDVAVKIEPDVELETTIDSFDSVVMTGFIPEPHTMFNYSVTGIAFVDNAHIKSEIYKPLYRFNSALTVPGPAIEALIGICHERIVSLPADCTPIDQAREVMDEVFKTFVYTPASTTIRTTAEEAFAQRKGVCQDYAHVMLSVCRHVGLTARYIAGLLGGEGATHAWVEIYHDGRWVGLDPTHNRMVDDNYITIAHGRDYRDCMLDIGIFSGCDVKQDQWVNASVHEQGY
>NC_008618.1|WP_011742832.1|438925_441106_+|circularly-permuted-type-2-ATP-grasp-protein
MIESAARRLASELVDRRESINRELSRNGVRFGIYKNGEYHDRLFPYDPIPRIIESDEFDRMEAGLKQRVNALNAYLRDIYSDKQAIKDGIVPEEYVYTSAGYFPQVNGVTPPGGVFAHIAGEDLVQGQDGQWWVLEDNLRIPSGASYLLFARDIERRITPSLFRNVRVRDNRDYPRLLRQSMDFVSTDGIAVVLTPGRYNSAFFEHAYLAEKTGAALAFPEDLEVVDNKVYFLDYAGRKHRVGVVYRRLSDEYLDPFAFNPDSVIGVPGILSAYRSGNVAIVNAPGNGAADDKAIYYFVPNMIRYYLGEEPILHNAPTYMPMFDKDRKEVLDRLGELVIKDVAEAGGYGVVFGSSLDRSQREELAERIKAEPRRFIAQEVIQFKDIDVVDPETGQMSSRKCDLRAFVVTGKNTHAWYSGLTRYSSIPGQMIVNSSQGGGFKDTWVLAKETGVEHDYAPGSEVVRVLEQSRKHSLALVTASKADNLFWLGRYTERVFTTLSQFFPFYDRVMDTDVDAFRPFARALDLPEDFEDFDAFIHSFLYDEKNPDSVRSAIVYAFNNAVILRPELGSRSLQQVELAMSSIVEASEYGGTDADIFKHRDIADNMLAFWGGVENSPVEPTLKSFIFVGKYLERLDLYTRFGYSVEELKAPLAKLGSYILPLNGLPVPQCFAEGLRWLVGQLPQRGYAELAEKLGMLLKDFDGRISTKDLKDLGMLNTMDMDAARL
>NC_008618.1|WP_011742831.1|437828_438749_+|tRNA-pseudouridine(38-40)-synthase-TruA
MLNAVRLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVAGRTDTGVHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPDGFDARFSALERTYVYRIADRSSEVDPRTRNFVLHIDDELDLKSMNEAAAMTIGLHDFGSFATPNPGGTTIREVKTAYWRRVPQRTLIDDGMTMGERYRTPTVESGLVCFVIVADAFARNMVRSLVNGCVQVGIGKRSLDWFAGKMAAPLREGSTGPIAPQGLTLEHIEYPADDQLAVRAEAIRAKRTL
>NC_008618.1|WP_011742830.1|437254_437722_+|50S-ribosomal-protein-L17
MPTPKKGPRLASSPAHERLMLANMATSLFQNGRITTTLPKAKRLRPLAERLITLAKRGDLHNRRRVMRVIRNKSVVHKLFTEIAEQMEQREGGYTRIVKIAPRRGDAAPAAIIELVTEPVSPKQAVVKEAEAATKVAAAEAPEAAAEEATAENAE
>NC_008618.1|WP_021913098.1|436167_437166_+|DNA-directed-RNA-polymerase-subunit-alpha
MLIAQRPTLTEESLNPQRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRISGVPHEFTTLPGVEEDVTEILLNIKGIVLTSEYDEPVVMYLRKSGKGEATAGDITPPAGVTIANPDMHIATLAEDGELEIEFTVERGRGYVPAQMNKQDNAEIGRIPVDSIYSPVLKVSYRVEATRVEQRTDFDKLILDVETKPAISPRDAVASAGSTLVELFGLCRELNTQAEGVEVGPAPVAEETNPEMNIPIEDLNLTQRSYNCLKREGIHTIGELVAHTEQDLLDIRNFGMKSIDEVKEKLQSLGLALKASPLGNFDANNLEGGTFFSPEDE
>NC_008618.1|WP_003808141.1|435688_436087_+|30S-ribosomal-protein-S11
MAAQKQAARKPRRRDRKSVPVGQAHIKSTFNNTIISITDPSGAVVSWASGGDVGFKGSRKSTPYAAGMAAESAARKAMEHGLKKVDVFVKGPGSGRETAIRSLQSAGLEVGSITDVTPQAHNGVRPPKRRRV
>NC_008618.1|WP_003808138.1|435226_435604_+|30S-ribosomal-protein-S13
MARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGINPDIRVKDLTDEQLITLRDYLEGNYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKKKATK
>NC_008618.1|WP_003808136.1|434976_435090_+|50S-ribosomal-protein-L36
MKVSPSVKRICENCRVIRRHGRVMVICVNPRHKQRQG
>NC_008618.1|WP_003808161.1|447448_447952_+|30S-ribosome-binding-factor-RbfA
MAGTNPRAARIAALIQRVIASSMEAQLHDKRLANVTITEVRVTNDLQIAKVYWTQLGHEGHEQGERRRAQQALNQAKGRLRSLVGTKAGLRLTPQLEFIFDEVPGEAHEIEDILALAHKRDEELAKSRANAQYAGDADPYKHDEPDDDDFDDDDDVEVEDWDDDDEA
>NC_008618.1|WP_011742836.1|447935_449006_+|tRNA-pseudouridine(55)-synthase-TruB
MTTKPDNSGLLVIDKPQGVTSHDVVAAVRGALHMKRVGHAGTLDPMATGVLVVGFGNATRLLNYIVDHDKTYLATIRLGQRTTTDDADGELLPGEGTIAEFPSRQTVEDVIAHHFTGRIEQVPNSYSAIKINGQRAYDLAREGKDVDLKARPVTISEFSVSAVRYGYASTTCAGSPLADAIEIAPEESWHAETDGQNEPNMQPVMELDVTVTCSAGTYIRALGRDLGAELGLGGHLTMLRRIRVGRFSVNMPNVMTAHTEAKTFTNREGIEVTRNRAVLDDAEHAVDHALDLVASAAASMDMLPVTEQEATDLRFGRRIAHDIHTTMAAYVPETNDLVAIVERAKRGETKPVAVFN
>NC_008618.1|WP_011742837.1|449075_450305_+|adenylyltransferase/cytidyltransferase-family-protein
MKTITLTPDASGMVDWPTLSNDKKSVVTIGSFDGMHQGHQAVVRRVAELAEQEQAFSVVVLFDPRPALVHAYAAKHDGQEPPAGTPDTQALTSVNERLRAIDAIGVDYTLIVRYTMAFAAKSYRFFLGQMVGKLGMRTLVLGSDAAMGANRAGNVKAIENLALATGVFQLEVVDDFGPGLTRVPVNAKPVMPSEPGEPSDPLEGASKAERRAWSKKHQAKEVRTWSSTNVRYLLSQGRIKDADAILGHAHAVEGTVVHGEERGRTIGFPTANLSENVAGYLPVDGVYAGWLVDLGEKSADGGEEAGEKPADGVSQQYDASSVNARVDMQSPHRWPAAISIGTKPTFNEDGDAERVVEAYAITDDWLDLYGHQARVEFAGFLRPQIKFDSADDLVVELKRNVEETKRLTA
>NC_008618.1|WP_011742838.1|450435_451854_-|DNA-repair-protein-RadA
MAKTSSQFLCSECGWSGPKWLGRCPECGQWGTIEEFHEARPAAGSRTAAPGRTSRTQSHPVASSAARPITDIGTENISRIATGFSEFDRVLGGGIVPGSVTLIAGEPGIGKSTLLLETAGNVARLTAFATERNTVLYISGEESQAQVRMRASRIGAMEPNLLLASTTDLSTVLGLIEQFKPALAIVDSAQTIVSQDVDGISGGSTQVREVASALIDTAKTLDIPVLLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDAETALRMLRAVKNRFGPTDEVGCFDMSGEGIEEVTDPSGLFLSTGNGSAATQVDGTCVTFTLDGHRSLPIEVQALVTKSVLPTPRRAANGVDSNRIAMLVAVLYRHGGINLLANDLYISTIAGGQAREPGCDLAIVAALASAAKSKPIPRTTCAIGEISLTGQVRPVPRLEYRLREAARLGFTTAVVPTLRKNVAVPGMGVVQADTLQDALAAILR
>NC_008618.1|WP_011742839.1|451994_452648_+|hypothetical-protein
MTSMSDTQNSSSHGKLIAAVVAAALVVVLALISAFVWPGWALNKNGQAGQAGQTSQQASTSNGTDGDKTEPAKPSIDAVALPDGASELLKAMPDSVLNYARTKADASTTWSSTSPVEEYALTYSTGKKGQDVTLEVGQWNDGDKAKSQYDTLAEAMTGKELGSGNVKVSGKTTGAYSAKADPDDDTKAVAVWRNDTVVFYATGAKNDIQRFYQQFPL
>NC_008618.1|WP_004268639.1|452822_452912_+|AURKAIP1/COX24-domain-containing-protein
MGSVIKKRRKRMSKKKHRKLLRKTRHQRK
>NC_008618.1|WP_011742841.1|453046_453745_-|ribose-5-phosphate-isomerase-RpiA
MDKAQQDALKKAAGIEAAKLIQNGMIAGLGTGSTVRFLVDELGRRVKEEGLEFTGVTTSRRTQEQAEGYGIKIVNIDDVDHIDVTIDGADEVDKNFNGIKGGGAALLWEKIVATNSNKIVWIVDESKVVDTIGKFPLPVEVIPFGAGQVVKKFEAKGYKPVLRLDANGEPVRTDENNYVVDLHLERIDHPQELAQDLITTVGVVEHGLFLNMVDQVIVGDPNGPRVMDNPNK
>NC_008618.1|WP_011742842.1|453966_455304_-|ribonuclease-HI
MTITVSTDGSALGNPNGPMGWAWADHEPAAGGKPGHEHAGDCDAGGATNGTNQIGELCAVLEALRAHPGSEDLVIETDSQYAINCSTKWVQGWKRNGWKNSQKKPVKNADLIRAIDNEIAHRAGSVRFVWVKGHAGNAGNEKVDELARTYAGDCRSHVREGYLPLEGWQSLLASEYSRGTDVPEDARMLMDGAISAAEYHMGRGQGDSATTGTGDSGADTANSSNSTKPRSIASMLAEPEGVSHDLADFGQTTDDDADDAVETTVLETEPAETTTMLETEATKVIPESSFPDAGGPAEPDESGKTDESGEPHQSYAQMLVKPDYFPREGDENDKPVTGNADGTDTDSTAVPQNANESRSESQDDEESAPEQAASSQSQDLPKLPHRPSPSGLSVSGTVRFTPPPESSPTFDGNPRLIRGYIAVEGYVMGDGTLVLDEAPFAVKHS
>NC_008618.1|WP_011742843.1|455408_456797_-|GHKL-domain-containing-protein
MFAPLGEIIRNGIAQTTPSGLFFAIGEQLNALSGLALCLIMAWSHMDNPRRNGTLFMSIGLVWFLLCGVLCGTLGIPSLWTVIPTAPLVLLVLRWLTELPWRQLLLIVATASYMVAIVYYLSLVIDVAVLGADSTNLRVGWPGLVNLLLLDVIALVSLWHPLHDSIPATFDSPSISKGFWQLIWLFPFVSSAIVVWCMPADNSTLLDSHMLEIAFTVAVVYSCFMVLAYFLIWYMIQQSDRLLAARRRQHYEALQTLQLQHMNERIREARQIKHNVRHHIHSLQALAAAEDMDGIRSYLDEMSKHRLLQPAPMQYCEHASLNAVLVYYCDWVRHLGADVDVKAAVPQYININNAELCSMVGNLLENATEAITQQTQGERRLKVRIRYRSGPPAALFITVDNTYGEADTSIEQIDGDLVSTKHGGTGLGTATVRETAERHHGTASFEHSDGMFRASVMLCLGD
>NC_008618.1|WP_041777246.1|456798_457614_-|response-regulator-transcription-factor
MRIAIVEDHPAERELIATMCAEYFNGRNVGATAGRNAMQTVCDVFPDAKSFIESWKNSRYDLLLLDCYLSDENLPHATTGLDIARLLRNQNDDCAIVFITSSTDFAVLGYEVQASGYLLKPVNRKTFEATMERVEEQLKAKPPVTHLAKAQSPGTVDSSWHVAFGNPAVTMDRRLIAYALSNAHYVEFTFADGTQTKIRTNFSDVDRRLTVFDNFYRTARGVLVNFDYVSGITNAQFVMKGGKRIPITKTAVTTTCRAYAEYTFTRMRTED

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Crispr_ID: NC_008618_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008618_3

1456091-1461835

TypeI

Consensus_repeat	Method
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	PILER-CR
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CRT

85 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_008618_3

>merge|NC_008618|3|1456091-1461835|PILER-CR,CRISPRCasFinder,CRT
ATTTCAATCCATGCTCTCCGTAAGGAGAGCGACCCCTCTACTGGTAAGGAGACTGATTATGGTCGATATTTCAATCCACGCTCTCCGTAAGGAAAGCGACCCGACCGCGAGGTAGTCGGATGATTGCATGGCGATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCACCGCGCCATGCAGTATTTCAGTACTACCCCGTTATTTCAATCCACACTCTCCGTAAGGAGAGCGACATAGCGAGGCCGTCAGATACGAGCTTCCCAAACTCATTTCAATCCACGCTCTCCGTAAGAAGAGCGACACTCCAAAAACCACTGCATACACTGTTACACCTAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACATGGAAACCCCGCGCAATTCCGATAATTACGATATTTCAATCCACGCTCTCCGTAAGGAGAGTGACTTACCGTGACGGGCACCGCCACGTACGTCAACCCATTTCAATCCACGATCTCCGTAAGGAGAGCGACACCGGAGAGCGTCGGCAAATGGCGAAACTATTATTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACAATATCAGAGGCGCATGCCAAGCGCAACTCAGATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCTCTAGTGTCCTAAGTTATAGGCGAGACTTGTGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGATTCTCTATGGTGATACTCATGATTCGTCCTTAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACATATCCTGCGTGACCAGCTCGTCACGCTGCGGCAGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTGCCCGTGACGCGAATCGCGTAGCCGGTCAAACCATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCCTGGGCGTGATGGACGTGGGCGACTCGACCGTGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCGTGGAAGCAGCTTTTCGTCAGCTATGGCGCAAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGTATCCTCCCTGATCGTCCGCGGCCAGGTCGGAATTTCAATCCACGTTCTCCGTAAGGAGAGCGACGGCCACCGTCATTCGGATATGCGGCAGGCTTGGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCATTGAGAGCGTGGAGTCGCGGGAAACTCACGATATTTCAATCCACGCTCTCCGCAAGGAGAGCGACCTGGCGTCCATTGACGATGGAACAGTCCGAAGCGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTTCGGGTTCCGGGGGAGTGTGGCCGGGAAGCACATTTCAATCCACGCTCTCCGTAAGGAGAGCGACACGCGACTAAGACTGCCCACCCACCATTAAAGGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGTCATCGATCATCATGCCGTGGCGAACTTCACCGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGGGTTCAGCTGCGCCTTGGTCAGGTCGGCGCTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGTTTCGGGAAATGCAGCCGCACATGACGCAATAAGCAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCGTATTGCGGGCGAATCATGTCGCCATGCTCGGCATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCAGAGTATTATGGCCCGCTTCGGTGCCTTCGATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCAGGCACAGGACGGCACCAACCGCACCGTCATGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCAGGCCGCCGACCATGTCGGACACCAACTGCATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCATGCCGACTGGCAGGGAATGGCTCCGTTCTGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTTGACAACGACGGTATCCTGCGCTGCGGTCTTGACATTTCAATCCACGCTCTCCGTAAGGAGAGCGACATACAGGCGCGGGAAAGCGCCATAACCGCGTACGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCCGCGTTCTATTGGAACGCCAAAAGTCAAGAGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACAAGAGTGTCTGAGAGATTTCCAGAGTGTCATAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTTCGCATGTGCTGGGATTCTTCCTCTTCATCCATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTCGCTTGATGCTTATGGCGTGGCTCAGGCTTGATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTGTCCGCCCCTGCCTCATTGTAGTTGGGGATATAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGTGCAATGAGCGTTGACGTATTCAACGCGCTGAATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTAGCACGAACTGGGAAGAGGCGGATGCCAGCAAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTCGAATATGAAGAACGCACCTCGTACATCGACATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGGCAGACACCACCGGCCGCCATGCGCTCCATTGGCATTTTAATCCACGCTCTCCGTAAGGAGAGCGACCTGCTGCGCGAACGTCGGAATGCCGGACACGTTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTTTGGAGCACGGCTGGATCGGAGAGAACCCCATTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCCACACCGAGCGCAACGGGTCGCTGCTGACCCTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGTGCGCCTCTTCTGGGAAGAGGTCGTAGACGAAGCCATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCAACCAAGTGGCCGAAGCGCTGCTCGGAGCCGGCAAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGTTCCTCGCGGGAATTGTAGAGGCGAGTGTCGGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCTTCCACGATGCGATCACCTCGGGCGTGAAGACATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTGGATGTCTGCACGACGTACCTGCACCGGTATAAATTTCAATCCACGCTCTCCGTAAGGAAAGCGACCATGCAAGCGCAAGAAAAACTTCGTCAACAGACGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACAAATACGCAAAGTCAAGATGCTGGTGCTGCGAGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCGCTCCCCACGCATCGGCGTCCATCTTGCGCTTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGGTGGCGCATGAGGTTGTGGTGGCGGCGGGAGATATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTCTGCCAGAAAGTGAATCTGAAAGCTCAATGGCGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCGGCGCTGGTGAACCGTATCGGCGGTACTTATGTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCGGCGCTGGTGAACCGTATCGGCGGTACTTATGTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACTCTCCCTCTACGCCGCAATATTTGCGATTGCCGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACGCGCATTCAAAAACGGCTTGTCCCCAACGGTTAGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCACCTGGAAGTAATTGCTGGTGCATTCCGGATTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCAGGCGCGTGGCTATCGCGCCATTTGCGAGACATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCAATAAACAGCGTAAAAATGACGGGACATGGTAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCATCCGCCATGATTCAACGCCATCCTTCATCTCATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCAACTTCCAGCAGGAATACGTTCCAAGATAAGGAATTTCAATCCACGCTCTCTGTAAGGAGAGCGACCAACTTCCAGCAGGAATACGTTCCAAGATAAGGAATTTCAATCCACGCTCTCTGTAAGGAGAGCGACTCTTGGGGAGGCTGACTGACATGACGCGCAGTAGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGACGCTCCTGCGGGTAACGCTCGTAATCAGGCTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGCCACGTCCGACCATCACGCCGACCTCGTCGCGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCATCGCCGCGCAGCAGTCGCGCATCGTTGAACTCATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCAACTACAGCCTCCCGCTCAACCTGAGTGACCTGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCTGGTATCACCAATTTTCCAACCTTCATGACGGTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGGCCTCGTACGCGACGTGGTCGTCGCCATTGCAAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCACACGCCACATTCATCAACGCCATCAAGGGAGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCACGGACGGCTGGTATACGGCGGCCGAGGTACGGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCTCGCCGACCGGCTCACCGACCTGACCAACCTCGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCTCTTCGGTCAGGCTAAACGCCTCGTCCAAGGTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCTTGACTGGTTCGAATTGCATGTGCGCGTATGGTAGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCAAAAGCGTCTGAGAGACTTCCAAGGTGTCATAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCCACGGCTCAACACATGGCTCCGCGACCAATGGGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCATGTACTCCGCCCATCGTCCCATGGAGTCTCGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGGACTGGCATGATTCGGCTGACGTCACTTATGGAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCGTCGGTTGGTGCCGCATCAAGATGCACCTTGTAATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCACCGCACAGCCAACGATGTCGCCAATACGAAAGCATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCTATCGGATAACTAAGGGATGTAACCGTTTGTACCATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCCTGTACGGTGCTGCCCCAATACAGATTTTCCTTTTTATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCTTCCAAATCATCGAGACGTTGCGCGATCTCGTGAGATTTCAATCCACGCTCTCCGTAAGGAGAGCGACCTGGACGCTCCCCAAGCCGAGGGGGTGGCTTCATATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC

>NC_008618|3|1|1456091-1461835|PILER-CR
ATTTCAATCCATGCTCTCCGTAAGGAGAGCGAC	CCCTCTACTGGTAAGGAGACTGATTATGGTCGAT
ATTTCAATCCACGCTCTCCGTAAGGAAAGCGAC	CCGACCGCGAGGTAGTCGGATGATTGCATGGCGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCGCGCCATGCAGTATTTCAGTACTACCCCGTT
ATTTCAATCCACACTCTCCGTAAGGAGAGCGAC	ATAGCGAGGCCGTCAGATACGAGCTTCCCAAACTC
ATTTCAATCCACGCTCTCCGTAAGAAGAGCGAC	ACTCCAAAAACCACTGCATACACTGTTACACCTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATGGAAACCCCGCGCAATTCCGATAATTACGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGTGAC	TTACCGTGACGGGCACCGCCACGTACGTCAACCC
ATTTCAATCCACGATCTCCGTAAGGAGAGCGAC	ACCGGAGAGCGTCGGCAAATGGCGAAACTATTATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AATATCAGAGGCGCATGCCAAGCGCAACTCAGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTCTAGTGTCCTAAGTTATAGGCGAGACTTGTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GATTCTCTATGGTGATACTCATGATTCGTCCTTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATATCCTGCGTGACCAGCTCGTCACGCTGCGGCAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGCCCGTGACGCGAATCGCGTAGCCGGTCAAACC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCCTGGGCGTGATGGACGTGGGCGACTCGACCGTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGTGGAAGCAGCTTTTCGTCAGCTATGGCGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTATCCTCCCTGATCGTCCGCGGCCAGGTCGGA
ATTTCAATCCACGTTCTCCGTAAGGAGAGCGAC	GGCCACCGTCATTCGGATATGCGGCAGGCTTGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATTGAGAGCGTGGAGTCGCGGGAAACTCACGAT
ATTTCAATCCACGCTCTCCGCAAGGAGAGCGAC	CTGGCGTCCATTGACGATGGAACAGTCCGAAGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTCGGGTTCCGGGGGAGTGTGGCCGGGAAGCAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ACGCGACTAAGACTGCCCACCCACCATTAAAGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTCATCGATCATCATGCCGTGGCGAACTTCACCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGGTTCAGCTGCGCCTTGGTCAGGTCGGCGCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTTTCGGGAAATGCAGCCGCACATGACGCAATAAGCA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGTATTGCGGGCGAATCATGTCGCCATGCTCGGC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCAGAGTATTATGGCCCGCTTCGGTGCCTTCGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAGGCACAGGACGGCACCAACCGCACCGTCATG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAGGCCGCCGACCATGTCGGACACCAACTGCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCATGCCGACTGGCAGGGAATGGCTCCGTTCTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTGACAACGACGGTATCCTGCGCTGCGGTCTTGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATACAGGCGCGGGAAAGCGCCATAACCGCGTACGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCCGCGTTCTATTGGAACGCCAAAAGTCAAGAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AAGAGTGTCTGAGAGATTTCCAGAGTGTCATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTCGCATGTGCTGGGATTCTTCCTCTTCATCCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCGCTTGATGCTTATGGCGTGGCTCAGGCTTGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGTCCGCCCCTGCCTCATTGTAGTTGGGGATATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTGCAATGAGCGTTGACGTATTCAACGCGCTGAAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TAGCACGAACTGGGAAGAGGCGGATGCCAGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCGAATATGAAGAACGCACCTCGTACATCGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGCAGACACCACCGGCCGCCATGCGCTCCATTGGC
ATTTTAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGCTGCGCGAACGTCGGAATGCCGGACACGTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTTGGAGCACGGCTGGATCGGAGAGAACCCCATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCCACACCGAGCGCAACGGGTCGCTGCTGACCCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTGCGCCTCTTCTGGGAAGAGGTCGTAGACGAAGCC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACCAAGTGGCCGAAGCGCTGCTCGGAGCCGGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTTCCTCGCGGGAATTGTAGAGGCGAGTGTCGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTTCCACGATGCGATCACCTCGGGCGTGAAGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGGATGTCTGCACGACGTACCTGCACCGGTATAA
ATTTCAATCCACGCTCTCCGTAAGGAAAGCGAC	CATGCAAGCGCAAGAAAAACTTCGTCAACAGACG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AAATACGCAAAGTCAAGATGCTGGTGCTGCGAGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCGCTCCCCACGCATCGGCGTCCATCTTGCGCTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GGTGGCGCATGAGGTTGTGGTGGCGGCGGGAGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCTGCCAGAAAGTGAATCTGAAAGCTCAATGGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCTCCCTCTACGCCGCAATATTTGCGATTGCCGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGCATTCAAAAACGGCTTGTCCCCAACGGTTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCTGGAAGTAATTGCTGGTGCATTCCGGATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAGGCGCGTGGCTATCGCGCCATTTGCGAGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAATAAACAGCGTAAAAATGACGGGACATGGTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATCCGCCATGATTCAACGCCATCCTTCATCTC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA
ATTTCAATCCACGCTCTCTGTAAGGAGAGCGAC	CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA
ATTTCAATCCACGCTCTCTGTAAGGAGAGCGAC	TCTTGGGGAGGCTGACTGACATGACGCGCAGTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGACGCTCCTGCGGGTAACGCTCGTAATCAGGCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGCCACGTCCGACCATCACGCCGACCTCGTCGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATCGCCGCGCAGCAGTCGCGCATCGTTGAACTC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACTACAGCCTCCCGCTCAACCTGAGTGACCTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGGTATCACCAATTTTCCAACCTTCATGACGGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGCCTCGTACGCGACGTGGTCGTCGCCATTGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACACGCCACATTCATCAACGCCATCAAGGGAGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACGGACGGCTGGTATACGGCGGCCGAGGTACGG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTCGCCGACCGGCTCACCGACCTGACCAACCTCGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTCTTCGGTCAGGCTAAACGCCTCGTCCAAGGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTTGACTGGTTCGAATTGCATGTGCGCGTATGGTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAAAAGCGTCTGAGAGACTTCCAAGGTGTCATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCCACGGCTCAACACATGGCTCCGCGACCAATGGG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATGTACTCCGCCCATCGTCCCATGGAGTCTCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGACTGGCATGATTCGGCTGACGTCACTTATGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTCGGTTGGTGCCGCATCAAGATGCACCTTGTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCGCACAGCCAACGATGTCGCCAATACGAAAGC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTATCGGATAACTAAGGGATGTAACCGTTTGTACC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTGTACGGTGCTGCCCCAATACAGATTTTCCTTTTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTTCCAAATCATCGAGACGTTGCGCGATCTCGTGAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGGACGCTCCCCAAGCCGAGGGGGTGGCTTCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC

>NC_008618|3|3|1456091-1461835|CRISPRCasFinder
ATTTCAATCCATGCTCTCCGTAAGGAGAGCGAC	CCCTCTACTGGTAAGGAGACTGATTATGGTCGAT
ATTTCAATCCACGCTCTCCGTAAGGAAAGCGAC	CCGACCGCGAGGTAGTCGGATGATTGCATGGCGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCGCGCCATGCAGTATTTCAGTACTACCCCGTT
ATTTCAATCCACACTCTCCGTAAGGAGAGCGAC	ATAGCGAGGCCGTCAGATACGAGCTTCCCAAACTC
ATTTCAATCCACGCTCTCCGTAAGAAGAGCGAC	ACTCCAAAAACCACTGCATACACTGTTACACCTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATGGAAACCCCGCGCAATTCCGATAATTACGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGTGAC	TTACCGTGACGGGCACCGCCACGTACGTCAACCC
ATTTCAATCCACGATCTCCGTAAGGAGAGCGAC	ACCGGAGAGCGTCGGCAAATGGCGAAACTATTATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AATATCAGAGGCGCATGCCAAGCGCAACTCAGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTCTAGTGTCCTAAGTTATAGGCGAGACTTGTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GATTCTCTATGGTGATACTCATGATTCGTCCTTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATATCCTGCGTGACCAGCTCGTCACGCTGCGGCAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGCCCGTGACGCGAATCGCGTAGCCGGTCAAACC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCCTGGGCGTGATGGACGTGGGCGACTCGACCGTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGTGGAAGCAGCTTTTCGTCAGCTATGGCGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTATCCTCCCTGATCGTCCGCGGCCAGGTCGGA
ATTTCAATCCACGTTCTCCGTAAGGAGAGCGAC	GGCCACCGTCATTCGGATATGCGGCAGGCTTGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATTGAGAGCGTGGAGTCGCGGGAAACTCACGAT
ATTTCAATCCACGCTCTCCGCAAGGAGAGCGAC	CTGGCGTCCATTGACGATGGAACAGTCCGAAGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTCGGGTTCCGGGGGAGTGTGGCCGGGAAGCAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ACGCGACTAAGACTGCCCACCCACCATTAAAGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTCATCGATCATCATGCCGTGGCGAACTTCACCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGGTTCAGCTGCGCCTTGGTCAGGTCGGCGCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTTTCGGGAAATGCAGCCGCACATGACGCAATAAGCA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGTATTGCGGGCGAATCATGTCGCCATGCTCGGC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCAGAGTATTATGGCCCGCTTCGGTGCCTTCGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAGGCACAGGACGGCACCAACCGCACCGTCATG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAGGCCGCCGACCATGTCGGACACCAACTGCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCATGCCGACTGGCAGGGAATGGCTCCGTTCTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTGACAACGACGGTATCCTGCGCTGCGGTCTTGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATACAGGCGCGGGAAAGCGCCATAACCGCGTACGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCCGCGTTCTATTGGAACGCCAAAAGTCAAGAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AAGAGTGTCTGAGAGATTTCCAGAGTGTCATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTCGCATGTGCTGGGATTCTTCCTCTTCATCCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCGCTTGATGCTTATGGCGTGGCTCAGGCTTGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGTCCGCCCCTGCCTCATTGTAGTTGGGGATATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTGCAATGAGCGTTGACGTATTCAACGCGCTGAAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TAGCACGAACTGGGAAGAGGCGGATGCCAGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCGAATATGAAGAACGCACCTCGTACATCGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGCAGACACCACCGGCCGCCATGCGCTCCATTGGC
ATTTTAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGCTGCGCGAACGTCGGAATGCCGGACACGTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTTGGAGCACGGCTGGATCGGAGAGAACCCCATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCCACACCGAGCGCAACGGGTCGCTGCTGACCCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTGCGCCTCTTCTGGGAAGAGGTCGTAGACGAAGCC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACCAAGTGGCCGAAGCGCTGCTCGGAGCCGGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTTCCTCGCGGGAATTGTAGAGGCGAGTGTCGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTTCCACGATGCGATCACCTCGGGCGTGAAGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGGATGTCTGCACGACGTACCTGCACCGGTATAA
ATTTCAATCCACGCTCTCCGTAAGGAAAGCGAC	CATGCAAGCGCAAGAAAAACTTCGTCAACAGACG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AAATACGCAAAGTCAAGATGCTGGTGCTGCGAGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCGCTCCCCACGCATCGGCGTCCATCTTGCGCTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GGTGGCGCATGAGGTTGTGGTGGCGGCGGGAGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCTGCCAGAAAGTGAATCTGAAAGCTCAATGGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCTCCCTCTACGCCGCAATATTTGCGATTGCCGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGCATTCAAAAACGGCTTGTCCCCAACGGTTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCTGGAAGTAATTGCTGGTGCATTCCGGATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAGGCGCGTGGCTATCGCGCCATTTGCGAGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAATAAACAGCGTAAAAATGACGGGACATGGTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATCCGCCATGATTCAACGCCATCCTTCATCTC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA
ATTTCAATCCACGCTCTCTGTAAGGAGAGCGAC	CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA
ATTTCAATCCACGCTCTCTGTAAGGAGAGCGAC	TCTTGGGGAGGCTGACTGACATGACGCGCAGTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGACGCTCCTGCGGGTAACGCTCGTAATCAGGCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGCCACGTCCGACCATCACGCCGACCTCGTCGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATCGCCGCGCAGCAGTCGCGCATCGTTGAACTC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACTACAGCCTCCCGCTCAACCTGAGTGACCTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGGTATCACCAATTTTCCAACCTTCATGACGGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGCCTCGTACGCGACGTGGTCGTCGCCATTGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACACGCCACATTCATCAACGCCATCAAGGGAGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACGGACGGCTGGTATACGGCGGCCGAGGTACGG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTCGCCGACCGGCTCACCGACCTGACCAACCTCGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTCTTCGGTCAGGCTAAACGCCTCGTCCAAGGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTTGACTGGTTCGAATTGCATGTGCGCGTATGGTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAAAAGCGTCTGAGAGACTTCCAAGGTGTCATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCCACGGCTCAACACATGGCTCCGCGACCAATGGG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATGTACTCCGCCCATCGTCCCATGGAGTCTCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGACTGGCATGATTCGGCTGACGTCACTTATGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTCGGTTGGTGCCGCATCAAGATGCACCTTGTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCGCACAGCCAACGATGTCGCCAATACGAAAGC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTATCGGATAACTAAGGGATGTAACCGTTTGTACC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTGTACGGTGCTGCCCCAATACAGATTTTCCTTTTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTTCCAAATCATCGAGACGTTGCGCGATCTCGTGAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGGACGCTCCCCAAGCCGAGGGGGTGGCTTCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC

>NC_008618|3|1|1456091-1461835|CRT
ATTTCAATCCATGCTCTCCGTAAGGAGAGCGAC	CCCTCTACTGGTAAGGAGACTGATTATGGTCGAT
ATTTCAATCCACGCTCTCCGTAAGGAAAGCGAC	CCGACCGCGAGGTAGTCGGATGATTGCATGGCGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCGCGCCATGCAGTATTTCAGTACTACCCCGTT
ATTTCAATCCACACTCTCCGTAAGGAGAGCGAC	ATAGCGAGGCCGTCAGATACGAGCTTCCCAAACTC
ATTTCAATCCACGCTCTCCGTAAGAAGAGCGAC	ACTCCAAAAACCACTGCATACACTGTTACACCTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATGGAAACCCCGCGCAATTCCGATAATTACGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGTGAC	TTACCGTGACGGGCACCGCCACGTACGTCAACCC
ATTTCAATCCACGATCTCCGTAAGGAGAGCGAC	ACCGGAGAGCGTCGGCAAATGGCGAAACTATTATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AATATCAGAGGCGCATGCCAAGCGCAACTCAGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTCTAGTGTCCTAAGTTATAGGCGAGACTTGTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GATTCTCTATGGTGATACTCATGATTCGTCCTTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATATCCTGCGTGACCAGCTCGTCACGCTGCGGCAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGCCCGTGACGCGAATCGCGTAGCCGGTCAAACC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCCTGGGCGTGATGGACGTGGGCGACTCGACCGTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGTGGAAGCAGCTTTTCGTCAGCTATGGCGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTATCCTCCCTGATCGTCCGCGGCCAGGTCGGA
ATTTCAATCCACGTTCTCCGTAAGGAGAGCGAC	GGCCACCGTCATTCGGATATGCGGCAGGCTTGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATTGAGAGCGTGGAGTCGCGGGAAACTCACGAT
ATTTCAATCCACGCTCTCCGCAAGGAGAGCGAC	CTGGCGTCCATTGACGATGGAACAGTCCGAAGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTCGGGTTCCGGGGGAGTGTGGCCGGGAAGCAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ACGCGACTAAGACTGCCCACCCACCATTAAAGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTCATCGATCATCATGCCGTGGCGAACTTCACCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGGTTCAGCTGCGCCTTGGTCAGGTCGGCGCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTTTCGGGAAATGCAGCCGCACATGACGCAATAAGCA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGTATTGCGGGCGAATCATGTCGCCATGCTCGGC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCAGAGTATTATGGCCCGCTTCGGTGCCTTCGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAGGCACAGGACGGCACCAACCGCACCGTCATG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAGGCCGCCGACCATGTCGGACACCAACTGCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCATGCCGACTGGCAGGGAATGGCTCCGTTCTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTGACAACGACGGTATCCTGCGCTGCGGTCTTGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	ATACAGGCGCGGGAAAGCGCCATAACCGCGTACGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCCGCGTTCTATTGGAACGCCAAAAGTCAAGAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AAGAGTGTCTGAGAGATTTCCAGAGTGTCATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTCGCATGTGCTGGGATTCTTCCTCTTCATCCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCGCTTGATGCTTATGGCGTGGCTCAGGCTTGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGTCCGCCCCTGCCTCATTGTAGTTGGGGATATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTGCAATGAGCGTTGACGTATTCAACGCGCTGAAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TAGCACGAACTGGGAAGAGGCGGATGCCAGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCGAATATGAAGAACGCACCTCGTACATCGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGCAGACACCACCGGCCGCCATGCGCTCCATTGGC
ATTTTAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGCTGCGCGAACGTCGGAATGCCGGACACGTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TTTGGAGCACGGCTGGATCGGAGAGAACCCCATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCCACACCGAGCGCAACGGGTCGCTGCTGACCCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GTGCGCCTCTTCTGGGAAGAGGTCGTAGACGAAGCC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACCAAGTGGCCGAAGCGCTGCTCGGAGCCGGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTTCCTCGCGGGAATTGTAGAGGCGAGTGTCGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTTCCACGATGCGATCACCTCGGGCGTGAAGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TGGATGTCTGCACGACGTACCTGCACCGGTATAA
ATTTCAATCCACGCTCTCCGTAAGGAAAGCGAC	CATGCAAGCGCAAGAAAAACTTCGTCAACAGACG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	AAATACGCAAAGTCAAGATGCTGGTGCTGCGAGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCGCTCCCCACGCATCGGCGTCCATCTTGCGCTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GGTGGCGCATGAGGTTGTGGTGGCGGCGGGAGAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCTGCCAGAAAGTGAATCTGAAAGCTCAATGGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGGCGCTGGTGAACCGTATCGGCGGTACTTATGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	TCTCCCTCTACGCCGCAATATTTGCGATTGCCGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	GCGCATTCAAAAACGGCTTGTCCCCAACGGTTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCTGGAAGTAATTGCTGGTGCATTCCGGATT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAGGCGCGTGGCTATCGCGCCATTTGCGAGAC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAATAAACAGCGTAAAAATGACGGGACATGGTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATCCGCCATGATTCAACGCCATCCTTCATCTC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA
ATTTCAATCCACGCTCTCTGTAAGGAGAGCGAC	CAACTTCCAGCAGGAATACGTTCCAAGATAAGGA
ATTTCAATCCACGCTCTCTGTAAGGAGAGCGAC	TCTTGGGGAGGCTGACTGACATGACGCGCAGTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGACGCTCCTGCGGGTAACGCTCGTAATCAGGCT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGCCACGTCCGACCATCACGCCGACCTCGTCGCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATCGCCGCGCAGCAGTCGCGCATCGTTGAACTC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CAACTACAGCCTCCCGCTCAACCTGAGTGACCTG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGGTATCACCAATTTTCCAACCTTCATGACGGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGCCTCGTACGCGACGTGGTCGTCGCCATTGCAA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACACGCCACATTCATCAACGCCATCAAGGGAGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACGGACGGCTGGTATACGGCGGCCGAGGTACGG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTCGCCGACCGGCTCACCGACCTGACCAACCTCGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTCTTCGGTCAGGCTAAACGCCTCGTCCAAGGT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTTGACTGGTTCGAATTGCATGTGCGCGTATGGTAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCAAAAGCGTCTGAGAGACTTCCAAGGTGTCATA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCCACGGCTCAACACATGGCTCCGCGACCAATGGG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CATGTACTCCGCCCATCGTCCCATGGAGTCTCG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGGACTGGCATGATTCGGCTGACGTCACTTATGGA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CGTCGGTTGGTGCCGCATCAAGATGCACCTTGTA
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CACCGCACAGCCAACGATGTCGCCAATACGAAAGC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTATCGGATAACTAAGGGATGTAACCGTTTGTACC
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CCTGTACGGTGCTGCCCCAATACAGATTTTCCTTTTT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTTCCAAATCATCGAGACGTTGCGCGATCTCGTGAG
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC	CTGGACGCTCCCCAAGCCGAGGGGGTGGCTTCAT
ATTTCAATCCACGCTCTCCGTAAGGAGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008618.1\|WP_011743508.1\|1465227_1466094_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_008618.1\|WP_011743511.1\|1468121_1470539_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_008618.1\|WP_011743512.1\|1470787_1474120_-\|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NC_008618.1\|WP_003811029.1\|1462585_1463617_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_008618.1\|WP_011743510.1\|1467133_1467856_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_008618.1\|WP_003811034.1\|1464328_1465174_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NC_008618.1\|WP_011743502.1\|1449637_1451311_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NC_008618.1\|WP_041777367.1\|1447506_1448733_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224090
NC_008618.1\|WP_011743498.1\|1445646_1446423_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NC_008618.1\|WP_011743507.1\|1463616_1464294_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_008618.1\|WP_042990820.1\|1453428_1453758_+\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_011743506.1\|1462227_1462518_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_008618.1\|WP_113736378.1\|1454592_1455480_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_008618.1\|WP_021913247.1\|1451447_1452392_-\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|366471
NC_008618.1\|WP_003810962.1\|1452889_1453228_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_008618.1\|WP_011743497.1\|1444661_1445561_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_008618.1\|WP_011743509.1\|1466098_1467130_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_008618.1\|WP_011743501.1\|1448933_1449479_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NC_008618.1\|WP_011743513.1\|1474509_1475982_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273270
NC_008618.1\|WP_041777366.1\|1446502_1447351_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847

Protein	Function_ID	Function_description	E-value
NC_008618.1\|WP_011743508.1\|1465227_1466094_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	4.33928e-50
NC_008618.1\|WP_011743511.1\|1468121_1470539_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.94581e-45
NC_008618.1\|WP_011743512.1\|1470787_1474120_-\|mupirocin-resistant-isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_008618.1\|WP_003811029.1\|1462585_1463617_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	8.90562e-177
NC_008618.1\|WP_011743510.1\|1467133_1467856_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.52905e-98
NC_008618.1\|WP_003811034.1\|1464328_1465174_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.77818e-107
NC_008618.1\|WP_011743502.1\|1449637_1451311_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	5.0303e-135
NC_008618.1\|WP_041777367.1\|1447506_1448733_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	4.36219e-107
NC_008618.1\|WP_011743498.1\|1445646_1446423_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.75454e-110
NC_008618.1\|WP_011743507.1\|1463616_1464294_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.47345e-31
NC_008618.1\|WP_011743506.1\|1462227_1462518_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.11579e-29
NC_008618.1\|WP_113736378.1\|1454592_1455480_+\|IS21-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.01997e-10
NC_008618.1\|WP_021913247.1\|1451447_1452392_-\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|366471	pfam01112, Asparaginase_2, Asparaginase.	5.23982e-103
NC_008618.1\|WP_003810962.1\|1452889_1453228_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.11798e-05
NC_008618.1\|WP_011743497.1\|1444661_1445561_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	6.69497e-72
NC_008618.1\|WP_011743509.1\|1466098_1467130_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	1.52093e-34
NC_008618.1\|WP_011743501.1\|1448933_1449479_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	3.95891e-14
NC_008618.1\|WP_011743513.1\|1474509_1475982_-\|MFS-transporter	gnl\|CDD\|273270	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter. The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.19003e-127
NC_008618.1\|WP_041777366.1\|1446502_1447351_+\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	7.65248e-107

>NC_008618.1|WP_113736378.1|1454592_1455480_+|IS21-family-transposase
MAIPMPKQQDIRRLDRQGVSRSEIARRPDVDRATVAKYADMDDMTPKPPTDRRRGSKIDPYAALVDGWLEADRRPPRKQRHTAKRVHDRLRAETEYDGEYTTTPEYVRRWREANRRGSDGYGELVWAPGVAQIDFGVAKARIAGELVDDHCLVVTFPHSNMRYVTSLPGENAECLCHGLVEVFEHIGGVPPVIVMDNATGAGRRNARGEVTPAAVLDVFDIKKSLSHKGNPYDNAVVESTNRPLKKELVYRNHCTTIERLRHDPDDYVWWSDNQRLRSALGYRSPKEFTEQGLVL
>NC_008618.1|WP_042990820.1|1453428_1453758_+|hypothetical-protein
MAAFGRPEYDRYVRLAEMMISFLRDHGYNYDANLDQDILDHDGPGVPVENGVDAIIEFNLTPPKDMITLFGQVHDENPWCDEEYEQFRDYLREREDEHQSGKLIPPSAD
>NC_008618.1|WP_003810962.1|1452889_1453228_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MRFQISQRRNMSAASILDSMVSVTSLNHGGASKALSQVGDNHPVVVLKNNQPSAVIITPADYRRLTQAEENFALYRKAVERLRNDDSTLLTDADVFGEDYEPIDDGFEPEFE
>NC_008618.1|WP_021913247.1|1451447_1452392_-|isoaspartyl-peptidase/L-asparaginase
MSTNEAALPQSTVRVAQADPDGILLVIHAGAGNRGKKDTPERRAQVEQDLNRALEAGYALLEQGAPAEDAVCAAIRVMEDAPEFNAGRGAALTSEGIVSMDSCLMTGVDGEVGSACGLTTSKNPINVARAIKEKTKHVMFAKPGDNLLKEWGIELCDSEYFITPARQESLREAQSNGDEWEKHGTIGAVARDASGNIAAGTSTGGITNQMPGRVGDSPLPGCGTYANNDSVAISCTGIGEAFVKEVAAHQVSDRVLYAKEDPVEAAKAALDGVARHHGDGGMIVVPAHGDGAMVFNSEMMNCGWKSPKGSYVQS
>NC_008618.1|WP_011743502.1|1449637_1451311_+|ABC-transporter-substrate-binding-protein
MSTSEEKTMKRNMLHRLVAMAAAGTVLMSVAACRSSSDDNAATSNSSDTSLISVNNSEPQNGLIPSDTNEMGGGKVIRYLFEGLVSFDAKGKQHLEVAESITPNEDATKYTIKLKKGWKFTNGEAVTAHSFADTWSFAANVKNAQKTSSRFSTIKGYDELQDPNVDPKATLSGLSTPDDYTLVVELNKPDSVFPTKLAHQSMFPLPSVAFKDIKKFGQAPIGNGPYKFKSWSHDKNIIIVPNKDYKGSRKVSNNGIEYRVYTNEDSAYSDVLSGNLDVMDQIPQSAVKTFRQDSSVIAYSQAGSSFQSFVIPERLEHFGNDEEGQLRRQAISMAINRDQIVKKVYNNTKTPATDFTSPLVPEYVKKLEKNGDNLKYNASKAKELWKKANAIKPWSGNFRIAYNADGGHKEWVDAVCNQIKNTLDIDAAGEPYATFSDVRNQVTNRTIKTAFRSGWMLDYPSAEDYLNPLYASSSADGHGSNDGDYKSEEFDKLLNAALAQTDVKKRTEDFTKAQEVLANDLPVIPLWNDNVAAVSATNVKNVSFDYTNLPTYNTITK
>NC_008618.1|WP_011743501.1|1448933_1449479_+|DUF805-domain-containing-protein
MRFPYSGNGTWTPDYHCGFIDAVKRFFIGYMEFRGRSSRREFWLAMLFFIPVSVLIFLIPAAGTVSGILWMLATMVPIMAISFRRLHDANRTGWWFLLGHVGTILALAMLVVIAFGLVIIEIGMIMVIPHEPPKLDFHDPNSFPGMLLTLFYVSLGMAGISLIIQAFLYSLPSKPEGVRFD
>NC_008618.1|WP_041777367.1|1447506_1448733_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MLERMEKQNRIFSGFDADAIDRTTAADLAEVGSDKWTRYPGCIGAFIAEMDYGLAPCIQQAIDSACDHCKLGYIPEPWKRRVAEACAGWQKSHYGWDVDPDIIRVVPDVLEAYEIFLRELVGAGNAVVVPTPAYMPFLSVPKLYDVDVIEIEMLQGTDETTGEREWLFDFNAIERAFAAGCHAFVLCNPHNPIGKVLTLAEEQRLCELAERYDVRIFNDEIHAPFVFEGRHIPYPTISKAAARQSMTATSASKSFNIPGTKCAQVLLTNPADREMWAERAEWSEHQTATIGAIATTTAYNEGDPWFQDALSYVRRNLGLFDKQMRTRFSGVGYIRPRGTYIAWLDFGPLGIDDPAAYFLEKAKVALTDGRSCGRAGAGCVRVNMAMPYPLLVDCLNRMHDALQADGLL
>NC_008618.1|WP_041777366.1|1446502_1447351_+|patatin-family-protein
MANRTAMIDVGGGFRAIYGAGVMDRMLEDGIHVDHCYGVSAGSANMVSYISGQHGRNHTFYTQYAFRKEYASFDSYVKNHNYANLDYVYSTLSNHDGENPVDYEAFAANPTEFTVVACNADDGSTKYFDKSDVGYDNYDIMKASSAVPVACEPYVIDGVPYYDGGIADPIPVQKAIDDGYDRIVVILTRPKDTVREQKKDIGPATILKRTHPEAAEKLMNRYQTYNDEMALAKEYEKDGRVLILAPESMYGLNTLSKSFEGLERMYRAGYAAAAAIPAFLES
>NC_008618.1|WP_011743498.1|1445646_1446423_+|glutamate-racemase
MASTAPIGVFDSGLGGISVAREIRRDMPNEHVLYFGDSANAPYGTKSPEQVRELSDVIVKRFVEQGVKAVVIACNTATSAAANELRDTYDIPIIGMEPALKVACDRGHGKRQRVIVAATPLTLRERKFAVLMDRFKADHTIFPEPCPGLVEIVEHGQLDDHDVVMRTLHQYFDQYDLSTIDSVVLGCTHFVFYRDYFRELLPDTAAIIDGNEGTVRHLGVVLESLGKLAPEDAEGSIDLANSDTSARIAQLAQSLLDR
>NC_008618.1|WP_011743497.1|1444661_1445561_-|diaminopimelate-epimerase
MSIPSIVYKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIADCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVKVLTSLGDVPGLGKDVFQVEMGAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVVAVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWTITVRGGTLRVDVTDEDVKLTGSATIVGKIELL
>NC_008618.1|WP_011743506.1|1462227_1462518_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVSTETPEGKRRLRLVAKTCMKYGQRVQNSVFECSVSPSDYLVLVHDLLKIANIDEDSLRFYKLGARYADRIERYGHERSLPVNDVMMI
>NC_008618.1|WP_003811029.1|1462585_1463617_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKQLLNTLFVMTEDAYLALENDNVVIYQNDQTLAKVPLRSIEGIMCFSYKGASPALMGRCGKLGVSMAFYSPRGHYYCSVLGEENRNVLLRREQFRVADDEQKSLRYAKSFIVGKLYNAKWVLERTKRDHALRVNIDRLAEQSGKLSAALSKARKSLTIDELRGVEGLAAKDYFYAFDDLVLKNKDDFFFTSRSRRPPLDRLNALLSFCYSILTNDCIAALQGVGLDPYVGFMHTDRPGRASLALDLVEEFRPVLADRFVLTLVNTGAVKPGDFEIRENGGVLLSDFGRKKVLTAWQKKKSDQILHPFLQEKISWGLVPYVQALLLARSLRGDLDDYPPFMWK
>NC_008618.1|WP_011743507.1|1463616_1464294_-|CRISPR-associated-protein-Cas4
MKGPDGYSEADWLALSGIQHFSFCKRQWALIHIEQLWSENYLTTAGHLEHERAHDYAASESRGDMLIMRDLRVYSRALGITGACDVVEFHKSNDGVPLHGRDGLWLPYPIEYKHGKSKTIDADRLQLCAEAMCLEEMLACDIPEGALFYQQTKRRERVKFDEDLRNMVEADFLQMHDLFSRGWTPKVKQTRSCSACSLRDLCLPELRKMKSAKAYIEERLKESGE
>NC_008618.1|WP_003811034.1|1464328_1465174_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAALENKIDFAIAFAVNNANPNGDPLNGNRPRTTSEGLGEVSDVALKRKIRNRLQDAGESVFVQSDDRSDDGAKSLSDRFNTYLKTLPKDEQKQKNVVFGKVCERWLDVRSFGQVFAFKKAKDTDEVSIGVRGPVSIQPAFSINPIAIDDVQITKSVNSETTDSGKKSSDTMGMKYRVSGRAVYVTYGSISPQLAERTGFSAEDAEKIKEALVTLFENDESSARPSGSMEVLDVVWFAHNCKGGQYSSAKVHRSVSVDADGTVNVDDASIPGLRYEVIEGR
>NC_008618.1|WP_011743508.1|1465227_1466094_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MVVVILDAATTGRLGVTFYCELQKDEYIKRILQWHVDAAWPLTFFKKSIVEGAERVNVVQYEGAPSFTDIINCACGTSDRSSKSYKRFAKDVKERLIECMFGGAQFPMSILNAACHKVTKPMGYDNIRVWRRDFEIACSLWKKHYIDETRKQHRQEDVITMYLEPNRDDRDYLYGRLLALADNFEESVLRKQGVKDRPTNAIKLMSNFTAKPYTTWGTLWKQLTPYLKSANGGSWFRNEVDDVMALFKEGDFEDNKALSPMFLLGYSCQRRASKRKAQEISQKNNSNN
>NC_008618.1|WP_011743509.1|1466098_1467130_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSLFGNLLTTYEMIQGASGQTPHSAEKDGDADAAKRALIPYGHTTLPVSLTVLVDANGCIRGVAKRKSTIIIPCTEESMGRTIKPVPHPLFDQLQYVDSGRSPEKTSMYLQQLAKWKGDDAKLEAVFKCVSEHSISEAAAHYGVELTDKDDKAGVCFEVQIGLEDSDLSNDVDIRNRWIAYLQRSQHRLGKDVFGEDLYTPTTNFPKKVVSSDANAKLLSANDSTNFTFRGRFSSKEQALLVDSASSQKINSTLRWLVNNHGTLTGNQAIVVWAIKRPEEKPVLNPQSGSFDFDDFLSPIADESKALHDDISDALNATNVQYAKIFSRVLRGYEGAEDLEDAQ
>NC_008618.1|WP_011743510.1|1467133_1467856_-|type-I-C-CRISPR-associated-protein-Cas5
MERHRNSIEYEVWGRYALFSEVATRVGGEKYSYQVPTYQALKGITESIYWKPTFKWVIDAVRVMNKIQTESRGVRTIVYQPKKKNVKNDLSYYTYLKDVRYQVLAHFEWNDLREELADDRDENKHHNIAMRSVRQGGRRDIFLGARECQAYVEPCEFGGGEGFYDSYGEWNMGYMFHGFSYPDENPDHNLISRFWMPIMKDGVIRFESPDSPLLDRHIVRHGLNVKEFNLGKNVTSVEEE
>NC_008618.1|WP_011743511.1|1468121_1470539_-|CRISPR-associated-helicase/endonuclease-Cas3
MVLLARKDEEGNTQTLYDHLHGTGRLASGFEDEFADISRTAAVLHDVGKVAQQFQTYLLSDDGHRGDVQHARQGAFVVNDFFESKGEIEEIAKEILELAISKHHGGLPDCIDESGNRAFLLGFTESDKSNEKYAYQEIKRGLNGLALDLQSNFRGSAEDIACFLKKIKSLRLSKDSIYFYLGLLVKLIYSRLVDADRTDAACFETRKQYRPNAVDWQNLISRLDKSMRSFDSSSEINRIRHQINEQCCLAGARETGIYRLSIPTGGGKTLASLNFALHHALKTGKHRIIYVIPYLSITTQTAKTFRDVLGLSADSDVLLEHYSTAGMQRSADVADNASSEFEDAGEHQRKLAAERWDNPIIVTTMVEFLETVMSARGTKLRKFHNMADSVIIFDEIQSLPMNTINLFNEIVSFLSKITNSTILLCSATQPLLEKTKRENLLLSEKPDLIAETESYEDKLRRTRIVASTENKSCDELGQIIYQQARENGNCLAIVNLKKEAREIFQCLERLDVNHEFELIHLSTAMCGRHRTDCLNRIGALLDPGNPKPVICVSTQLIEAGVDISFACVVRAMAGLDSIMQAAGRCNRNGESVEPKNVYVYPLKAEDSMERYLPDIAMGKQLTLQIMENYPGKDLLSSNILEQYYDMLLRKKDGNGKGGYTDCPIRGRAEGATTAYDLLSFNECDRSQFTNTTGGKYGLCFAQAFQTVSDNFHVIPDVTHNVVVPYGQATELLDMLHRGELPEKISVLRRLQEYTVSLFDDDYRGLARKHAISLANEDFGVFLLNEEYYNDKYGVVREAEMPLLLM
>NC_008618.1|WP_011743512.1|1470787_1474120_-|mupirocin-resistant-isoleucine--tRNA-ligase
MKPPNEEHTVSESTNHVYPKAAAGEQSANVAPNPSFPKLEESVLDYWDKDDTFQKSIERRPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGHRVNRVFGWDTHGLPAELEAQKELGIDSVDQIKELGIDKFNDACRASVLKYTNEWKDYVHRQARWVDFEHGYKTLNITYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKLRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYLGKPLLGSYEKELGENYEIVRELKGAEMEGWRYYPVFPYFAGDENAVEGKVPGPEGYQIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAKGIKSIDVLDAGCKFTSLCPDYEGLYVFDANKPILRNLRAGDGPLARIPEEQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVAVTKIKDRLLELNQQINWIPNNVKDGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLDELKADFGDYPRDKDGNINMHRPYIDELTRVNPDDPTGKSHMHRISDVMDCWFESGSMSFAQYHYPFENKETFEQHFPCDYIVEYIGQTRGWFYVQHVMATALFDRPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFNDFGSDAMRWFLMSSPILRGGNLIVTADGIRDTVRQVMLPVWSSYYFFTLYANAAGYDARKLRADEVAKLPEMDRYLLARLRRLVEKTQHALDNFYISDACDAASDFIDVLTNWYIRNNRERFGAGDENAFNTLYTVLETFMRVLAPLAPMEAEAVWRGLTGGESVHLADWPFLADEKTGETTELGAVLQDDAKLVDAMEKVREVVSGTLSMRKAKQIRVRQPLAKLTVVVENPDAVAAYSDVLKGELNVKDIEFCTLEDAGSQGLKIVNELRVNARVAGKRLRKDVQFAIKASKSGAWHVDAAGVPVCETPNGEIALEEGEYELINRVEEENAQEAANSVSAALPTGGFVILDTELNDDLLAEGYARDVIRAVQEARKAAGLEISDRITLKVTVPADDVAKVEQFKDLVAHDTSSDSVSVEAGAELGVEVAKV
>NC_008618.1|WP_011743513.1|1474509_1475982_-|MFS-transporter
MAESNVAAAPKETQQSAKPTRKGSLLSRVAYSFGNVGQSAFYNALSTYFIVYVTSSLFSGVDKALATKLIGVITGLVVVIRIAEIFIDPLLGNIVDNTNTKWGRFKPWQLIGGTVSAVLLVLVYTGLFGLVNVNTTLFIVLFVITFIVLDVFYSLRDISYWGMIPALSSDSHERSTYTALGSFGGSIGYNGLTIVVIPIVTYFSYIFTGKHQESQSGWTCFAIIVAILGVLTVCSVAFGTKESSSTLRTKAEDNGGPLAAFKALAQNDQLLWVALSYLLYAIANVATTGVLMYLFKFILNNSAAYSIVGVVSVVAGIVMAPLYPILNKRIPRRYLYLGGMVLMVIGYLLFIINPTSLPVVTVGLVFFYLPQTFIQMTAILSLTDSIEYGQLKNGKRNEAVTLSVRPMLDKIAGACSNGIVGAVAIAAGMIGNATAADMTAANIRIFEICAFYVPLAVIILSAVVFLLKVKITEKMHDGIVRQLEAQLNEG

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Crispr_ID: NC_008618_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008618_4

1574147-1574285

Orphan

Consensus_repeat	Method
CGCTTTCCTCAGGGTGGGCATTCTGACCGGTCTG	PILER-CR

2 spacers

The CRISPR arrays of NC_008618_4

>merge|NC_008618|4|1574147-1574285|PILER-CR
TGGGCATTCTGACCGGTCTGAAGGGACAGGATGTCCACTCTCGTTTTCGTCGCTTTTCTGAGGGTGGGCATTCTGACCGGTCTGTGGAATCGGCATGCTTTCAACGTTTTCGTCAGGGTGGGCATTCTGACCGGTCTGC

>NC_008618|4|2|1574147-1574285|PILER-CR
TGGGCATTCTGACCGGTCTGAAGGGACAGGATGTC	CACTCTCGTTTTCGTCGCTTTTCTGAGGGT
GGGCATTCTGACCGGTCTGTGGAATCGGCATGCTT	TCAACGTTTTCGTCAGGGTG
GGCATTCTGACCGGTCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_008618.1\|WP_041777533.1\|1584356_1585262_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_167524176.1\|1574652_1574790_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_011743581.1\|1580187_1580685_+\|L-2-amino-thiazoline-4-carboxylic-acid-hydrolase	unknown	unknown	gnl\|CDD\|372958
NC_008618.1\|WP_011743572.1\|1568359_1570483_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NC_008618.1\|WP_041777387.1\|1577864_1578710_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270428
NC_008618.1\|WP_011743580.1\|1579423_1580134_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_008618.1\|WP_041777381.1\|1565315_1566725_-\|ATPase	unknown	unknown	unknown
NC_008618.1\|WP_113736362.1\|1564396_1564873_-\|histidine-kinase	unknown	unknown	unknown
NC_008618.1\|WP_041777388.1\|1578734_1579424_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_008618.1\|WP_143245386.1\|1585318_1585633_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_041777532.1\|1583245_1584328_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|377495
NC_008618.1\|WP_113736360.1\|1571548_1572037_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_041777383.1\|1573040_1573496_-\|WhiB-family-transcriptional-regulator	unknown	unknown	unknown
NC_008618.1\|WP_011743571.1\|1566871_1568359_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_011743582.1\|1580700_1581468_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_008618.1\|WP_050731459.1\|1564902_1565319_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_041777382.1\|1571020_1571512_+\|LURP-one-related-family-protein	unknown	unknown	gnl\|CDD\|227231
NC_008618.1\|WP_143245385.1\|1576069_1576918_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_041777527.1\|1570487_1570826_-\|hypothetical-protein	unknown	unknown	unknown
NC_008618.1\|WP_041777525.1\|1563205_1564243_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008618.1\|WP_041777532.1\|1583245_1584328_-\|CHAP-domain-containing-protein	gnl\|CDD\|377495	pfam05257, CHAP, CHAP domain. This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Escherichia coli gss, where it functions as a glutathionylspermidine amidase EC:3.5.1.78. This domain is found to be the catalytic domain of PlyCA. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyzes the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine.	1.4304e-12
NC_008618.1\|WP_011743581.1\|1580187_1580685_+\|L-2-amino-thiazoline-4-carboxylic-acid-hydrolase	gnl\|CDD\|372958	pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid hydrolase. This family of enzymes catalyzes the conversion of L-2-amino-delta2-thiazoline-4-carboxylic acid (L-ATC) to N-carbamoyl-L-cysteine. It cleaves the carbon-sulphur bond in the ring structure of L-ATC to produce N-carbamoyl-L-cysteine.	3.22214e-22
NC_008618.1\|WP_011743572.1\|1568359_1570483_-\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	1.46836e-05
NC_008618.1\|WP_041777382.1\|1571020_1571512_+\|LURP-one-related-family-protein	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	7.1981e-37
NC_008618.1\|WP_011743582.1\|1580700_1581468_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.10938e-133
NC_008618.1\|WP_011743580.1\|1579423_1580134_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.88577e-54
NC_008618.1\|WP_041777387.1\|1577864_1578710_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270428	cd13710, PBP2_TcyK, Substrate binding domain of an ABC transporter TcyJKLMN; the type 2 periplasmic binding protein fold. This group contains periplasmic cystine-binding domain (TcyK) of an ATP-binding cassette transporter from Bacillus subtilus and its closely related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.47621e-86
NC_008618.1\|WP_041777388.1\|1578734_1579424_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.38145e-51

>NC_008618.1|WP_041777383.1|1573040_1573496_-|WhiB-family-transcriptional-regulator
MTGESNLVTGVCSGLPLGIQDLMWGTDNERIKSTSDQRVLKSTARILCDMCPIQAQCLAQSIISREQHNRIGGLDVKARRILRRHAEADGVNLSPSSPARTRNLTVWLREHPELVREVRTQSTTREGRRRRSEDQYIYRHRKAMREKAGEA
>NC_008618.1|WP_113736360.1|1571548_1572037_-|hypothetical-protein
MPPPIPSFAARPAPGRIWLVGAHGGSGCSTIRMSAKDRYVDAGRALPVSTDPRVPSRIVLCAMCTGRGLESLRNLLANWNDGLFGASVLMGVAVTMPSPRTPRELRRGTLLVGSAAPALWRLPFIRNLDLDGFPEAYPHAYERMLKDLNGSMQTADGISGNG
>NC_008618.1|WP_041777382.1|1571020_1571512_+|LURP-one-related-family-protein
MSTMYVKQKVFSIGEKFTVTDIAGNPRYYVRGSFLAIPKSFVITSVDGIEVARIEKEVFSLLPRFTVTMEGLTQATISKRFTFLRDRYDIDVPGLQITGDWWDLSFEASMDGAKVAYIRQKLLSWGDSYEVRVLDDRLDVLILALVIAIDRVKADEAAANTSA
>NC_008618.1|WP_041777527.1|1570487_1570826_-|hypothetical-protein
MMLERIASAADTVQDAAYGMVLADLQNPRACLPPGFSSPVTTALGWVKALGLVVAIVALIRIGVHVLRQQGDGVPDRDDTFDKIINWVVGIFIVAGALAFMSALGLSIAESC
>NC_008618.1|WP_011743572.1|1568359_1570483_-|hypothetical-protein
MASRRKGRLSAMLLALVAVFSLTACGGPNFDALKDDLKFGDEEIADTQTVYSMKIPKNGVGKLIRSNQIAYAKATWANAINPYFNGNARKYLASVPANQCVALANTYQEETPDAGPWNWNAANNSCDKTRKLSWLEKTMWTMYEQQSDDTIEWLSTTRNTLVAAPGTVDTLQNSILPMYDTWDTNVNKYLNVAQAVLVVAAAISLMILAARIIWQIGNGSAGMDGHLLGRIGWIFLGVFMGSSAASIALTFFKQANMTRTVVNGVPTATAGRSTPALTSWTPGAGTSFFVSDWVRLQVDPFLIIAAVCGVIAAGFKLITTQEGRDLVPLGKAFMWSMLTSVCLAGFVNLFQGTVDTWTAGVLRSASDMMKSAWSHNTLAASEFFNLDWPIALVLTIVMWFCNLISKVFCYLRAGLLPILVGIAPVWAAMSWMETGRQAFGKVMGWLFAFLMYKPVAALVMATGCAIMTTAGAGDDSQAITLMLTISVIVLLPAMIRLIVPSVAGSIGGGGVIPSMLGGMAGMGVMAAGGVLKAGAKGVMGATGALSGKVKPSVPNGAKRAVGSGENAGASGIGSGISAPGRPGSEVAKGGGETMFGGSSMPDGTRAAGSVPKGAVGSSASNGVKTSMADDGTGSVDAPSGGGIPAAPPSSGSGGVRPSSVAQQPRKDVGRRVSEPSAIQRVRAEFGSVPDGGPHGANRSGARKTKEF
>NC_008618.1|WP_011743571.1|1566871_1568359_-|hypothetical-protein
MASNTTYGDWMRPIAGGIRNIGRPLTFAGLGVLVATLMLSMVNVVAAIATAVVGIGVIAILAMRDREHRNVLDRTVERRTWLAESRKGRALYRSGMLAPVESGQCRLPGILSRVSLVEANDGFGNRLALIRHGHTGEYSLPFSCQPQGASLADDDVEDAYVASWAGLLESLGGEMGVAQLSVTVDTSPDSGVRFRRNLSKRTVQDAPELAARAMAQIMDLYATGGASSSVILTLTFRYVDARNGRFLEPDEAARRIGQLVPNLIRRIADAGGGTARTLTIDEISRMVRVAYDPGAQDSLEQTDGRPWIEWEDAGPVACEAGWDHYRHDSGVSRTWEMCDPPKSNVTSSTLARLLGPLADCDRKRVTVVFHILPPDKTAFMAEQNRQRAANQVSQEKRASISAMSQINKANRQAIEIDRGAAIVFFGLLVTATVRAGDDERIRLEQAAHAVEGAAGSAKIDLRPCYGAQDTAFAASLPLGLNLRTYSPPNALTALS
>NC_008618.1|WP_041777381.1|1565315_1566725_-|ATPase
MPTVDEFFGTSTQVCGGFWPFVTDMALPVEGVPIGRSMATGAGVCCDPISWFRAGIIEQPSMFVMGLPAIGKSTFVRRQAWGMSALGMNAIIPGDLKPDYAELVRLLGGQVIRLGSGLGSINPLDPGGIHDALKRLAGKSREDLLADYHERRSALMEVLLTISRTGREEGRRTVSDVESNILATALRILYERTKNDPEPPVIPDLRDLVKQGTPEIRAAAVFDDPENDQAYARAVRDLLSSLHGLANPMGRFGRLFCEQTTERIELSRPVDFDISALAQAGDDVVAAVLAATWSSAFAAKNATDMMAEAGLLPRRNHVIIMDEMHRALRASPLMVDRLDLLTRLNRQWGVGQIMITHTFADLLCLDTQAQNNKARGFVERSKIKVLGALSRTEIQHYLRGESGLPISMREEDMLSDWATPTNFDANASFKGVGKFLIKLGGLPGIPVTVQMCGIEHSGFNDTNAKWNRR
>NC_008618.1|WP_050731459.1|1564902_1565319_-|hypothetical-protein
MIAIVPHAITDTGLGVSIRLAIRDLAVVNGYGDALSVRHVRRGADDGLDRPLDAASVAIGARGFTLLFCPRAVMEPNAFIALVIDHAGRIIWQEDTDHPSYYESYDLARRAFARLHRFERENRRRVMTPSRRTKKDGQ
>NC_008618.1|WP_113736362.1|1564396_1564873_-|histidine-kinase
MPDLLDPTLDELELLAESIGEKADGFELDMPDGSTARGYRTPGVHGPLPDGWHVYDIMECDSDRWTPYPRYEDIDEDEREDGENGRYETSLAVDDNPGPHFVDQGDPFVTRYDLTGVDWEFDEDHCGYDGTQLSDDIMRLSIPVISESACGRADSMIR
>NC_008618.1|WP_041777525.1|1563205_1564243_-|hypothetical-protein
MAKRTISETELRQWIDEWGEESHDDILSSDDESDIANRILEHHTGGSYPDDDDWDEAWKALRDIIRPALKHVDGVFPDGAKALARYVRELGQGIDPETGEEAGRRDDEKPRRTSFRIRAIAHADPVEEPCLDKIIQAAEEDYRHDVLAGGDTARMDWLSAAAYEWRRLMLEPHAPTDPVTDPSALAIIAVGLRHAPDATRAMMATDVLSPDLPDMRELRGIATTAEQDVPVVTLIPNLIGQWPDAIPDRDSILDRDHAAWRILSPIHMNASTPVEGRIEGLLSMFDHVEYDGSTHGMEREHAERALRFDPSDRFASAALDAATGPNEMTGLVECSDHVEDGRMKR
>NC_008618.1|WP_167524176.1|1574652_1574790_-|hypothetical-protein
MYIVFAAAALVCLGLLLPVLSLIATVLSALVSLLRSIAKLIGGGR
>NC_008618.1|WP_143245385.1|1576069_1576918_-|hypothetical-protein
MLVVIPKGVILSDGRNLGGWNLSVPASPWALMQKRTGRPVNIGLRSDQPVELFKGRGAKRQVISLASPEELRAALNEHRDRMLGQNTVRDKPAAIAYNVIPAFGQGAGGGLADAAPQSYEPANDEGMRLFNDLAFDVGFVSRMDMLVSGFADDCIHNRYDPEAALDRTRSLTEQATRLLEPLSGVVFSDMAIDCAANLALSAVTDAINGYINELTDRGEGNPSIIAANHAEYVEDAQTCLNTERCLRMFTTAYGKTAETDVFGDTMSIENLSIGPNMMTRLR
>NC_008618.1|WP_041777387.1|1577864_1578710_+|amino-acid-ABC-transporter-substrate-binding-protein
MRRNKLFTTVVAALVAVGSLGALAGCGTANAKESDNGVKTVKFVLESQDPPYSYADKNGNPAGFDLTVLKAIDKKLDNYKFEYSVIDYQTALIGTKQGKYDALIGAFFETPARAKQYLLSKPYNYFFMNLIVPEDSKVESLKDLDGKTLDPIVPTDGRYVAIQNWLKRNPDVKIKVPTVTNQETFQDMFNAVHDGTYDAVYLSKAQYDGVADTLGYKLKVTDPVDAAGTVILYNRKNGDVQKAIDEQIDALIKDGTLGKISEKYFKQDNFQKARELGALKD
>NC_008618.1|WP_041777388.1|1578734_1579424_+|amino-acid-ABC-transporter-permease
MPSDLLTGVLPRILQYLPATLLYWIVPSVLALFFGTLLCIVRVGRHNVLYWLCTVFISFFRGTPGIVQIYLVFFGLPKVFYLFGLDIDDWDPGVFFIIATAMNLSCFICETLRGGYLGVDKGQIETGLSIGYNRVQNFIHVIAPQTLKVAVLNLKNLEIDVLKDTSVAYTIGTVEILGSAKAIISAQYGTGQLWILGLVAIIYFVLCSLIEVGFTFASHRMERYERRYA
>NC_008618.1|WP_011743580.1|1579423_1580134_+|amino-acid-ABC-transporter-permease
MELDYDFMVTDFPTVLAGLPKTLILTFWSTLFALLIALIFGCVILSNAPAFKQLVVALNTFIKGVPLAVQLLFCYYAVPFVAKWLGSIGIYDFNPRHISYFPAAVVAIACNFGAYITDVVVSSVKAVDRGQIESAQSVGMTGLQTALHVIVPQAVVISLPSMTNYFIWLLKGTSLASLINVTEMLITAQISAADGYQYLEAYIDAALIYWVVCAAIEFGSERLFKRVGFFLKPARA
>NC_008618.1|WP_011743581.1|1580187_1580685_+|L-2-amino-thiazoline-4-carboxylic-acid-hydrolase
MAFENNTPHLRSKTVDATREISERRAATISRMVDEASKRGLDDEFAYDAVADYGRDNAKEFRKTLKDPDSFQEFIDNFGTDHNREIYEMETVKKTDDELEIDFHYCPYVTQWVRQGKNPQQIARLCEIAMAGDHAFAAQFPHVKFSLEGTIADGKPVCVLRFKKQ
>NC_008618.1|WP_011743582.1|1580700_1581468_+|amino-acid-ABC-transporter-ATP-binding-protein
MTGHDTGETVVSLKGIRKSFSGNEILKGVDLEVRKGEVLAILGPSGSGKTTLLRCVNALERPDAGIVRVDGTTIDFSGKVPNKQILELRRKTAMVFQNYNLFKNKTVLDNVTQGLTVVRGVAKNEARERALKALSSVGMDGYEDRYPVQLSGGQQQRVSIARALAIRPDVILLDEPTSALDPELVSDVNDVITKVAGTGVTMILVTHEIRFARNVASRVVFVEQGNIIEEGTPEQVIDNPQSPRIKEFLSKMMAK
>NC_008618.1|WP_041777532.1|1583245_1584328_-|CHAP-domain-containing-protein
MKGLFRRRVLPIVAMLCIVLTTGACNPTDVLHFLAGCKDGSSSAESSSSMVASTAKGDWTGLVGKTEGEIKHMWPSHVAPCSGYNVLYGGSRLQCTWWACMRQRALGHDLGQGSWGDGGSWGASAKARGWKQGAKAGGIISWAPGSGGSDGLYGHVAVVEQVDGDNVHISEGGAGFRNSNGVAAIHTRVIPIHGTGATFWYPDGNDNAEPVAPDTSKRSSSSLAATSAKWTCSASSSNDSTSGAVNVKYNGNGYHASPEDAKGIAKQMIASGYKEWDNDNDWQALVWIWEHESGWRWNAENPTSGAYGIPQSYPASKLAAAGNDWKDNAATQIKWGLQYIKQRYGSPHQAKEFWLRNNAY
>NC_008618.1|WP_041777533.1|1584356_1585262_-|hypothetical-protein
MFLAFVFVISLGVAATYRMKRTGNDGDLGRVPSKSAQKEDVSPHGEYAGLKAAGVPVPGEWSRQSLLAVDGTQNSDGNGAALSPVGGDGGPVNVALETVNRILNPTQSDVEWDRTMRDLFQPDMAGLTHGPSNMARYWWQQRRFQPDRLCTGIAKDMLIIQSYDCSTDRMFQGQNTEAIKGTQYWWTGISFFDAPRSITEKIPSSTDPQTVISQYYDAVAFPMDDGVWYVTVACPAMSDHPYLDENGNELATEDDSAPSSKYWISVGSMVGVGTNQRPCRPVEITVGGQRPFWYIGADGSN
>NC_008618.1|WP_143245386.1|1585318_1585633_-|hypothetical-protein
MSHSNRARDTRRNISKAIRESQQSRMDALDALAQGLTEISAARIRLKELETHVEDLRVQAKNAGNTATDIRAVERIVNELALKRSEAPENDSKDMEEPSGMGDE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_008618_3	3.17\|1457200\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457200-1457233	34	NC_008618.1	858209-858242	0	1.0

1. spacer 3.17|1457200|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to position: 858209-858242, mismatch: 0, identity: 1.0

ggccaccgtcattcggatatgcggcaggcttgga	CRISPR spacer
ggccaccgtcattcggatatgcggcaggcttgga	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008618_3	3.13\|1456931\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1456931-1456964	34	GQ141189	Bifidobacterium phage Bbif-1, complete sequence	30923-30956	1	0.971
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	MH444512	Bifidobacterium phage Willi, complete genome	26719-26752	1	0.971
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	MK932884	Bifidobacterium phage PMBT6, complete genome	26719-26752	1	0.971
NC_008618_3	3.6\|1456462\|33\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1456462-1456494	33	MN693241	Marine virus AFVG_25M13, complete genome	35398-35430	6	0.818
NC_008618_3	3.27\|1457872\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457872-1457905	34	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1168151-1168184	6	0.824
NC_008618_3	3.27\|1457872\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457872-1457905	34	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	769876-769909	6	0.824
NC_008618_3	3.27\|1457872\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457872-1457905	34	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	427137-427170	6	0.824
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	AP017627	Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome	50895-50928	7	0.794
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP015091	Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence	187152-187185	7	0.794
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	653194-653227	7	0.794
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	505909-505942	7	0.794
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	562582-562615	7	0.794
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	712128-712161	7	0.794
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	357770-357804	7	0.8
NC_008618_3	3.15\|1457066\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457066-1457099	34	NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	482826-482859	8	0.765
NC_008618_3	3.15\|1457066\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457066-1457099	34	NZ_CP024309	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence	61862-61895	8	0.765
NC_008618_3	3.15\|1457066\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457066-1457099	34	NZ_CP013053	Sinorhizobium americanum CCGM7 plasmid B, complete sequence	443395-443428	8	0.765
NC_008618_3	3.15\|1457066\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457066-1457099	34	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	100223-100256	8	0.765
NC_008618_3	3.15\|1457066\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457066-1457099	34	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	102962-102995	8	0.765
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	327425-327458	8	0.765
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	400768-400801	8	0.765
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	259096-259129	8	0.765
NC_008618_3	3.43\|1458940\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1458940-1458973	34	NZ_CP015268	Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 1, complete sequence	62908-62941	8	0.765
NC_008618_3	3.43\|1458940\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1458940-1458973	34	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	18041-18074	8	0.765
NC_008618_3	3.43\|1458940\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1458940-1458973	34	NZ_CP015530	Rhodococcus sp. WB1 plasmid pWB1, complete sequence	6065-6098	8	0.765
NC_008618_3	3.47\|1459213\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1459213-1459246	34	NZ_CP040821	Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence	27852-27885	8	0.765
NC_008618_3	3.50\|1459414\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1459414-1459447	34	MT006237	Bifidobacterium phage BigBern1, complete genome	17709-17742	8	0.765
NC_008618_3	3.51\|1459481\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1459481-1459514	34	NZ_CP037868	Hydrogenophaga pseudoflava strain DSM 1084 plasmid pDSM1084, complete sequence	15288-15321	8	0.765
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	286125-286158	8	0.765
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	491066-491099	8	0.765
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	331854-331887	8	0.765
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	KT997858	Uncultured Mediterranean phage uvDeep-CGR2-KM19-C37, complete genome	31256-31289	8	0.765
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	205038-205071	8	0.765
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	755249-755282	8	0.765
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	95624-95657	8	0.765
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	96029-96062	8	0.765
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	94113-94146	8	0.765
NC_008618_3	3.72\|1460887\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460887-1460920	34	NZ_CP015738	Shinella sp. HZN7 plasmid pShin-02, complete sequence	73706-73739	8	0.765
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	85595-85629	8	0.771
NC_008618_3	3.6\|1456462\|33\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1456462-1456494	33	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1506752-1506784	9	0.727
NC_008618_3	3.7\|1456528\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1456528-1456561	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2156138-2156171	9	0.735
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1223742-1223775	9	0.735
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	MT771341	Gordonia phage DirtyBoi, complete genome	38272-38305	9	0.735
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1499327-1499360	9	0.735
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	908633-908666	9	0.735
NC_008618_3	3.27\|1457872\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457872-1457905	34	NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	31633-31666	9	0.735
NC_008618_3	3.59\|1460018\|32\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460018-1460049	32	NZ_CP011655	Citrobacter freundii strain CAV1741 plasmid pCAV1741-110, complete sequence	25758-25789	9	0.719
NC_008618_3	3.59\|1460018\|32\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460018-1460049	32	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	37380-37411	9	0.719
NC_008618_3	3.59\|1460018\|32\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460018-1460049	32	NZ_CP017724	Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 plasmid pSARB26_01, complete sequence	95611-95642	9	0.719
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	541737-541770	9	0.735
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP010991	Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence	42695-42728	9	0.735
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NZ_CP012186	Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence	163614-163647	9	0.735
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	MH019215	Streptomyces phage Yara, complete genome	41681-41714	9	0.735
NC_008618_3	3.71\|1460820\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460820-1460853	34	AB452990	Serratia phage KSP90 orf1 to orf11 genes for hypothetical protein, tail tube protein, portal protein, prohead core protein, prohead protease, scaffolding protein, major capsid protein, hypothetical proteins, partial and complete cds	1754-1787	9	0.735
NC_008618_3	3.71\|1460820\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460820-1460853	34	MF285619	Serratia phage 2050H1, complete genome	57613-57646	9	0.735
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	92538-92572	9	0.743
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	242331-242365	9	0.743
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP022424	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence	994-1028	9	0.743
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	615951-615985	9	0.743
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	438501-438535	9	0.743
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	205424-205458	9	0.743
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	289692-289726	9	0.743
NC_008618_3	3.73\|1460954\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460954-1460988	35	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	426906-426940	9	0.743
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1714052-1714085	10	0.706
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	452270-452303	10	0.706
NC_008618_3	3.16\|1457133\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457133-1457166	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1333481-1333514	10	0.706
NC_008618_3	3.17\|1457200\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1457200-1457233	34	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	274119-274152	10	0.706
NC_008618_3	3.45\|1459076\|36\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1459076-1459111	36	MH588547	Caulobacter phage CcrSC, complete genome	39583-39618	10	0.722
NC_008618_3	3.54\|1459682\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1459682-1459716	35	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	455921-455955	10	0.714
NC_008618_3	3.55\|1459750\|35\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1459750-1459784	35	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	455921-455955	10	0.714
NC_008618_3	3.66\|1460484\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460484-1460517	34	NC_013930	Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence	226983-227016	10	0.706
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	819745-819778	10	0.706
NC_008618_3	3.7\|1456528\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1456528-1456561	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2213907-2213940	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	MT818420	Microbacterium phage Gilda, complete genome	38775-38808	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	MK737941	Microbacterium phage Rachella, complete genome	38780-38813	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	MK801732	Microbacterium phage NarutoRun, complete genome	38754-38787	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	NC_047986	Microbacterium phage Krampus, complete genome	38789-38822	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	MK801731	Microbacterium phage Anakin, complete genome	38754-38787	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	MH271292	Microbacterium phage AnnaSerena, complete genome	38788-38821	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	MT522003	Microbacterium phage Rie18, complete genome	38277-38310	11	0.676
NC_008618_3	3.67\|1460551\|34\|NC_008618\|PILER-CR,CRISPRCasFinder,CRT	1460551-1460584	34	MT684592	Microbacterium phage Aesir, complete genome	38413-38446	11	0.676

1. spacer 3.13|1456931|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to GQ141189 (Bifidobacterium phage Bbif-1, complete sequence) position: , mismatch: 1, identity: 0.971

tgcccgtgacgcgaatcgcgtagccggtcaaacc	CRISPR spacer
tgcccgtgacgcgaatcgcgtagccggtcaagcc	Protospacer
*******************************.**

2. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MH444512 (Bifidobacterium phage Willi, complete genome) position: , mismatch: 1, identity: 0.971

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
tgccacgtccgaccatcacgccgacctcgtcgcg	Protospacer
.*********************************

3. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MK932884 (Bifidobacterium phage PMBT6, complete genome) position: , mismatch: 1, identity: 0.971

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
tgccacgtccgaccatcacgccgacctcgtcgcg	Protospacer
.*********************************

4. spacer 3.6|1456462|33|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MN693241 (Marine virus AFVG_25M13, complete genome) position: , mismatch: 6, identity: 0.818

atggaaaccccgcgcaattccga-taattacgat	CRISPR spacer
atggaatccccgcgctattccgattaaatggga-	Protospacer
****** ******** ******* *** *. **

5. spacer 3.27|1457872|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 6, identity: 0.824

---ccaggcacaggacggcaccaaccgcaccgtcatg	CRISPR spacer
ccgccagg---acgacggcaccaaccgcaccgccgtg	Protospacer
   *****   * *******************.*.**

6. spacer 3.27|1457872|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 6, identity: 0.824

---ccaggcacaggacggcaccaaccgcaccgtcatg	CRISPR spacer
ccgccagg---acgacggcaccaaccgcaccgccgtg	Protospacer
   *****   * *******************.*.**

7. spacer 3.27|1457872|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 6, identity: 0.824

---ccaggcacaggacggcaccaaccgcaccgtcatg	CRISPR spacer
ccgccagg---acgacggcaccaaccgcaccgccgtg	Protospacer
   *****   * *******************.*.**

8. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to AP017627 (Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome) position: , mismatch: 7, identity: 0.794

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
caccgtctacgaccatcacgccgaccccgccgcg	Protospacer
*.**.. * *****************.**.****

9. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 7, identity: 0.794

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
gcgtgccgt-cgatcatcacgccgacctcgccgct	Protospacer
 **.  *** ***.****************.***

10. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.794

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
gcgccgc-ctcgaacagcacgccgacctcgtcgcc	Protospacer
 ****.* ..*** ** *****************

11. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.794

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
gcgccgc-ctcgaacagcacgccgacctcgtcgcc	Protospacer
 ****.* ..*** ** *****************

12. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.794

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
gcgccgc-ctcgaacagcacgccgacctcgtcgcc	Protospacer
 ****.* ..*** ** *****************

13. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.794

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
gcgccgc-ctcgaacagcacgccgacctcgtcgcc	Protospacer
 ****.* ..*** ** *****************

14. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 7, identity: 0.8

ctcgccgaccggctcaccgacctga-ccaacctcga	CRISPR spacer
gccgccgaccggctcaccgccctggcccaatcccg-	Protospacer
 .***************** ****. ****.*.**

15. spacer 3.15|1457066|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013109 (Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence) position: , mismatch: 8, identity: 0.765

gcgtggaagcagcttttcgtcagctatggcgcaa	CRISPR spacer
atgttcacgcagctttccgtcagccatggcgcca	Protospacer
..**  * ********.*******.******* *

16. spacer 3.15|1457066|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024309 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence) position: , mismatch: 8, identity: 0.765

gcgtggaagcagcttttcgtcagctatggcgcaa	CRISPR spacer
atgttcacgcagctttccgtcagccatggcgcca	Protospacer
..**  * ********.*******.******* *

17. spacer 3.15|1457066|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013053 (Sinorhizobium americanum CCGM7 plasmid B, complete sequence) position: , mismatch: 8, identity: 0.765

gcgtggaagcagcttttcgtcagctatggcgcaa	CRISPR spacer
atgttcacgcagctttccgtcagccatggcgcca	Protospacer
..**  * ********.*******.******* *

18. spacer 3.15|1457066|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 8, identity: 0.765

gcgtggaagcagcttttcgtcagctatggcgcaa	CRISPR spacer
atgttcacgcagctttccgtcagccatggcgcga	Protospacer
..**  * ********.*******.*******.*

19. spacer 3.15|1457066|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 8, identity: 0.765

gcgtggaagcagcttttcgtcagctatggcgcaa	CRISPR spacer
atgttcacgcagctttccgtcagccatggcgcga	Protospacer
..**  * ********.*******.*******.*

20. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
agctgacgccctgatcgcccgccgccaggtcgga	Protospacer
 *.   * *********.**** ***********

21. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.765

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
agctgacgccctgatcgcccgccgccaggtcgga	Protospacer
 *.   * *********.**** ***********

22. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 8, identity: 0.765

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
cgtcctcggcctgatcgtgcgcggcctggtcggg	Protospacer
*** ..*  ********* ******* ******.

23. spacer 3.43|1458940|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015268 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.765

gccacaccgagcgcaacgggtcgctgctgaccct	CRISPR spacer
tggacaccgagcccaacgagtcgctgctggcaca	Protospacer
   ********* *****.**********.* *

24. spacer 3.43|1458940|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.765

gccacaccgagcgcaacgggtcgctgctgaccct	CRISPR spacer
tggacaccgagcccaacgagtcgctgctggcaca	Protospacer
   ********* *****.**********.* *

25. spacer 3.43|1458940|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 8, identity: 0.765

gccacaccga----gcgcaacgggtcgctgctgaccct	CRISPR spacer
----ccgcgaagttgcgcaacgaatcgctgctgaccct	Protospacer
    *  ***    ********..**************

26. spacer 3.47|1459213|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040821 (Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence) position: , mismatch: 8, identity: 0.765

ccttccacgatgcgatcacctcgggcgtgaagac	CRISPR spacer
tcttccaggatgcgatcaccgcgggcttcatctc	Protospacer
.****** ************ ***** * *   *

27. spacer 3.50|1459414|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MT006237 (Bifidobacterium phage BigBern1, complete genome) position: , mismatch: 8, identity: 0.765

aaatacgcaaagtcaagatgctggtgctgcgaga	CRISPR spacer
aagccaagaaagtcaagatgctggtcctgcggga	Protospacer
**..  . ***************** *****.**

28. spacer 3.51|1459481|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037868 (Hydrogenophaga pseudoflava strain DSM 1084 plasmid pDSM1084, complete sequence) position: , mismatch: 8, identity: 0.765

ccgctccccacgcatcggcgtccatcttgcgctt	CRISPR spacer
cagggatcaacgcatcggcgtccatcttgccctg	Protospacer
* *   .* ********************* **

29. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
tgtaaccggcgacgatcacgacgacctcgtcgcg	Protospacer
.*. **   **** ****** *************

30. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 8, identity: 0.765

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
ggtcatcagcgaccagcacgccgacctggtcgcg	Protospacer
 *.**.   ****** *********** ******

31. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
gtgccgc-ctcgaacagcacgccgacctcgtcgcc	Protospacer
 .***.* ..*** ** *****************

32. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to KT997858 (Uncultured Mediterranean phage uvDeep-CGR2-KM19-C37, complete genome) position: , mismatch: 8, identity: 0.765

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
cttcgagccggacaatcacgccgtcctcgtcgcg	Protospacer
* .*. *.* *** ********* **********

33. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
cgagcacg-ccgaccatcaggccgagctcgtcgat	Protospacer
  . **** ********** ***** *******

34. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.765

-cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
gtgccgc-ctcgaacagcacgccgacctcgtcgcc	Protospacer
 .***.* ..*** ** *****************

35. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 8, identity: 0.765

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
catcgccgcgtagcagtcgcgcgtcgcaagcccc	Protospacer
**********.***********.***. .. *.*

36. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.765

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
catcgccgcgtagcagtcgcgcgtcgcaagcccc	Protospacer
**********.***********.***. .. *.*

37. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.765

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
catcgccgcgtagcagtcgcgcgtcgcaagcccc	Protospacer
**********.***********.***. .. *.*

38. spacer 3.72|1460887|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 8, identity: 0.765

cacgga---cggctggtatacggcggccgaggtacgg	CRISPR spacer
---gggtcccggctggtacacgccggccgaggttctg	Protospacer
   **.   *********.*** ********** * *

39. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 8, identity: 0.771

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
ctcgcccgccggctcaccgacctgaccgtgatcac	Protospacer
****** .*******************.   **.

40. spacer 3.6|1456462|33|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.727

atggaaaccccgcgcaattccgataattacgat	CRISPR spacer
ggcgacggtccgcgaaattccgatgattacgat	Protospacer
.  ** . .***** *********.********

41. spacer 3.7|1456528|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ttaccgtgacgggcaccgccacgtacgtcaaccc	CRISPR spacer
tggcggtgacggccaccgccacctacgtcgcgct	Protospacer
* .* ******* ********* ******.  *.

42. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.735

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
cttcgtcgacctgatcgtgcgcggccagatcggc	Protospacer
* *  .*  ********* *********.****

43. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MT771341 (Gordonia phage DirtyBoi, complete genome) position: , mismatch: 9, identity: 0.735

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
cgaccgcgggctgatcctgcgcggccaggtcgga	Protospacer
**  . *   ****** * ***************

44. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.735

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
cttcgtcgacctgatcgtgcgcggccagatcggc	Protospacer
* *  .*  ********* *********.****

45. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
cttcgtcgacctgatcgtgcgcggccagatcggc	Protospacer
* *  .*  ********* *********.****

46. spacer 3.27|1457872|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012265 (Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaggcacaggacggcaccaaccgcaccgtcatg	CRISPR spacer
tcaggcaccggacgtcaccaaccgcggcacgctg	Protospacer
.******* ***** **********. *..  **

47. spacer 3.59|1460018|32|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011655 (Citrobacter freundii strain CAV1741 plasmid pCAV1741-110, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgcgtggctatcgcgccatttgcgagac	CRISPR spacer
caggcgcttggctaccgcgccatcacccaacg	Protospacer
******* ******.********.  * *.

48. spacer 3.59|1460018|32|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgcgtggctatcgcgccatttgcgagac	CRISPR spacer
caggcgcttggctaccgcgccatcacccaacg	Protospacer
******* ******.********.  * *.

49. spacer 3.59|1460018|32|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017724 (Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 plasmid pSARB26_01, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgcgtggctatcgcgccatttgcgagac	CRISPR spacer
caggcgcttggctaccgcgccatcacccaacg	Protospacer
******* ******.********.  * *.

50. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
tgtagccggcgacgatcacgacgacctcgtcgcg	Protospacer
.*. .*   **** ****** *************

51. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 9, identity: 0.735

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
ccttgcgcacgaccagcacgccgaccccgtcgcc	Protospacer
* ...**. ****** **********.******

52. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012186 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence) position: , mismatch: 9, identity: 0.735

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
ccttgcgcacgaccagcacgccgaccccgtcgcc	Protospacer
* ...**. ****** **********.******

53. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MH019215 (Streptomyces phage Yara, complete genome) position: , mismatch: 9, identity: 0.735

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
cgtcggcaccgagcatcacgccgacctcctcgaa	Protospacer
**.*.   **** *************** *** .

54. spacer 3.71|1460820|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to AB452990 (Serratia phage KSP90 orf1 to orf11 genes for hypothetical protein, tail tube protein, portal protein, prohead core protein, prohead protease, scaffolding protein, major capsid protein, hypothetical proteins, partial and complete cds) position: , mismatch: 9, identity: 0.735

cacacgccacattcatcaacgccatcaagggaga	CRISPR spacer
aagacgccacagtcatctacgccatcactcgtgc	Protospacer
 * ******** ***** *********   * *

55. spacer 3.71|1460820|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MF285619 (Serratia phage 2050H1, complete genome) position: , mismatch: 9, identity: 0.735

cacacgccacattcatcaacgccatcaagggaga	CRISPR spacer
aagacgccacagtcatctacgccatcactcgtgc	Protospacer
 * ******** ***** *********   * *

56. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
agcttcgaccggctgaccgacctgcccaaccgctg	Protospacer
  * .********* ********* ****** * .

57. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
agcttcgaccggctgaccgacctgcccaaccgctg	Protospacer
  * .********* ********* ****** * .

58. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022424 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
aactacgacccgctcaccgacctgcccaaccgcac	Protospacer
  *  ***** ************* ****** *.

59. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
agcttcgaccggctgaccgacctgcccaaccgctg	Protospacer
  * .********* ********* ****** * .

60. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
agcttcgaccggctgaccgacctgcccaaccgctg	Protospacer
  * .********* ********* ****** * .

61. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
agcttcgaccggctgaccgacctgcccaaccgctg	Protospacer
  * .********* ********* ****** * .

62. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
agcttcgaccggctgaccgacctgcccaaccgctg	Protospacer
  * .********* ********* ****** * .

63. spacer 3.73|1460954|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ctcgccgaccggctcaccgacctgaccaacctcga	CRISPR spacer
agcttcgaccggctgaccgacctgcccaaccgctg	Protospacer
  * .********* ********* ****** * .

64. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
agctcgccccctgatcgcccgcggcgaggtcgat	Protospacer
 *. . *.*********.******* ******.

65. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 10, identity: 0.706

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
cgcgcagtccctgatcgtccggggccagctccag	Protospacer
**...  ************** ****** ** ..

66. spacer 3.16|1457133|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.706

cgtatcctccctgatcgtccgcggccaggtcgga	CRISPR spacer
agctcgccccctgatcgcccgcggcgaggtcgat	Protospacer
 *. . *.*********.******* ******.

67. spacer 3.17|1457200|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ggccaccgtcattcggatatgcggcaggcttgga	CRISPR spacer
ggccaccgtcatccgaatatgcggagcagtgcca	Protospacer
************.**.******** . . *   *

68. spacer 3.45|1459076|36|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 10, identity: 0.722

caaccaagtggccgaagcgctgctcggagccggcaa	CRISPR spacer
cggcgaagtggccgaagccctgctcgaagcccatcg	Protospacer
*..* ************* *******.**** .. .

69. spacer 3.54|1459682|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 10, identity: 0.714

gcggcgctggtgaaccgtatcggcggtacttatgt	CRISPR spacer
gcggcgctgcagaaccgtatcggcgcgctgggtct	Protospacer
*********  **************   .  .* *

70. spacer 3.55|1459750|35|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 10, identity: 0.714

gcggcgctggtgaaccgtatcggcggtacttatgt	CRISPR spacer
gcggcgctgcagaaccgtatcggcgcgctgggtct	Protospacer
*********  **************   .  .* *

71. spacer 3.66|1460484|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NC_013930 (Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence) position: , mismatch: 10, identity: 0.706

cgccacgtccgaccatcacgccgacctcgtcgcg	CRISPR spacer
ccatccgtccgaacttcacgccgacctcggaaag	Protospacer
*  . ******* * **************  . *

72. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 10, identity: 0.706

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
cattgccgcgcagcaggcgcgcatacaccggccc	Protospacer
***.************ *******   . ..*.*

73. spacer 3.7|1456528|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

ttaccgtgacgggcaccgccacgtacgtcaaccc	CRISPR spacer
acgccgtggcgggcaccgccatgtacgcgatggt	Protospacer
 ..*****.************.*****. *   .

74. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MT818420 (Microbacterium phage Gilda, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

75. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MK737941 (Microbacterium phage Rachella, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

76. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MK801732 (Microbacterium phage NarutoRun, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

77. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to NC_047986 (Microbacterium phage Krampus, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

78. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MK801731 (Microbacterium phage Anakin, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

79. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MH271292 (Microbacterium phage AnnaSerena, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

80. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MT522003 (Microbacterium phage Rie18, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

81. spacer 3.67|1460551|34|NC_008618|PILER-CR,CRISPRCasFinder,CRT matches to MT684592 (Microbacterium phage Aesir, complete genome) position: , mismatch: 11, identity: 0.676

catcgccgcgcagcagtcgcgcatcgttgaactc	CRISPR spacer
gttcgccgcgccgaagtcgcgcatcgccatgacc	Protospacer
  ********* * ************... . .*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008618

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection