CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010296	Microcystis aeruginosa NIES-843, complete genome	38 crisprs	csa3,cas14j,Cas14c_CAS-V-F,RT,cas14k,WYL,cas3,csc2gr7,csc1gr5,cas8b5,cas7,cas5,cas6,cas4,cas1,cas2,c2c9_V-U4,2OG_CAS,Cas14u_CAS-V,DinG	9	70	0	0

1. NC_010296

CRISPR-Cas detection and classification

Crispr_ID: NC_010296_1

• CRISPR_ID: NC_010296_1
• CRISPR_location: 57117-57236
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_1

Consensus_repeat	Method
GGGTGTGGGGTGTAGGGTTTTACCGATTTTGAGG	CRISPRCasFinder

spacers of NC_010296_1

>1.1|57151|52|NC_010296|CRISPRCasFinder
TAGTCAGTTACCTGGGGTCTGCTGAAAAAGTTTTTCCTAGGGGCAGGGTGTA

CRISPR arrays and Neighbor proteins around NC_010296_1

CRISPR arrays

The CRISPR arrays of NC_010296_1

>merge|NC_010296|1|57117-57236|CRISPRCasFinder
GGGTGTGGGGTGTAGGGTTTTACCGATTTTGAGGTAGTCAGTTACCTGGGGTCTGCTGAAAAAGTTTTTCCTAGGGGCAGGGTGTAGGGTGTGGGGTGTGGGGTTTTACCGATTTTGAGG

>NC_010296|1|1|57117-57236|CRISPRCasFinder
GGGTGTGGGGTGTAGGGTTTTACCGATTTTGAGG	TAGTCAGTTACCTGGGGTCTGCTGAAAAAGTTTTTCCTAGGGGCAGGGTGTA
GGGTGTGGGGTGTGGGGTTTTACCGATTTTGAGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012263827.1|47949_48909_+|cyanobactin-biosynthesis-PatC/TenC/TruC-family-protein	unknown	unknown	gnl|CDD|275240
NC_010296.1|WP_041803577.1|49280_50072_-|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|368559
NC_010296.1|WP_148204779.1|64127_65234_+|calcium-binding-protein	unknown	unknown	gnl|CDD|380205
NC_010296.1|WP_012263845.1|71387_72836_+|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl|CDD|214349
NC_010296.1|WP_012263836.1|59332_59554_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NC_010296.1|WP_002761344.1|54014_54215_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_008205609.1|52525_53551_+|aldo/keto-reductase	unknown	unknown	gnl|CDD|381306
NC_010296.1|WP_002760440.1|70533_70674_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002761352.1|59706_61065_+|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl|CDD|234628
NC_010296.1|WP_002797484.1|57484_57727_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_148204717.1|57925_59148_+|ISAzo13-like-element-ISMae28-family-transposase	unknown	unknown	gnl|CDD|369439
NC_010296.1|WP_041803581.1|56559_57051_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012263842.1|67538_68150_+|DUF3318-domain-containing-protein	unknown	unknown	gnl|CDD|378716
NC_010296.1|WP_012263821.1|44113_44263_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002753002.1|47568_47826_+|cyanobactin-biosynthesis-system-PatB/AcyB/McaB-family-protein	unknown	unknown	gnl|CDD|211943
NC_010296.1|WP_002797475.1|49053_49209_+|anacyclamide/piricyclamide-family-prenylated-cyclic-peptide	unknown	unknown	gnl|CDD|275239
NC_010296.1|WP_041803579.1|53547_53955_+|gamma-glutamylcyclotransferase	unknown	unknown	gnl|CDD|225016
NC_010296.1|WP_012263843.1|68265_70377_+|DNA-helicase-RecQ	unknown	unknown	gnl|CDD|223588
NC_010296.1|WP_173351095.1|40980_42375_-|transposase	unknown	unknown	gnl|CDD|379252
NC_010296.1|WP_012263837.1|61068_61944_+|CbiQ-family-ECF-transporter-T-component	unknown	unknown	gnl|CDD|367052

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012263827.1|47949_48909_+|cyanobactin-biosynthesis-PatC/TenC/TruC-family-protein	gnl|CDD|275240	TIGR04447, hypothetical_protein, cyanobactin cluster PatC/TenC/TruC protein. Members of this family usually are small proteins (PatC, TenC, TruC) of unknown function in cyanobactin (prenylated cyclic peptide) biosynthesis clusters, where a different small protein is a known cyanobactin precursor (patellamide, anacyclamide, piricyclamide, etc). They may instead be the C-terminal domain of a longer protein that otherwise consists mostly of lectin-like or VWF type A domains, in similar context. Similar to the cyanobactin precursors, members of this family have two very strongly conserved regions separated by a hypervariable region, suggesting these proteins may undergo a similar maturation.	2.51371e-12
NC_010296.1|WP_041803577.1|49280_50072_-|Uma2-family-endonuclease	gnl|CDD|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.37658e-10
NC_010296.1|WP_012263845.1|71387_72836_+|F0F1-ATP-synthase-subunit-beta	gnl|CDD|214349	CHL00060, atpB, ATP synthase CF1 beta subunit.	0
NC_010296.1|WP_012263836.1|59332_59554_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.06582e-11
NC_010296.1|WP_148204779.1|64127_65234_+|calcium-binding-protein	gnl|CDD|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	8.39435e-16
NC_010296.1|WP_008205609.1|52525_53551_+|aldo/keto-reductase	gnl|CDD|381306	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR). The AKR9A family includes Aspergillus nidulans sterigmatocystin biosynthesis dehydrogenase StcV, Aspergillus flavus norsolorinic acid reductase (NOR), and Phanerochaete chrysosporium aryl-alcohol dehydrogenase [NADP(+)] (AAD), are founding members of aldo-keto reductase family 9 member A1-3 (AKR9A1-3), respectively. StcV may be involved in the dehydration of 5'-hydroxyaverantin to form averufin. NOR is involved in aflatoxin biosynthesis. AAD (EC1.1.1.91) is involved in lignin degradation and reduces aromatic benzaldehydes to their respective alcohols in the presence of NADP(H). The AKR9B family includes Saccharomyces cerevisiae aryl-alcohol dehydrogenases AAD14p, AAD3p, AAD4p, and AAD10p, which are founding members of aldo-keto reductase family 9 member B1-4 (AKR9B1-4), respectively.	0
NC_010296.1|WP_002761352.1|59706_61065_+|ribosome-biogenesis-GTPase-Der	gnl|CDD|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_010296.1|WP_012263843.1|68265_70377_+|DNA-helicase-RecQ	gnl|CDD|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	0
NC_010296.1|WP_012263837.1|61068_61944_+|CbiQ-family-ECF-transporter-T-component	gnl|CDD|367052	pfam02361, CbiQ, Cobalt transport protein. This family consists of various cobalt transport proteins Most of which are found in Cobalamin (Vitamin B12) biosynthesis operons. In Salmonella the cbiN cbiQ (product CbiQ in this family) and cbiO are likely to form an active cobalt transport system.	1.14548e-28
NC_010296.1|WP_148204717.1|57925_59148_+|ISAzo13-like-element-ISMae28-family-transposase	gnl|CDD|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	2.7507e-80
NC_010296.1|WP_002753002.1|47568_47826_+|cyanobactin-biosynthesis-system-PatB/AcyB/McaB-family-protein	gnl|CDD|211943	TIGR04220, hypothetical_protein_L8106_29040, cyanobactin biosynthesis protein, PatB/AcyB/McaB family. Members of this protein family are small (~ 80 amino acids) and occur in biosynthesis clusters for cyanobactins, a type of ribosomal natural product, thiazole/oxazole-modified microcin (TOMM). The function of this protein family is unknown, and the recognized cyanobactin precursors (e.g. microcyclamides and patellamides) are encoded by a different protein (see TIGR03678). In this protein family, however, a core region of about 62 amino acids (modeled) is followed by a hypervariable region of 5 to 23 amino acids, with hallmarks of possible cyclodehydratase modification sites. The hallmarks include Cys residues flanked by Gly, and variable length Ser-rich tripeptide repeats. Further, members of this family were shown dispensible for patellamide biosynthesis, and two may occur in a cluster. Therefore, this family may represent a precursor of another type of ribosomal natural product.	4.78455e-32
NC_010296.1|WP_002797475.1|49053_49209_+|anacyclamide/piricyclamide-family-prenylated-cyclic-peptide	gnl|CDD|275239	TIGR04446, anacyclamide_precursor, prenylated cyclic peptide, anacyclamide/piricyclamide family. Members of this protein family occur primarily in Cyanobacteria. They average about 50 residues in length and are the ribosomally translated precursors of peptide natural products whose modifications include cleavage, cyclization, and prenylation. Sequences are well-conserved in the N-terminal region. They are nearly invariant over the last eight residues, but hypervariable just before that stretch. A related family, often in a similar genome context, is TIGR03678.	4.52755e-20
NC_010296.1|WP_012263842.1|67538_68150_+|DUF3318-domain-containing-protein	gnl|CDD|378716	pfam11780, DUF3318, Protein of unknown function (DUF3318). This is a bacterial family of uncharacterized proteins.	4.4826e-69
NC_010296.1|WP_041803579.1|53547_53955_+|gamma-glutamylcyclotransferase	gnl|CDD|225016	COG2105, COG2105, Uncharacterized conserved protein [Function unknown].	2.72143e-17
NC_010296.1|WP_173351095.1|40980_42375_-|transposase	gnl|CDD|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.95255e-37

Protein sequences

>NC_010296.1|WP_041803581.1|56559_57051_-|hypothetical-protein
MFVIQRADIIKKAIQLGVPSLNLQSSPAQLGTAIIQHWNEKIRSSQTAQNVINSYEGILLKNREGNEYVYCEYPLNPLDPNVFSWAWAIDKKTGGVGAGLQGSIAGKTQLVWYKNQKQLFRSRTIPAAAIRLRIERTRLTIDRYVETIFAALQTQTNTQDFVP
>NC_010296.1|WP_002761344.1|54014_54215_+|hypothetical-protein
MYLLLEVASGKFPVYFVAVYVVGFLAAVTIGSIAWYNSKRPVGWEDAQRPDIVPEVKTEVDSDSQS
>NC_010296.1|WP_041803579.1|53547_53955_+|gamma-glutamylcyclotransferase
MMEVFVYGTLKPKESNYSAYCAGKVINSKTVYTRGHLYHLTALGYPGLTEGEGWVKGILLTFNADYDLGLLDGLEDYQPGRDAEENEYQRRRIPIYNLERELIGEAWGYMMTPAKIAFHGGIWLPSGWWTSSDRE
>NC_010296.1|WP_008205609.1|52525_53551_+|aldo/keto-reductase
MRYKLLGNSGLRVSELCLGTMTFGQDWGWGSDKEESRAVFQAFAEAGGNFLDTANIYTNGTSETLVGEFVKGDREKWVIATKYSLNTRPGDVNACGNHRKNLFQAVEASLKRLGTDYIDLLWLHIWDSLTPIEEVMRAFDDLVRMGKVLYIGISDSPAWIVSQGNTLATLRGWTPFIGLQIEYSLKERTPERELLPMAKALNIGVTAWSPLGGGVLTGKYNQPNPVDGRLSMTDQPFQILDRDLKIAETALEIAREIGKSPAQVALNWLRNRPNSVIPIIGARKLSQLQDNLACVDFNLTGEQLQRLDNISAISLGFPHELLASQFVCDILLGGVAAQLDR
>NC_010296.1|WP_041803577.1|49280_50072_-|Uma2-family-endonuclease
MSSMTPTAQPSTTIQDPSATVYCDSPLPDHTQLPDKDGSFVKNYQEPPQADLLTDTITPILDKLHPDGNYCLGRDCGIYWRLPEYPESLEKGAVAPDWFYVPHVPTTIEGQVRRSFVMWKETIEPVIALEFVSGNGEEERDKTPVKGKFWIYERAIQIPFYGIYEVNKAQIEMYQLVNGRYQKMTPNQRGHYPIVPLKVELGIWQGEYQNQFFPWLRWWDGEGNLLLTSQESTERERQRAEQERQRADRLAEQLRALGIEPED
>NC_010296.1|WP_002797475.1|49053_49209_+|anacyclamide/piricyclamide-family-prenylated-cyclic-peptide
MKTPKLTPRITAPVQRDNISTVPSDGNVITPATFCDLATKQCYPFAGDDAV
>NC_010296.1|WP_012263827.1|47949_48909_+|cyanobactin-biosynthesis-PatC/TenC/TruC-family-protein
MTAIPVDLVIVIDTSVSVKAEAEGLSQAAETAIANARSHCPSDLRVIWLGIEGTWKNTQFERTVRDYLSKTCAIPESALKSRKKGELPSGGAQEDAARVMQDLATHFDWRTGAKRAIFYLGDEALDAGGDKTLAKDIEAANQAIQGAKTAQVIIHTYCGQSKSRYRHTIEAEYARVAQETGGQSFTAEGSLRDFATVLEQIICGSQSLPQIPLTEPQNNDTPTTALATDGDPQPVLQQTHGEHQTMSKSKDSTESAAAAANVTQPTPEKPKTDQPETTEPKTKYIPATGLEDYGRWKTMFKDRKANPNDPPFRRGRIWS
>NC_010296.1|WP_002753002.1|47568_47826_+|cyanobactin-biosynthesis-system-PatB/AcyB/McaB-family-protein
MPECFAPTPIIYPKTTVRLPKQSAPVKRPHFIHPHECVDIVHGDGEDLVSILVKLVHGANYNDPAQFQYPHYGYLKMSSFGGFRY
>NC_010296.1|WP_012263821.1|44113_44263_+|hypothetical-protein
MKETTPAAMPPCFDRWCRRFDNCFKNEAQKNGFRQYLGSAEKVFPRGRV
>NC_010296.1|WP_173351095.1|40980_42375_-|transposase
MELLDSLSSNRQASTVAELSLNPLFRRDYNSLYKGIQEFLPSPTNDNYQKAFDSLLSVVSATIPPPVSRQFYLFGVDVTPCPRPYSATLEDKKYIYQPNTIKGNKPINIGHAYSVIAALPERSETGNVPWAIPLSGQRVSSGEKDISVASNQVKKILNHSSVPWKDKLSVLVADSLYSQRGFLGEQVKQNNLVTLTRGRSNRVFYRQFIPEDYSPKQPGHPRWYGDKFDLKDETTWLEPDEIIQSTFTTKRGRELNLKISGWKQMLMRGTSDYEMHSHPFTLLQIIVSDETGKAVWKPMWLILIGSRRYELSLQECYEAYGQRYDLEHLFRFGQQKLLLNAYYTPEVNHEENWVQLTLLAAVNLWATRKLALVLPRPWEQYLKKSESVEITPSLVQRDFYRIISEIGTLVKSPKRRGYSAGRIKGYKKVPRTRHQVIKKQTKTHIPHPQLSHKLSPARDLSKNT
>NC_010296.1|WP_002797484.1|57484_57727_-|hypothetical-protein
MLTNDETKRLKQAILAAIASPLIGSIEDYSWEAIFHYIKNIPLSDPALGRSKLLYDAVDSKTASGWSLKSLQLNSLTRAG
>NC_010296.1|WP_148204717.1|57925_59148_+|ISAzo13-like-element-ISMae28-family-transposase
MELTDSLKKLLSETALQLKGAAKRRFMAQTVLELGYGGQTLAAQELGWNRTTIRKGIKELKRGIICVDNHSAKGRKKAEEHLPFLLENIKSLVDSQSQTDPSFKSQRLYVRLSAAEVRKQLISKYGYSDEDLPSEETIRVKLNNLGYRLKRVAKVLPQKKFPETEAIFEELANINREADEDPTMLRLSLDAKARVNIGLFDRGGKNRITVETNDHDFNPKTTLTPYGIFIPEFDELFLYFTASTVTSDFIVDILEDFWESEKSRFEKIKTLIINQDNGPENNWRRTQFMKRIVEFSQKYQVNIRLAYYPPYHSKYNPIERTWAVLENPWNGSILDEIETALKFAQTMTWKGKHPIVKLITETYEKGVKLTKKAMEKIEEKIERLTESTNQDFPDLGQWFIDIYYDKT
>NC_010296.1|WP_012263836.1|59332_59554_-|helix-turn-helix-transcriptional-regulator
MQSGQLEQILGRELQRYRQEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITNALGDFQRIKYPTKK
>NC_010296.1|WP_002761352.1|59706_61065_+|ribosome-biogenesis-GTPase-Der
MKLPVVAIIGRPNVGKSTLVNRIAGDQQAIVFDQPGITRDRTYQPAFWCDRDFQIVDTGGLVFNDDSEFLPLIREQALIALAEASVAIFVVDGQGGITAGDREIAAWLRQQNVPILLAVNKCESVEQGILQATEFWELAIGEPFPISAIHGSGTGELLDAVIKYLPPAAEIPENEEIKVAIIGRPNVGKSSLLNALTGQQRAIVSPISGTTRDSIDTLIEREGQVYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRSDVVLFVIDVLDGVTEQDLKLAGRIIEEGRAVVLVVNKWDAVEKDTYTINTYTKMLQDRLYFMDWAEMIFVSAMTGQRVTKILELVDIAAESHRRRVSTSVINDVIEEAVKWHNPPTTRGGKQGKLYYGTQVSSQPPTIALFVNDPQRFNDNYRRYIEGQFRQQLGFKGTPIRLIWRGKPAREVEKTVNRATKV
>NC_010296.1|WP_012263837.1|61068_61944_+|CbiQ-family-ECF-transporter-T-component
MDLLRSLPIGLYLDQPITRLHQLDARVKFIWLMAFLAAPLLANPWWRLALVGLLMFLTLLAPIPPRVWRQQMGWLIFLAIIVFLITAITPDGLAVSIQPRLPDEGLNLPPASDYQYVLWDRGRLFVTRRSLELAVRISTLVFTLIYSTNLFLLTTAPEEITEGLENLMSPLRRFNVPVTEISLTLTLSLRFIPLVLEEVQNLARAVRTRAIDWQKLGIKKSLNVWLTVVEKFLDNLLLRAEQIAIAMEVRGFTSPNQHQVRWHQLQLRWADLIALFLLIPFWAARLVWGGL
>NC_010296.1|WP_148204779.1|64127_65234_+|calcium-binding-protein
MSVSGGTLSDFTQVDGNSYQATFTADDAVETTGSVSVAADSYSDVAGNNGGAGTDTVTIDTLNPTVGITFDNSPLTGQNFSTTITFQFSEAVSGFAASDVTLTNGVLSNFTGSGSSYTATFIATNFQSPTGTVAVSNDYFDTPGNQGAANSANIAMTVGGGPDPNDGPSGGGSVIGSGTIGADSITGSTGDDNLSGLDGNDTINGGDGNDTINGGTGADIISGGTGNDNIIGLGGFDLIYGGSGNDTINGSNGIDTIVGGFGNDSLTGGGGDTFRFLSIYDQQDVITGFNDTIVFDITGASAFTSLGSGALGTTTYTGAIAGGYLTYSGGVLSYDADGSAGSTFSPLAIVTLTGSPTLSNTNVLFQNL
>NC_010296.1|WP_012263842.1|67538_68150_+|DUF3318-domain-containing-protein
MNQDNEISHLLDLMPASGRMMTRIVSKPESTKVIETNFPLPWQRGVRPIQINFDLWRQLSRPQRDLVLLRAVSVLTAVKWFKPDLDRLIALAGMIGLTVETLQTDAVGMAVAGGLTALAINRIWREKRSPQRELDADEAALKVAVRRGYTETEAAKGLLSAIETIAEIEGRSSLNFNELLRCQNLKKLANLSFVGVPDQVRQS
>NC_010296.1|WP_012263843.1|68265_70377_+|DNA-helicase-RecQ
MAAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYIKGQKGAGIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKARQQLRQVLDYAEGTECRRSRVLGYFGESFAGNCGNCDNCRNGTNNQDWTIEAQKFLSCVARTGQKFGMMHIINVLRGGKGERITQYQHHLLSTYGIGKDKTVEEWKRLSRSLVQQNILVETEDDFRILKLNQHSWEVMRKQRSVFIAVPQKANGQIVGDDNPNMVESDLLFERLRQLRKKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFCQDSLPSTQFLTLQYYQDGLNAEEIARKRSLKVSTIYEHLAKLLEAGYEIDINQLVSKNKQEYIRLVIKKLGDQSLKTLKENLGDNYSYEEIKLVVAWQRRPRQ
>NC_010296.1|WP_002760440.1|70533_70674_-|hypothetical-protein
MNSAKIIAIITGAISILIAVAYLILVQILDFRSEMIPAPLEVIFPG
>NC_010296.1|WP_012263845.1|71387_72836_+|F0F1-ATP-synthase-subunit-beta
MVATTETNVGKIVQIIGPVIDAEFPSGKLPRIYNALTVKGTNSAGQNLSVTCEVQQLLGDNQVRAVAMSTTDGLVRGMDIVDTGAAISVPVGKCTLGRIFNVLGEPVDEKGPVNVTETSPIHRPAPKLVDLEVTPTVFETGIKVIDLLTPYRQGGKIGLFGGAGVGKTVIMMELINNIAIQHGGVSVFGGVGERTREGNDLYNEMIESKVINADNPEDSKIALVYGQMNEPPGARMRVGLSALTMAEYFRDVSKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLGSTSTMLQADIVGDEHYGTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIERFLSQPFFVAEVFTGSPGKYVTLADTIKGFQMILKGELDSLPEQAFYMVGSIDEAIAKGEKLKKG

Crispr_ID: NC_010296_2

• CRISPR_ID: NC_010296_2
• CRISPR_location: 80946-81749
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 10 spacers

Consensus repeat of NC_010296_2

Consensus_repeat	Method
AGNAGCCGTATTACCNGNTATTGTACTGTTGGTTAA	CRT

spacers of NC_010296_2

>2.1|80982|42|NC_010296|CRT
TGTTAATGTTCCCGTAGAGTTGAAAATTCCCCCTCCAGAACG
>2.2|81060|42|NC_010296|CRT
TGTTAATGTTCCCCCATCGTTGTCAATTCCCCCTCCGTCATA
>2.3|81138|39|NC_010296|CRT
TGTTAATGTTCCATAGTTTTCAATTCCCCCTCCAGAACC
>2.4|81213|42|NC_010296|CRT
TGTTAATGTTCCCCCATAGTTGTCAATTCCCCCTCCGTCATA
>2.5|81291|39|NC_010296|CRT
TGTTAATGTTCCATAGTTTTCAATTCCCCCTCCAGAACC
>2.6|81366|51|NC_010296|CRT
TGTTAATGTTCCCGTAGAGTTGTAAATTCCCCCTCCAGAACCATAATAACC
>2.7|81453|45|NC_010296|CRT
TGTTAATGTTCCCCTTCCCCAGTTGTAAATTCCCCCTCCAGAATA
>2.8|81534|39|NC_010296|CRT
CGTTAATGTTCCATCGTTCTCAATTCCCCCTCCAAAATT
>2.9|81609|33|NC_010296|CRT
CGTTAATATTCCCCTTCCCCAGTTGTGAATTCC
>2.10|81678|36|NC_010296|CRT
TGTTAATGTTCCATCGTTGTCAATTCCCCCTCCATA

CRISPR arrays and Neighbor proteins around NC_010296_2

CRISPR arrays

The CRISPR arrays of NC_010296_2

>merge|NC_010296|2|80946-81749|CRT
ATCAGCAGTATTACCTGTTATTGTACTGTTGGTTATTGTTAATGTTCCCGTAGAGTTGAAAATTCCCCCTCCAGAACGAGTAGCCGTATTACCAAATATTGTACTGTTGGTTAATGTTAATGTTCCCCCATCGTTGTCAATTCCCCCTCCGTCATAAGCAGCCGTATTACCAGATACTGTACTTTCAGTTAATGTTAATGTTCCATAGTTTTCAATTCCCCCTCCAGAACCAGTAGCCGTATTACCAGATATTGTACTGTTGGTTAATGTTAATGTTCCCCCATAGTTGTCAATTCCCCCTCCGTCATAAGCAGCCGTATTACCAGATACTGTACTGTCAGTTAATGTTAATGTTCCATAGTTTTCAATTCCCCCTCCAGAACCAGTAGCCGTATTACCAGATATTGCACTGTCGGTTATTGTTAATGTTCCCGTAGAGTTGTAAATTCCCCCTCCAGAACCATAATAACCAGTAGCCGTATTACCAGATATTGTACTGTTGGTTAATGTTAATGTTCCCCTTCCCCAGTTGTAAATTCCCCCTCCAGAATAAGTAGCCGTATTACCTGTTATTGTACTGTTGGTTAACGTTAATGTTCCATCGTTCTCAATTCCCCCTCCAAAATTAGTAGCCGTATTACCTGTTATTGTACTGTTGGTTAACGTTAATATTCCCCTTCCCCAGTTGTGAATTCCCCCTCCAGTATTACCAGATATTGTACTGTTGGTTAATGTTAATGTTCCATCGTTGTCAATTCCCCCTCCATAAGTAGCCGTATTACCTGTTATTGTACTGTTGTTTAA

>NC_010296|2|1|80946-81749|CRT
ATCAGCAGTATTACCTGTTATTGTACTGTTGGTTAT	TGTTAATGTTCCCGTAGAGTTGAAAATTCCCCCTCCAGAACG
AGTAGCCGTATTACCAAATATTGTACTGTTGGTTAA	TGTTAATGTTCCCCCATCGTTGTCAATTCCCCCTCCGTCATA
AGCAGCCGTATTACCAGATACTGTACTTTCAGTTAA	TGTTAATGTTCCATAGTTTTCAATTCCCCCTCCAGAACC
AGTAGCCGTATTACCAGATATTGTACTGTTGGTTAA	TGTTAATGTTCCCCCATAGTTGTCAATTCCCCCTCCGTCATA
AGCAGCCGTATTACCAGATACTGTACTGTCAGTTAA	TGTTAATGTTCCATAGTTTTCAATTCCCCCTCCAGAACC
AGTAGCCGTATTACCAGATATTGCACTGTCGGTTAT	TGTTAATGTTCCCGTAGAGTTGTAAATTCCCCCTCCAGAACCATAATAACC
AGTAGCCGTATTACCAGATATTGTACTGTTGGTTAA	TGTTAATGTTCCCCTTCCCCAGTTGTAAATTCCCCCTCCAGAATA
AGTAGCCGTATTACCTGTTATTGTACTGTTGGTTAA	CGTTAATGTTCCATCGTTCTCAATTCCCCCTCCAAAATT
AGTAGCCGTATTACCTGTTATTGTACTGTTGGTTAA	CGTTAATATTCCCCTTCCCCAGTTGTGAATTCC
CCCTCCAGTATTACCAGATATTGTACTGTTGGTTAA	TGTTAATGTTCCATCGTTGTCAATTCCCCCTCCATA
AGTAGCCGTATTACCTGTTATTGTACTGTTGTTTAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002762924.1|88743_89253_+|bidirectional-hydrogenase-complex-protein-HoxE	unknown	unknown	gnl|CDD|236053
NC_010296.1|WP_012263849.1|83218_84229_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002760451.1|74678_74942_+|DUF3134-domain-containing-protein	unknown	unknown	gnl|CDD|371474
NC_010296.1|WP_012263845.1|71387_72836_+|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl|CDD|214349
NC_010296.1|WP_002797498.1|85781_86072_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_041803592.1|82781_83168_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012263850.1|84225_84573_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_155120265.1|87101_87254_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012263852.1|86226_86724_-|DUF3368-domain-containing-protein	unknown	unknown	gnl|CDD|225269
NC_010296.1|WP_002760440.1|70533_70674_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002754869.1|76940_77231_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl|CDD|376852
NC_010296.1|WP_002794892.1|76055_76379_-|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl|CDD|223393
NC_010296.1|WP_012263854.1|87225_88146_-|DUF4351-domain-containing-protein	unknown	unknown	gnl|CDD|316753
NC_010296.1|WP_012263851.1|84708_85728_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	unknown
NC_010296.1|WP_002760450.1|73472_73796_-|30S-ribosomal-protein-PSRP-3	unknown	unknown	gnl|CDD|235062
NC_010296.1|WP_002735380.1|72911_73328_+|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl|CDD|214351
NC_010296.1|WP_012263846.1|73899_74304_+|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl|CDD|239517
NC_010296.1|WP_002797493.1|74987_76055_+|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl|CDD|234638
NC_010296.1|WP_012263843.1|68265_70377_+|DNA-helicase-RecQ	unknown	unknown	gnl|CDD|223588
NC_010296.1|WP_002797501.1|86720_86966_-|UPF0175-family-protein	unknown	unknown	gnl|CDD|377095

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002762924.1|88743_89253_+|bidirectional-hydrogenase-complex-protein-HoxE	gnl|CDD|236053	PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed.	5.48618e-109
NC_010296.1|WP_012263852.1|86226_86724_-|DUF3368-domain-containing-protein	gnl|CDD|225269	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	1.7392e-44
NC_010296.1|WP_002760451.1|74678_74942_+|DUF3134-domain-containing-protein	gnl|CDD|371474	pfam11332, DUF3134, Protein of unknown function (DUF3134). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	5.77598e-24
NC_010296.1|WP_012263843.1|68265_70377_+|DNA-helicase-RecQ	gnl|CDD|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	0
NC_010296.1|WP_012263845.1|71387_72836_+|F0F1-ATP-synthase-subunit-beta	gnl|CDD|214349	CHL00060, atpB, ATP synthase CF1 beta subunit.	0
NC_010296.1|WP_002797493.1|74987_76055_+|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl|CDD|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	3.13994e-127
NC_010296.1|WP_002754869.1|76940_77231_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl|CDD|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.20433e-08
NC_010296.1|WP_002794892.1|76055_76379_-|iron-sulfur-cluster-assembly-accessory-protein	gnl|CDD|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	6.8766e-37
NC_010296.1|WP_012263854.1|87225_88146_-|DUF4351-domain-containing-protein	gnl|CDD|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	2.8428e-21
NC_010296.1|WP_002760450.1|73472_73796_-|30S-ribosomal-protein-PSRP-3	gnl|CDD|235062	PRK02724, PRK02724, 30S ribosomal protein PSRP-3.	3.91121e-66
NC_010296.1|WP_002735380.1|72911_73328_+|F0F1-ATP-synthase-subunit-epsilon	gnl|CDD|214351	CHL00063, atpE, ATP synthase CF1 epsilon subunit.	5.22714e-60
NC_010296.1|WP_012263846.1|73899_74304_+|8-oxo-dGTP-diphosphatase-MutT	gnl|CDD|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	6.04683e-55
NC_010296.1|WP_002797498.1|85781_86072_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	1.48447e-17
NC_010296.1|WP_012263850.1|84225_84573_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	1.9378e-15
NC_010296.1|WP_002797501.1|86720_86966_-|UPF0175-family-protein	gnl|CDD|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	1.18772e-19

Protein sequences

>NC_010296.1|WP_002754869.1|76940_77231_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MLNLSKDIHSLTEFKRNTTRFLEHLKQTKDPLVLTVDGKAALVVQDAESYQTLLEAAELVETLKGVKRGLEEMKQGKGKKAEEFFSELFDKLDSSP
>NC_010296.1|WP_002794892.1|76055_76379_-|iron-sulfur-cluster-assembly-accessory-protein
MIELSPAAAREIERWSQSRRLTGSYLRLAVKNGGCSGLHYHLELTPIAAENDRFYQSQGINIVVDPDSDRYLQILKLDYSEDLMGGGFRFTNANTQNTCGCGLSFSA
>NC_010296.1|WP_002797493.1|74987_76055_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MNANIFSAPIFKKPTGTHLLILLTGLLFLLVVFFQSTNSLLIPLMATTLISAGLGCQVVPMLRRLKMGQIMREDGPQAHLKKAGTPTMGGSFFVPVALIFALIWSKFTPNVVAVALLTFVYMGIGWLDDWQILRYKSNKGLSPQMKLILQITGAVLFCLWMLVNQVSTDITLWGRLVIPLGFFFWILAGFVLVAESNATNLTDGVDGLAGGTGAIAFLGLGIIIAPSHPDLAIFCTCFAGACLGFIFHNRNPAKVFMGDTGSLALGGALAAVGLIAGHLWGLFLISGLFFLESLSVIAQVIYYKATKGPDGKGKRLLKMAPFHHHLELSGWTETKIVGAFYLVNALLVVLAIWSS
>NC_010296.1|WP_002760451.1|74678_74942_+|DUF3134-domain-containing-protein
MIAANRRVIMLNPSIRQEPRYEPAAVIPLKKDASIVEWLEKNNRMIPRDKIAEPDLTLEEDVELSELMDVDDIGYDDDEDELVLDED
>NC_010296.1|WP_012263846.1|73899_74304_+|8-oxo-dGTP-diphosphatase-MutT
MIPETDSLPCKQIGVAVIRDDRDLILIDRRLAKGLLGGFWEFPGGKIEGNETVQECIKREVLEEIGIEIAVDSHLITIDHTYSHFRVNLQVYNCRYLSGEARAIECEEIRWVTIQELDNYTFPAANQEIIENLG
>NC_010296.1|WP_002760450.1|73472_73796_-|30S-ribosomal-protein-PSRP-3
MTVSSESKFILKVLWLDQNVAIAVDQVVGKGTSPLTAYFFWPRNDAWQQLQEELEAKHWIDESDRVDVLNKATEVINFWQELRNQGRQIPMADAQLKFPEVVFSGSN
>NC_010296.1|WP_002735380.1|72911_73328_+|F0F1-ATP-synthase-subunit-epsilon
MSITVRVITPDRIVWDNVAEEVILPSSTGQLGILSGHAPLLTALNIGVMRIRPGKDWENIAVLGGFAEVENNEIKVLVNGAELGSKIDKEKARAEYERAQTRLDEVSKGDDRRKTIQAQQSWRKARARYQAAGGLVSV
>NC_010296.1|WP_012263845.1|71387_72836_+|F0F1-ATP-synthase-subunit-beta
MVATTETNVGKIVQIIGPVIDAEFPSGKLPRIYNALTVKGTNSAGQNLSVTCEVQQLLGDNQVRAVAMSTTDGLVRGMDIVDTGAAISVPVGKCTLGRIFNVLGEPVDEKGPVNVTETSPIHRPAPKLVDLEVTPTVFETGIKVIDLLTPYRQGGKIGLFGGAGVGKTVIMMELINNIAIQHGGVSVFGGVGERTREGNDLYNEMIESKVINADNPEDSKIALVYGQMNEPPGARMRVGLSALTMAEYFRDVSKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGDLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDGTTVLSRGLASKGIYPAVDPLGSTSTMLQADIVGDEHYGTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVDRARKIERFLSQPFFVAEVFTGSPGKYVTLADTIKGFQMILKGELDSLPEQAFYMVGSIDEAIAKGEKLKKG
>NC_010296.1|WP_002760440.1|70533_70674_-|hypothetical-protein
MNSAKIIAIITGAISILIAVAYLILVQILDFRSEMIPAPLEVIFPG
>NC_010296.1|WP_012263843.1|68265_70377_+|DNA-helicase-RecQ
MAAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYIKGQKGAGIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQKARQQLRQVLDYAEGTECRRSRVLGYFGESFAGNCGNCDNCRNGTNNQDWTIEAQKFLSCVARTGQKFGMMHIINVLRGGKGERITQYQHHLLSTYGIGKDKTVEEWKRLSRSLVQQNILVETEDDFRILKLNQHSWEVMRKQRSVFIAVPQKANGQIVGDDNPNMVESDLLFERLRQLRKKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFCQDSLPSTQFLTLQYYQDGLNAEEIARKRSLKVSTIYEHLAKLLEAGYEIDINQLVSKNKQEYIRLVIKKLGDQSLKTLKENLGDNYSYEEIKLVVAWQRRPRQ
>NC_010296.1|WP_041803592.1|82781_83168_-|hypothetical-protein
MMTLSPELQSSLESKIKQFEEERTMPLMSNMELRGIERGKEIGKEIGKEIGELRGIERGKEIGKEIGALQKSRDAIKTVLTVRFGQISSEIEEIIGKMTNPTILEELLKLAATANSLAEFRQSLARIQ
>NC_010296.1|WP_012263849.1|83218_84229_-|hypothetical-protein
MNPTTANYDEPWKEALTEYFEAFLCFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKAWLLEGQEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEESWSELEASSNPFAIIVMAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEEKTMPLMSNMELRGRKIGEEIGELRGIERGKEIGKEIGALENARDFVKKVLENRLGDIPGDIGQCLNDASVISVLEEMLKAALIVNSFEECRKSFSIIINK
>NC_010296.1|WP_012263850.1|84225_84573_-|DUF4347-domain-containing-protein
MTSTLLPSFPAVDDVLFNFAQSDGLSQANRVDSARNQRLTATVVFLDAGVSDYQSLQAGVIPGVATVILSPNQDGIEQISAFLPQNPQITTTNSIIKSVRYAIALHSLRVSKQLK
>NC_010296.1|WP_012263851.1|84708_85728_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MNPTTANYDEPWKEALSEYFEAFLCFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEERWTELETSSNPFAIIVMAHLKTKATTGKLPQREQWKWRLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLMSNMELRGIERGKEIGKEIGELRGIERGKEIGKEIGALENARDFVKTVLQARLGEVPLDVEQYLNKVSVLSTLQEIVKLAATANSLAEFKQSLAKINI
>NC_010296.1|WP_002797498.1|85781_86072_-|DUF4347-domain-containing-protein
MSSPLLPILPAVDDILFDFAESDGLSQANRVDSARNQRLTATVVFLDAGVSDYQSLQAGVIPEVATVILSPNQDGIEQISAFLPQNPQITTIHLYY
>NC_010296.1|WP_012263852.1|86226_86724_-|DUF3368-domain-containing-protein
MIIISDTSPLSSLALVGYLSILKDIYTNVIIPQAVANELANLTEEDIRIKATLSLEWIQVQQATNLELVACLRNEYNLDLGEAEAIALAWELKADELLIYERLGRREAVRLGLSITGILGVLLIAKNRGLVSKVKPIMESLISQANFRISHQLYEEVLQTANELD
>NC_010296.1|WP_002797501.1|86720_86966_-|UPF0175-family-protein
MSLVISQEVIKASGLSEDELLKEIVIMLFQQDKISLGKASELLGINQIKFQRLLSERGICIHYDVAEFQEDIKHLKNKGWL
>NC_010296.1|WP_155120265.1|87101_87254_+|hypothetical-protein
MTILAGHCQGDTSRVNFSLSAKTTRSNLTACDGEDAIANVKTRQLKYLTN
>NC_010296.1|WP_012263854.1|87225_88146_-|DUF4351-domain-containing-protein
MTNNIDHDRLFKELISIFFVEFIELFFPQLINYLDRDSITFLDKEVFTDVTEGERYESDLVAQVKFRGKESFFLIHVEAQESSRKWFNRRMFTYFARFHEKFVLPIYPIVIFSYSRPKRAAISQYVVDFPDFKVLEFNYQVVQLNRLNWRDFLNQPNPVASALMAKMNIAEKERAKVKAECLRLLITLRLDAARMQLISGFIDTYLNLNPVEEIQFQQEISTFSQPVQEGVMQITTSWMRQGIEQGIEREKTLILRQLKRKLGEINPSLETKIMQLSIDDVEVLGEALFDFSTVEDLINWLNTLTA
>NC_010296.1|WP_002762924.1|88743_89253_+|bidirectional-hydrogenase-complex-protein-HoxE
MQTANPRQTEKKEHPSGDKRFKVLDITMKRAGYNQSALIEVLHKAQEAFGFLEEDVLLYVARALKLPLSRVYGVATFYHLFSLKPAGKHTCIICMGTACYVKGSGKILEDIENAFDVKVGETTADGEISLVSARCIGACGIAPAVVFDGVVAPKQDSETVLAKLQSFSQ

Crispr_ID: NC_010296_3

• CRISPR_ID: NC_010296_3
• CRISPR_location: 335211-335347
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_3

Consensus_repeat	Method
ACCCAAGGAAACCCAACAAAAAGATTCAGACGGATTTAGGT	CRISPRCasFinder

spacers of NC_010296_3

>3.1|335252|55|NC_010296|CRISPRCasFinder
GTTGGTTGTTGGGTTTCTACCGTAGGTTGGGTTGAGGCACGAAACCCAACAATAC

CRISPR arrays and Neighbor proteins around NC_010296_3

CRISPR arrays

The CRISPR arrays of NC_010296_3

>merge|NC_010296|3|335211-335347|CRISPRCasFinder
ACCCAAGGAAACCCAACAAAAAGATTCAGACGGATTTAGGTGTTGGTTGTTGGGTTTCTACCGTAGGTTGGGTTGAGGCACGAAACCCAACAATACACCCAAGGAAACCCAACAAAAAGATTCAGACAGATTTAGGT

>NC_010296|3|2|335211-335347|CRISPRCasFinder
ACCCAAGGAAACCCAACAAAAAGATTCAGACGGATTTAGGT	GTTGGTTGTTGGGTTTCTACCGTAGGTTGGGTTGAGGCACGAAACCCAACAATAC
ACCCAAGGAAACCCAACAAAAAGATTCAGACAGATTTAGGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012264054.1|342116_343244_-|DUF1822-family-protein	unknown	unknown	gnl|CDD|370155
NC_010296.1|WP_012264055.1|343246_344494_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041803658.1|330212_330449_+|DUF4160-domain-containing-protein	unknown	unknown	gnl|CDD|379344
NC_010296.1|WP_002763050.1|334511_334808_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|374224
NC_010296.1|WP_012264060.1|349476_350334_-|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270406
NC_010296.1|WP_012264061.1|350352_351390_-|AI-2E-family-transporter	unknown	unknown	gnl|CDD|279875
NC_010296.1|WP_012264046.1|331149_332241_-|ISAs1-like-element-ISMae8-family-transposase	unknown	unknown	gnl|CDD|379382
NC_010296.1|WP_012264052.1|335427_339567_-|serine-protease	unknown	unknown	gnl|CDD|274350
NC_010296.1|WP_012264059.1|348057_349464_-|DUF2079-domain-containing-protein	unknown	unknown	gnl|CDD|370724
NC_010296.1|WP_012264049.1|333679_334027_-|hypothetical-protein	unknown	unknown	gnl|CDD|376074
NC_010296.1|WP_155120266.1|329771_329945_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264053.1|339632_342101_-|CHASE2-domain-containing-protein	unknown	unknown	gnl|CDD|226703
NC_010296.1|WP_012264063.1|352029_352827_+|pentapeptide-repeat-containing-protein	unknown	unknown	gnl|CDD|224276
NC_010296.1|WP_012264056.1|344767_346621_+|ATP-dependent-zinc-metalloprotease-FtsH3	unknown	unknown	gnl|CDD|273520
NC_010296.1|WP_002768607.1|334819_335008_-|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl|CDD|377942
NC_010296.1|WP_002798281.1|333326_333671_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002785172.1|330432_330681_+|DUF2442-domain-containing-protein	unknown	unknown	gnl|CDD|378424
NC_010296.1|WP_002763046.1|332754_333048_-|nucleotidyltransferase-family-protein	unknown	unknown	gnl|CDD|224583
NC_010296.1|WP_012264058.1|347168_348116_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl|CDD|234626
NC_010296.1|WP_012264047.1|332416_332758_-|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|225236

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012264061.1|350352_351390_-|AI-2E-family-transporter	gnl|CDD|279875	pfam01594, AI-2E_transport, AI-2E family transporter. This family includes four different proteins from E. coli alone. One of them, YdgG or TqsA, has been shown to mediate transport of the quorum-sensing signal autoinducer 2 (AI-2). It is not clear if TqsA enhances secretion of AI-2 or inhibits AI-2 uptake. By altering the intracellular concentration of AI-2, TqsA affects gene expression in biofilms and biofilm formation. TsqA belongs to the AI-2 exporter (AI-2E) superfamily.	7.85396e-54
NC_010296.1|WP_041803658.1|330212_330449_+|DUF4160-domain-containing-protein	gnl|CDD|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	1.31597e-12
NC_010296.1|WP_002763046.1|332754_333048_-|nucleotidyltransferase-family-protein	gnl|CDD|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	2.19602e-22
NC_010296.1|WP_012264060.1|349476_350334_-|amino-acid-ABC-transporter-substrate-binding-protein	gnl|CDD|270406	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.51445e-88
NC_010296.1|WP_012264046.1|331149_332241_-|ISAs1-like-element-ISMae8-family-transposase	gnl|CDD|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	5.49231e-26
NC_010296.1|WP_012264056.1|344767_346621_+|ATP-dependent-zinc-metalloprotease-FtsH3	gnl|CDD|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_010296.1|WP_012264059.1|348057_349464_-|DUF2079-domain-containing-protein	gnl|CDD|370724	pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.41853e-105
NC_010296.1|WP_012264049.1|333679_334027_-|hypothetical-protein	gnl|CDD|376074	pfam18648, ADPRTs_Tse2, Tse2 ADP-ribosyltransferase toxins. Tse2 from P. aeruginosa has structural features similar to ADP-ribosylating toxins. It is a cytoactive toxin secreted by a type six secretion apparatus of Pseudomonas aeruginosa and found mostly in gamma proteobacteria. It naturally attacks a target in the cytoplasm of bacterial cells. Structural analysis shows similarity between Tse2 and nicotinamide adenine dinucleotide (NAD)-dependent enzymes from bacteria, notably the mono-ADP-ribosyltransferase toxins (ADPRTs). Furthermore, it revealed that the Tse2 active site is occluded upon binding the cognate immunity protein Tsi2. The abrogation of toxicity for the R14A, S80A, and H122A mutant Tse2 proteins indicates the importance of these amino acids in the mechanism of Tse2 toxicity and, given their conservation with NAD-reactive enzymes, also supports their assignment as being involved in a catalytic reaction.	5.34127e-05
NC_010296.1|WP_012264054.1|342116_343244_-|DUF1822-family-protein	gnl|CDD|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	2.6923e-57
NC_010296.1|WP_012264053.1|339632_342101_-|CHASE2-domain-containing-protein	gnl|CDD|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	4.21998e-75
NC_010296.1|WP_012264063.1|352029_352827_+|pentapeptide-repeat-containing-protein	gnl|CDD|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.84064e-28
NC_010296.1|WP_002768607.1|334819_335008_-|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl|CDD|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	3.94728e-16
NC_010296.1|WP_012264052.1|335427_339567_-|serine-protease	gnl|CDD|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.53861e-53
NC_010296.1|WP_002785172.1|330432_330681_+|DUF2442-domain-containing-protein	gnl|CDD|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	1.92782e-14
NC_010296.1|WP_002763050.1|334511_334808_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	9.77664e-28
NC_010296.1|WP_012264058.1|347168_348116_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl|CDD|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	3.35346e-139
NC_010296.1|WP_012264047.1|332416_332758_-|DUF86-domain-containing-protein	gnl|CDD|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	4.62534e-28

Protein sequences

>NC_010296.1|WP_002768607.1|334819_335008_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MESREIIKKLKDEGWYQVGTTGSHHHFKHPHKKGKVTVPHPKKDIPLKTLISIEKQAGIKLR
>NC_010296.1|WP_002763050.1|334511_334808_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MITYLATVHKDNHSDYGVQFYDFPGCISAGETIEEAKKMATEALKGHISFMLADGDEIPTPSTLETILTDADHQDAIAFLLIEVSEAILNHQELCVKN
>NC_010296.1|WP_012264049.1|333679_334027_-|hypothetical-protein
MIKTPVDLYRRGNATSPRMDYVRPNKDIAIYENNGQIWVKETLVDGQTPGGISTFSVQGIGNNWWKLDRGISIPSELELINDRGNHWLWKPLFPMSIETYQHALRVIGEFFYRVS
>NC_010296.1|WP_002798281.1|333326_333671_-|hypothetical-protein
MKTLSFKDIQFIIEALESLLKNYSDRIQQIEALENYEDEISDLSNDSLFLQELITDLQNQQTQELALLVPEFDLKKMPLQTLIKQGKNLSIEEKLILLESLTSSIREEYNLMRT
>NC_010296.1|WP_002763046.1|332754_333048_-|nucleotidyltransferase-family-protein
MTLKQLIQDKREDILKIATKHGAFNVRVFGSVARGEETENSDIDFLIDYDLAKTSPWFPGGLLVDLEALLGCKVDVVTEKSLHHLIKQRILKEAIKL
>NC_010296.1|WP_012264047.1|332416_332758_-|DUF86-domain-containing-protein
MNEDRVYLEYILDCIDKIKDYSQGGKQEFFANSMISDAIIRRLQTLAESTQRLSEELKANIPNVDWRNISGFRNILVHDYLGGIDLNTVWEVVENYLDDLRKQILRHLESVNT
>NC_010296.1|WP_012264046.1|331149_332241_-|ISAs1-like-element-ISMae8-family-transposase
MLSLIEKLKQVKDFRKDKGKRHPLWIVLVVIILGTMLGYSGYRELGEFAKNNRHRLSKEFNIIPERVPSYSTIRRVMMGVDWQSLLKMFNEWALEEYGQRDDINWLGMDGKSLKNTLKNPNNEQQNFIMFVSLFSQESGLVLHLKRMENKKGSEIDEGQAIIEDCSLQNKVFTGDALHCQKKTISLIAKTKNDYVITVKGNQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVRKNERQGFENLRRVIKVERKGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQLHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST
>NC_010296.1|WP_002785172.1|330432_330681_+|DUF2442-domain-containing-protein
MYLVHESIVKAQKVWVEDKWICIRLEDDREIRFPAYKNKRLSKATFEQLAEVELICDGTGLHWETLDEDLSIIGILEGRLGA
>NC_010296.1|WP_041803658.1|330212_330449_+|DUF4160-domain-containing-protein
MPEIFRLEGYVFFFYANEGNEPMHVHVRRGGGYAKFWLEPLELDYAKGLKTKEIVRAEVIITENIEIIRRKWHDVFGT
>NC_010296.1|WP_155120266.1|329771_329945_+|hypothetical-protein
MRFKIDRVSRPRLIAVGIAGLFRVLARSLAGGTVRRLVGNPRSLFPCLADRRKETQQ
>NC_010296.1|WP_012264052.1|335427_339567_-|serine-protease
MIKPSIALILLFSLLPQPGLTLITPAAGNISNHPILTAQGDRELTEEQILQRVTVRITSETNRGSGTIIAKKGDNYLVLTNAHVTRNTKTLQVQTYDGHSRAARIVPNSLSENQDLALLEFSDTRDYSIATIAKFTINQNRIGLEVVAAGYVAETGQYRTTKGTLEQVSDRPLRDGYSVGYSGDIVQGMSGGGIFVDGELIGINGRSAHPILSNYTYEDGTKPTDEEIQQMRAVNWGISLHTLLTYIRPEILSAYNLPLPQVNPDIETTAPTVYIAQLETKAKGFTVRIDSSSKANGSGVIANGSGVIIAKKGNIYTVLTAAHVLCEKIAEEKTCVNFTYTVVTRDGKTRKIEKSTIIRQEGVDLAVFQFESRDNYPVAEIANYNPNTGDFVFAAGFPKIGDNPSKWLFSGGTIHDKEGGLLQTRQSDLSNEQGGTLQSVASLTGGYELVYTSITFGGMSGGAVLDSQGRVIGIHGSSETAGVGKIQLGFSLGIPISTFIGLQERLKVKPQLLTTAQPQVSPQQQQEIIQAITGVIVPNTNAKADIWIQRGGQLWRLERYEEAIKAFDEAIKQNDPKNVYLAWYGKGLALGYLGKYQTAIEALQQAINTLPKREDLKNFHSSILQKQSVVYRYLENYEQALTVINQAISLFPNNPNHYNEKYVVLSQLKRYDEGLAAITQAIDLAPRAAWYGNRGNLYYNLQKYDLALSDWNKAIKINPNYANAYNNRGNLYSDQKKYELALADYSKAIDINPNDAVAYYNRGNLYYNLQKYDLALSDYSKAIDINPNDAKAYYNRGNLYSDLQKYDLALSDYSKAIDINPNYAETYNNRGNLYKDLQKYDLALSDYTKAIDILALSDYTKAIDINPNYAVAYNNRGLLYFNQKKYDLALSDYSKAIDINPNYAETYNNRGNLYKDLQKYDLALSDYSKAIDINPNYAVAYNNRGLLYLLQQKYELALADWNKAIELNRNLALAYLGRGGIYSLQQKYELALADYSKALEINPNLAEAYLGRGSIYSLQQKYELALADYSKALEINPNLAEAYLGRGGIYLLQQKYELALADFNKALEINPNYAMAYFGRGELYYYQKKYELALADYNKAIDINPNYANAYNNRGSIYYNQQKYELALADWNKAIELDSKLAMAYSNRGNIYNDQQKYELALADFNKAIELDSKLAMAYSNRGNLYYLQQKYELALADYNKALDINPNLAEAYLGRGGIYYYQQKDELALADFNKAIEINPNLVEAYNNRGNLYYLQQKYELALSDYNKAIKINKNAWFAMMGIGLVKYEQGSISEAIKQWEKALIINNQSAEIQLALAVAFYHQGEKDKALKLAESALSINSQLANIDFLKKILRTNKIFADVQKLLAHPELKNYVNQ
>NC_010296.1|WP_012264053.1|339632_342101_-|CHASE2-domain-containing-protein
MIKLLTLELDGTFDRGFKVKLEIRPDLNSRPQTVIKARLPANLELLTLYRQWQRHYSELEGFFKVLKDSNPQQITNSSQQSLVFKNCQEKAKLFEDNLNKWLNNSPEFEPIKTAILRSGNNFRIWLQTDNIWLQRFPWEKWEILQNTGADIAIIVSEYDTLTRQLKNHEKIRILAILGYATDLRFLEEDRKTLDDIAGKAGAEIIWEKAPHPQKLNQLLRQETWNILFFSGHSASTEDGQDCEIQLTETHKLKIADFSFSLGEATKNGLKLAIFNSCDGIGLAQQLSREKGMALPHLIFMREKLPDPVSPKFLQYFLTAFTNNKSLYSAVHEAQKNLHDDWEKDYPCASWLPVVCPNPTEEPPTWHSFSNSPQKQQNWRRFALTFGLGLAVTMTVLAIRETGILEPLELNIYDRLMQLKPKDKPDERLLIITIDRQDWEYQDRMGMKRPTIPGSDRKRSLAGEALSQLLNKLLPYEPQIIALDILRPIAASQDYPPLAKQLQNTPNFISICKFNNYPQPDGFPPPPELPKNQSGFSNIVPDETIAGVPRIRRFLYQAKLDRTSPCLPPDSLATVDSMSCNFKDYAPSFSLLIAKRYLESQNQDFDCNKLQRGILEINIGDTHLGDWLQSNRGPYRTSQSDTRSGRQVMLAYRRIADNGSDAITKIAPKKSLQQVLDPGFNSESVRGKIVLIGVTEPGIDDFLTPFSRNPSEAIPGVYLHAHAVSQILDTMEGKRTSIAFWNPLQEAFWVLGWSLVGGLLTWRFLRVKTVLLTVAITVISLTGIGWLLFSYFGLWVPIIPPAIALLTTSGIFFFLRSYTKSVE
>NC_010296.1|WP_012264054.1|342116_343244_-|DUF1822-family-protein
MVNDWLELTPDSIWLEIPADIQEISWAKSASFTDASIRQRFYVNYLCQQVIFNYLQSGMPGVSLVENQEDFWQLGVNGFTVKLGEKSVIVIASETLDLEAIEIPQEWVDIPQLIGDYYLAVQVNTAESYLRIWGYTTHKDIKEKGQYIKRNLNYSLPRNQLQSGSDSLNLWGECQLQPVKIEPEKMEEKLSLDRLTTLLDILANPQLIFPRKAVTFQEWAAVIVNSNWRKILITRRQKSPVKLTNWFADNFPIDWQSILDFSSLSLVPAFKNTEIKRIKDLGIELLGNSLALMITIAKIEEVFSLQATVYPTGETSTLPPHLKLTILTENGQVFREVIATDNDEFIRYRFDAELGDKFFIEVALESARVTEYLQV
>NC_010296.1|WP_012264055.1|343246_344494_-|hypothetical-protein
MKKRETLLEKFCCFLVLRQNRTEWNCDRRLRRNMESYGPIDPNVESEDYWSLFFHQQYQNHGSKNHLFRGHLYAYLQEPCYWAAAEIYQKYQAKLDYQIEDYFNEGILGFEAILADFKPLFSTRFDNFATQRIKYRLIDRIRQISQAFGHNTWSLLLNSTGARLSQALLARGLVGETLENYLLAWDYYKEIYAQAKIKTDGKIQEPSPEIWQKIAAAYNSDSHSTIKISSATITRWLKDAGQAISDYLFPQGKTISLQQPFGDGESSTREEMIEDTLHNNPWQQLEAAENFLDSQQNHQKILAWLGAEIEQICQQPQQAKLHPQIQLILEMTYGSGLGQVAIAAKITEITTVVIKQYQVSRELDKVYRHLAKKFLPWASENLHIPSQSHDREVISKAIEPWLTYYYQTSATTQED
>NC_010296.1|WP_012264056.1|344767_346621_+|ATP-dependent-zinc-metalloprotease-FtsH3
MNKNGNNKKWRNAGLYALLLIVVLALASAFFDRQPAVQQTWKYSEFLQEVREGKVETVRLSADRQRAIVPTQDGANVLVNLPNDPQLINILAENNVDISVLPQREEGVWVRAFSSLFFPILLLVGLFFLLRRAQSGPGSQAMNFGKSKARVQMEPQTQVTFGDVAGIEGAKLELNEVVDFLKNADRFTAIGAKIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAALLRPGRFDRQVVVDRPDYAGRKEILNVHSRGKTLAQDVDLDKIARRTPGFTGADLANLLNEAAILAARRNLTEISMDEINDAIDRVLAGPEKKNRVMSEKRKTLVAYHEAGHALVGALMPDYDPVQKISIIPRGRAGGLTWFTPSEDRMESGLYSRAYLQNQMAVALGGRLAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDRLGPVALGRQNGNVFLGRDIASDRDFSDETAAAIDEEVRNLVEQAYRRAKEVLVNNRVILDQLAQMLVEKETVDAEELQNILAHNDVKMAALA
>NC_010296.1|WP_012264058.1|347168_348116_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTTSSLPILIVICGATATGKSSLALQLAEKFNSVILSADSRQIYREFNIGTAKPSLEECQRIPHYLIDICDPQDNFTLAQYQEQAEDLINNLHYSPLFLVGGTGLYIKSIVKGLKIPRVSPQADLRRQLQALGQSYLYQILTQVDEEAAKKIHPHDQVRTLRALEVFYLTGKPISSQQGENPPTYPILQIGLDCSPESLGKRITVRTDQMIARGLVAEVQNLGDKYGWDLPLLQTLGYAEIKQYLLGEISLEQAIDLIILHTRQFAKRQRTWFRADADIIWFPVDKENLLESVEREIILFLEGLSRPDIKTHHPD
>NC_010296.1|WP_012264059.1|348057_349464_-|DUF2079-domain-containing-protein
MHKKNYLFWLVICGTIILFICSSIRHILFQSNALDLGWFDQGVYLISQGKPPIISFVDYHILGDHIAFILYPIALLYKIYPSVYWLLFLQAFSLSLGAFPLWQLAIQAGLKEKQAYTLALVYLLYPLIFNVNLFDFHPEVIAVPAIFWTILAARLNNLWGFCLGIIIILGCKAILSLTLLGMGIWLLLWEKKKISGIIAIITGILWFIIATKLLIPLLTGKSAVIEMADSRYSYLGDSLPAIIFNLFLKPDLVLGKIFTGNNLEYLILLIIPLVWGLSWRYSAPIIAAIPALALNLLADHAPQKNLTTQYSLPILPFLFLAVIATLAHNSSWLKQPKWIITWAIIAFFALAKYGYFWSLYLNSLDTWSATQKALTQITTSESVLTTSRIAPHLTHREMIKLAIEGSQSLDLNQFNYILLDRRHPGWSSSSELIDDHLNKLNQNDNFQLIVNQDDVFLYRALTTPQETK
>NC_010296.1|WP_012264060.1|349476_350334_-|amino-acid-ABC-transporter-substrate-binding-protein
MKLIILTLVILSNVFAALPAKSETVLEKIKRTGLLEVAMREDAIPFGYRDSNNNLQGLCLDFIQLLRGELKHKLNLRIISVKIYKSTLFNRFQLLENKTVDFECGPNSIRKNIPNAVSFSRPFFVTGTQFLVRSDNQNNFNFSSSLEGISIGVLRDTSTQELLRQKYPLATYQEFQGVTGRLRGIQSLRRNGIDAFASDGILLIGEAVILGLSLEKDYQLIPRNPLNCDYYGFILPANDPQWQEFINGVIVTSENRNIFKTWFTEVASYFIHTWQYCRNNPEESR
>NC_010296.1|WP_012264061.1|350352_351390_-|AI-2E-family-transporter
MKFGQWLGFICLIMALYVLWQIRQLLLLIFMAIVFTVALNRCVKGLQRLGIKRGLAILITLLTSLAIVILFFIIIVPPFIEQFQKLIELLPQAWDLVRNNSIQWRQQFQFDWLPSLPNLTDLFQQLQPLGTFVFSNFFTFFSNSVAAILQLLFVLVLAMMMLANPQPYRQAFLKLFPNFYRRRAEEILTLSEAGLGNWLLGIAISSTMVGLFSGFGLWLLQINLVLVHAILAGLLNFIPNIGPTASVIFPILIAVIDAPWKIVAILILYFIIQNVESYWLTPTVMAKQVSLLPAITLIAQIFFAQMFGILGLLLALPLTVVVKTWLDELLFKDILDKWDHGHNKS
>NC_010296.1|WP_012264063.1|352029_352827_+|pentapeptide-repeat-containing-protein
MKELERYYKVLGLDHGASLDEINQAYKDLVFIWHPDRIPKDNQRLLEKATAKLQEINHAREQLRQIHQNSPKRSNYPPKTEKQPAHAYKTASPYQPHPSQPGQNSQTHSHKTHSQQTHSQQTHSQHSHSQNNHQVHNHAAWRPHYRDLNGADLQGANLKEKDFSSRSLIGADLSHADLSDSFLHKVNLEKANLYKANLFRANLLEANLKGANLQEANLIGADLSGADLSAADLRGAKIGFGKRIMVKLTGAILTGTILPDGSIHQ

Crispr_ID: NC_010296_4

• CRISPR_ID: NC_010296_4
• CRISPR_location: 473126-473248
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: Cas14c_CAS-V-F

Consensus repeat of NC_010296_4

Consensus_repeat	Method
CTAGAAAAAAAGAGGTGCGTTACATTTCATTAAC	CRISPRCasFinder

spacers of NC_010296_4

>4.1|473160|55|NC_010296|CRISPRCasFinder
ACACCCTACCAGATCGGCGTACTGCTACGCAGTTCCTTCGGCATCGCACCACGGC

CRISPR arrays and Neighbor proteins around NC_010296_4

CRISPR arrays

The CRISPR arrays of NC_010296_4

>merge|NC_010296|4|473126-473248|CRISPRCasFinder
CTAGAAAAAAAGAGGTGCGTTACATTTCATTAACACACCCTACCAGATCGGCGTACTGCTACGCAGTTCCTTCGGCATCGCACCACGGCTAGAGAAAAAAGAGGTGCGTTACATTTCATTAAC

>NC_010296|4|3|473126-473248|CRISPRCasFinder
CTAGAAAAAAAGAGGTGCGTTACATTTCATTAAC	ACACCCTACCAGATCGGCGTACTGCTACGCAGTTCCTTCGGCATCGCACCACGGC
TAGAGAAAAAAGAGGTGCGTTACATTTCATTAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_004162995.1|477645_478533_-|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofG	unknown	unknown	gnl|CDD|180485
NC_010296.1|WP_012264172.1|481093_481354_-|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl|CDD|378301
NC_010296.1|WP_012264164.1|470606_470828_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264161.1|466321_468064_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173865
NC_010296.1|WP_012264168.1|475455_475797_+|DUF952-domain-containing-protein	unknown	unknown	gnl|CDD|377607
NC_010296.1|WP_004162992.1|469594_469939_-|DUF5615-family-PIN-like-protein	unknown	unknown	gnl|CDD|375906
NC_010296.1|WP_012264167.1|474076_475072_-|L-lactate-dehydrogenase	unknown	unknown	gnl|CDD|133428
NC_010296.1|WP_002794981.1|473265_473568_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264160.1|464983_466123_+|citrate-synthase	unknown	unknown	gnl|CDD|237591
NC_010296.1|WP_004162998.1|480711_481107_-|hypothetical-protein	unknown	unknown	gnl|CDD|227786
NC_010296.1|WP_012264159.1|463957_464695_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|226983
NC_010296.1|WP_041803699.1|472292_472637_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264173.1|481787_482498_+|sirohydrochlorin-chelatase	unknown	unknown	gnl|CDD|225049
NC_010296.1|WP_012264170.1|478645_480310_+|transglutaminase	unknown	unknown	gnl|CDD|224224
NC_010296.1|WP_002794978.1|469935_470229_-|DUF433-domain-containing-protein	unknown	unknown	gnl|CDD|225291
NC_010296.1|WP_002755102.1|472794_473049_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264169.1|475773_477087_-|cytosine-deaminase	unknown	unknown	gnl|CDD|236062
NC_010296.1|WP_012264165.1|471055_472243_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14c_CAS-V-F	-	gnl|CDD|223747
NC_010296.1|WP_012264162.1|468063_469332_+|glycosyltransferase	unknown	unknown	gnl|CDD|224732
NC_010296.1|WP_004162997.1|480306_480573_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_012264165.1|471055_472243_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14c_CAS-V-F	-	3.8e-83	274.5	14.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_004162995.1|477645_478533_-|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofG	gnl|CDD|180485	PRK06245, cofG, FO synthase subunit 1; Reviewed.	1.22518e-169
NC_010296.1|WP_012264172.1|481093_481354_-|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl|CDD|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	5.69926e-33
NC_010296.1|WP_012264161.1|466321_468064_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173865	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_010296.1|WP_012264168.1|475455_475797_+|DUF952-domain-containing-protein	gnl|CDD|377607	pfam06108, DUF952, Protein of unknown function (DUF952). This family consists of several hypothetical bacterial and plant proteins of unknown function.	4.44777e-34
NC_010296.1|WP_004162992.1|469594_469939_-|DUF5615-family-PIN-like-protein	gnl|CDD|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	6.6965e-16
NC_010296.1|WP_012264167.1|474076_475072_-|L-lactate-dehydrogenase	gnl|CDD|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	7.65101e-176
NC_010296.1|WP_012264160.1|464983_466123_+|citrate-synthase	gnl|CDD|237591	PRK14036, PRK14036, citrate synthase; Provisional.	0
NC_010296.1|WP_004162998.1|480711_481107_-|hypothetical-protein	gnl|CDD|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	2.29574e-07
NC_010296.1|WP_012264159.1|463957_464695_+|Uma2-family-endonuclease	gnl|CDD|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	3.41351e-15
NC_010296.1|WP_012264173.1|481787_482498_+|sirohydrochlorin-chelatase	gnl|CDD|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	1.46797e-25
NC_010296.1|WP_012264170.1|478645_480310_+|transglutaminase	gnl|CDD|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	2.35969e-23
NC_010296.1|WP_002794978.1|469935_470229_-|DUF433-domain-containing-protein	gnl|CDD|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	3.4369e-18
NC_010296.1|WP_012264169.1|475773_477087_-|cytosine-deaminase	gnl|CDD|236062	PRK07583, PRK07583, cytosine deaminase.	0
NC_010296.1|WP_012264165.1|471055_472243_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl|CDD|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.97689e-46
NC_010296.1|WP_012264162.1|468063_469332_+|glycosyltransferase	gnl|CDD|224732	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms].	4.0003e-71

Protein sequences

>NC_010296.1|WP_002755102.1|472794_473049_+|hypothetical-protein
MWWQSSRLDRIEASLEASQQRIERIESNIDRLAAISEATNRRIDRFVEATAQQMEESKARIDQLQQGMEQLQRAVGYFLSQDGN
>NC_010296.1|WP_041803699.1|472292_472637_+|hypothetical-protein
MSTLTLTYQSQSLNVSGLLDTGSSVNVLPYEMGLALGAVWENQRLSLPLGGNLARFEAGALVVKATVEQFPTVDLAFAWTQDKYAPLILGQMNFFLAFDVCFYRYDLAFEISQK
>NC_010296.1|WP_012264165.1|471055_472243_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MFVLEYKLRGKPSQYQAIDEAIRTVQFVRNKCLRYWEDNKGVGQKDVYKYVTQLRSEYPFVQDLNSTACQQACERTWTAILRFYNNCKNKIAGKKGYPKYSKRTHSVEFKKSGWKLNRNSKRITFTDGKNIGELKLIGSRDLFDFQEWQIQRIRIVKRADGYYCQLMLKLDARDITPQLESTGHCLGLDMGLKYLYADSNGNTVEPPKYYRKAEKRLHKLNRRKSKKFKRGQKQSNNYKKASQKYAKGHLKVSRQREEFAKKLALRLIQSNDLIAYEDLKVKNLVRNRKLAKSINDAGWSQLRKWIEYFGIKYGRLTIAVNPAYTSQECFNCGRLIQKSLSVRTHVCSCGYVEDRDKMAALNILKKATIGHIGSWSLDLNAWGDLSSILVGRNTC
>NC_010296.1|WP_012264164.1|470606_470828_+|hypothetical-protein
MLTTTQFAPLLKQLSYSDKLLLLNFLVAELLKDSGIAPMSIQDDLPRQGLHDSFEAAAILAQALKEKQELTHG
>NC_010296.1|WP_002794978.1|469935_470229_-|DUF433-domain-containing-protein
MTIITLSRYVTRNNEILGGEPIIEGTRTSIRAIVGLWRLGVMPEEIPTHLPHLTLAQVFDALSFYLDHQAEINEYIERNQVPDELVHPSVKAALGKL
>NC_010296.1|WP_004162992.1|469594_469939_-|DUF5615-family-PIN-like-protein
MSIFASLYMDEDMSALVATLLRSRGLDVTTVPEQSTLGKTDSEQLEFAASLGRCLVTHNRVDFERLHLQFIEEGREHCGIIVVPQKTAYEVVQRVSVLVNTLTVDSINNQLLYA
>NC_010296.1|WP_012264162.1|468063_469332_+|glycosyltransferase
MTHFGILCPTASGHINPLLPLGKELQKRGHKVTCFLTLDGEEMVQAAGLDFQAIAPDQYPKGTSAKNLAEIGQLQGTAAVRRTVQSVTNSTAALFETIPQEMRRLGIDALIVDQVSPSGGTIAEKLAIPFVSFAGALVLNRDPLIPPFMTIWDYNPSFIGVIRNKIGYKLLDSLTRPLNELINRQRQEWGLIPYQNINQRYSPIAQISQQPAEFEFPRQNLPAHFHFTGPFHDSSTRKTIPFPYEKLTGQPLIYASLGTIQNRLQSAFNAIAEACADLPVQLVLSLGNTDSNIQITTKNALVVPYAPQLELLTRASLTITHAGLNTTLESLAQAVPMVAIPITNDQPGVSARIKWSGTGEVIPISRLEVPRLRKAIEKVLSFPSYRENALRMQKALQKTGGVKMAADIVEKAISTGQPVLSV
>NC_010296.1|WP_012264161.1|466321_468064_+|ABC-transporter-substrate-binding-protein
MVKFWQGLTVFLISCLLLISLTACGNQVRRNQVVISVLSDPKTFNAVLSAESPNIFGLTYEGLLTENPITGKKEPVLAESWTISDDNLNIIFTMREGLKWSDGQPLTVDDVVFTYKDLYLNPDIPNNYRDSLRIGLKKEFPVITKLDNRRIEFKLPEPFAPFLDAVSSPILPKHALEKTIQKKSPDGRLEFLSTWGLDTPPDQIVFNGAYKLKEYITGQRIIFENNPYYWKKDDRGQQLPHITSVIWAIVESQDTTLLQFRSGSLDSIGVTPEFFSLLKTEEERGNFTIFNGGPAYGTQFIGFNLNQGKRDGKPLVDPIKSRWFNNLNFRQAIAYGINRQRMIDDIYRGLGQEQNSFLSIQSPFYDKTLKGYDYNPEKAKELLLEAGFKYNSDNLLVDADNNPVRFNLITNAGNKIREAIGAQIKNDLAAIGIQVDFQAIAFSNLVDKLSNSLDWEAHILGFTGDNEPHAPNIWYVDGNLHAFNQQPQPGSPPIQGWQAADWEKKIADLYVKGSQELDFEKRKVIYNEIQQLQQEYVPFIYLVNPLALGAVRNCFEGIQFSALGGAFWNLEELKKTCGGV
>NC_010296.1|WP_012264160.1|464983_466123_+|citrate-synthase
MTVCEYRPGLEGIPAAQSSISFVDGQKGILEYRGIRIEELAEKSTFLETAYLLIWGVLPTGAELDEFADEIRYHRRIKYRIEDMMKCFPEKGHPMDALQTSAAALGLYYARRALDNPEYIRQAVVRLLAKIPTMVAAFQLIRKGNHPIQPNDSLDYAANFLYMLTERRPTDLAAKVFDVCLTLHAEHTMNASTFSAMVTASTLTDPYGVIASAVGTLAGPLHGGANEEVLLMLEEIGSVANVRPYVEKCIANKQKVMGFGHRVYKVKDPRATILQNLAEQLFAELGSDEYYDIALELEQAVVDIYGEKGIYANVDFYSGLVYRKLGIPSDLFTPIFAISRVAGWLAHWKEQLNANRIFRPTQIYTGEHEVPYTPIEQRS
>NC_010296.1|WP_012264159.1|463957_464695_+|Uma2-family-endonuclease
MVRQLDDSPKTTIVYPDSDGKPMADNTRQFRWITTIKSNLDWLFANNADVFVAGDLLWYPVEGDNKTRQAPDVMVAFGRPKGERGSYQQWKENNIPPQVVFEILSPGNTPTEMTRKLLFYDRYGVEEYYIYNPDKNDLGGCIRRENRLESLENLDNWVSPRLGIRFQLAQPELLLYYPDGQPFTSYNQERQRAEAERQRAETESQRAEAERQRAETESQRAEAERQRAERLAAKLRELNINPEET
>NC_010296.1|WP_002794981.1|473265_473568_-|hypothetical-protein
MYATIEKVDIMSYASGEWTAFSFAITESAKNVFDAALKGFVGVGYTPLAFATQVVAGMNYCFLCKGKVVYPNAPDLVVLVYIYKPPQGAPHITKISQINP
>NC_010296.1|WP_012264167.1|474076_475072_-|L-lactate-dehydrogenase
MLDKIFTPNPYAEKPAPLRPRKGVIIGVGQVGMACAYSMLIQDCFDELILQDIATDKVEGEVMDLRHGMPFIEPTDLKMGTVADVGQNADVVIITAGAAQKEGETRLHLLERNVAIFRRILEDVAVYCPSALILVVSNPVDIMTYVTLKITNFPPSRVIGSGTVLDSGRLRSLLSTQLHVDARNVHAYIIGEHGDSELAVWSSANIGGARLLEGDWQDLSAADQESLTEIFLQVKNAAYEIIKRKGYTSYAIGLATTDIVKAILRSQERILTISTLLDGQYGLKDVCLSIPSVVNEKGVIKTLNLALSPREMEQLHNSAKIMRDLIDQLKI
>NC_010296.1|WP_012264168.1|475455_475797_+|DUF952-domain-containing-protein
MIYHITTERGWQIAREMGEYRAYSLKNEGFIHCSTLEQIPKVVAAFYQNQPDLLVLAISPEQLQSPVKWEQPQHPNPENATLELEKETFPHIYGAINLESVVFVKPLQDLINS
>NC_010296.1|WP_012264169.1|475773_477087_-|cytosine-deaminase
MIPSSERYWLKNAHIPVSLLENESFSPQTSEGLTLVNLEINDGNINRITSTIPPEDNIPVIDLKKKIVFPCFVDMHTHLDKGHSWQRCPNHDGTFDSALKMALEDSRREWRLEDVYRRMEFGVKCSYAHGTAAIRTHIDSFGQQAQISLTALAELQRQWAGKITLQAVSLVSLDYYQTSEGAALADKIAEFGGILGGVAYTNPDLQAQIDITFKLAQERGLNLDFHLDENGDPDSTCLAAIARTAIKEQFDGQIICGHCCSLAVQSPEIIQETLNLVKNAGIAIVSLPMCNLYLQDRQEEKTPFWRGTTKVKEMKKAGIPVAFASDNCRDPFYGFGDHDGLEVFTQAVRIAHLDTPYADWVNSVTLTPANLLGLPHLGRIKTGLEANLLIFKARYFSELLSRPQWDRLVIRRGLSIDTTLPDYQELDDLVLGIDQIL
>NC_010296.1|WP_004162995.1|477645_478533_-|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofG
MSRIVTYSPSHTLVPTYECFNRCSYCNFRRDLGTDGWLSLDKAKEILTALQGSEITEILILSGEVHPLAANRESWFRHIYNLAALALNMGFYPHTNAGILTFAEMEKLKNVNLSMGIMLEQMTVTLLNTVHRHAPSKVPSLRLEQLQWAGELGIPFTTGLLLGIGETECDRLVTLETIAAIHQRWGHIQEVILQPYNPGKREQWQNNPFDLQKLPDLVRQAREILPPDIVIQIPPNLVPDPLFLLDCLAAGARDLGGIGLIDEVNPDYLHLHPDKLKEFLAIYGWELKPRLPVYQ
>NC_010296.1|WP_012264170.1|478645_480310_+|transglutaminase
MIFDPASLPSHRQTIRPISATALHGIVFQDNKLIAIDAKNGYLYQIALDTGHTTVINSHRWQEFVGTTGLAIDDQNHLWFTTRENLYCCTLEDFTPKFFTRLPYTANGVAVTGNTIYVTCQRSGQIFIFDRQSGQEITRLYAPGIGIENITIRGEELWLTDTLEQTVYCLDRATGEQLFSMITPFESPTGLAFYRNANSGKDILYVAYAFQEPFIRDNPNSEQVYELSYRPRTFVHPLYFHYDPAKKYALSNGYLIELSYVEELEPLYNIELKDVEWRIALPLETPRQKIRSVEAVGLPFTEEIQDGQRVAVFKFKQITAKQRHIFGWKVVLEVWGIKYQITPQDCEDLPPLPADFPDRYLIDNDDLAMNTEIILNAAEEAIGRETNLLRKVYSIRNYVYDQLSYGIKPNIDTPDIALRRGVGSCGEYVGLLLALCRLNGIACRTVGRYKCPPHPLERNLPLEPDYNHVWMEFYLPSIGWVPMESNPDDIFEGGPYPNRFFMGLAWYHTEIAKDIPFERMLSEGQPVLKTQVPIGDLAINHVQFIILEELAPKD
>NC_010296.1|WP_004162997.1|480306_480573_-|hypothetical-protein
MNLRLVLFSGLVTALVGAGIGYGISRIERNPSQVNYRNPYNYQIIYRRYFAGAGAALGFCVGAGLQMVKELKEERDREMGILDDGSEF
>NC_010296.1|WP_004162998.1|480711_481107_-|hypothetical-protein
MLTFNSKTYGELLAHYQPKAITTEAENERAIAIAQELEHRSELSLEEEALLELLISLIERFEADNYPIPDINPLATLQHLIEANDIEYAELITILGSPDAVEQIINGQRSINQSEARSLGAYFRVDASLFT
>NC_010296.1|WP_012264172.1|481093_481354_-|type-II-toxin-antitoxin-system-HigB-family-toxin
MTNANSCESLYDWYRVASKAAWQNLIDVQATYKSAESVGNFTVFNIKGNHYRLIVDLVYNRQTIYIKYILTHAEYDKENWKNDAYF
>NC_010296.1|WP_012264173.1|481787_482498_+|sirohydrochlorin-chelatase
MAVTRLAALVQEKISQPAERLASKSEFSPSIAVLEADNRVLVGTAALELAITPLHQEIEAFAQQAQSQGCNRLQIIPLFLLSGVHVKEDIPAAVAKVRSPIELELKPHLGSYQGIKSLLSRQFADLSPQDRILLSHGSRRPGGNREVENLAAFSGAITAYWSIEPSLSQQIESLIAQGSPTIAILPYFLFTGAITDAIEAQVFELSQKHPNVNISLGKSLGATGELAEIIVEEGCG

Crispr_ID: NC_010296_5

• CRISPR_ID: NC_010296_5
• CRISPR_location: 546309-546474
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NC_010296_5

Consensus_repeat	Method
CCCTTGATAAGGGGGGTG	CRT

spacers of NC_010296_5

>5.1|546327|19|NC_010296|CRT
CCGATAGGCGGGGGGATAT
>5.2|546364|19|NC_010296|CRT
TCGATCCCCCCTTAATCCC
>5.3|546401|19|NC_010296|CRT
CCGATAGGCGGGGGGATAT
>5.4|546438|19|NC_010296|CRT
CCGATCCCCCCTTAATCCC

CRISPR arrays and Neighbor proteins around NC_010296_5

CRISPR arrays

The CRISPR arrays of NC_010296_5

>merge|NC_010296|5|546309-546474|CRT
CCCTTGATAAGGGGGGTGCCGATAGGCGGGGGGATATCCCTTGATAAGGGGGGTGTCGATCCCCCCTTAATCCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGGGATATCCCTTGATAAGGGGGGTGCCGATCCCCCCTTAATCCCCCCTTGATAAGGGGGGTG

>NC_010296|5|2|546309-546474|CRT
CCCTTGATAAGGGGGGTG	CCGATAGGCGGGGGGATAT
CCCTTGATAAGGGGGGTG	TCGATCCCCCCTTAATCCC
CCCTTGATAAGGGGGGTG	CCGATAGGCGGGGGGATAT
CCCTTGATAAGGGGGGTG	CCGATCCCCCCTTAATCCC
CCCTTGATAAGGGGGGTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_125730803.1|541177_542355_+|IS630-like-element-ISMae25-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_002733641.1|548118_549273_-|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl|CDD|132449
NC_010296.1|WP_041803722.1|534131_535991_-|iron-uptake-porin	unknown	unknown	gnl|CDD|335962
NC_010296.1|WP_002733700.1|553398_554004_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|238734
NC_010296.1|WP_012264230.1|549276_550437_-|urea-ABC-transporter-permease-subunit-UrtB	unknown	unknown	gnl|CDD|200272
NC_010296.1|WP_012264225.1|538978_540637_-|IS1634-family-transposase	unknown	unknown	gnl|CDD|379471
NC_010296.1|WP_012264231.1|550531_551848_-|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|372603
NC_010296.1|WP_012264220.1|532761_533436_-|TIGR04283-family-arsenosugar-biosynthesis-glycosyltransferase	unknown	unknown	gnl|CDD|275103
NC_010296.1|WP_158303487.1|552105_552258_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_004163047.1|536380_536767_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_158303488.1|552543_552696_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002777289.1|552852_553185_-|TMEM165/GDT1-family-protein	unknown	unknown	gnl|CDD|225030
NC_010296.1|WP_004163062.1|547258_548005_-|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl|CDD|274568
NC_010296.1|WP_012264228.1|545026_546250_-|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|272992
NC_010296.1|WP_002732425.1|552254_552530_-|TMEM165/GDT1-family-protein	unknown	unknown	gnl|CDD|225030
NC_010296.1|WP_041803720.1|533422_533626_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041803727.1|542852_544532_+|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl|CDD|236471
NC_010296.1|WP_012264224.1|537089_538466_-|cobyrinate-a,c-diamide-synthase	unknown	unknown	gnl|CDD|234896
NC_010296.1|WP_012264229.1|546521_547220_-|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl|CDD|274567
NC_010296.1|WP_012264221.1|533667_534084_+|CoA-binding-protein	unknown	unknown	gnl|CDD|224745

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_125730803.1|541177_542355_+|IS630-like-element-ISMae25-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.3303e-19
NC_010296.1|WP_041803727.1|542852_544532_+|phosphoenolpyruvate-carboxykinase-(ATP)	gnl|CDD|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NC_010296.1|WP_041803722.1|534131_535991_-|iron-uptake-porin	gnl|CDD|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	1.69777e-38
NC_010296.1|WP_002733700.1|553398_554004_+|VWA-domain-containing-protein	gnl|CDD|238734	cd01457, vWA_ORF176_type, VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. The members of this subgroup are Eubacterial in origin and have a conserved MIDAS motif. Not much is known about the biochemistry of these.	3.56906e-99
NC_010296.1|WP_012264230.1|549276_550437_-|urea-ABC-transporter-permease-subunit-UrtB	gnl|CDD|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	7.35345e-111
NC_010296.1|WP_012264225.1|538978_540637_-|IS1634-family-transposase	gnl|CDD|379471	pfam14104, DUF4277, Domain of unknown function (DUF4277). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 110 amino acids in length. There is a conserved NGLGF sequence motif.	5.96203e-54
NC_010296.1|WP_012264220.1|532761_533436_-|TIGR04283-family-arsenosugar-biosynthesis-glycosyltransferase	gnl|CDD|275103	TIGR04283, glycosyl_transferase_family_2, transferase 2, rSAM/selenodomain-associated. This enzyme may transfer a nucleotide, or it sugar moiety, as part of a biosynthetic pathway. Other proposed members of the pathway include another transferase (TIGR04282), a phosphoesterase, and a radical SAM enzyme (TIGR04167) whose C-terminal domain (pfam12345) frequently contains a selenocysteine. [Unknown function, Enzymes of unknown specificity].	7.68962e-114
NC_010296.1|WP_012264231.1|550531_551848_-|urea-ABC-transporter-substrate-binding-protein	gnl|CDD|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NC_010296.1|WP_002777289.1|552852_553185_-|TMEM165/GDT1-family-protein	gnl|CDD|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	1.41269e-24
NC_010296.1|WP_012264229.1|546521_547220_-|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl|CDD|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.15821e-130
NC_010296.1|WP_002732425.1|552254_552530_-|TMEM165/GDT1-family-protein	gnl|CDD|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	1.90018e-23
NC_010296.1|WP_012264228.1|545026_546250_-|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|272992	TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. [Unknown function, Enzymes of unknown specificity].	5.92452e-172
NC_010296.1|WP_002733641.1|548118_549273_-|urea-ABC-transporter-permease-subunit-UrtC	gnl|CDD|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.27573e-150
NC_010296.1|WP_012264224.1|537089_538466_-|cobyrinate-a,c-diamide-synthase	gnl|CDD|234896	PRK01077, PRK01077, cobyrinate a,c-diamide synthase.	0
NC_010296.1|WP_004163062.1|547258_548005_-|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl|CDD|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.24895e-153
NC_010296.1|WP_012264221.1|533667_534084_+|CoA-binding-protein	gnl|CDD|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.20421e-51

Protein sequences

>NC_010296.1|WP_012264228.1|545026_546250_-|NAD(P)/FAD-dependent-oxidoreductase
MTQIVVIGGGAAGFFGAIKAAESNPKAGVTILEAAKEPLAKVRISGGGRCNVTHHCFDVSQLVNYYPRGGKALRGAFSRFQPQDTIKWFELRGVKLKTEADGRMFPSTDNSETIVNCLRESATFAGVNLRLNSPVKSVKKQEESFLIELKRDEQIRADKLLIATGSSPFGYRTAQDLGHSLVSPVPSLFTFQIADPRLKDLLGVTVDKVRVRLGGSKLEQIGPLLITHWGVSGPAILKLSAWGARVLHEHHYRMPLIINWLGDYHPEKLREIILQTKSEYPKRKLFNYCPFEQLPKRIWQSLLSYLTVNSETPWAELSKNTLNRLMIELQQGEYQIKGKGVFKEEFVTAGGVNLQEVDFKTMESKICPGLYFAGEVLDIDAVTGGFNFQSAWTTGYLAGQAMGNRRV
>NC_010296.1|WP_041803727.1|542852_544532_+|phosphoenolpyruvate-carboxykinase-(ATP)
MPTLHTLTNDSISCPLPDRVENVNFHYELENQFHPTYGLENLGMKNLGRVYRNLSVPQLVEQAIERHEGVLADNGALVVETGKYTGRSPKDKFIVKEATSEKEIDWNQHNAPISEEKFQQLYRKVLAYVQGKDLYIFDGYVGSDPNCRFGVRVVTEIAYHNLFAHQLFLRPSAVELAAHQTDFTVIALPGLQGDPEDDDLNSEAFIVLNLAKKIVLIGGTRYAGEIKKSVFSMMNYLMTKQGVLPMHGAANMDKHGHTALFFGLSGTGKTTLSADPKRSLIGDDEHGWSEDGIFNFEGGCYAKTIRLSAEYEPQIWAAIQFGTILENVILSPDNRLPDYDDGRLTENTRAAYPLRYIPNCAVSGMGTHPKTIIFLTADAFGVLPPIAKLTTNQAMYHFLSGYTSKLAGTERGITAPQVTFSSCFGQCFFPLSPLVYAQMLGERLEQHPETSVYLINTGWSGGPYGVGDRISIKHTRAMVSAALNGDLEEVVFHPHPIFQVLVPEIVPGVPKKILDPRQAWQDGESYDLQARELAHRFVENFRQFTTASQEIIAAGPIWE
>NC_010296.1|WP_125730803.1|541177_542355_+|IS630-like-element-ISMae25-family-transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTPKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>NC_010296.1|WP_012264225.1|538978_540637_-|IS1634-family-transposase
MNQSTEIEVKNLDHLGLVAGIIDEIGIVEIINEQVSIERGEIVTAGQVVKAIILNGLGFVSRALYLFPQFFEDKATEHLLGEGIEPKHLNDDKIGRVMDKLYQLNVSVIFLLISLAAVKKFGVATENSHLDSTSLSVEGEYKKEYPTVEILKSGAVGEEIETRQQPIKITYGYSRDRRPDLKQFMIDLIVSGDGDVPLFLKVGDGNEADKAVFGQIAREFQKQVDFDSLIVGDSALYSKENLKLMKEMRWLSRVPLSIKEAQELVDSISEKELTDSEIPGYSWRETSSNYGGIEQRWLLVESQARQESDLKKLEKKIEQEKNSAQEKIRQLSRREFENRAVALAIAKGLSDSLKSHQLTEIKVNLIPPESQQSKLKSKDDLPSQSYQVQAELELNLAAIERLKKRAGRFVLATNDLEKKRLSSEDILKKYKGQQAPERGFSFLKDPCFFADSVFLKSPHRIEVMAMLMGLCLLVYTIGQRQLRLSLKQQETGLKNPLGKLTDRPTLRWIFQCFQGIHLVRIQDNQKISNLTDERRNILRFFPKPCQEYYLLS
>NC_010296.1|WP_012264224.1|537089_538466_-|cobyrinate-a,c-diamide-synthase
MIIAGERSGVGKTTITLAILAYLISRGDRVQSFKVGPDYIDPMFHSHFTGRPCRNLDPVLTSEDYVKTGFAQHCQNVDYALIEGVMGLFDGIQLSDTQFPDYASTAHIARILGLPLLLVIDCSRLSTSVAAIVRGYQSLDKNLHLAGVILNRVGSDRHLQLLQTALESINMPIVGVLRRQDSLTIPDRHLGLVPRDELGEIRQLQDQLASIAQNCFNWDILLPLLTISPQENPKNPTEENKLFPPIRIGIARDKAFNFYYPDNLDILANLGAELIFWSPLQGANLPENLQGLYFGGGFPEIFAPELAANTPILTQVRKAIASGMPTYAECGGLMYLCEKIVDFEQKNHSMLQIIPQSAIMSPKLTLGYRQAIAKQETILLKAGQPVRGHEFHRSQLSGVSDAPIYQLQAFPKSDINAEGWQGKNLHASYLHLHFGANLSLPKKFLAAGLDFFRTAALS
>NC_010296.1|WP_004163047.1|536380_536767_+|hypothetical-protein
MKKRKIANTLRKALLEDGKMERALYEYELEEHIDYWYEGLKSDRDQFVFAVTENSGDVAMVLITPGKTIYVNEEAREKLAKFWIKAYENNINQLIPMMAENLANDIISVTGVKMVSPNQKRRWVSLRP
>NC_010296.1|WP_041803722.1|534131_535991_-|iron-uptake-porin
MLRMFWKSLLVSPAILGATLVASANASSFDPVKSTSVSTEFNNLEIAQVQNTGAGTGELLNQIEQYGNEGQVAPVQGNTIDQVTSVNQLRDVSPTAWAYEALRSLVERYGCIVGYPDRTFRGDRALTRWEFAAGLNACLNVMERLIQDGVNVLKEDLDALKRLMDEFQAELAALGARVDNLESRVSFLENNQFSTTTKLAGEVIFAVTDTVGAGSPASQAAMQYRARLLLNTSFTGQDVLKTRLAAGSATPFGFDYKSTTTLQNGDPASVRFDNLQSPSLFQTWTAAGNGSNVVLDWLAYYTPIDLGYFGRFNTYVAAWGGIWNDFVPTTNPFFEDFDGGNGALSTFASENPIYRIGGGSGAGVSLQLGFLQSIVGPTSLSLGYLAGGGGSSSAANPNPGNGLFNGDYAALAQINANLFNFLNVGFTYVNAYQGADTAIFGNGGSFGVTGTSAANLSQTQLNTLLNVNGNDPDSVTLQDEVGFFNFGAKVSNSYGLTGAVDIGFASLSAFGSYSTVRLLGLGDAEVWTYGAGIAFPDLGKEGNILGLFAGAQPYIGHLSFRDMGLKVSNIVPYHVELFYKYQVTDNISITPGVIWISAPEQFKGTGNEWIGTLRGTFTF
>NC_010296.1|WP_012264221.1|533667_534084_+|CoA-binding-protein
MPNIKGDDGALKTIFSNSKIIAVVGHSEKSSRASYQVAKFLQAVGYRVYPVNPMVQQIDGQSCYPSLEAIPEPVDIVNVFRHPDYLPEIVESAIAIGAATLWTQLRIYHPVAEKKAIEAGLNVIMDACIQIEYQRLFA
>NC_010296.1|WP_041803720.1|533422_533626_-|hypothetical-protein
MKCNLIWYRLLTPALATLKNWQQCLTFLPKKQLLPIPVNPWVFVGKFTRWSPLNPLTLVSAKPDELS
>NC_010296.1|WP_012264220.1|532761_533436_-|TIGR04283-family-arsenosugar-biosynthesis-glycosyltransferase
MNYLSIIIPTLNEELRIAATLKQIGAGVEIIVVDGGSTDKTREIAEQLGGKVIISPSKGRGFQMNLGAKIAKGDILLFLHGDTLLPQEFQEQIINTLSQSGIVAGAFELKIDGEEKTLRLVEKLVNWRSRWLSLPYGDQGIFLKASIFADLGGFPELPIMEDFELIQRLKKRGKIAIVSAPVITSARRWQKLGVAKTTLVNQLVIIGYYLKIPPHLLKIFYRLW
>NC_010296.1|WP_012264229.1|546521_547220_-|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLHISDLNVYYGESHILRDVDLNINAGEMVCLIGRNGVGKTTLLKTLMGILKPRAGTINYEQENLINKTSDQRARLGLGYVPQGRDIIPRLTVKENLILGLEALPTKRKNATIPEEIFDLFPVLKTMLSRMGGDLSGGQQQQLAIARALVGEPKLLILDEPTEGIQPSIILEIEAAVRRIVASKGIAVLLVEQHLHFVRQADRYYAMQKGGIVASGFTSELSQEVIQRFLSV
>NC_010296.1|WP_004163062.1|547258_548005_-|urea-ABC-transporter-ATP-binding-protein-UrtD
MTGKILEIENLTVSFGGFKALNNLNFSMDTGELRVIIGPNGAGKTTFLDVITGKVQPTIGRVLFKGRDLRKIPEYAIARLGIGRKFQTPRVYLNLTVRENLDLVSNRNKNVFSTLFGRPPLEDSRKVIGLLETIGLTAKADLPASLLSHGEKQRLEIGQLVAQSPDLLLVDEPVAGLTDEETENVGNLLLNLAESHSIIVIEHDMEFVRQIARKVTVLHQGTVLCEGNMEQIQNDPKVIEVYLGSSEE
>NC_010296.1|WP_002733641.1|548118_549273_-|urea-ABC-transporter-permease-subunit-UrtC
MITETITRNESRQREKKKLITEIAVIVGLVVIFAVLLPLALSAFRLRLLGRFLSLAIVALGIDLIWGYTGLLSLGHGIFFALGGYALAMYLNLQLPPGQMPEFFTLYGVTELPFIWQPFYSLPLTILALIIVPAIVAGLLGYLIFRNRIKGVYFSILTQAALLVFFNFFNGQQKLINGTNGLKTDTQTIFGLLVGSDAVQVAFYLLTIVCLLAIYLLCRWLTTGRFGRLLVAIRDDEVRVRFSGYDPTWFKVLVFAISGAIAGVAGALYTVQTGIITPNSMDVAFSIEMVIWVAVGGRATLVGAVVGTLLVRLAQTFLSEQFPEVWVFFQGALFLIVVTVLPDGLLGGIKRLLTHFGFRKTLITYPSIEEAPEVQLEKEELEHK
>NC_010296.1|WP_012264230.1|549276_550437_-|urea-ABC-transporter-permease-subunit-UrtB
MSALLEGLFNGISIGSVLLLAALGLAIVFGLMGVINLAHGELMMLGAYSTFVVQNVFKGFGSPLFDTYVLFALPIAFLVSGLAGLLLERGVIRFLYGRPLETLLATWGVSLILQQFVRSVNGLLVISLIVFCLLFFGAMTVLSRRLDWERIRNLTIGITLPLSLAIAGLLGYLLSFNPVLARPWFSARNVDVTAPAWLRGGLPLPGFQMPYTRLFIIILTALCLLGTYWFLNKSSWGLRIRAVTQNRQMSACLGIPTNQVDALTFALGSGLAGVAGCAISFLGSVGPNVGQNYIVDTFMVVVVGGVGNLLGTIIAAMAIGVANYLIGSGTFALIFGSVEALKPLTDFFTFFSTTSMAKVMIFALIIAFLQFKPAGIFPPKGRTAEL
>NC_010296.1|WP_012264231.1|550531_551848_-|urea-ABC-transporter-substrate-binding-protein
MSNLGRRKFLLYGSAALGTSILLKACGGNQSQTPTASPSPAASPAPTSGETIKVGILHSLSGTMAISETSVVDAEKLAIEEINAAGGVLGKQIEAVVEDGASDWPTFAEKATKLIDQDKVATVFGCWTSASRKAVLPVFEAKNHMLWYPVQYEGQECSRNIFYTGAAPNQQIEPAVTWLLENKGKKFFLVGSDYVFPRTANTIIKEQLKAKGGETVGEDYLPLGNTEVTPIITKIKQALPDGGVIFNTLNGDSNVAFFKQLQAAGLTPDKYPVMSVSVAEEEVKQIGKEYLLGQYACWNYFQTVDTPANKKFVEAFRAKYGPERVTNDPMEAAYIMVYLWKQAVEQAGTADDLDKVRAAAVGQKFDAPEGPVEMFPNHHISKTVRVGQVRDDGLFDIVWSTPGVVDPQPWNQFVPETKGFACDWTDPAKGGKFKMEKS
>NC_010296.1|WP_158303487.1|552105_552258_-|hypothetical-protein
MIIRFAAKSFSWGQGVGCGVWGVGCGVWGVGRINRNNLLSPVSCLLSPIS
>NC_010296.1|WP_002732425.1|552254_552530_-|TMEM165/GDT1-family-protein
MNWQLFGLTFITVFLAEIGDKSQLVAIALGGSSKSPKAVFFGSITALICTSFLGVLAGGSMAQLFPAKILKAIAAIGFALLAVRLLWPDSD
>NC_010296.1|WP_158303488.1|552543_552696_+|hypothetical-protein
MGDGEVGKWGSGEVGRWGSGEVGKWGSGEVGCGVWGVGCGVWGVGCRKNK
>NC_010296.1|WP_002777289.1|552852_553185_-|TMEM165/GDT1-family-protein
MSDSKSIASTEKKPDQPPSWSFWTVFSSTFLTIFFAEIGDKTQLATLLISAESQSPWVVFAGAATALIATSLLGVLIGYWIARRLSPKTLDIGVAILLLLITGLLIGDIL
>NC_010296.1|WP_002733700.1|553398_554004_+|VWA-domain-containing-protein
MVENRDYTLIIDKSGSMSTADKPSEKTRWQIAQESTLALARKCEEFDPDGITIYLFSGRFRRYDNVTSDKVTQIYQENEPMGRTDLAAVLQDALNNYFQRKTAGKTKPNGETILVITDGEPDDRKAVMRQIIEASRKLDRDEELAISLIQVGHDRQATEFLKALDDQLESAGAKFDIVDTITIDDMEDMTLAEVLLNAVTD

Crispr_ID: NC_010296_6

• CRISPR_ID: NC_010296_6
• CRISPR_location: 835367-835457
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_6

Consensus_repeat	Method
GATTTGCGTTGAAGCACTTTTTTGC	CRISPRCasFinder

spacers of NC_010296_6

>6.1|835392|41|NC_010296|CRISPRCasFinder
TTGCTGTATAAGGGTTTCGCCGATTTGACATCCCTAAAATG

CRISPR arrays and Neighbor proteins around NC_010296_6

CRISPR arrays

The CRISPR arrays of NC_010296_6

>merge|NC_010296|6|835367-835457|CRISPRCasFinder
GATTTGCGTTGAAGCACTTTTTTGCTTGCTGTATAAGGGTTTCGCCGATTTGACATCCCTAAAATGGATTTGCGTTGAAGCACTTTTTAGC

>NC_010296|6|4|835367-835457|CRISPRCasFinder
GATTTGCGTTGAAGCACTTTTTTGC	TTGCTGTATAAGGGTTTCGCCGATTTGACATCCCTAAAATG
GATTTGCGTTGAAGCACTTTTTAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_125731851.1|834179_835287_+|peptide-chain-release-factor-2	unknown	unknown	gnl|CDD|234799
NC_010296.1|WP_012264465.1|825631_826759_+|RNA-methyltransferase	unknown	unknown	gnl|CDD|236981
NC_010296.1|WP_012264467.1|828209_830861_-|family-10-glycosylhydrolase	unknown	unknown	gnl|CDD|224563
NC_010296.1|WP_004163480.1|842141_843134_-|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NC_010296.1|WP_158303490.1|827999_828167_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002739055.1|837257_837509_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264466.1|826759_827737_-|malate-dehydrogenase	unknown	unknown	gnl|CDD|133424
NC_010296.1|WP_012264474.1|840414_841170_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NC_010296.1|WP_004163481.1|841228_842017_+|ECF-transporter-S-component	unknown	unknown	unknown
NC_010296.1|WP_012264468.1|832777_833890_+|DUF3747-domain-containing-protein	unknown	unknown	gnl|CDD|372192
NC_010296.1|WP_041803792.1|838884_839508_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NC_010296.1|WP_012264475.1|843645_844761_+|type-IV-pilus-assembly-protein-PilM	unknown	unknown	gnl|CDD|227306
NC_010296.1|WP_004163484.1|837601_838765_-|ferrochelatase	unknown	unknown	gnl|CDD|178068
NC_010296.1|WP_002758722.1|827763_827979_-|NAD(P)H-quinone-oxidoreductase-subunit-O	unknown	unknown	gnl|CDD|371791
NC_010296.1|WP_004163483.1|839607_840162_+|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl|CDD|225090
NC_010296.1|WP_012264463.1|823757_824108_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_004163474.1|844770_845541_+|PilN-domain-containing-protein	unknown	unknown	gnl|CDD|225707
NC_010296.1|WP_012264307.1|824159_825008_-|IS630-like-element-ISMae21-family-transposase	unknown	unknown	gnl|CDD|279973
NC_010296.1|WP_004163487.1|831039_832389_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl|CDD|235059
NC_010296.1|WP_004163472.1|845537_846329_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_125731851.1|834179_835287_+|peptide-chain-release-factor-2	gnl|CDD|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NC_010296.1|WP_012264465.1|825631_826759_+|RNA-methyltransferase	gnl|CDD|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	9.64378e-160
NC_010296.1|WP_012264467.1|828209_830861_-|family-10-glycosylhydrolase	gnl|CDD|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	3.8525e-63
NC_010296.1|WP_004163480.1|842141_843134_-|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NC_010296.1|WP_041803792.1|838884_839508_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.22565e-23
NC_010296.1|WP_012264466.1|826759_827737_-|malate-dehydrogenase	gnl|CDD|133424	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	7.68008e-178
NC_010296.1|WP_012264474.1|840414_841170_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.2246e-10
NC_010296.1|WP_012264468.1|832777_833890_+|DUF3747-domain-containing-protein	gnl|CDD|372192	pfam12565, DUF3747, Protein of unknown function (DUF3747). This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.	1.21143e-95
NC_010296.1|WP_012264475.1|843645_844761_+|type-IV-pilus-assembly-protein-PilM	gnl|CDD|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	4.68081e-136
NC_010296.1|WP_004163484.1|837601_838765_-|ferrochelatase	gnl|CDD|178068	PLN02449, PLN02449, ferrochelatase.	0
NC_010296.1|WP_002758722.1|827763_827979_-|NAD(P)H-quinone-oxidoreductase-subunit-O	gnl|CDD|371791	pfam11910, NdhO, Cyanobacterial and plant NDH-1 subunit O. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. homologs of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The three nuclear-encoded subunits NdhM,NdhN and NdhO are vital for the functional integrity of the plastidial complex.	1.27206e-36
NC_010296.1|WP_004163483.1|839607_840162_+|YqeG-family-HAD-IIIA-type-phosphatase	gnl|CDD|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	9.28226e-58
NC_010296.1|WP_004163474.1|844770_845541_+|PilN-domain-containing-protein	gnl|CDD|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	1.90035e-19
NC_010296.1|WP_012264307.1|824159_825008_-|IS630-like-element-ISMae21-family-transposase	gnl|CDD|279973	pfam01710, HTH_Tnp_IS630, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes insertion sequences from Synechocystis PCC 6803 three of which are characterized as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily.	1.47772e-44
NC_010296.1|WP_004163487.1|831039_832389_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl|CDD|235059	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0

Protein sequences

>NC_010296.1|WP_125731851.1|834179_835287_+|peptide-chain-release-factor-2
MEISELKKGIEIVGLRLGKTQDYLDLPTLRAKIKDLEQVAAVPTFWDNLDTAQKTLQELNECKSSLETYQGWCGQLEDTKAIIELLELESDRTLLEEATDNLTHLQHDLDRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGYKVTLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVEVMPILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAREQQAQAIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRSNVETTDVTRVMNGDLDSFIEAYLRLGGAV
>NC_010296.1|WP_012264468.1|832777_833890_+|DUF3747-domain-containing-protein
MNLKSSLKFTLLFSLLGGCLLTTPSQATLFEQREVNQEDFIAIARPYGNGKYDLLILQQIPGKRQCWAVNGTEPTIVQPLLLDFDFTGSCERATDSNGYSLRIQGKDYGLEYLLRIVQRNGELVLVGTPRNPRQSEVIIGRTKGLGSGLMQIYLIDGWRFTKRSLAGQNLSHIYLTADSPNFNPPPELLAGNSYSLPRESVKAETPVNPAANPEVREYTFTAAETAVESNPQPVVNNPVPEPNLTPPSPVTPNLPPLTPPNSQNNNAIVPPPPPRNLGNPRSLSDVITFNRAAANPSSGNMSNSSRQGFKVVIEAKTESDRTRVRSLYPDAFPTSHQGRRVWQIGAFSSRDKAENALQTLAPLRGSIVPF
>NC_010296.1|WP_004163487.1|831039_832389_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MAKAAIIGLGRSGIAAARCLKRDGWQVTLSDRSDSPSLQATKTNLEREGIIVNLGQNLSLEASDLPNLIVVSPGVPWDAPILITAREKGIDTIGELELAWRYLQSSPWLGITGTNGKTTTTALCAAIFQKAGLNAPSCGNIGYAACELALKADKYDWIIAEISSYQIESSRDLSPKIGIWTTFTPDHLSRHQTLENYYQIKASLLQRSDRQILNGDDPYLRQIGVSQWQQAYWTSVQGKAALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYVCTYKGLDFINDSKATNYDAAAVGLQSVPSPAILIAGGEAKAGDDRAWIAEIKAKVATVLLIGDAAADFARRLQSAGYQDYECVETMDRAVQRAAELGPAKEAKVVLLSPACASFDQYPSFEHRGTHFRQLSLQL
>NC_010296.1|WP_012264467.1|828209_830861_-|family-10-glycosylhydrolase
MLGSSFHLDHLFNKPLIACLLSCVGVLLPIPVLATPVAVLKSQENANQWTDITERLQNVGVNYCILQSNQWQSDADLNKIKVLIIPNVETISGLQADVLSRWLNRGGKIIVTGPAGNLSEPAVRHQLRSLFGAYWAYPHSQAYTLRPTNLGELKNQKPLASSLLGGVVIPTGVNSQTVAVWGARNNPPAVVLNNNSIFLGWRWGSDAVANLALDSAWLETALQRYGINRSSSNNTIAPYCQGQSTIVNNINNTPTAISRSERVAIAPRRPLPQISENPPSETARLSPSTEAIPPRASLTPQQISQMTAELQGLIGRYGVTLLALEASNSNISNTDKSLAQAFHNRGKNSPTSDTARQFRLALENAQGALNNFQNLIAQGAYTQAREFWLQARRSLWDNYPTNRQFAQPEIRAMWLDRGTIVEAKNEEDLAKVFDRMAAAGINVVFFETVNASYTIYPSQVAPEQNPLTRGWDPLKVAVKLAHERNMEIHAWVWVFAAANQAHNKVLEQPLDYLGPVLSRNPDWGATNKSGGSFDYSQGMKKAFFDPANPEVQNYLLSLYEEIVKNYDVDGLQLDYIRYPFQSQDSNQTYGYGKSGRWLFKQMTGVDPITLNPRGALWEQWTSFKIRQVDTFVSQVSTRLKQIRPHLKMSAAVFPLEQKERLYRIQQNWEEWGQNQWIDLIFLMTYALDTGTLEDKTKSLFDRQIAGNALIIPGIRLLKVPDQVTIDQLQFIRNLPTSGFALFATENLNPNLQTILNRIQGSIITKKTEPLPHRQPFKTAAARFNSLRQEWSFLIINNLWAMEEGTLKAWGQEVDEMANLLEQLANNPSPRNLTLTQNALKRFSYKFKSVMSRQKDLSAYQIQVWENRLATLQSLLSYGQMVEF
>NC_010296.1|WP_158303490.1|827999_828167_+|hypothetical-protein
MGVSSINCYIFRRASDKRVWGVGCGVWGVGCGVWGVGMMNYEVGRWGSGEIELKP
>NC_010296.1|WP_002758722.1|827763_827979_-|NAD(P)H-quinone-oxidoreductase-subunit-O
MAATIKKGALVRVVTGNLENSLEALASDRRLPSYMFNSTAEVLDVKDDYALIKFYVPTPSVWLKLEQLEPV
>NC_010296.1|WP_012264466.1|826759_827737_-|malate-dehydrogenase
MVDFYDTLIPCQSPRVSVIGAGNVGRTLAQRIAEKNLADVVLLDIVNGLPQGIALDLMEAQGIELHDSEIIGTNNYEDTAGSDIVVITAGLARKPGMSRDDLMNVNAKIVVEAATKCLKYSPEAIFIVITNPLDVMTYLVWQATGLPPQRVMGMAGVLDSSRLQTFIAMELGVSTADVHAMVLGGHGDLMLPLPRYCTVSGVPITELMDEMTINRLVERTRNGGAEIVKLLQTGGAYYAPASSACIMVETILRNQSRLLPAAAYLKGEYGLQDVYLGVPCRLGCRGVESILEVRLTDAERLDLHTSAASVRQNVHLALDSLKVLM
>NC_010296.1|WP_012264465.1|825631_826759_+|RNA-methyltransferase
MTRSYFATTARGLEEIAARELEFLGAKEVKPVFTGVHFQGDISLLYRVNLWSRIMFRVLVPIAEIPCGDGKELYDGIQAIDWRDYLTSEETLAVQCTGTNDRLNHTHYTALSIKNAIIDQQRQQGNPRSFVDTENPDLQINAHIEKNHCVLSLDSSGHSLHRRGYHRAMGVAPLKESLAAALVELSAWQDDMALLDPFCGSGTIVIEATLKALNIAPGLSRSQFGFQKWPDYQPDLWQSLVKEAKEKQKSRLNAPIYASDADYEVLHQAEDNAYFCQVQDHINFSLQSITDLEPASDRGIILCNPPYGKRLGNTEELGALYKSFGDVLKQRFKGWTAYILSGNKELTKQIGLRSSRRTPLYNGSLPCTLLKYELY
>NC_010296.1|WP_012264307.1|824159_825008_-|IS630-like-element-ISMae21-family-transposase
MSYSLDLRKKVIDYVENGGSITKAAALFNIGRATIYRWLGREKLEATKVKHRQRKLDWKALSKDVQENPEARLRDRAEKFGVRPSAICYALKNMKVTRKKKELRYRERNREERMKYYRVLRELIKIYGSESLVFIDESGFEEFQACFYAWSKKGKKVFGDRQGKRGKRENLVAGRRKGKKDFIAPMVFTRSLNAEGFEGWLSLYLLPSLTITSVLIMDNAPIHRKTVIKQLVEEAGHQVVFLPKYSPDLNDIEHDFSALKRARMYAPVGTPLDEIIRTYCVA
>NC_010296.1|WP_012264463.1|823757_824108_+|hypothetical-protein
MTAGTRNQTDKKTRKKPKSGNKSQNWQVIEIWLRIIAYSAISITAVFAIARLLPYQQIQQAKLEEVRLAAQEKEERVNQLRGQFTRSFDPSQARQVMGEQSPRRDPNQRRIFWVSQ
>NC_010296.1|WP_002739055.1|837257_837509_+|hypothetical-protein
MVIIEITNVEEILSAKIGSFAAKIVQALADDEGKVEEVLIKELQANFQERGIKANLFSVTGLDMLGNGRLEVNVNVRSANMMS
>NC_010296.1|WP_004163484.1|837601_838765_-|ferrochelatase
MGRVGVLLLNLGGPERLEDVRPFLFNLFSDPEIIRLPIKGLQKPLAWLISTLRASKSQENYRQIGGGSPLLKITEAQATALQQRLKEMGREVSVYIGMRYWNPFTEEAIERIKRDHIKKLVILPLYPQFSISTSGSSFRVLEEMWQQDPYLRLTEYTLIPSWYDHPTYLSAMADLIARELEQCPNPDQVHIFFSAHGVPQSYVEEAGDPYQRQIEECTRAIMRTLNRPNQYTLAYQSRVGPVEWLKPYTEDALKELGEQGIKHLLVVPISFVSEHIETLQEIDIEYREVAEEAGIEHFQRVPALNTHPMFIESLSQLVVKSLEEKPTTFEQITHPKANMKMYPQERWEWGMTTAAEVWNGRLAMIGFLAIIIELITGQGPLHFVGLL
>NC_010296.1|WP_041803792.1|838884_839508_+|class-I-SAM-dependent-methyltransferase
MATILRPLSYQYQWLYDGISRLAALAVGGETRFRQLALEGLKIAKNDPILDLCCGAGQTTRYLVPLSDRCTGLDVSPVALERASLAVPQAHYVEGLAEKMPFNAGEFAFVHTSAALHEMEPEQLEEILKEVYRVLRPGGIFALVDFHRPTNPLFWPSLALFLQLFETHTAWQFIDRDLIQSLQALGFRDCQQKLYAGGSLQVIQAAK
>NC_010296.1|WP_004163483.1|839607_840162_+|YqeG-family-HAD-IIIA-type-phosphatase
MTRAKILQPDLILGDTILGLSLEILSQHQIKGLILDVDDTLVPLQETTVSDDLQRWVDSLRLYLPIWLVSNNLSENRIGAIADNLQLPYLLGAVKPSRRKLRQAMAAMSLPPQQIAMVGDRLFTDVLAGNRLGMFTILVKPMVNPLTGGAAYPIHDFEVWISQILGVSLHPQHYLIKPDQSSQK
>NC_010296.1|WP_012264474.1|840414_841170_+|class-I-SAM-dependent-methyltransferase
MNRDSSLLSSSSVAEFKRNSFDLESHLQNFLQLDQEILQAKLAIAKDSLAALAHQEFSWTNPDYFYQEQVKENYLFELSAWHLSSQEYIGETLRLIDDHGSGKVLDFGGGIGTHALAAAMNSGVEQVIYCDLNPLHHEFVRFRAEQLNLDTNKLSFYTEIPERLKFDTIICLDVIEHLPSPTAQLKKFYDWLNPGGKLIINWYFFKGFNQEYPFHIDDPKIIESFFQTLQKDFLEIFHPYHITVRCYRKNQ
>NC_010296.1|WP_004163481.1|841228_842017_+|ECF-transporter-S-component
MTLDIIPEGEERKVEAVSSAAIDGAPIAYIVVLAAIVTTLSFIPFSIVLASGGSMPLSQAVFPLLGWLLGPIAGAIASGIGSLIGAFLAPYTAGIPAISVFGAIIASFVAGTMVLGKKRRYWWLGLTLIFLIPLFIYANRAIGLNGISPRIFIAGAFVDWSALVLFILPTRTLFTHWIKGSNLALVAAGIFGGTWTASGLSHLGVVAITYSIFNWPEEVWIALIPIIPVENLIRSFVGMVIGCGVIAGLRAIGLVKSREAIY
>NC_010296.1|WP_004163480.1|842141_843134_-|ketol-acid-reductoisomerase
MARMYYDEDANLDLLAGKTIAIIGYGSQGHAHALNLKDSGVNVIVGLYPGSKSAIKAKEAGIPVYDVAEAAKIADWIMILLPDEVQKTIYLNEIAPNLSAGKVLSFAHGFNIHFGQVVPPANVDVVMVAPKGPGHLVRRTYEQGQGVPCLFAVYQDATGQARDRAMAYAKGIGGTRAGVLETTFREETETDLFGEQAVLCGGLSALIKAGFETLVEAGYQPELAYFECLHEVKLIVDLIVEGGLAKMRDSISNTAEYGDYTRGPRVVTEATKAEMRKILGEIQSGQFAREFVLENQAGKPGFTAMRRQEAEHSIEEVGQDLRAMMSWLKR
>NC_010296.1|WP_012264475.1|843645_844761_+|type-IV-pilus-assembly-protein-PilM
MVSFFKKLLTKKPQGVGLEITPERINIAQIAKQGQNYKLVKCCSSDIPEGIFEEGKIVDSPALAELIQEVLKENKINSKRVATAVPMRESIIRIIPIPSELDDQELRNLVLNHEASLYLPYPREEVDLDYQKLGYFQDEDGIEKVQVLLVATRREITDAYMETFQQAGLQVDVLEINSFALIRTIREHLRQFSSNEAAVIVDIEFDNTEIAIVVDGVPQFSRTVPIGTFQLQNALSRAMNLPTSRSPEILLGMTIPITAFDSLSSNTGTSGAPTNAGMTALMRVLGELTDELRRSINFYLNQSDELEIVQLLLAGPGGGLAQLDEYFTQRLSVPTMAIDPITSLNLDTTQEIPNTERPGLGTVLGLGLREV
>NC_010296.1|WP_004163474.1|844770_845541_+|PilN-domain-containing-protein
MYSLDVNFLKDRHLNQTGKGTPAAKISTGINLRKQTPLLIGVGVGAGLLTLTGLLGLILGVQTSETQAKIQQLDAELGQLQAQSKKLEDLRAQLTAVEGENQSLVTVFNQIRPWSAILQEIRQQTPPSVQLTSVQQVEVPAAPDQGQPNPATQLKISGFASSYEAVNDYLLTLQASPFLQGKKTAIESAALADLPVQVDNKYKNINVTFPQAVQFVITAQLSDTPATQQLLNLTRNGALGVVTRINTLKRQGAIQP
>NC_010296.1|WP_004163472.1|845537_846329_+|hypothetical-protein
MTFTEEFEDRELEEFDEYPIAFGITFTPRNSGIAAAVLGLLGSFYLLFNWVMPAYNTLQQLQNDAAGKQQQVDQQKSGLGAAEFPKIESQLQQEKAIKQQILSLFAKEKDLSTILLDISNIFKSRNVKLISFQPQGLEPVVVSDGSLGSAVNNKLKRQTLNVKIEGNYANTQEVIRDLERLQPLILLNSLNTQMEKEGSAVKVVSTGNNKATIVPQGDKPVTTTFILNVIIPLSAEELAKLAPPPPAEGQPPAEGQPPASPPQ

Crispr_ID: NC_010296_7

• CRISPR_ID: NC_010296_7
• CRISPR_location: 1085282-1085367
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_7

Consensus_repeat	Method
GATCGAACCATACCAAGCAACGAAGAACC	CRISPRCasFinder

spacers of NC_010296_7

>7.1|1085311|28|NC_010296|CRISPRCasFinder
ATAAGGATTTAGCCGATTTCTGCCCCCT

CRISPR arrays and Neighbor proteins around NC_010296_7

CRISPR arrays

The CRISPR arrays of NC_010296_7

>merge|NC_010296|7|1085282-1085367|CRISPRCasFinder
GATCGAACCATACCAAGCAACGAAGAACCATAAGGATTTAGCCGATTTCTGCCCCCTGATCGAACCATACCAAGTAACGAAGAACC

>NC_010296|7|5|1085282-1085367|CRISPRCasFinder
GATCGAACCATACCAAGCAACGAAGAACC	ATAAGGATTTAGCCGATTTCTGCCCCCT
GATCGAACCATACCAAGTAACGAAGAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_004163337.1|1077499_1078534_-|cobalamin-biosynthesis-protein-CobW	unknown	unknown	gnl|CDD|274151
NC_010296.1|WP_012264678.1|1083453_1085133_+|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl|CDD|223733
NC_010296.1|WP_002758488.1|1070895_1071342_-|response-regulator	unknown	unknown	gnl|CDD|381108
NC_010296.1|WP_002795576.1|1108970_1109582_+|calcium-binding-protein	unknown	unknown	gnl|CDD|380205
NC_010296.1|WP_002784873.1|1078737_1078926_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264683.1|1093935_1094118_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264674.1|1071280_1073587_-|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|226702
NC_010296.1|WP_002798473.1|1074779_1076831_-|M3-family-metallopeptidase	unknown	unknown	gnl|CDD|341051
NC_010296.1|WP_004163338.1|1073975_1074257_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl|CDD|225583
NC_010296.1|WP_173351105.1|1097822_1099445_+|hypothetical-protein	unknown	unknown	gnl|CDD|197594
NC_010296.1|WP_012264688.1|1102129_1103035_-|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl|CDD|182468
NC_010296.1|WP_012264687.1|1100885_1101941_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226361
NC_010296.1|WP_148204729.1|1103496_1106697_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|378942
NC_010296.1|WP_041804563.1|1079259_1081164_-|polysaccharide-biosynthesis-protein	unknown	unknown	gnl|CDD|224011
NC_010296.1|WP_002758926.1|1107288_1107549_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264692.1|1107673_1108708_-|Clr5-domain-containing-protein	unknown	unknown	gnl|CDD|373057
NC_010296.1|WP_002784870.1|1074253_1074478_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264691.1|1106891_1107302_-|PIN-domain-containing-protein	unknown	unknown	gnl|CDD|350263
NC_010296.1|WP_012264677.1|1081727_1083239_+|carotene-isomerase	unknown	unknown	gnl|CDD|131777
NC_010296.1|WP_012264686.1|1100081_1100762_-|hypothetical-protein	unknown	unknown	gnl|CDD|350170

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_004163337.1|1077499_1078534_-|cobalamin-biosynthesis-protein-CobW	gnl|CDD|274151	TIGR02475, Probable_cobalamine_biosynthesis_protein, cobalamin biosynthesis protein CobW. The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two Pfam models which identify the N- and C-terminal domains (pfam02492 and pfam07683). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.22033e-167
NC_010296.1|WP_012264687.1|1100885_1101941_+|ABC-transporter-ATP-binding-protein	gnl|CDD|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.92122e-147
NC_010296.1|WP_002758488.1|1070895_1071342_-|response-regulator	gnl|CDD|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.98297e-72
NC_010296.1|WP_002795576.1|1108970_1109582_+|calcium-binding-protein	gnl|CDD|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	3.5184e-24
NC_010296.1|WP_012264692.1|1107673_1108708_-|Clr5-domain-containing-protein	gnl|CDD|373057	pfam14420, Clr5, Clr5 domain. This domain is found at the N-terminus of the Clr5 protein which has been shown to be involved in silencing in fission yeast. This domain has been found to often be associated with proteins that contain ankyrin repeats and large regions of disordered sequence.	0.00534846
NC_010296.1|WP_012264674.1|1071280_1073587_-|GAF-domain-containing-protein	gnl|CDD|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	0
NC_010296.1|WP_002798473.1|1074779_1076831_-|M3-family-metallopeptidase	gnl|CDD|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NC_010296.1|WP_004163338.1|1073975_1074257_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl|CDD|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	7.12169e-23
NC_010296.1|WP_173351105.1|1097822_1099445_+|hypothetical-protein	gnl|CDD|197594	smart00237, Calx_beta, Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins).	2.37854e-13
NC_010296.1|WP_012264688.1|1102129_1103035_-|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl|CDD|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	3.30509e-138
NC_010296.1|WP_148204729.1|1103496_1106697_-|tetratricopeptide-repeat-protein	gnl|CDD|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	5.07788e-53
NC_010296.1|WP_012264686.1|1100081_1100762_-|hypothetical-protein	gnl|CDD|350170	cd17877, NP_MTAN-like, nucleoside phosphorylases similar to 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs), as well as futalosine nucleosidase and adenosylhopane nucleosidase. Bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.42206e-10
NC_010296.1|WP_012264691.1|1106891_1107302_-|PIN-domain-containing-protein	gnl|CDD|350263	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins. Mycobacterium tuberculosis VapC26 cleaves 23S rRNA in the Sarcin-Ricin Loop, it is inhibited by the cognate VapB26 antitoxin. This subfamily belongs to the VapC (virulence-associated protein C)-like nuclease family of the PIN domain-like superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.61177e-40
NC_010296.1|WP_012264678.1|1083453_1085133_+|AarF/ABC1/UbiB-kinase-family-protein	gnl|CDD|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	3.2414e-144
NC_010296.1|WP_041804563.1|1079259_1081164_-|polysaccharide-biosynthesis-protein	gnl|CDD|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NC_010296.1|WP_012264677.1|1081727_1083239_+|carotene-isomerase	gnl|CDD|131777	TIGR02730, Carotenoid_isomerase, carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0

Protein sequences

>NC_010296.1|WP_012264678.1|1083453_1085133_+|AarF/ABC1/UbiB-kinase-family-protein
MLTPFDSPKSLHWQQSLRAPIVRQLEIFGFTMQFLTFLLWDRLTGANRGKKRQRRAKWLVDRLINLGPTFIKIGQSLSTRADLIPLEYIEQLTQLQDRVTEFNSQEAIRVIETELGQTLDNLFASFSVSPLACASLGQVHRARLLGGEEVVIKVQRPNLEGLFNLDFEVLHRLTRWLNIFPVVKKYNLEAIYQEFFELLFQEIDYIHEGKNADRFRENFKNYPQVKVPLVYWQYTTRRVLTLEYVPGIKVDDRETLLANGINVDGIIQLGICSYLKQLLQDGFFQSDPHPGNMAVSQEGELIFYDFGTMFELKSVAKDQMIETFFAILRKDTETVLKTLMYMGLIEPVRELQPVRNIVQFLLDEFRDKPVDVRAFEQISDQVYLMFKQQPFRLPPQMTFIIKSVTTLDGIARSLDPQYNLLAASQPFVKSLAVSGGTTNTMLTLANQARTFLKQQWQKGNKNQRMIRQLEEKIERGNLVFQVKSRENERLLKRIYLGIKILINVCLLGFSLISAIFLLDSNYSKLAIIPFSLAGLFALFFLRSSMALLIQERLDKMLEK
>NC_010296.1|WP_012264677.1|1081727_1083239_+|carotene-isomerase
MSNQYDAIVIGSGIGGLVTATQLAAKGAKVLVLESYLIPGGSAGYFEREGYRFDVGASMIFGFGKKGTTNLLTKALAAVDMSIETIADPVQIHYHLPDGLDLKVHRDYEQFLQELISHFPAEKTGIRRFYDECWQVFNCLNSMDLLSLEEPRYLTRVFFQHPLSCLGLVKYLPQNAGDVARKYIKDPKLLKFIDMECYCWSVVPADRTPMINAGMVFSDRHYGGINYPRGGVGQIALKLVAGLEKAGGEIQYQARVNKIILDAGRAIGVRLTNGKEYYAKKIVSNATRWDTFEKLLPPESLPGSEKKWQKRYQKSPSFLSLHLGVKADVLPSGSECHHILLEDWENMEAEQGTIFVSIPTLLDPSLAPPDHHIIHAFTPSWIDQWQKLPPQEYQQKKEAAAHRLIERLKKLFPKLDTGLDYIEIGTARTHRRFLNRIDGSYGPIPRRKLLGLLGMPFNRTAIPNLYCVGDSTFPGQGLNAVAFSGFACSHRLAVDLGLPTRRD
>NC_010296.1|WP_041804563.1|1079259_1081164_-|polysaccharide-biosynthesis-protein
MYRKLANKILKLANSLSRSSKRSLLIITDGLIFCLSIYLAFSLRFNLSLEYQEIRPFLGEIFGLIAIKTLVFYLKGIYSPVVRYTGLEFLSSVLQAVLYSSGVLISLAYFQRDAFLPRSVLIIDALLTLVLVIGVRLLIRSVFHRLNIYISSVDREPTIVIYGAGIVGCQLARSLQNDPHYRLLAFVDDNPDLQQRVVQGIRVYPPSQLALLHQKRAFDWVVLAIPNVAKAKKRQIIESLETLPIVIKTVPPLSKILSGEAAINQIRSVDVSELLGREEILPHPELLAKNVTGKAVLVTGGGGSIGSELCRQIAFLKPKCLVIYELNEFSLYKIDLDLSENYSDLRKYAYLGNVLDRNHLARVIQQHQIETIYHTAAYKHVPLVEANASQGVYTNVWGSLNVAQTAIENSVSNLVLISTDKAVRPTNIMGASKRCAELVIQALAALPDTSTCCAIVRFGNVLDSSGSVVPRFREQIAQRKNITLTHRDIIRYFMSIPEAVRLVMQAGAMAKGGEVFLLDMGEPVRIYDLALQMIRLSGLELGQDIDIEITGLRPGEKLYEELLIDTDKARPTDHPKIFCANEHFLAWEKLQIKLEQLLNYIQVNDRQGLVKSLQDLVPEYRPPQPMASNLSSKK
>NC_010296.1|WP_002784873.1|1078737_1078926_+|hypothetical-protein
MLQRLFLAFTLAFPLYLSIAIQQTSPLADRVNRPSSRGINKIEQTVKTIQKQLKQEHSVQLD
>NC_010296.1|WP_004163337.1|1077499_1078534_-|cobalamin-biosynthesis-protein-CobW
MHKIPVTVITGFLGAGKTTLIRHLLQNNQGRRVAVMVNEFGEVGIDGDLLKSCQTCDDNPNDNIVELTNGCLCCTVQEEFLPTMQKLLERRQQLDCMLIETSGLALPKPLVQAFRWPEIRNGATVDGVITVVDGFAVARGRLVADLEALTAQRQADPNLEHETPIEELFEDQLACADLVLLTKTDLISEIELEKIISWLKTQLRSTVKIVTCADGQISPDVLLGFNAAVEDNLASRPSHHDHEEEHDHDEEINSVQFCLDSPVDARILTQRLKELVAREEIYRVKGFVNVANKPMRMVLQGVGDRFDSFFDRPWQSTEMRQTRLVFIGRSLDGQRIEQALTRVC
>NC_010296.1|WP_002798473.1|1074779_1076831_-|M3-family-metallopeptidase
MTNTSNPLLAGQGLPAFDQIQPGLIVPGMTQLLQELARELTDLEAQIAPTWEKLVEPLTRIEERLSWSWGIIGHLMGVKNSPELRQAYETVQPQVVEFISRLSQSKPIYEAFLSLRQGESWGQLDEAQQRIVEASLRDAQLAGVGLVGEKKDRFNAIQLELAEITTKFSNNILDATKAFQLKLTTPEDIAGLPPSLLSLAAQTARGQGETNASTETGPWVITLDFPSYFPFMKYSDNRELREKLYKAYVSRADLGELDNNPLIDRILQLRQEQAHLLGYSTYAEVSLARKMANSVDEIEKLLDNLRQVSYEAAKQDLEALKTFAGTDDLKHWDIAYWSEKQRQAKFNFSAEELRPYFPLPRVLEGIFSLAKRIFGVEIIAADGKAPIWHPDVRYFQINDEKGEKIAYFYLDAYSRPAEKRGGAWMDVCIGRAKTGAEVRLPVAYLICNQTPPVDGNPSLMTFEEVTTLFHEFGHGLQHMLTTVDYSGAAGINNVEWDAVELPSQFMENWCYDRPTLMSMAKHYETGETLPEHYYQKLLLAKNYMSGSAMLRQLHLSLVDLELHHRYQPNGGETPKQVRQRLAATTTIIPPLPEDAFLCSFGHIFAGGYAAGYYSYKWAEVLSADAFAAFEEVGLDNEEAVKAIGRRFRDTVLAMGGSSHPMNVFKAFRGREPSTEPLLRHSGL
>NC_010296.1|WP_002784870.1|1074253_1074478_-|hypothetical-protein
MSIAFFQDIIESVESLSIEDQDYLFELIRKRRIEKRREEMAKNGEETLKSLAMGTAKKGSAEEIMAYLLEDEEE
>NC_010296.1|WP_004163338.1|1073975_1074257_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MKLVADKSFKRAFQRLISKNPQLQSKVSEVLHLLEDNPFTPSLKSHKLTGRLEGYWSCSVSYDCRIIFTFRQDTDSGETLIVIVDIGKHDQVY
>NC_010296.1|WP_012264674.1|1071280_1073587_-|GAF-domain-containing-protein
MEVLTETINPTSIEREPIHLYNRIQPHGVLLVLSEPELKVSQTSSNSRSLLGISPGEIIGKTLEEIFDPFQIDPLKSAIENNDFDAINPSKIWARVKGDDFAVFDAIFHRNAEQMLILELEPAISYENIPFLRFYHLAKTSIDKLEATRSLKDFCNIIVKEVRKMTGFDRVMLYKFDEEDNGDVIAEDKIEQLEPYLGLRYPASDIPLPARNLLSANWIRQIPDATSEPVDLVPSLHPETQQPLNLTLSSLRSASPCHLEYLHNMGVGASLTISLIENKRLWGIIACHHRTPKYVPYELRKACEFLGRVIFSEISAREETEDYDYRVKLNFVQSQLIDYMAEANNFIDGLIAHKPNLLDLTKATGAAICLGGNYTLIGVTPSEEELNYLITWLEKNVHEDVYYTNSLPRIYADAGKFKDIASGLLAIPISKRNYLLWFRPEVIQTVNWGGDPGKAMETTAIDGDIRLCPRKSFSLWKETVRLKSLPWKAVEINAALELRKAIVNIILKQADELARLARDLELSNAELKKFAYVASHDLQEPLNQVANYVQLLEMRYTEELDEDAKEFITFAVEGVSLMQTLIDDVLAYSKVDMQAVEFNTIDANLALEKALANLKGRIQESQAIITVDPLPIVMADKTQLMQLFQNLIGNAIKFRGKATPTIHIAAQRQEEEWLFSVTDNGIGIDPRFSERIFVIFQRLHTRDEYPGTGMGLAICKKIIECHRGRIWVESQLGKGAVFCFTIPLGGDERERWRGRATQNYLISGGQQS
>NC_010296.1|WP_002758488.1|1070895_1071342_-|response-regulator
MSAGEDVPHKIILLVEDSKADIRLIQEALKTSTVPHELVIVRDGVNAMDYLRREGEYLDSPRPNLILLDLNLPRKDGREVLAEIKNDPSLKRIPVVVLTTSRNEEDIFYSYELHVNCYITKSRNLNDLFKIVKNIEAFWLETATLPGE
>NC_010296.1|WP_012264683.1|1093935_1094118_+|hypothetical-protein
MWGVGCGVWGFIDFQVVKYLIFREKVQEFSPRSPQWLALFEGKKVQKSYPTRFLDLFSRP
>NC_010296.1|WP_173351105.1|1097822_1099445_+|hypothetical-protein
MSDVGGFNSLSNVTLTFDPTATSFLLDEGLITSGSYKATDFLTGDIFNAPAPGGPYGTDFSVFNGINPNGTWSLYVVDDAGGDVGTIAGGWSLDIGTATTLPVVTVAATDADAGEPTNNGQYTLTRTGDTTSALTVNIAMSGTATNGTDYTTISTPVNFAAGSATALVDLNVIDDTLVEGTETAILTVLAGTGYTVGSAASATVNIADNDLPDLPIIDLSANQTVVEGITSPQNVTYTVTLSSDSTDTITVQYATGDNTAIAGSDYTTTKGTLTFAPGVTSQDIIIPILNDSLNEAQETFNLTLSSPTNAQLGTAAVTTTITDTLVTAASTTLAANVENLTLTGTAAINGTGNNGNNVIIGNSANNTLTGLAGNDTLNGGAGNDNLISGDGNDLLLGGAGNDTLNGGLGVDTLTGGVGNDFFRLDNVANGDLITGFSVADDTIILANSLDSTLTGPINPGIKGLLFISGNVNGSVLSAAGFFKGAGINGGASGNSSGIYVNTSNGDIWYNDSTVAGSYLIANVGAGAAAGMTNLDFVYGV
>NC_010296.1|WP_012264686.1|1100081_1100762_-|hypothetical-protein
MLTPEDIILVPRGAEHSSIRRGLRNIGDLAPQIIPINLGAPEFLDSSPVSKLSLEFLNKFRGKIVLMGLAGSLSDRYRVGDGVIYQGCGAEKGNYWQCEPEITAEIAQLTGYSLVKGLTSDRLISRSEEKRRLGQGGYEVVDMEGARILAALRGQKVAIVRVISDEVTQDLPDLAPAIDNQGQLRPLPLARQMLIRPIPAFHLIQGSLKGLSVLTQVVRKLCGSNF
>NC_010296.1|WP_012264687.1|1100885_1101941_+|ABC-transporter-ATP-binding-protein
MKKSVILRLSEVNKRFPAAATLAVDNISFSLTEGEILGLLGPSGCGKTTLLRMIAGFEKPSQGVIELGGRIVADEKTFIPPEKRNTGMVFQDYALFPHLTIADNIAFGLKNSGEKLSTKAINARVAETLDLVGLQGLEKRYPHQLSGGQQQRVALARALAPKPSLILLDEPLSNLDVQVRQRLRHEIRHILKATGISAIFVTHDREEAMVISDTIAVICQGKLEQINNPEEIYSHPASRFVAEFVTQANFLPARRKGEQWQTEIGVWEIPDGQDLDKGELMLREEDVKIKPDETGELVICDRQFLGREYRYCLLTATGSQIHARTTINTQLDIGTKVKLSIIPDSVRVFAD
>NC_010296.1|WP_012264688.1|1102129_1103035_-|30S-ribosomal-protein-S6--L-glutamate-ligase
MKIAILSQDASLYSTKRLKEAGEAQGHEVRVINYLRCYMNITSHKPTVVYNGKPLESFDAIIPRIAASKTFYGTAVVRQFEVMNVFTANDSQAISRSRDKLRCLQILAREGIGLPVTGIAHATQDIDGLIETVGGTPLVIKLLEGTQGIGVVLAETDQAAKSVIEAFRQLEANILVQEYIKEASGADLRCFVIDGKVVASMKRQGAEGDFRSNLHRGGKAEKVKLTPEERSTAIRATKAMGLRVAGVDLLRSNHGPVVIEVNSSPGLEGIEAATGVDVAKKIIDFVAKNATLVLNRDRYQY
>NC_010296.1|WP_148204729.1|1103496_1106697_-|tetratricopeptide-repeat-protein
MLYQQGQYEQGIIFAQKTCDLAKSYSLTNEPIYAYSLNLLAILYKSMGRYEQALPLSQQVLEIVGKSLGTDHPEYANCLNNLALLYESMGQYEQALPLHQQALEISGKILGTEHHDYAGSLNNLAGLYKSMGQYEQALPLHQQALKIIGKSLGTDHPDYATCLNNLSVLHKSMGQYEQALPLSLQALEIRSKSLGTDHPNYASSLNNLAVLYGSMGQYEQALPLYQQALAIRGKSLGTNHPDYADSLNNLAVLYGSMGQYEQALPLYQQALAIRGKSLGTDHPDYADSLNNLAVLYQSMGQYEQALPLSLQALEIRSKILGTDHPDYAGSLNNLGGLYRSMGQYEQALPLSLQALEIRGKSLGTDHPGYATSLNNLAALYRSMGRYEQALPLFQQALEIHGKSLGTDHPNYALFLNNLALLYTATNRPEEALKLMQEAADIDLKTISTIFSISTDKQRINYLAKNYHIVETFLSLVFQHFPNSPEAVQSAYNLILRRKAIATETAIQQKIALLSQQYAHLAPKLQQWQQIRQQLAKRCFDIPTPEQLPYYQQEIKSLEQQAENLERELNIPELNLEKELQNADFRTIALELPEGTTLIEFIRFNNYNFQAIPANGDAASFPPRYLAFILPAQAPEQLTMIDLGEAEPIDKLVKEFRESVENPRGLSVAVFKKKEDISPKIELSQLIFQKIKPYLSQELIICPDGELNCLPFEILPTDKGSYLMDEYRCNFLNVGRDILRFKAKIPAKVTYPLVIANPDYNLASPENTPSTAENEEKFPFKPSLRNLATSRQGQIFNSLPGTEIEGEKIAKILRVKPVTAAKALKPLVSKAQKAPYILHIATHGYFLGDITPELDTINQNFMLSSLSASERFQVGTRQNPLLRSGLAFAGVNTMLNGGKLPEEAEDGLLTSLDVQSINLAGTELVVTSACETALGDLYTGETLIGLRRSFIQAGAKTVIISLWKVEDVATTILMQYFYYYLLKAKLSKAEALRKAKSSLQRLTIAKMRSQWLTEDAIKSAEKHSIGTATHLRELSQKSDLERPYEAPKYWAAFICLGNPAGLPLLPF
>NC_010296.1|WP_012264691.1|1106891_1107302_-|PIN-domain-containing-protein
MIIADTGFFLALGNRKDKDHSLAIQTIYSQNEALITTYPVITETCYLLLARIGNQAQINFLQGLVNDNFEIFHLQNHHIERMIELMDRYANLPMDMADASLIVLAEHLGHGRILTVDRRDFSIYRWNNTEVFNNLL
>NC_010296.1|WP_002758926.1|1107288_1107549_-|hypothetical-protein
MQISIQLDDEHAQKLAYIQQTTQENTLETIQQAIELRYQQLQEKTHDPLAKLKQSSFIGSFEAEADFAENSENILHSLLSEKNDHC
>NC_010296.1|WP_012264692.1|1107673_1108708_-|Clr5-domain-containing-protein
MVGIPDTIGTKDKDLLQKAFLNQILQSTGLIKNQDHSCLFQLLYNPKNQDKKRSEIVEIMKNKHNLHYTEATIHEYAKRIRRIMVDVFKQAMIDDGLELSVNLITTKYEKKGKPQNSIEPHQVTYQWLWEKKFPRMGWELAKEVAAPACNKLTMLDINENFEVEKSPNGGASNGSSKRGLVMNGTVIKPEPDKGNYIYLNKPHYLWVNLPENGKYLLLINETVEGNFYLFSPSRAFAYIPYTKLSEGLRLPPSEGLARFFQYDAVGDEYFLAIVTEQPIDLSWVNGESDPTDIILSQERLEEIFVKLGQQGNSEVFYKRFKVVEKPINHSDQSATIISNKNLVY
>NC_010296.1|WP_002795576.1|1108970_1109582_+|calcium-binding-protein
MPVYNGTIYNDFLFGSFGNDTMYGNEGNDSIYGQGGNDYIDGGIGNDYIDGGDGADIIFGRAGNDNVFGGNGSDLLIGEAGADTLSGGNDTDYLFGGADNDVLLGGAGNDFVYGGYGNDILTGGTGADAFFFGSLLEGVDVIKDFQWIEGDVIQLSKSGFNASSLSQFNYNSLTGGLSFLGQQFATIENRPAGFAVSLDVQLI

Crispr_ID: NC_010296_8

• CRISPR_ID: NC_010296_8
• CRISPR_location: 1394867-1394970
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_8

Consensus_repeat	Method
AGTTTTATTGTCTAGGGGTGTCTCTGGTTGAG	CRISPRCasFinder

spacers of NC_010296_8

>8.1|1394899|40|NC_010296|CRISPRCasFinder
CAGATTTAGATGCAATCATCCAATCTGATGGAGAAGAAGG

CRISPR arrays and Neighbor proteins around NC_010296_8

CRISPR arrays

The CRISPR arrays of NC_010296_8

>merge|NC_010296|8|1394867-1394970|CRISPRCasFinder
AGTTTTATTGTCTAGGGGTGTCTCTGGTTGAGCAGATTTAGATGCAATCATCCAATCTGATGGAGAAGAAGGAGTTTTATTGTCTAGGGGTGTCTCTGGTTGAG

>NC_010296|8|6|1394867-1394970|CRISPRCasFinder
AGTTTTATTGTCTAGGGGTGTCTCTGGTTGAG	CAGATTTAGATGCAATCATCCAATCTGATGGAGAAGAAGG
AGTTTTATTGTCTAGGGGTGTCTCTGGTTGAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041803893.1|1389030_1389813_+|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl|CDD|371375
NC_010296.1|WP_125730803.1|1391285_1392463_-|IS630-like-element-ISMae25-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_012264924.1|1398912_1399536_+|hypothetical-protein	unknown	unknown	gnl|CDD|372967
NC_010296.1|WP_041803896.1|1401757_1402357_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041803897.1|1402405_1403620_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002798683.1|1404208_1404712_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264913.1|1384014_1385478_-|amidophosphoribosyltransferase	unknown	unknown	gnl|CDD|235998
NC_010296.1|WP_002735229.1|1397139_1397376_+|NifU-family-protein	unknown	unknown	gnl|CDD|376458
NC_010296.1|WP_012264918.1|1390783_1391044_-|CopG-family-transcriptional-regulator	unknown	unknown	gnl|CDD|274227
NC_010296.1|WP_012264926.1|1400531_1401737_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|379142
NC_010296.1|WP_012264916.1|1390024_1390378_-|XRE-family-transcriptional-regulator	unknown	unknown	gnl|CDD|372700
NC_010296.1|WP_002783499.1|1388625_1388811_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002735918.1|1405002_1405317_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264925.1|1399573_1400503_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|379142
NC_010296.1|WP_012264923.1|1397663_1398752_+|isocitrate-dehydrogenase	unknown	unknown	gnl|CDD|333905
NC_010296.1|WP_002798675.1|1396191_1396839_+|DUF3386-domain-containing-protein	unknown	unknown	gnl|CDD|371771
NC_010296.1|WP_012264914.1|1385745_1388016_-|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl|CDD|234921
NC_010296.1|WP_012264917.1|1390481_1390781_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|226194
NC_010296.1|WP_002783495.1|1388104_1388305_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|224514
NC_010296.1|WP_002783497.1|1388301_1388508_+|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl|CDD|377942

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_041803893.1|1389030_1389813_+|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl|CDD|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	2.34881e-99
NC_010296.1|WP_125730803.1|1391285_1392463_-|IS630-like-element-ISMae25-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.3303e-19
NC_010296.1|WP_012264924.1|1398912_1399536_+|hypothetical-protein	gnl|CDD|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	2.00315e-45
NC_010296.1|WP_012264913.1|1384014_1385478_-|amidophosphoribosyltransferase	gnl|CDD|235998	PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.	0
NC_010296.1|WP_002735229.1|1397139_1397376_+|NifU-family-protein	gnl|CDD|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	1.64804e-34
NC_010296.1|WP_012264918.1|1390783_1391044_-|CopG-family-transcriptional-regulator	gnl|CDD|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	0.000424999
NC_010296.1|WP_012264926.1|1400531_1401737_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	5.4382e-20
NC_010296.1|WP_012264916.1|1390024_1390378_-|XRE-family-transcriptional-regulator	gnl|CDD|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	1.16296e-27
NC_010296.1|WP_012264925.1|1399573_1400503_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.18005e-21
NC_010296.1|WP_012264923.1|1397663_1398752_+|isocitrate-dehydrogenase	gnl|CDD|333905	pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.	3.19068e-46
NC_010296.1|WP_002798675.1|1396191_1396839_+|DUF3386-domain-containing-protein	gnl|CDD|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	7.14895e-123
NC_010296.1|WP_012264914.1|1385745_1388016_-|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl|CDD|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_010296.1|WP_012264917.1|1390481_1390781_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	8.40386e-16
NC_010296.1|WP_002783495.1|1388104_1388305_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	1.90381e-10
NC_010296.1|WP_002783497.1|1388301_1388508_+|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl|CDD|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	2.63271e-21

Protein sequences

>NC_010296.1|WP_125730803.1|1391285_1392463_-|IS630-like-element-ISMae25-family-transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTPKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>NC_010296.1|WP_012264918.1|1390783_1391044_-|CopG-family-transcriptional-regulator
MNIQLKPNQEQFIQKQLKSGRFNNSEQVIDTAFYLLEILGQDYLQWVEETRQKIDVAIAELDNGEGLDGEKVINDILEKFKKAQQK
>NC_010296.1|WP_012264917.1|1390481_1390781_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNRYIIAPSANQDLNKIADYFLVVNIEAGEKLFRKFYKKCQQLVQFPKLGRSYSHIKPSLRGLPLDGYIIFYRVINETVEILRIVNGRQDLDALFSEIK
>NC_010296.1|WP_012264916.1|1390024_1390378_-|XRE-family-transcriptional-regulator
MTEYTIISGNIFEDLGFANAEEKLAKVKLASVIYDLITEQELSQQEVSQILGIDEAKISNLKNGRLQKFSLEQMFDFLVALGQKIEILVTPQALANSSLSIQVMYDSATPTQLVSLL
>NC_010296.1|WP_041803893.1|1389030_1389813_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKTDSIFYQLLQRFPACFFDLLNLPPETANSYQFSSVEVKQLSFRLDGVFLPDTPNQPIYFLEVQFQKDNRFYSRFFSEIFLYLHQTDLSNNWQGVVIYPRRSVESVETARYGELINSGRILRFYLEELREVESLGISMLQLIIAPTARAIEQGKQLIPRIRQEFPKVKQQQELLELIETILVYKLPQVSRKEIEAMFSLSDLKQTKVYQEALEEGRQEGELAAKLASIPRLLALGLNFEQIAQALELEIEQVRQATQGE
>NC_010296.1|WP_002783499.1|1388625_1388811_+|hypothetical-protein
MDALIQELEIKLRQWQPATVEQVGRYLVEIIELADQDALELLRSRLVEQEVLDIIEEPETR
>NC_010296.1|WP_002783497.1|1388301_1388508_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MKSISGKKLCKVLEKLGWILVRIKGSHYIYTRQNTTTIIVVPIHGNRDLPIGTLKGILKDAGLNEDDI
>NC_010296.1|WP_002783495.1|1388104_1388305_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MNIKVIVWQEDDLWCATVPAFPGCHTWGESYEHLMAMVKEAVEGWLEVANEQELPNPEQKLVEISL
>NC_010296.1|WP_012264914.1|1385745_1388016_-|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MTTPFTAAEIASEGIKPEEYEEIVKRLGRHPNKAELGMFGVMWSEHCCYKNSRPLLKQFPTTGEKILVGPGENAGVVDLGDGLRLAFKIESHNHPSAVEPFQGAATGVGGILRDIFTMGARPIAILNSLRFGNLQDARNRRIFAGVVEGISHYGNSVGVPTVGGEIYFDNAYNGNPLVNAMALGLMETEEIVKSGAKGLGNPVLYVGSTTGRDGMGGASFASAELTDKSMDDRPAVQVGDPFLEKSLIEACLEAFKTGAVVAAQDMGAAGITCSTSEMAAKGGVGIELDLDKIPVRETGMVPYEYLLSESQERMLFVAASGREGELIEIFHRWGLQAVVAGRVIAEPIVRILFKGEIAAEIPAAALADNTPIYHRELLTEPPEYAQKAQLWQDSTIPIPESYNEILLKLLDSPSIASKRWVYRQYDHQVQNNTVILPGGADAAVIRVRPLGANPANSRRGVAATTDCNPRYVYLDPYNGAKLAVAEAARNLSCVGADPIAVTDNLNFGSPENSIGYWQLATACQGIAEACREMNTPVTGGNVSLYNETVDAAGSPQSIYPTPVIGMVGLVPDIGQICGQGWQKAGDLIYLLGFSLPTIGASEYLAVIHGLVTGKPPVIDFELERKVQAACRWGIRAGWVKSAHDCAEGGLATALAECCISGQLGAEIDLSWQHQGRFDAVLFGELASCIIVSVSSENRQDWEEYLKTQLGDYWQITGKVSEKSENLRIFDRDKQPAIDVSLETIQQVWSKAIERRL
>NC_010296.1|WP_012264913.1|1384014_1385478_-|amidophosphoribosyltransferase
MSSHPDSSLFLNRVDKPEEACGVFGLYAPEEEVAKLTYFGLYALQHRGQESAGIATYDGETVHCYKEMGLVSQVFSETVLKTLPGTHAVGHTRYSTTGSSRRANAQPAVIETRLGKLSLAHNGNLVNTFELRNVLEKRGCDLVTTTDSEMIAVAIGQEVDSGKDWIEAAIDAFSYCSGAYSLVIGTPTGIIGARDPNGVRPLVIGVLQEEGNPSRYVLASETCGLDIIGADYLRDVQPGELVWISEDGLSSVDWAIKPEKKLCVFEMIYFARPDSIVHEESLYTYRVRLGEQLAKESPVEADMVMGVPDSGIPAAIGFSRISDIPYAEGLIKNRYVGRTFIQPTQHMRESGIKMKLNPLKDVLQGKRVIIVDDSIVRGTTSRKLVKALRDAGAREVHMRISSPPVTHPCFYGIDTDNQEQLIAATKSVAQIQAQIGVDSLAYLSHDGMLTATKEDPKTFCTACFNGDYPIPVPDNVKRSKLILETVK
>NC_010296.1|WP_002798675.1|1396191_1396839_+|DUF3386-domain-containing-protein
MTVATTNARDIFRSAYENRYTWDERFPGYTADIILTQGEEVHTGKIQVNADYSVEVTGIDDEKVQESIYNQMRDIVTHRKRGNFDASHGKNQFNFGQDDPTGAVEILVTGDAMGSNYKVRGQEICQVSRVMGPMAFTINTEESLDTGEGYISIRYNAIFRNAKTDELKGKRDFKETYEKIGNYYLPSCQVINAIDAGGEKSTTEFTFINLQLLES
>NC_010296.1|WP_002735229.1|1397139_1397376_+|NifU-family-protein
MSLTLTPNNVEQVLDEMRPYLMADGGNVELVEIDGPVVKLRLQGACGSCPSSTMTLKMGIERRLREVIPEIAEVEQAF
>NC_010296.1|WP_012264923.1|1397663_1398752_+|isocitrate-dehydrogenase
MTENIPTIVVMHGDQTGEELLLEALRVLQPSIIRQPLNFADFDLSLAQRRQSNNQVVHEAAEATLKTGLALKAATITPEIKGDVGSPNAILREAMNSQVILRIGRRIPGIRPIGGVYSPIAIVRMAVDDAYGAKEWRETTATGDEIAYRTSRISRATSRAVAEFTFQQAKKTGARVFGGPKFTVSATYEGMFKEELDAAAQRHPEVRYQPLLIDATFALLLQTDGEALVIPALNRDGDLLSDFVLQLYGSIAGAESLVLGFDEETLAVKTIMAEAPHGTAPALEGKNIANPMAMILAAAALLGYIETNEARKASRAIYESVFETIHEGKKTPDLGGQMTMSEFTDEVIRRVVSKLEVWSALG
>NC_010296.1|WP_012264924.1|1398912_1399536_+|hypothetical-protein
MKLQTLTKTLTIALIGVGPALTLQSPSQAQARFECLLPVTGRYVGVPTTYAKVGSNERKPVIRWVSRYSSGSGYTPQQRCLEVTKRFNTLDARPRGIDIITTGYLNGLPVIYSPSHGRERANSSNLLFTLKRGEDATQKIQLLFDLRAGHYTEPLFESSSDSVIVYFNKFLENAPVETNLATGSSPSPLPETSPEQPPQKPSGGSVW
>NC_010296.1|WP_012264925.1|1399573_1400503_+|trypsin-like-peptidase-domain-containing-protein
MSRPIKRILAGAGSLLLGLSTPLLAVQSYAPALEPNQANAYSSQQLSEQQLRQLARAITVKVLSGQGWGSGILVEKQGASYKVLTNDHVLGRYRYRGWQIQTPDGKIHRGELVRTVRLNDYDLGLVSFRSSQVYSIADLANVDDLAIGDEVFAAGFPFDGDRPTEQGFTFTLGKVSLLSDKSFSGGYQIGYTNKIKNGMSGGPLLNRQGKVIGINGIHAYPLWGKSYVFADGTVTSPALWEQMSRLSWAIPIGTFLQSGSSSPSASSRQRPAVSPPPLPTHRETTFSEDFPSPSSSTPREKNPAPTPLW
>NC_010296.1|WP_012264926.1|1400531_1401737_+|trypsin-like-peptidase-domain-containing-protein
MSNNFLKISAALVSIAVFVVSPQIAKASTTEQIEKIAEKITVLIPSEEEGANGKITANGSGSIIAKEGKVYTVLTASHVICKDARDACKFYYDQLKIITWDGKQYPLDYNSIKKLPGVDLALVQFQSDQNYQLATLANYQVADEQFIFASGWPDPKFIGKRKRLFNVGKVLPKYITPLLKIFPPELGYEIVYTSVTYGGMSGGPVLDINGRVIAVHGQNEAEKIEKVPVPIGFSLAIPITTFLKLAPQSGIQGQINVENSPPNALSLQEIGDELYKAFEVPNNNDTNPLNWLNQGNKMWRLGQLALAYAAYEKALQLDAQLYQAWYGKGLVLTYWKRSQEALAAYEQALKINPDSDTAKKLRDKLQESLGGRNTPSLTPSQPTTAPTVEPSPQPSNPRRLW
>NC_010296.1|WP_041803896.1|1401757_1402357_-|hypothetical-protein
MLMKWLTNWQVSLVAAVLLTNALVSPAMAQTGNQSDATGPILSTGDFAGQTFPSTTTVTGFQGGEPAQIAVNQAAASLNILLADNNLTSPTGTPIPAAVQQSLLSILTGDAQAGNNINAVIAALYSAPGTAPLNVIEDLLASLEKLTKDKKVVPAKLLAAVRAYNAMILASNEEFLRNPPAELRAIQAFLAKLVQPTIS
>NC_010296.1|WP_041803897.1|1402405_1403620_-|hypothetical-protein
MLLKKAKRNSQMRQIFSGGIFITSCVGTAILCDGMKALPSPLDIDAASIRVSREKIILNSPVELERTDRILTTNSFSTTEGLADSNLPSSLENKLGKSSLDTLATEKTGTISTLEEWKANLGTMQASQLFPAGGNNSPEVEKWQAQASTPVDTNVSPELQRLRQDFLIEEPKTLSAKLAEFVVAPSGSISTPIGFGANFGQIFGGFAFQSRTRFTNQADGGLALGVGLGERQKIVGLDVTLAILSLFGDNAGRGSFSFKIHRSLPEGFAVALGFENAIRWGGTDAGSSIYGVVSKFFQFTETTKEPFSQLTLSLGVGGGRFRSEGAIEDGVNSLGVFASAGLRIVEPVSAIVEWSGQDLNAGISLIPFPKVPLTVNLAGADLTGNAGDGARFVMSIGYNYFFPR
>NC_010296.1|WP_002798683.1|1404208_1404712_-|hypothetical-protein
MKTFVERYWSWFNWTTLAMVVLGFWLSASFVIDLIIIPSLSVAGMMTQNGFASAGYLLFGIFNHLELVCAAIVLCSFVVFHRYHTLIHLPEHRSLLFAGVLLVITLIYTYFLTPNLSAMGLLAPVTASGMSGEMMSLQIGYWFLEVVKGLIAFTLLRWCWRDAFKLA
>NC_010296.1|WP_002735918.1|1405002_1405317_+|hypothetical-protein
MDKDFRNYRMVCTLTFGDIYGQIIVWLIVIFLTLASTLALWSSTRQIFALATVGLVVVLSLPFLLFAFVTTLLNHIEFVPIEAETNIRRGPVPGVSGSRVPAAS

Crispr_ID: NC_010296_9

• CRISPR_ID: NC_010296_9
• CRISPR_location: 1396906-1397012
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_9

Consensus_repeat	Method
GATCCCCCCGCCTATCGGCACCCCCCTTATCAAGGG	CRISPRCasFinder

spacers of NC_010296_9

>9.1|1396942|35|NC_010296|CRISPRCasFinder
GGGCAGGGGGGATCAAACCCCCCTTATCAAGGGTA

CRISPR arrays and Neighbor proteins around NC_010296_9

CRISPR arrays

The CRISPR arrays of NC_010296_9

>merge|NC_010296|9|1396906-1397012|CRISPRCasFinder
GATCCCCCCGCCTATCGGCACCCCCCTTATCAAGGGGGGCAGGGGGGATCAAACCCCCCTTATCAAGGGTAGATCCCCCCGCCTATCGGCACCCCCCTTATCAAGGG

>NC_010296|9|7|1396906-1397012|CRISPRCasFinder
GATCCCCCCGCCTATCGGCACCCCCCTTATCAAGGG	GGGCAGGGGGGATCAAACCCCCCTTATCAAGGGTA
GATCCCCCCGCCTATCGGCACCCCCCTTATCAAGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041803893.1|1389030_1389813_+|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl|CDD|371375
NC_010296.1|WP_125730803.1|1391285_1392463_-|IS630-like-element-ISMae25-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_012264924.1|1398912_1399536_+|hypothetical-protein	unknown	unknown	gnl|CDD|372967
NC_010296.1|WP_041803896.1|1401757_1402357_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041803897.1|1402405_1403620_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002798683.1|1404208_1404712_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264930.1|1405345_1405519_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002735229.1|1397139_1397376_+|NifU-family-protein	unknown	unknown	gnl|CDD|376458
NC_010296.1|WP_012264923.1|1397663_1398752_+|isocitrate-dehydrogenase	unknown	unknown	gnl|CDD|333905
NC_010296.1|WP_012264918.1|1390783_1391044_-|CopG-family-transcriptional-regulator	unknown	unknown	gnl|CDD|274227
NC_010296.1|WP_012264926.1|1400531_1401737_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|379142
NC_010296.1|WP_012264916.1|1390024_1390378_-|XRE-family-transcriptional-regulator	unknown	unknown	gnl|CDD|372700
NC_010296.1|WP_002783499.1|1388625_1388811_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002735918.1|1405002_1405317_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264925.1|1399573_1400503_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|379142
NC_010296.1|WP_012264921.1|1394158_1396009_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl|CDD|224182
NC_010296.1|WP_002798675.1|1396191_1396839_+|DUF3386-domain-containing-protein	unknown	unknown	gnl|CDD|371771
NC_010296.1|WP_012264917.1|1390481_1390781_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|226194
NC_010296.1|WP_002783495.1|1388104_1388305_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|224514
NC_010296.1|WP_002783497.1|1388301_1388508_+|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl|CDD|377942

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_041803893.1|1389030_1389813_+|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl|CDD|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	2.34881e-99
NC_010296.1|WP_125730803.1|1391285_1392463_-|IS630-like-element-ISMae25-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.3303e-19
NC_010296.1|WP_012264924.1|1398912_1399536_+|hypothetical-protein	gnl|CDD|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	2.00315e-45
NC_010296.1|WP_002735229.1|1397139_1397376_+|NifU-family-protein	gnl|CDD|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	1.64804e-34
NC_010296.1|WP_012264921.1|1394158_1396009_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl|CDD|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	2.96521e-76
NC_010296.1|WP_012264918.1|1390783_1391044_-|CopG-family-transcriptional-regulator	gnl|CDD|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	0.000424999
NC_010296.1|WP_012264926.1|1400531_1401737_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	5.4382e-20
NC_010296.1|WP_012264916.1|1390024_1390378_-|XRE-family-transcriptional-regulator	gnl|CDD|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	1.16296e-27
NC_010296.1|WP_012264925.1|1399573_1400503_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.18005e-21
NC_010296.1|WP_012264923.1|1397663_1398752_+|isocitrate-dehydrogenase	gnl|CDD|333905	pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.	3.19068e-46
NC_010296.1|WP_002798675.1|1396191_1396839_+|DUF3386-domain-containing-protein	gnl|CDD|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	7.14895e-123
NC_010296.1|WP_012264917.1|1390481_1390781_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	8.40386e-16
NC_010296.1|WP_002783495.1|1388104_1388305_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	1.90381e-10
NC_010296.1|WP_002783497.1|1388301_1388508_+|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl|CDD|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	2.63271e-21

Protein sequences

>NC_010296.1|WP_002798675.1|1396191_1396839_+|DUF3386-domain-containing-protein
MTVATTNARDIFRSAYENRYTWDERFPGYTADIILTQGEEVHTGKIQVNADYSVEVTGIDDEKVQESIYNQMRDIVTHRKRGNFDASHGKNQFNFGQDDPTGAVEILVTGDAMGSNYKVRGQEICQVSRVMGPMAFTINTEESLDTGEGYISIRYNAIFRNAKTDELKGKRDFKETYEKIGNYYLPSCQVINAIDAGGEKSTTEFTFINLQLLES
>NC_010296.1|WP_012264921.1|1394158_1396009_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MAEETAKIKLYRKTYQLPQLNRPDLLILQDQIQERQQLIKTGKRVRNTWLGLRKKEEPLNFEETFQELERLVGDYNQLIRFLTDHKDEYRRFFQSLTEEIKEAVAVKCQKLAETERKRQSLENSIGSAELRDTLRLQKQQIFRTVILVGRASLLMLKKIDLISESIQKLAEDQDTQKRVFSKMIGELNGYKQVYQLQLELDNLEKEAIEMAKVAINLEQYLKPIIGQFQGLIDQVATIDGELSRSVSEVESLVQNILSSESAVSFRKNENLSASLLNFLVTSEEKRGRLAIALERAEQEGWQWTEVEIPDEEIELETAIQRINNHVIERVGNFSTSVVGDSPIPPLPQPETPLDNKTPSSPSDWMIASKSAQPETPLDNKTSFIENLPNGITLKMVSLPAGQFLMGSADSDNEKPQHQVKVNSFAIGKYPVTQAQYEAVMGTNPSEFKNNPQNPVEMVSWNDAQAFCQKLSQITGKTYRLPTEAEWEYACRAGTTTRYYFGDDANQLGNYAWYKGNSQETTHPVGQKKPNAWGLYDMIGNVWEWCEDDWHSTYENAPRDGSAWIKNGNDNCSPVRGGSWGFYPILCRSAIRNYYFRRVSRNSILGFRVVCVFGRTL
>NC_010296.1|WP_125730803.1|1391285_1392463_-|IS630-like-element-ISMae25-family-transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTPKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>NC_010296.1|WP_012264918.1|1390783_1391044_-|CopG-family-transcriptional-regulator
MNIQLKPNQEQFIQKQLKSGRFNNSEQVIDTAFYLLEILGQDYLQWVEETRQKIDVAIAELDNGEGLDGEKVINDILEKFKKAQQK
>NC_010296.1|WP_012264917.1|1390481_1390781_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNRYIIAPSANQDLNKIADYFLVVNIEAGEKLFRKFYKKCQQLVQFPKLGRSYSHIKPSLRGLPLDGYIIFYRVINETVEILRIVNGRQDLDALFSEIK
>NC_010296.1|WP_012264916.1|1390024_1390378_-|XRE-family-transcriptional-regulator
MTEYTIISGNIFEDLGFANAEEKLAKVKLASVIYDLITEQELSQQEVSQILGIDEAKISNLKNGRLQKFSLEQMFDFLVALGQKIEILVTPQALANSSLSIQVMYDSATPTQLVSLL
>NC_010296.1|WP_041803893.1|1389030_1389813_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKTDSIFYQLLQRFPACFFDLLNLPPETANSYQFSSVEVKQLSFRLDGVFLPDTPNQPIYFLEVQFQKDNRFYSRFFSEIFLYLHQTDLSNNWQGVVIYPRRSVESVETARYGELINSGRILRFYLEELREVESLGISMLQLIIAPTARAIEQGKQLIPRIRQEFPKVKQQQELLELIETILVYKLPQVSRKEIEAMFSLSDLKQTKVYQEALEEGRQEGELAAKLASIPRLLALGLNFEQIAQALELEIEQVRQATQGE
>NC_010296.1|WP_002783499.1|1388625_1388811_+|hypothetical-protein
MDALIQELEIKLRQWQPATVEQVGRYLVEIIELADQDALELLRSRLVEQEVLDIIEEPETR
>NC_010296.1|WP_002783497.1|1388301_1388508_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MKSISGKKLCKVLEKLGWILVRIKGSHYIYTRQNTTTIIVVPIHGNRDLPIGTLKGILKDAGLNEDDI
>NC_010296.1|WP_002783495.1|1388104_1388305_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MNIKVIVWQEDDLWCATVPAFPGCHTWGESYEHLMAMVKEAVEGWLEVANEQELPNPEQKLVEISL
>NC_010296.1|WP_002735229.1|1397139_1397376_+|NifU-family-protein
MSLTLTPNNVEQVLDEMRPYLMADGGNVELVEIDGPVVKLRLQGACGSCPSSTMTLKMGIERRLREVIPEIAEVEQAF
>NC_010296.1|WP_012264923.1|1397663_1398752_+|isocitrate-dehydrogenase
MTENIPTIVVMHGDQTGEELLLEALRVLQPSIIRQPLNFADFDLSLAQRRQSNNQVVHEAAEATLKTGLALKAATITPEIKGDVGSPNAILREAMNSQVILRIGRRIPGIRPIGGVYSPIAIVRMAVDDAYGAKEWRETTATGDEIAYRTSRISRATSRAVAEFTFQQAKKTGARVFGGPKFTVSATYEGMFKEELDAAAQRHPEVRYQPLLIDATFALLLQTDGEALVIPALNRDGDLLSDFVLQLYGSIAGAESLVLGFDEETLAVKTIMAEAPHGTAPALEGKNIANPMAMILAAAALLGYIETNEARKASRAIYESVFETIHEGKKTPDLGGQMTMSEFTDEVIRRVVSKLEVWSALG
>NC_010296.1|WP_012264924.1|1398912_1399536_+|hypothetical-protein
MKLQTLTKTLTIALIGVGPALTLQSPSQAQARFECLLPVTGRYVGVPTTYAKVGSNERKPVIRWVSRYSSGSGYTPQQRCLEVTKRFNTLDARPRGIDIITTGYLNGLPVIYSPSHGRERANSSNLLFTLKRGEDATQKIQLLFDLRAGHYTEPLFESSSDSVIVYFNKFLENAPVETNLATGSSPSPLPETSPEQPPQKPSGGSVW
>NC_010296.1|WP_012264925.1|1399573_1400503_+|trypsin-like-peptidase-domain-containing-protein
MSRPIKRILAGAGSLLLGLSTPLLAVQSYAPALEPNQANAYSSQQLSEQQLRQLARAITVKVLSGQGWGSGILVEKQGASYKVLTNDHVLGRYRYRGWQIQTPDGKIHRGELVRTVRLNDYDLGLVSFRSSQVYSIADLANVDDLAIGDEVFAAGFPFDGDRPTEQGFTFTLGKVSLLSDKSFSGGYQIGYTNKIKNGMSGGPLLNRQGKVIGINGIHAYPLWGKSYVFADGTVTSPALWEQMSRLSWAIPIGTFLQSGSSSPSASSRQRPAVSPPPLPTHRETTFSEDFPSPSSSTPREKNPAPTPLW
>NC_010296.1|WP_012264926.1|1400531_1401737_+|trypsin-like-peptidase-domain-containing-protein
MSNNFLKISAALVSIAVFVVSPQIAKASTTEQIEKIAEKITVLIPSEEEGANGKITANGSGSIIAKEGKVYTVLTASHVICKDARDACKFYYDQLKIITWDGKQYPLDYNSIKKLPGVDLALVQFQSDQNYQLATLANYQVADEQFIFASGWPDPKFIGKRKRLFNVGKVLPKYITPLLKIFPPELGYEIVYTSVTYGGMSGGPVLDINGRVIAVHGQNEAEKIEKVPVPIGFSLAIPITTFLKLAPQSGIQGQINVENSPPNALSLQEIGDELYKAFEVPNNNDTNPLNWLNQGNKMWRLGQLALAYAAYEKALQLDAQLYQAWYGKGLVLTYWKRSQEALAAYEQALKINPDSDTAKKLRDKLQESLGGRNTPSLTPSQPTTAPTVEPSPQPSNPRRLW
>NC_010296.1|WP_041803896.1|1401757_1402357_-|hypothetical-protein
MLMKWLTNWQVSLVAAVLLTNALVSPAMAQTGNQSDATGPILSTGDFAGQTFPSTTTVTGFQGGEPAQIAVNQAAASLNILLADNNLTSPTGTPIPAAVQQSLLSILTGDAQAGNNINAVIAALYSAPGTAPLNVIEDLLASLEKLTKDKKVVPAKLLAAVRAYNAMILASNEEFLRNPPAELRAIQAFLAKLVQPTIS
>NC_010296.1|WP_041803897.1|1402405_1403620_-|hypothetical-protein
MLLKKAKRNSQMRQIFSGGIFITSCVGTAILCDGMKALPSPLDIDAASIRVSREKIILNSPVELERTDRILTTNSFSTTEGLADSNLPSSLENKLGKSSLDTLATEKTGTISTLEEWKANLGTMQASQLFPAGGNNSPEVEKWQAQASTPVDTNVSPELQRLRQDFLIEEPKTLSAKLAEFVVAPSGSISTPIGFGANFGQIFGGFAFQSRTRFTNQADGGLALGVGLGERQKIVGLDVTLAILSLFGDNAGRGSFSFKIHRSLPEGFAVALGFENAIRWGGTDAGSSIYGVVSKFFQFTETTKEPFSQLTLSLGVGGGRFRSEGAIEDGVNSLGVFASAGLRIVEPVSAIVEWSGQDLNAGISLIPFPKVPLTVNLAGADLTGNAGDGARFVMSIGYNYFFPR
>NC_010296.1|WP_002798683.1|1404208_1404712_-|hypothetical-protein
MKTFVERYWSWFNWTTLAMVVLGFWLSASFVIDLIIIPSLSVAGMMTQNGFASAGYLLFGIFNHLELVCAAIVLCSFVVFHRYHTLIHLPEHRSLLFAGVLLVITLIYTYFLTPNLSAMGLLAPVTASGMSGEMMSLQIGYWFLEVVKGLIAFTLLRWCWRDAFKLA
>NC_010296.1|WP_002735918.1|1405002_1405317_+|hypothetical-protein
MDKDFRNYRMVCTLTFGDIYGQIIVWLIVIFLTLASTLALWSSTRQIFALATVGLVVVLSLPFLLFAFVTTLLNHIEFVPIEAETNIRRGPVPGVSGSRVPAAS
>NC_010296.1|WP_012264930.1|1405345_1405519_+|hypothetical-protein
MLKKFFLGAGCGVWGVGCGVWGFIDFQVVNYLIFREKVPEFSPQSLQWSALFEGKKV

Crispr_ID: NC_010296_10

• CRISPR_ID: NC_010296_10
• CRISPR_location: 1585741-1585902
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas14j

Consensus repeat of NC_010296_10

Consensus_repeat	Method
CTCCTGGATAATAGATATAGCTATCGGAAATTTCCAATCCCTCTGGATAAT	CRISPRCasFinder

spacers of NC_010296_10

>10.1|1585792|60|NC_010296|CRISPRCasFinder
TTGTCGGGGGAACGGCGAACGTAGTGATTTCCCTGGCAAGGGCTTCGGAAATTTCTGATT

CRISPR arrays and Neighbor proteins around NC_010296_10

CRISPR arrays

The CRISPR arrays of NC_010296_10

>merge|NC_010296|10|1585741-1585902|CRISPRCasFinder
CTCCTGGATAATAGATATAGCTATCGGAAATTTCCAATCCCTCTGGATAATTTGTCGGGGGAACGGCGAACGTAGTGATTTCCCTGGCAAGGGCTTCGGAAATTTCTGATTCTCCTGGATAATAGATATAGCTATCGGAAATTTCCAATCCCTCTGGATAAT

>NC_010296|10|8|1585741-1585902|CRISPRCasFinder
CTCCTGGATAATAGATATAGCTATCGGAAATTTCCAATCCCTCTGGATAAT	TTGTCGGGGGAACGGCGAACGTAGTGATTTCCCTGGCAAGGGCTTCGGAAATTTCTGATT
CTCCTGGATAATAGATATAGCTATCGGAAATTTCCAATCCCTCTGGATAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041803927.1|1590409_1590640_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265085.1|1588095_1589022_-|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|379312
NC_010296.1|WP_012265084.1|1587427_1588081_-|HupE/UreJ-family-protein	unknown	unknown	gnl|CDD|368209
NC_010296.1|WP_158303499.1|1584460_1584625_+|hypothetical-protein	unknown	unknown	gnl|CDD|369641
NC_010296.1|WP_002757819.1|1595513_1596182_-|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl|CDD|319743
NC_010296.1|WP_012265079.1|1578923_1581080_+|phosphoenolpyruvate-synthase	unknown	unknown	gnl|CDD|273612
NC_010296.1|WP_002752171.1|1576008_1576203_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl|CDD|378324
NC_010296.1|WP_012265073.1|1573041_1575318_+|serine/threonine-protein-kinase	unknown	unknown	gnl|CDD|238121
NC_010296.1|WP_012265077.1|1576825_1577062_-|DUF433-domain-containing-protein	unknown	unknown	gnl|CDD|225291
NC_010296.1|WP_164517016.1|1585306_1585447_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002795670.1|1592929_1594192_-|pentapeptide-repeat-containing-protein	unknown	unknown	gnl|CDD|224276
NC_010296.1|WP_012265078.1|1577151_1577847_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|381154
NC_010296.1|WP_002757834.1|1584613_1585228_-|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|368559
NC_010296.1|WP_012265091.1|1596808_1598143_-|flotillin-family-protein	unknown	unknown	gnl|CDD|225177
NC_010296.1|WP_012265083.1|1586226_1587231_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|182258
NC_010296.1|WP_012265086.1|1589224_1590421_+|homocysteine-biosynthesis-protein	unknown	unknown	gnl|CDD|376627
NC_010296.1|WP_012265081.1|1581659_1584410_-|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|235751
NC_010296.1|WP_002757821.1|1591264_1592785_+|ammonium-transporter	unknown	unknown	gnl|CDD|223083
NC_010296.1|WP_012265076.1|1576199_1576571_+|PIN-domain-nuclease	unknown	unknown	gnl|CDD|350327
NC_010296.1|WP_012265088.1|1594282_1595470_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl|CDD|223747

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_012265088.1|1594282_1595470_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	1.1e-107	355.6	0.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012265085.1|1588095_1589022_-|methyltransferase-domain-containing-protein	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.13921e-23
NC_010296.1|WP_012265084.1|1587427_1588081_-|HupE/UreJ-family-protein	gnl|CDD|368209	pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.	6.61296e-27
NC_010296.1|WP_158303499.1|1584460_1584625_+|hypothetical-protein	gnl|CDD|369641	pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate catalyzes the conversion of glucose-6- phosphate to inositol-1-phosphate, which is then dephosphorylated to inositol. Inositol phosphates play an important role in signal transduction.	0.00879407
NC_010296.1|WP_002757819.1|1595513_1596182_-|lipoyl(octanoyl)-transferase-LipB	gnl|CDD|319743	cd16444, LipB, lipoyl/octanoyl transferase. Lipoate-protein ligase B is a octanoyl-[acyl carrier protein]-protein acyltransferase the catalyzes the first step of lipoic acid synthesis. It transfers endogenous octanoic acid attached via a thioester bond to acyl carrier protein (ACP) onto lipoyl domains, which is later converted by lipoate synthase LipA into lipoylated derivatives.	1.64347e-88
NC_010296.1|WP_002752171.1|1576008_1576203_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl|CDD|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	5.98562e-11
NC_010296.1|WP_012265073.1|1573041_1575318_+|serine/threonine-protein-kinase	gnl|CDD|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.99945e-91
NC_010296.1|WP_012265077.1|1576825_1577062_-|DUF433-domain-containing-protein	gnl|CDD|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.6972e-21
NC_010296.1|WP_012265079.1|1578923_1581080_+|phosphoenolpyruvate-synthase	gnl|CDD|273612	TIGR01418, Phosphoenolpyruvate_synthase, phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. [Energy metabolism, Glycolysis/gluconeogenesis].	7.01849e-103
NC_010296.1|WP_002795670.1|1592929_1594192_-|pentapeptide-repeat-containing-protein	gnl|CDD|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.80994e-21
NC_010296.1|WP_012265078.1|1577151_1577847_-|response-regulator-transcription-factor	gnl|CDD|381154	cd19927, REC_Ycf29, phosphoacceptor receiver (REC) domain of probable transcriptional regulator Ycf29. Ycf29 is a probable response regulator of a two-component system (TCS), typically consisting a sensor and a response regulator, that functions in adaptation to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Ycf29 contains an N-terminal REC domain and a LuxR-type helix-turn-helix DNA-binding output domain. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	4.53463e-62
NC_010296.1|WP_002757834.1|1584613_1585228_-|Uma2-family-endonuclease	gnl|CDD|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.31516e-34
NC_010296.1|WP_012265091.1|1596808_1598143_-|flotillin-family-protein	gnl|CDD|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	3.30895e-61
NC_010296.1|WP_012265083.1|1586226_1587231_+|helix-turn-helix-domain-containing-protein	gnl|CDD|182258	PRK10130, PRK10130, HTH-type transcriptional regulator EutR.	4.21741e-15
NC_010296.1|WP_012265086.1|1589224_1590421_+|homocysteine-biosynthesis-protein	gnl|CDD|376627	pfam01837, HcyBio, Homocysteine biosynthesis enzyme, sulfur-incorporation. This presumed domain is about is about 360 residues long. The function of this domain is unknown. It is found in some proteins that have two C-terminal CBS pfam00571 domains. There are also proteins that contain two inserted Fe4S domains near the C-terminal end of the domain. The Methanothermobacter thermautotrophicus gene MTH_855 product has been misannotated as an inosine monophosphate dehydrogenase based on the similarity to the CBS domains. Based on genetic analyses in the methanogen Methanosarcina acetivorans, this family is a key component of the metabolic network for sulfide assimilation and trafficking in methanogens. It is essential to a novel, O-acetylhomoserine sulfhydrylase-independent pathway for homocysteine biosynthesis, and may catalyze sulfur incorporation into the side chain of an as yet unidentified amino acid precursor. The DUF39-CBS and DUF39-ferredoxin architectures repeatedly occur together in the genomes of methanogenic Archaea, suggesting they may be of diverged function. This is consistent with a phylogenetic reconstruction of the DUF39 family, which clearly distinguishes the CBS-associated and ferredoxin-associated DUF39s.	0
NC_010296.1|WP_012265081.1|1581659_1584410_-|glycerol-3-phosphate-acyltransferase	gnl|CDD|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	1.89453e-86
NC_010296.1|WP_002757821.1|1591264_1592785_+|ammonium-transporter	gnl|CDD|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	9.73171e-142
NC_010296.1|WP_012265076.1|1576199_1576571_+|PIN-domain-nuclease	gnl|CDD|350327	cd18760, PIN_MtVapC3-like, uncharacterized subgroup of the VapC3-like nuclease subfamily of the PIN domain superfamily. The VapC3-like nuclease subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of various Mycobacterium tuberculosis VapC toxins including VapC3, VapC11, VapC15, VapC21, VapC25, VapC28, VapC29, VapC30, VapC32, VapC33, VapC37, and VapC39. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.96914e-64
NC_010296.1|WP_012265088.1|1594282_1595470_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl|CDD|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.27156e-68

Protein sequences

>NC_010296.1|WP_164517016.1|1585306_1585447_-|hypothetical-protein
MPNGDLKTNWQLTPFMNLAVVTNYIFGFVLIVFGSDSAIADCVESL
>NC_010296.1|WP_002757834.1|1584613_1585228_-|Uma2-family-endonuclease
MSQTLPKTVNFEEFVLWLPENSGVRYELHKGNIIEMAQPAGEHEEIKGFLTVKLSGIIDRLGLPYLIPNQAIVRPAGKNSGYFPDVLVLNRTKLAQEKLWKKESILRDGASIPLIIEVVSTNWRDDYYLKFADYEEMGIPEYWIVDYAALGGRNFLGTPKQPTISVCRLVEEEYQIRQFRDRDILISQTFTELNLTVNQIFLSL
>NC_010296.1|WP_158303499.1|1584460_1584625_+|hypothetical-protein
MNTKVIKEIELNGLKPKQMEQIKAIIADFKRQNQPLKLKKKAKRVRWTMHTLQT
>NC_010296.1|WP_012265081.1|1581659_1584410_-|glycerol-3-phosphate-acyltransferase
MREIWGSLFIFLVCPIIGGLPLIDWINYLVTGRKLSQLGTGNIGVTAAFYHGGKLVGILAVISEAAKGIIVILLTRLFFPTGSSWELLALIALVVGRYWLGKGAGTTNVFWGLIVHDFVAVFLTSIISGISFTIFREKSTGRLVGLFLLALILTLRRPHDSGYIITAIALACLLGAIFQKIADDLDLPEASVNNESKTMFRFFRGDRSIQTLDDNLVASKVGQKAATLADLKRAGYPIPRGWILPPGDDPQPLIESLNPDINHPLVVRSSAIGEDGETASSAGQYTTILNVIDRENLAAAILSCQTSYNSPNAVNYRLDRGQENTAMAVLIQEQIRGVFSGVAFSRDPINPLSLDVVIEALPGDATRVVSGRITPESYRVNLEENIIIGAGDIPPAIIQQVANLCRQLENLDHGIPQDIEWTHDGRKLWLLQCRPITNLQPIWTRKIAAEVIPGVIRPLPWSINRPLTCGVWGDIFWLVLDKKALDLDFNKTATLHYQRAYFNASLLGTIFRRMGLPPESLEFLTKGAKFTKPPLTATLANSPGLLKLLGRELQLEKDFSQDQKNYFIPTLKKINATSPEALSSGEILEQIEEILTVLKKATYYSILAPLSFALRRSISQVPFERLDNSQAPEIASMRSLSELRKNTIDRDFDSAFSLWLETYGYLSEVGTDISIPRWRENPQELLQLPLDSPGNNSHKKVKSSHTVQKRLNIKNQVTEIYSRLLAHLRWHFLALETLWLQQQILSETGDIFYLNYSEVIQLGQNNKIANLNQIIRQRRQQFQENSQLTDIPYIVYGQPPKREFLVSNLTAKKRLQGIAASGGTVEGRIKIMPTLQNLEIAPNTILVIPYTDSGWSPLLSQAVGIIAEVGGQLSHGAIIAREYGIPAVMDVHNAMKLLKDGQLIRLDGSQGIIEIL
>NC_010296.1|WP_012265079.1|1578923_1581080_+|phosphoenolpyruvate-synthase
MTILCWLDRISASDRPLVGEKAFIASELHQGGYPIIGGFAIFNRIFAEFLETINNADSFLTDFPQSSLYLDVDNAKALQLVAKESRRAILQAQIPPLWLEELAAAVAQLSMDTLVWRFSLPANLARRTLGLFSAPISGIKADNLENALKQAWAELFNAKSLFYWRKMGIGLEKIQLSLLVQPLLPANCAGNVLINDDNWKIQAVWGLGHSLVNGEVAPDTYIIDRSGQLRSRQLGNKSRAYYLNSDSNLLAPQLLAPSLQESYCLDNFALDRLCQLVQSLLTEKPTLTSIEWLMMLDGQIYILNCHSQEITATTCHYPLRGLGASPGLASGVAKVISNFDSPEANFQDCILVTTNLPPKKLPHLRQIRAMITEQGGLTSHGAILARELAIPAVVGVKNATEIIRSGEIILVDGTRGIISLASQEQISLPSAPPRETDGTAIATRLMVNLSQTESIAGIQELPIDGIGLLRSEWMILELLSQRNLEEWLTPEHQEALIERLSDLIAQFALSIQPKPLFYRSFDAQHSTKDSRGTHGYILDPTLFDLELQALRRVQTTSATNINLLLPFVRGVEEFIFCRQRVQSALLTQVPSFQLGIMVEVPGVIFQLGDYVQAGVQLIAIGTNDLTQLLLGSDREHFSEYFNARHPAVRAALKQIITQAKVLQIPCSVCGMAIVQYPEIIDDLIAWGVTSLSVDTEAVLATREAIVRAERRFLLENSR
>NC_010296.1|WP_012265078.1|1577151_1577847_-|response-regulator-transcription-factor
MDTPAKVLLVDDEPGVRESVQAYLQYGDDFEVRTASNANEAWDLLNQEIPELVISDIMMPQVDGYQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIERRRQSLQATSENARLEEIARDIRELKQQVGQQNTFTTTPPPIKIDLTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGLTN
>NC_010296.1|WP_012265077.1|1576825_1577062_-|DUF433-domain-containing-protein
MEKQLWQRITLDLNICHGKPCLRGLRYPVEFILELLSSGMGIEDILADYDDLEREDILAALLFATRLTQVKSIYQIAP
>NC_010296.1|WP_012265076.1|1576199_1576571_+|PIN-domain-nuclease
MILVDSSVWIDLLLGVEPIAIGDIILTEVLQGFRSDKDYQIAYRLLTSLTIYDLLGLRMALKSADNYRQLRKKGITIRKTADVIIASFCIENNLPLLFSDKDFIPFVKHLKLISACPTTNDER
>NC_010296.1|WP_002752171.1|1576008_1576203_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MMTNIIIDDQLMADALKATGLKTKQEVVELGLKTLIRLKQQEKIKAFKGKLKWEGNLEEMRHNQ
>NC_010296.1|WP_012265073.1|1573041_1575318_+|serine/threonine-protein-kinase
MKPCYCINPDCSQPGHPSNNNSNTRYCQSCGSQLLLNGKYRVSRLLSDTTGFGIVYEAFEGFTAKILKVLQEKWNNQPKAVELFKREYDVLLELSRQNVTGVPRADAYFQYSTREGKILHCLVMEKVEGINLEQWLKQYDKLSQKRALKWLREITLILDKIHQQNWMHQDIKPPNIMLRNSGELVLIDFGTAGTAREETQTYHQKGKGQQVTGITSVGYTPNEQQHSQAVIQSDFHALGRTFMHLLTGKHPLEIYYDAYNDVLAWREETENIHPLLLDFIDELMGRLPKNRPANTRVILQRLDEIERQLKLPPITPIITSPPPPNPQPVVNQKQPQVIPNINPSPPVSPVAVPKKTPAQPVKNNKLRNRIIALGGVLLLGIGITQGYGYLKYKRFPVTPQFLISGLVDTPFLYKTFTGHSEAVNSVAYSPDGRFLASVSNYDSIKIWDIENGKEPLNLANNSSLINLVAYNPLAVIILDGIVSPLPLQQQVELNLNKVLSVAYSPDGRYLASGGGTLLTQGEEQGEEQSVDIIKIWDIERRKELFPITVNSRHIVNSVAYSPDGRYLASGSADKTIKIWDTKTGTELSTLTGHSEAVNSVAYSPDGRYLASASSDETIKIWDVKNNKELNTFIYNYSKTITGVGYLIRIAYSPNGRYLASGYLNGTIQLWDVKTGNKVHTLTGHSGSVIPLAYSPDGRYLASGSSDGTIKIWEVATGKELRTLTGHSDTVWSVVYSPDGRYLASGSGDKNIKIWRVGQ
>NC_010296.1|WP_012265083.1|1586226_1587231_+|helix-turn-helix-domain-containing-protein
MFIFDSKTDILINSQELTFKSEYFCDFSRYFQNREFVNGDALQLSGDHFEGYLSRIIIDEVMLELSQRNCLINVVGVVHSKMWVFAIPIQVNSVFFQNLYSLENNYLGIVPPKSEISIFQHPFSNRFQLYVHDNYLQQLCQTLELPEAKKFLNSSAASIVICPSEKIRHLQQSCHQLYRMLFNLDRQQISWQRKALRLNFFKQKLKEEIVKDFLLTLAVTKDIKTPKNTIRRTSILKKAEEMMRKNLRSDLTIPAICQELKVSQRTLEYIFKDFYQMSPYNYFKLLRLNALHQSLNQNNQTKLVYEIAEELGFFHRGYLASDYKKLFGYFPSET
>NC_010296.1|WP_012265084.1|1587427_1588081_-|HupE/UreJ-family-protein
MKIIFRQSWTKILTIVPLFLLIFASKTLAHHAMAGQTPDNFWNGFLSGLAHPVIGLDHLAFVVASGLIAVGMEQGLLIPLAFAIATLIGTGIHLQGINLLFPEGIVALSVVIFGVVLTLKKGLQTHSNLYTIALATLAMIAGIFHGYAYGESIIGARVAALVAYLIGFTVIQLAISSGAFFLGSVIKEKLAKQATLISKFIGLAIMAIGTTFLVGIK
>NC_010296.1|WP_012265085.1|1588095_1589022_-|methyltransferase-domain-containing-protein
MTVTPVPASFNPVSGLVNRILGIKPLFDIARYQARNMMIKRAEKLGVPWRETVKQWQQRDWSWELQAVENPDLVYPEYYVCSFHAYEKGNLDWLPAFEVESAAYAVHSTIWPGAGMDGDPRLRREYHRILKEQIKAEINDIVDLGCSVGMSSFALQDTYPQARVTGLDLSPYYLAVAQYQAQQKQKTIQWQHAAAEKTQLPSQSYDLVSSFLMFHELPQQATREIFAEARRLLRSGGYLTLMDMNPRSEIYRKMPPYVLTLLKSTEPYLDQYFTLDIEQALVEAGFQAPIITPTSPRHRAIVARVSES
>NC_010296.1|WP_012265086.1|1589224_1590421_+|homocysteine-biosynthesis-protein
MRTIAEINDKIAKKTAVVWTVEELKSRVSEMGIKEVFSQVDVVCTGTFEPMESSGAIINLGQTDPPIKIRQCWLDGIPAYAGFGAVDLYLGASAISDLAAKNENLEGENPERGGGHIIEDLIAGKSIQLRAVGQATDCYPRTSFETIISKETINQFYLFNPRNLYQNFIVGVNGGERTLYTYLGPLQPRLGNAVYSNPGAISPLLNDPDLEAIGIGTRLFLGGGIGYIAWEGTQHFPLQKRLQNRTPIGPASTLALIGDAKQMNARWVRGCYFKNYGASLMLGVAVPIPILSEEIVRHCAVKDEEIVAPVVDFSIPRRVRPTFGLITYAKLKSGRIMIEGKSVRVAPLASISLAREAALELKALIESGEFTLTEPVAKINLERTFIPQDRWGGKLSIE
>NC_010296.1|WP_041803927.1|1590409_1590640_-|hypothetical-protein
MNQKVFILATASASLLALLVTTNSVQAAPESFHPSFNTENLGDMIIGKTTGEENPILRHLNCSCATCTQSFNSSLN
>NC_010296.1|WP_002757821.1|1591264_1592785_+|ammonium-transporter
MTKKTAYHLNTPIIIPTIACLAILLILVIAEISVAQTATSDNSEALYRELRVKIDTLWVIFTACLVFFMNAGFAMLESGFCRSKNTVNILTKNLIVFALTTIAFWSFGFGLMFSQGNGFVGLSGFFVLGADNSPNTGLNYLGIFPSLSWAGIPLQAKFFFQLVFAGTAATIVSGAVAERIKFLAFFLFSLLLVAFIYPITGHWIWGGGWLARLNFWDFAGSTVVHTVGGWASLVGAVLLGPRLGKYQGSNSMALPGHNLTLSTLGCFILWLGWFGFNPGSTLAMEPEAISRILLNTNMSAATGGIAATLTAWRYFGKPDLSVIINGILGGLVAITAACPYVQIGWAAIIGMISGILVVLSVDFFDRLQIDDPVGALSVHLVCGLWGTFAVALFAAGIEANFYTQGPVRGLLLGGGLPAIKQVFVQLLGCAAVSLYTVIVSWSAWKAIDFFVGLRVSTEAELRGLDLSEHGLQAYSGFLFKSDLAHKVSAIIPKRTIIPPKDRGADK
>NC_010296.1|WP_002795670.1|1592929_1594192_-|pentapeptide-repeat-containing-protein
MSDRKDPEKLAAENRDDNPENNGKTSLSPPDASEYVSSLSSRNPVRQRILLLKDLRPGNAGLLLAPLMVMTIGLVFSWDWLGFSGAIVAILISLQVILPSIRQWIAHYLTPSERQTVFAFIVFIAALAALGKYLGVYERILRWLESFKYDEFGSWAEWVGALGQIMIAVLAVYVAWEQYVISKDLTIQQNRITQQQTIDSYFQGISDLALDEEGFLEDWPQERAIAEGRTASILSSVDASGKAKILRFLSQSRLLSPIKRDRYLGRPILDGEGGYAEDREFGTRVVQLGVMLAGSDISGQDLRWTDLSEANMVRADLSYSDLVKANVSRTILYEANLRGADMKGMRLFYGSLENATPRSRSVPPNYDTGEHTGAVVENVNFTGVKNMSEEQRHYCCRWCGEKSRATIPGGCADIANLLGR
>NC_010296.1|WP_012265088.1|1594282_1595470_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MEKAYSFRFYPTPEQESLLRRTLGCVRLVYNKALHERTQAWYEKQERVGYAETSSMLTEWKKQEELDFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPNFKKKHQGGSAEFTKSAFKFKDKQIYLAKCTEPLPIRWSRQIPESCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPPTDKAIGIDLGISSLVITSDGDKVSNPKHFKKHYQRLRKAQKNLSRKQKDSKNREKAKIKVAKIHAQITDSRKDHLHKLTTQLVRENKTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYKCRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNVREWDCPDCGTHHDRDINASKNILAAGLAVSVCRATIRPEQSKSVKAGAKNPSGQKQKPKS
>NC_010296.1|WP_002757819.1|1595513_1596182_-|lipoyl(octanoyl)-transferase-LipB
MNAQKMPRLCGLKIQAITPYSLAWSHQRSLVEARIANPDLPDVLLLLEHPPVYTLGTGSDIKFIKFNLDKTDKEVYRIERGGEVTYHCPGQLVGYPILNLRYYRQDLHWYLRQLEEVILQTIAIYGLSGERIAGLTGVWVEGYKIAAIGIKVSHWITYHGFAINVCPDLSGFAEIIPCGIANKPVGSLRQFLPNISLMQVQQDLSRVFASVFGVELFSLDKD
>NC_010296.1|WP_012265091.1|1596808_1598143_-|flotillin-family-protein
MNSQNNSYLIQINSNQYDNNNNNSAGNLLLNSVPIALLIFLGIGAIWFINAFLCICKPNEVVILSGMKRKSKDRQDVGYRVISGGRAIRIPVLETVKRMDVTTTPIRIEIKNAYSKGNIPLNIVAIANVKVSSKPEIVGNAIERFLDRDREEIIRVAKETLEGNLRGVVATMTPEQVNEDRLKFAESITSNVSQDLFKLGLEIDTLKIQNVADDVDYLNSLGRERIALVMRDAEIAESNALNEAEQIVAECEEQATVAKTRDQIIILEQENELRKLKAKLEQQAKSEEEITIAAAKEKRAIVEEKLQQVRAELERLRLQADQVLPAEAQQEAETFRARGEAAIFEENAKAEALVNELFAEVWQNTGSEAEAIFLIQQLETILEEAIKIPKRLHLERVNIVDNGDGKSLATLIKVYPEIVNQFLASVHQTLGIDVVGTLTNKIEK

Crispr_ID: NC_010296_11

• CRISPR_ID: NC_010296_11
• CRISPR_location: 1635598-1635708
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_11

Consensus_repeat	Method
TCTTTTAGAAAAGGAACAAGAACGACA	CRISPRCasFinder

spacers of NC_010296_11

>11.1|1635625|57|NC_010296|CRISPRCasFinder
GGCAAAAGAACAGGCTTTTTTAGAAAAAGAACAAGAACGACAGGCAAAAGAACAGGC

CRISPR arrays and Neighbor proteins around NC_010296_11

CRISPR arrays

The CRISPR arrays of NC_010296_11

>merge|NC_010296|11|1635598-1635708|CRISPRCasFinder
TCTTTTAGAAAAGGAACAAGAACGACAGGCAAAAGAACAGGCTTTTTTAGAAAAAGAACAAGAACGACAGGCAAAAGAACAGGCTCTTTTAGAAAAAGAACAAGAACGACA

>NC_010296|11|9|1635598-1635708|CRISPRCasFinder
TCTTTTAGAAAAGGAACAAGAACGACA	GGCAAAAGAACAGGCTTTTTTAGAAAAAGAACAAGAACGACAGGCAAAAGAACAGGC
TCTTTTAGAAAAAGAACAAGAACGACA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002781451.1|1625642_1626071_+|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl|CDD|350229
NC_010296.1|WP_012265119.1|1626279_1627206_+|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|187541
NC_010296.1|WP_002797868.1|1635843_1636449_+|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl|CDD|235662
NC_010296.1|WP_012265131.1|1643834_1644101_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265123.1|1633138_1633639_+|hypothetical-protein	unknown	unknown	gnl|CDD|273806
NC_010296.1|WP_012265121.1|1629910_1631599_+|sulfate-permease	unknown	unknown	gnl|CDD|273284
NC_010296.1|WP_002760009.1|1640142_1641027_-|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl|CDD|273373
NC_010296.1|WP_002760006.1|1638008_1638773_-|type-I-methionyl-aminopeptidase	unknown	unknown	gnl|CDD|235576
NC_010296.1|WP_012265133.1|1644615_1645413_-|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|184588
NC_010296.1|WP_012265126.1|1636669_1637851_-|aldo/keto-reductase	unknown	unknown	gnl|CDD|224370
NC_010296.1|WP_012265128.1|1639321_1640131_-|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224042
NC_010296.1|WP_012265130.1|1642399_1643413_-|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl|CDD|270283
NC_010296.1|WP_041803938.1|1632582_1632963_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002781446.1|1632129_1632450_+|DUF5615-family-PIN-like-protein	unknown	unknown	gnl|CDD|350852
NC_010296.1|WP_002781447.1|1631909_1632128_+|DUF433-domain-containing-protein	unknown	unknown	gnl|CDD|377269
NC_010296.1|WP_012265129.1|1641031_1642006_-|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl|CDD|223646
NC_010296.1|WP_002754710.1|1628876_1629560_+|nitrogenase	unknown	unknown	gnl|CDD|369150
NC_010296.1|WP_012265124.1|1634088_1634874_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|226983
NC_010296.1|WP_158303501.1|1638839_1638995_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265120.1|1627251_1628637_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|223936

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002781451.1|1625642_1626071_+|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl|CDD|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.54083e-21
NC_010296.1|WP_012265119.1|1626279_1627206_+|SDR-family-oxidoreductase	gnl|CDD|187541	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs. UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_010296.1|WP_002797868.1|1635843_1636449_+|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl|CDD|235662	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase.	8.965e-107
NC_010296.1|WP_012265123.1|1633138_1633639_+|hypothetical-protein	gnl|CDD|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	0.000831117
NC_010296.1|WP_012265121.1|1629910_1631599_+|sulfate-permease	gnl|CDD|273284	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1. The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions].	4.05509e-149
NC_010296.1|WP_002760009.1|1640142_1641027_-|phosphate-ABC-transporter-permease-PstA	gnl|CDD|273373	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	4.14089e-85
NC_010296.1|WP_002760006.1|1638008_1638773_-|type-I-methionyl-aminopeptidase	gnl|CDD|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	2.54516e-163
NC_010296.1|WP_012265133.1|1644615_1645413_-|phosphate-ABC-transporter-ATP-binding-protein	gnl|CDD|184588	PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional.	3.85152e-179
NC_010296.1|WP_012265126.1|1636669_1637851_-|aldo/keto-reductase	gnl|CDD|224370	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only].	8.71598e-138
NC_010296.1|WP_012265130.1|1642399_1643413_-|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl|CDD|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.11803e-93
NC_010296.1|WP_002781446.1|1632129_1632450_+|DUF5615-family-PIN-like-protein	gnl|CDD|350852	cd18770, PIN_Mut7-C-like, uncharacterized subgroup of the Mut7-C-like family of the PIN domain superfamily. The Mut7-C-like family of the PIN domain superfamily includes the C-terminal domain of Caenorhabditis elegans Mut-7 (also known as exonuclease 3'-5' domain-containing protein 3 homolog) Mut-7 is involved in RNA interference (RNAi) and transposon silencing in C. elegans. The Mut7-C PIN domain family is recognized as a genuine PIN domain, however it is not included it in the CDD PIN domain superfamily hierarchical model as it is lacks a core strand and helix (H3 and S3). The PIN (PilT N terminus) domain belongs to a large nuclease superfamily, and were originally named for their sequence similarity to the N-terminal domain of an annotated pili biogenesis protein, PilT, a domain fusion between a PIN-domain and a PilT ATPase domain. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Other PIN domain families are: the FEN-like PIN domain family which includes the PIN domains of Flap endonuclease-1 (FEN1), Exonuclease-1 (EXO1), Mkt1, Gap endonuclease 1 (GEN1), and Xeroderma pigmentosum complementation group G (XPG) nuclease, 5'-3' exonucleases of DNA polymerase I and bacteriophage T4- and T5-5' nucleases; the VapC-like PIN domain family which includes toxins of prokaryotic toxin/antitoxin operons FitAB and VapBC, as well as, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and, rRNA-processing protein Fcf1; the LabA-like PIN domain family which includes the PIN domains of Synechococcus elongatus LabA (low-amplitude and bright); the PRORP-Zc3h12a-like PIN domain family which includes the PIN domains of of RNase P (PRORP), ribonuclease Zc3h12a; and Bacillus subtilis YacP/Rae1-like PIN domains. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_16.	1.20928e-08
NC_010296.1|WP_002781447.1|1631909_1632128_+|DUF433-domain-containing-protein	gnl|CDD|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	2.8162e-17
NC_010296.1|WP_012265129.1|1641031_1642006_-|phosphate-ABC-transporter-permease-subunit-PstC	gnl|CDD|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	3.19346e-92
NC_010296.1|WP_002754710.1|1628876_1629560_+|nitrogenase	gnl|CDD|369150	pfam06967, Mo-nitro_C, Mo-dependent nitrogenase C-terminus. This family represents the C-terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria. Note that many family members are hypothetical proteins.	4.86717e-59
NC_010296.1|WP_012265124.1|1634088_1634874_+|Uma2-family-endonuclease	gnl|CDD|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	7.77655e-17
NC_010296.1|WP_012265128.1|1639321_1640131_-|phosphate-ABC-transporter-ATP-binding-protein	gnl|CDD|224042	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism].	3.71733e-167
NC_010296.1|WP_012265120.1|1627251_1628637_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl|CDD|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0

Protein sequences

>NC_010296.1|WP_012265124.1|1634088_1634874_+|Uma2-family-endonuclease
MTTLDILPEVTCPPTDLWSDEPPLESDLHLQQIIILLSCLELLWQEKNDYYASGNLTIYYNEEQLKKRDFCGPDFFVVLDTEKRPRKSWVVWGEQGKYPNVIVEIISDSTANIDRTKKKILYQNTFRTPNYFWFDPNTLELQGFTILEGQYQAISPNDQGYLWSEQLGLYLGIFDRKLRYFTADGQLVPTPQEAELQQRQAKEQILLEREQILLEKEQERQAKEQAFLEKEQERQAKEQERQAKERLAAKLRELGINPETI
>NC_010296.1|WP_012265123.1|1633138_1633639_+|hypothetical-protein
MDTQEVFSLIDNLVFDHTGKHLDTLQLGILKNVFDGQKYAKIAEKYNCSEGHARDKAYELWRILSEVLGEELNKSTVRAAIERLIVSNSINNLGNKSVKIDQVTFCHNPSNNREIENYHIDKTENNVIKAKLETVPKLIGLGLTIEQIAQALDLDIQLILDSLKPE
>NC_010296.1|WP_041803938.1|1632582_1632963_-|hypothetical-protein
MRVIKILFMFIGVGLIHSAPIQANNMSNDILISQSRRQYQCKTGPMFINERQIVEPNISGASVSGDYCYVPVSAGKCIAMAPFFNFGGGSGPSGMSKCNPNSITVTDDATGIKYYRFNGGDSFVLQ
>NC_010296.1|WP_002781446.1|1632129_1632450_+|DUF5615-family-PIN-like-protein
MRLLLDECIDRRLMREFTGYNIKTVPQMGWTGIKNGQLLGLASQEFDIFITVDKNLPFEQNLPQFNLAIIILQSQSNRLADLKPLVPKVLEVLATVTKGTATVVSL
>NC_010296.1|WP_002781447.1|1631909_1632128_+|DUF433-domain-containing-protein
MAKYSPLIHVSPETMSGVPVFSGTRVPIQTLFDYLKAGESIDDFLEGFPTVTREQVISLLAEFEKELIDRVA
>NC_010296.1|WP_012265121.1|1629910_1631599_+|sulfate-permease
MSKNSRRVDFPDLPGLKNLRSYQWQWLGRDILAGVTVAAYAIPQCMAYGDLAGVDPVVGLWTLVPAALVYALFGSSSQLSLGPESTTAVMTAAAIAPMVSLQGENYGSLAAFLALMVGLICLVGYIARLGFLANLLSKPILIGYMAGVAVIMIAGQLGKISGLSIGENTVFKEILAFFRGINQWHWPTLSLALLLLLFLFVIQKYFPKAPGPLLAVLLGTLAVATLHLDGEGVAVVGKISNTLPNFGLPTLDFSQLLPLVTAAVGIALVGYSDNVLTARAFAARHNQEIDANQEFLALGLGNLAAGFCQGFPISSSASRTAVGDSVGSKSQLYSLVVAVVVVAVIFLLGPVLALFPKAALGALVIYAACKLVDIAGAKRLKSFRNSEFNLAVLTMVGVLTTGILSGVAIAIGLSVIDLLARITRPDDAVLGTVPGVMGLHALQDWPEAQTIPGLVIYRYDAPLFFANAADFKRRALSAIARETKPVEWFVLNTEALGELDSTAVEILEELAAELSRRGIVFALARVKHDLYLQLQLSRLLDKVSEERIYYTLPAAIEAFKNR
>NC_010296.1|WP_002754710.1|1628876_1629560_+|nitrogenase
MVSSVQYRYTNEQVRDWLRGLLTIAWSDGDYSTSEQESIARFAHELELDDDHVLYQSISPEELAASFGHDPKISENFLRTAVMVAIADGIYSPAEAQLLRSYRDAFGLEIEALSALEHTICEIPEITTEANKSEFISAEHPHPDLLHPLKDWLDGVEMHDPRLARFICKMVPPQCPFERDIVLFGHKLVHIPPLCKLNPLYEQLVGLRFRALSYLADDCQEDISEYI
>NC_010296.1|WP_012265120.1|1627251_1628637_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MRVCVIGTGYVGLVTGVCLAHIGHHVICIDNNEEKVKLMKSGQSPIYEPGLSELMQSSAASGNLEFSTDLEAGVKHGEILFIAVGTPALPTGESDTRYVEAVARGIGAHLNGGYKVIVNKSTVPIGSGDWVRMIVLDGVAERQKNLVAAGGGISTLERIEAEFDVVSNPEFLREGSAVYDTFNPDRIVLGSNNPKAIEMMKELYAPLIERQFAEDTSLPPVPVVVTDLSSAEMIKYAANAFLATKISFINEVANICDRVGADVTQVAKGIGLDSRIGSKFLSAGIGWGGSCFPKDVSALVHTAEDYGYETELLNAAINVNKRQRTIAIEKLQQELKILKGKTVGLLGLTFKPDTDDMRDAPALTMIEQLNRLGAKVKAYDPIVSQSGLSHGLSGVIIESDPERLADGCDALVVVTEWQEFLRLDYGKMVKTMREPVLIDGRNFLDPAVVTAAGFRYLGIGR
>NC_010296.1|WP_012265119.1|1626279_1627206_+|SDR-family-oxidoreductase
MRILVTGGAGFIGSHLIDRLMEQGHEVICLDNFYTGVRRNIVKWLGNPYFELIRHDITEPIRLEVDQIYHLACPASPIHYQYNPVKTIKTNVLGTMYMLGLAKRVKARFLLASTSEVYGDPDVHPQTEEYRGNVNCIGPRSCYDEGKRVAETLAFEYYREHKVDIRVARIFNTYGPRMLENDGRVVSNFVVQALRGEPLTVYGEGSQTRSFCYVSDLVEGLMRLMNGDFIGPVNLGNPDEYTILELAQVIQGMINPEAELVYKPLPEDDPKQRQPDITRAKTYLDWSPTIPLSQGLKMTIEDFRSRLS
>NC_010296.1|WP_002781451.1|1625642_1626071_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MTQYILDTDHITLLQKLHPNLVRRVASIDPDDTAITIITLEEQVRGWFSVIRKYSQSNQYEKLIKGYQGLRDIVNYLSKFKILNYTLEAHYHFRELREQKIRIGTQDLRIAAISLSENSILVTRNYRDFSQIPNLRLQDWTI
>NC_010296.1|WP_002797868.1|1635843_1636449_+|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MQLTPEQYKEKMQRRKVIQEERLAEKIAEKGLIIVNTGDGKGKTTAALGMVLRSLGHGYKVAVVQFIKGAWEPAEQKIFSVWGEQIEFYAMGEGFTWETQDRERDIEKAQEAWQKALTFLENPQYKLILLDEINIALKFGYLDIQEIIAGLARKPANSHVILTGRGALPELIEIADLVTEMKLIKHPFRQQGVKAQPGIEF
>NC_010296.1|WP_012265126.1|1636669_1637851_-|aldo/keto-reductase
MQYRRFGRTNLQMPMFSCGGMRYQFQWQDVPMSQIPDENQGNLEAIINKSLEVGINHIETARGYGTSEMQLGKILPQLPRDKIIVQTKVSPSQDVREFRRKFEQSRQFLRLDYVDLLGIHGINTEEILDDTMAEGGCWQEAKKLQQQGKVRFIGFSTHAPTDVIVKIIATNCYDYLNLHWYYIFQNNWPAIEAAKQHDMGVFIISPSDKGGHLYNPPPKLVALCFPLSPMVFNDLFCLSHPTVHTLSIGAARARDFDEHLKTLPLLDRAEEILPPIIERLQGEMINCLGDNWVKTWSVGLPSWENTPNHINIPSILWLRNLAIAYDMIDFAKARYNLLGNGGHWFPGQQAKEVEKLDLTACLAASPHADQIPYLLAETHRLLSGETVQRLSSS
>NC_010296.1|WP_002760006.1|1638008_1638773_-|type-I-methionyl-aminopeptidase
MGNDTITLLSPREIEKMRRAGRLAAKLLDHLADMVKPGVSTLEINDEAERWTRAHGAKSAPLGYHGFPKSICTSINEVICHGIPSADQILKDGDIINIDVTPILEGYHGDTSQTFFVGTPSPLAKKLVEVTRECLQRGIDAVQPGGKIGDIGAAIQEYAEGQGFSVVRDFVGHGISNVFHTGPQVPHYGTRGKGKKIRPGMVFTIEPMINEGTWQHIVLKDGWTAITKDGKLSAQFEHTIAVTETGVEILTLSD
>NC_010296.1|WP_158303501.1|1638839_1638995_+|hypothetical-protein
MFRGLGYGSGGDGEVGRWGVGCGVWGVGCRVWGSGEVGRPLRARCGGKWGE
>NC_010296.1|WP_012265128.1|1639321_1640131_-|phosphate-ABC-transporter-ATP-binding-protein
MIDSSLMNSPTSLANSAIEVENLSFFYGSKKALEGVSLQIPQRQVTAMIGPSGCGKSTLLKALNRIGELEGQVTVKGKVRFFGQDIYAPKVNLHTLRRQVGMVFQRPNPFPASIYDNIAYGIRIYRSASRSELDGIVESALKGAALWNEVKDLLKKSALGLSGGQQQRLCIARALAVKPKVLLMDEPCSALDPLSTLKVEELIHELKQQYTLVIVTHNMQQASRVSDRTAFFNTDESRVGHLVECDATQKIFTDAVNQQTRDYVAGRFG
>NC_010296.1|WP_002760009.1|1640142_1641027_-|phosphate-ABC-transporter-permease-PstA
MSQGAFPEEDLQQPLSPWRHFFTNGLTGLAIALSAIAILPLFAILFQIVKEGLPGFNGQVFTSLPAPVGSDPSVPNGFANAIVGTLTMVGLAALGSIPLGILTGVFLSEFARGSKIGGILRFAIVVLSSTPSVIVGVFSFGVLVLTTKQFSAVAGAFALGVIMLPIIALTTEEALKLIPMSYRLGSSALGGSRFDTVFRIVLPAAIAPIMTGILLAVARAAGETAPLMFTALFSQFWQESLWSPTPALTVLIYNYASSPFPEQNSLAWTASLVLIILVLITSLLSRFVTRKRSN
>NC_010296.1|WP_012265129.1|1641031_1642006_-|phosphate-ABC-transporter-permease-subunit-PstC
MANFSEPVESFDLSAANLNESPGTAGLFNRIFTILVWICAASGLIFLLWMAWIVFQDARPAINEFGWGFLWGTTWDVNVLKFGGLPFIFGSIVSSILALLLAIPLSVAVALTTSENYLPASVRYPIGFLVELIASIPSVIIGLWGIFVLIPVLKPLQEWLFQNFAWFPLFNTQPLGPSMLIAGVILAIMIVPTISAISRDVLLTVPPELRSASMALGATRWETIWRVLLPAASSGIIGAIILGLGRALGETMAVAMVIGNSSIITPSLLAPGYTIPAVLANTFPEAFEKIHIGALMYLALILFFITLAVNSVAALLVQFINRNR
>NC_010296.1|WP_012265130.1|1642399_1643413_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MIFSTATLTRVCAVSFATAAALAGTMGEAFAQTLNGAGASFPAPLYQRYFADYKNATGVTVNYNSVGSGAGVRQFIAGTVDFGASDAAPSSSEKSQMKNGLLLVPTAGGAVAVVYNLPGVNNLQISRANLGKIFSGEITNWKQVDPKLPDRPIKVVVRADGSGTTEIFTSHLSAISSSFKSKVGTSKEPNWGFTVLKGPKNDGVAALVKQTEGSIGYVQDTFARKNEGATMRTARIQNKAGQFVEPSLAQANKAMEGIKFNADFTANVDDPSNGYPIVGITWLLVPKDYADNKKAAEIKRLLTWILTTGQGINNQLEFTRIPQSVTEKVLAEVNKIK
>NC_010296.1|WP_012265131.1|1643834_1644101_-|hypothetical-protein
MTDERLERIESIVQATVVLTQQNREDIAQLTREVRTIAGSLEGTNERLNQFITQAESDRQFFRNEVTGIRTEVKRIVEHLFGQSSDQE
>NC_010296.1|WP_012265133.1|1644615_1645413_-|phosphate-ABC-transporter-ATP-binding-protein
MYSTDVVTDAVLRTKNLNVYYGSNLAVRDVNLDIPEKKAVAFIGPSGCGKSTVLRCFNRMNDLVKSAKIEGKVTFRGQDIYGNSVNPIGLRSRIGMVFQKPNPFPKSIYENIAFGARLNGYIGDMDQLVEESLKKAVLWDDVKDKLKESGLALSGGQQQRLCIARAIAVKPEVVLMDEPCAALDPISTLKIEELIHELKTQYTIVIVTHNMQQASRVSDLTAFYNAEPTPKGGKVGYLVEYDRTEVIFQNPAQESTRDYVSGRFG

Crispr_ID: NC_010296_12

• CRISPR_ID: NC_010296_12
• CRISPR_location: 1656795-1656934
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NC_010296_12

Consensus_repeat	Method
ATCGGCACCCCCCTTATCAAGGG	CRISPRCasFinder

spacers of NC_010296_12

>12.1|1656818|14|NC_010296|CRISPRCasFinder
GGGATTAAGGGGGG
>12.2|1656855|19|NC_010296|CRISPRCasFinder
TAGCTCCCCCCGCCTGCCT
>12.3|1656897|15|NC_010296|CRISPRCasFinder
TAGCTCCCCCCGCCT

CRISPR arrays and Neighbor proteins around NC_010296_12

CRISPR arrays

The CRISPR arrays of NC_010296_12

>merge|NC_010296|12|1656795-1656934|CRISPRCasFinder
TCAGATGCCCCCCTTATTAAGGGGGGATTAAGGGGGGATCGGCACCCCCCTTATCAAGGGTAGCTCCCCCCGCCTGCCTATCGGCACCCCCCTTATCAAGGGTAGCTCCCCCCGCCTATCGGCACCCCCCTTATCAAGGG

>NC_010296|12|10|1656795-1656934|CRISPRCasFinder
TCAGATGCCCCCCTTATTAAGGG	GGGATTAAGGGGGG
ATCGGCACCCCCCTTATCAAGGG	TAGCTCCCCCCGCCTGCCT
ATCGGCACCCCCCTTATCAAGGG	TAGCTCCCCCCGCCT
ATCGGCACCCCCCTTATCAAGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002760023.1|1654748_1655351_+|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223736
NC_010296.1|WP_012265149.1|1662798_1663647_+|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl|CDD|236017
NC_010296.1|WP_012265146.1|1659797_1659995_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265134.1|1645504_1646308_-|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|184588
NC_010296.1|WP_002760030.1|1661198_1661489_-|hemolysin-XhlA-family-protein	unknown	unknown	gnl|CDD|371241
NC_010296.1|WP_012265135.1|1647633_1648593_-|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl|CDD|223646
NC_010296.1|WP_012265139.1|1651866_1653408_-|ferredoxin--nitrite-reductase	unknown	unknown	gnl|CDD|236572
NC_010296.1|WP_012265147.1|1660100_1661144_-|LD-carboxypeptidase	unknown	unknown	gnl|CDD|132882
NC_010296.1|WP_012265145.1|1658724_1659777_-|phosphotransferase	unknown	unknown	gnl|CDD|225213
NC_010296.1|WP_041803944.1|1657495_1657963_+|DUF29-domain-containing-protein	unknown	unknown	gnl|CDD|366774
NC_010296.1|WP_012265137.1|1650408_1651443_+|PstS-family-phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270372
NC_010296.1|WP_041803942.1|1656993_1657485_+|DUF29-domain-containing-protein	unknown	unknown	gnl|CDD|366774
NC_010296.1|WP_012265136.1|1648687_1649809_-|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl|CDD|273374
NC_010296.1|WP_012265141.1|1655352_1656270_-|ROK-family-protein	unknown	unknown	gnl|CDD|224851
NC_010296.1|WP_002797834.1|1662160_1662727_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_002739408.1|1653879_1654518_+|LON-peptidase-substrate-binding-domain-containing-protein	unknown	unknown	gnl|CDD|225362
NC_010296.1|WP_012265148.1|1661531_1661999_-|CBS-domain-containing-protein	unknown	unknown	gnl|CDD|341362
NC_010296.1|WP_002747647.1|1658001_1658382_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002797854.1|1646516_1647410_-|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl|CDD|273373
NC_010296.1|WP_158303502.1|1653615_1653765_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002760023.1|1654748_1655351_+|Crp/Fnr-family-transcriptional-regulator	gnl|CDD|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.53162e-26
NC_010296.1|WP_012265149.1|1662798_1663647_+|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl|CDD|236017	PRK07428, PRK07428, carboxylating nicotinate-nucleotide diphosphorylase.	0
NC_010296.1|WP_012265134.1|1645504_1646308_-|phosphate-ABC-transporter-ATP-binding-protein	gnl|CDD|184588	PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional.	0
NC_010296.1|WP_002760030.1|1661198_1661489_-|hemolysin-XhlA-family-protein	gnl|CDD|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	3.98885e-09
NC_010296.1|WP_012265135.1|1647633_1648593_-|phosphate-ABC-transporter-permease-subunit-PstC	gnl|CDD|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.09499e-104
NC_010296.1|WP_012265139.1|1651866_1653408_-|ferredoxin--nitrite-reductase	gnl|CDD|236572	PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.	0
NC_010296.1|WP_012265147.1|1660100_1661144_-|LD-carboxypeptidase	gnl|CDD|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	4.1117e-116
NC_010296.1|WP_012265145.1|1658724_1659777_-|phosphotransferase	gnl|CDD|225213	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only].	5.0241e-53
NC_010296.1|WP_041803944.1|1657495_1657963_+|DUF29-domain-containing-protein	gnl|CDD|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	8.37414e-61
NC_010296.1|WP_012265137.1|1650408_1651443_+|PstS-family-phosphate-ABC-transporter-substrate-binding-protein	gnl|CDD|270372	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.93467e-123
NC_010296.1|WP_041803942.1|1656993_1657485_+|DUF29-domain-containing-protein	gnl|CDD|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	6.83886e-64
NC_010296.1|WP_012265136.1|1648687_1649809_-|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl|CDD|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	2.13822e-121
NC_010296.1|WP_012265141.1|1655352_1656270_-|ROK-family-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.40507e-73
NC_010296.1|WP_002797834.1|1662160_1662727_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.69465e-41
NC_010296.1|WP_002739408.1|1653879_1654518_+|LON-peptidase-substrate-binding-domain-containing-protein	gnl|CDD|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	4.25234e-67
NC_010296.1|WP_012265148.1|1661531_1661999_-|CBS-domain-containing-protein	gnl|CDD|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.95878e-54
NC_010296.1|WP_002797854.1|1646516_1647410_-|phosphate-ABC-transporter-permease-PstA	gnl|CDD|273373	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	3.38429e-93

Protein sequences

>NC_010296.1|WP_012265141.1|1655352_1656270_-|ROK-family-protein
MVKTVIGVDLGGTAIKIGKFDQEGNCLESLTLPTPQPATPKEVALTIHQGICQVNLDKSCQAIGVGTPGPADAQGRIAKIAINLAGWRDIPLADWLEESTGMPTILANDANCAGLGEAWLGAGKRFQNLILLTLGTGVGGAIILDGNLFVGSKGTAAELGLITLNFDGPLCNSGNRGSLEQYVSRQAIRRMTGKEPKQLAELAEKGDREALEFWQRYGCLLGAGIASLLYVLTPEAVIIGGGISASAKFFFPSLLTEIEGRVLPSSREGLEVLTAELGNRAGMVGAAKLAWQLLDLRKESIMGGD
>NC_010296.1|WP_002760023.1|1654748_1655351_+|Crp/Fnr-family-transcriptional-regulator
MLLTYNPSVSPFREDYSESRRLHFYDRGENIPLVVDGVWQVYRGMAQLSQVSESGEEILLGWAHSSHFFGLNLTHLESYHARALSELYLKWYTIAEVENSAELTRMMLNQMIRRQQQTESLLAIAGLKRVEERLQQLLQLLKREMGEPIAQGSRLKIRLTHQNLANAIGTTRVTVTRLLGEFQRQGAVSSDCDRHLIIHD
>NC_010296.1|WP_002739408.1|1653879_1654518_+|LON-peptidase-substrate-binding-domain-containing-protein
MATSSIAVRELPLFPLPEVVLFPGRPLPLHIFEFRYRIMMNTILEEDRRFGVLMVDPATGEIAKVGSCAEVVRCQRLPDDRLKILTIGQQRFRVLEYVREKPYRVGLVEWIEDVPTTQDLRPLAKEVDRLLRDVVHLSAKLTAQKIELPDDLPSLPLELSYWVAGNLYGVAGEQQALLEMLDTVSRLQRESEILTSTRNHLAARTALKDALN
>NC_010296.1|WP_158303502.1|1653615_1653765_+|hypothetical-protein
MFKDLYHAVSALRGGVGSGVWGVGCIEGGCGVWGVGCGVWGVGCGVWGE
>NC_010296.1|WP_012265139.1|1651866_1653408_-|ferredoxin--nitrite-reductase
MVQAPEKDGTTLNKFEKFKAEKDGLAIKDELDHFAQIGWEAMDKTDLEHRLKWVGVFYRPVTPGKFMMRLRVPNGILSSEQMRVLGEIVQRYGDDGNADITTRQNLQLRGIRIEDIPDIFQRLKSVGMTSVQSGMDNVRNITGSPMAGLDADELIDTRELVQKVQDMITNYGEGNYQFSNLPRKFNIAIEGGRDNSVHAEINDIAFVPAYKEGELGFNVVVGGFFSAKRCEAAIPINVWVRPNQEVVDLCRAILEVYRDNGLRANRQKSRLMWLIDEWGIEEFRTRVANQLGYPLATAAEKDAIDWEKRDHLGVFPQKQEGLSYIGFCVPVGRLFADDMFDLARIAEVYGSGELRLTVEQNVIIPNIAAENMPTLLSEPLLAKFTPNPTPLQRALVSCTGAQFCNFALIETKNRAVDLISQLDAELNIPRGVRIHWTGCPNSCGQPQVADIGLMGTKARKDGKTVEGVDLYMGGKVGKDAHLGSCVQKGIPCEDLKSVLTSILIEQFGATPKG
>NC_010296.1|WP_012265137.1|1650408_1651443_+|PstS-family-phosphate-ABC-transporter-substrate-binding-protein
MLGIFTQLSRPTKVVAIVLGTALILPACANINPQDLKPIKIDGSSTVAPITDKVLEDFKANTPNKALADVKIDANISGTGGGFRKFCAGETDINNASRPISVEELKECDANKVRFIELPIAFDALTVVVNPQNNWLDDISTRELKTIWEPAAENKIKRWNQINPAWTDRPITLHGPGKDSGTYDFFSDVINGKDASRGDFNFSEDDQALVNAVSQDPNALGYFGHAYYEQNRDKLKALKVNGIEPTRSNVEDSKYQPLSRPLFIYVNAQKAQENPALEKFVEHYLDRVPNLLDNIGYIPLPDEAYHLARVQLQKFEVGTVFEGKPQPNLTIGELLRKQAQFEAK
>NC_010296.1|WP_012265136.1|1648687_1649809_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MLSKNRTHLLTALSLATLTATLTACGGGDTAGTSGEGSNRIAQVPLQGEVALNGAGASFPAPLYQNWFVTINQLFSKLLINYQSTGSGAGVEQFIQGTIDFGASDVAMSDEDMARVSRGVLLLPMTAGSIVMAYNLPGVEGLKLSREAYVGIFLGTITRWNDAKIAADNPDLKLPNEEITVVHRADGSGTTGVFTKFLSAVSPEWKKSIGEGKAVQWPTKKGKFLGGRGNEGVTALIQQNQGSIGYIEYGFAKNNKLPMATLQNQAGQFVIPNETNAAATLATVELPENLRAFIVDPPGENSYPIVTYSWMLVYKKYNDPQKALAMEAMIEFGLNQGQEQSAALGYIPLPKNVRERVAAAADVIYPDYTINVD
>NC_010296.1|WP_012265135.1|1647633_1648593_-|phosphate-ABC-transporter-permease-subunit-PstC
MSAPTVSPDSNFKERPESEKILDKGFVGLTTAFAIAIGVILLLIALVIFIRALPAIQTFGLGFLTSSAWNPVRGREEFGVLPVIYGTLVSSLIALLIAVPLGIGSAIFLSEDFIPLNARTILVFLVQLLAAIPSVVYGLWGIFVLIPILRPLGNWLNGNFSWIPLFSTPLGGPGMLPAGVILAIMILPIIIAISRDSLAALPPDLRQASLGLGATRWETIFRVLIPAAFSGIVGGIMLALGRALGETMAVTMIIGNSNRISASILAPANTIASLLANQFAEASGMQVSALMYAGFVLLVLSLVVNIFAELIVNRVKAKY
>NC_010296.1|WP_002797854.1|1646516_1647410_-|phosphate-ABC-transporter-permease-PstA
MDSANLGNNLKKKPSSPRSLLGTIMTVLSGLCLAVTVIPLFAVLGFVFVQGVGRLNANLFTKLPPPPGLGGGGIANAILGTIIVVALATAIAVPIGVLAAVYLSEFSGDNKLAQGVRFATNVLAGVPSIIVGVFAYGLLVAPLFGEGTALLGFSALAGSIGLAVLMLPTIIRTTDEALKIVPQDIRWAAMGLGAYNYQTVLKIVLPAAVPAILTGVTLAIARAAGETASLIFTALFSNFWPRGVFEPIATLSVLVFNFATAPFAPQQQLAWAGALILVLLVLVTNILSRLATRQKTY
>NC_010296.1|WP_012265134.1|1645504_1646308_-|phosphate-ABC-transporter-ATP-binding-protein
MLTNRTTQSTATVLKVDKANIYYGNYRAVRDVSINIPKNKVTAFIGPSGCGKSTILRCFNRLNDLIHGFRIDGKVFYHNQDIYSQEVDPVEVRKYIGMVFQRPNPFPKSIYDNVVYGARLNGYKGDLDELVETSLRRAALWEEVKDKLKESGFSLSGGQQQRLCIARAIAAQPEVLLMDEPCSALDPISTLKVEELMHELKERYTIIIVTHNMQQATRVADLTAFYNAEPTDKGGKIGYLVEFDHTDKIFGDPQEQATKDYVSGRFG
>NC_010296.1|WP_041803942.1|1656993_1657485_+|DUF29-domain-containing-protein
MMNITIPNLYDSDYQLWLESTINQLRQGDFQAVDWPNLLEELADLGKSERRALESLLTRLLEHLLKLTYWQSQRDYNQAGWKKEIRNFRIQIKKILKDSPSLKSYLREILPECYLDARNLLIDETELDASIFPLEVLASLEEILAENWLPDWEAIGNDSEKCN
>NC_010296.1|WP_041803944.1|1657495_1657963_+|DUF29-domain-containing-protein
MMNITISNLYDSDYQLWLESTINQLRQGDFQAVDWPNLLEELADLGKNNRRALESLLTRLLEHLLKLTYWQSQRDYNQAAWKGEIRTFRKQIKKILRDSPSLKPYLSEILEECYSDAREIIIDITQLDASIFPVELLASLEEILDQNWLPDFRET
>NC_010296.1|WP_002747647.1|1658001_1658382_-|hypothetical-protein
MSRRKKKFPCGHKGYGQVCHHCAQLDAAWEERKRQKNAWEATFSQDPIDLRELPKNVVLKAREILQGLQNHRNYRDFHGKRLRHDRFIISIPVTRNYRLICRDHGNLLVPEAVISHEDYNVCKPGR
>NC_010296.1|WP_012265145.1|1658724_1659777_-|phosphotransferase
MTTFLASLNILPSSSPAANFRTGEWTFPTLYSTLAPAALADLVFSRYEIDVPKNCQFWHRGLSDVYLLETLKTPYILRVSHCHWRSKMEIDFELELLDYLDRSQVPVAAPIRTKNGNLSVEIKAPEGKRYAVLFPYAPGGIAIGDIDIEQAYHLGAIVANLHRVTADFQPLAYRHPLNLKYLLDDSLQIIAPFLHQRPSDLDCVLETIGEIEEETAKLPTESPYWSICWGDPHSGNVHITPDNQMTLFDFDQCGYGWRVFDIAKFLQVSLQSGLNRQVRHGFIQGYDETVPLTDGELSCLQYLTQAAYIWSWSISLNNLRLTDYSRLCANYFSSRLAILKRLRTQEWELF
>NC_010296.1|WP_012265146.1|1659797_1659995_+|hypothetical-protein
MDNARIILFYSPHILQIGSIAPYISLHSSDLKEGVGCGVWGVGKETSFICGGENFFIGTDSLPHS
>NC_010296.1|WP_012265147.1|1660100_1661144_-|LD-carboxypeptidase
MKRRQFFINSALTAVSFSLITRKVISNNFPLIKPPHLQPGDGVGIISPAGATFKEDDLNIVIEAVKALKLVPKVGQHALDRYGYLAGKDRERAADINQFFADDNIALILPIRGGWGSARLLPYLDYDLIGRHPKIICGFSDITSLLLAIYAKTGLVTFHAPNGFSSWRTAQTESFRQVLFSGEKLTFRNIPDPDDANRLMRVKNRIQTITKGQAKGKLIGGNLTTLASIAGSPYLPDFTSAILFLEDIGEDIYEIDRLLNQLKLAGILDNLAGFIFGQCSNCSADSDYGSLTLEEVIREYIQPLKIPACLGLMIGHLEIIETLAIGIAVEFDANRGTITMLESAVSK
>NC_010296.1|WP_002760030.1|1661198_1661489_-|hemolysin-XhlA-family-protein
MNQSQETVTYSLETILTRMEGKIDSLQKDVTDLKVGQAVLTGKVEGIENRLNSLEGNQKYQVWALIVLLAGAIVKTFFFPRSPLNPPLIRGASDNF
>NC_010296.1|WP_012265148.1|1661531_1661999_-|CBS-domain-containing-protein
MTKTVADIMTPNPITVTANTSLSEAVKILAEKRFSGLPVVDDNMRLIGVISETDLMWQETGVEAPPYIMLLDSVIYLQNPSRHEKLLHKALGQTVGEVMTDKPISITADRPLKEAASLMYDRHVRRLPVIEEETHKVIGIITRGDIIRDMAKSEA
>NC_010296.1|WP_002797834.1|1662160_1662727_+|Uma2-family-endonuclease
MIAQPQYPERMTPEEYLEWEATQECRHEYIDGEIIAMTGGSLPHNDITLNFYRTLYSHLRPRGCRVNVSDAKVQANNSRYFYPDLVISCDFRDRESRNFIQHPQVIIEVLSPSTGNYDRTKKLQYYRQIPSLQEYVLVDPESISVEVYRRGEDKIWFYCAYSQGEEIILSSLDFHCAIELLYEGISFD
>NC_010296.1|WP_012265149.1|1662798_1663647_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MLPPLLVLDPLLENWLREDLGRGDRTTQAIFFGHAKIGQASWIAKEAGVIAGLPVAERVFQLLNPTIHFTPTVAEGEFCPKSKVIAEIEGSLDALLIGERVALNLAMRLSGIASATRQYVQKIADLSTRLVDTRKTTPGLRILEKYASGIGGAINHRLGLDDAIMIKDNHIQAAGSIEEAVRRVRQNMPYPLTIEVETSQLEEVNQALQQQVEIIMLDNMDLEMMQTAVEMIRNFNSKTKIEASGNITLDRIRNVAETGVDYISTSAPITRSTWLDISMRID

Crispr_ID: NC_010296_13

• CRISPR_ID: NC_010296_13
• CRISPR_location: 1760800-1760934
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_13

Consensus_repeat	Method
AATGATTGAATGAATACTATGATTGTGTTGTCTTCAGCA	CRISPRCasFinder

spacers of NC_010296_13

>13.1|1760839|57|NC_010296|CRISPRCasFinder
ACCTTTTATCAATAATCAATCACAGTCCATCACATAATTAGTCTCAACTGTGATTGA

CRISPR arrays and Neighbor proteins around NC_010296_13

CRISPR arrays

The CRISPR arrays of NC_010296_13

>merge|NC_010296|13|1760800-1760934|CRISPRCasFinder
AATGATTGAATGAATACTATGATTGTGTTGTCTTCAGCAACCTTTTATCAATAATCAATCACAGTCCATCACATAATTAGTCTCAACTGTGATTGAAATGATTGAATGAATACTATGATTGTCTTGTCTTCAGCA

>NC_010296|13|11|1760800-1760934|CRISPRCasFinder
AATGATTGAATGAATACTATGATTGTGTTGTCTTCAGCA	ACCTTTTATCAATAATCAATCACAGTCCATCACATAATTAGTCTCAACTGTGATTGA
AATGATTGAATGAATACTATGATTGTCTTGTCTTCAGCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002759244.1|1757056_1757224_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265227.1|1761705_1762713_-|DnaJ-domain-containing-protein	unknown	unknown	gnl|CDD|237667
NC_010296.1|WP_002738818.1|1761231_1761576_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002798373.1|1758655_1759699_+|dipeptide-epimerase	unknown	unknown	gnl|CDD|239435
NC_010296.1|WP_002798361.1|1749287_1749551_+|BrnA-antitoxin-family-protein	unknown	unknown	gnl|CDD|372110
NC_010296.1|WP_012265231.1|1766563_1768075_-|hypothetical-protein	unknown	unknown	gnl|CDD|227621
NC_010296.1|WP_012265233.1|1771456_1772134_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|378924
NC_010296.1|WP_002798367.1|1751466_1751730_-|DUF3146-family-protein	unknown	unknown	gnl|CDD|371480
NC_010296.1|WP_002798388.1|1774492_1775386_-|ferritin-like-domain-containing-protein	unknown	unknown	gnl|CDD|153097
NC_010296.1|WP_012265219.1|1751816_1752806_-|DUF389-domain-containing-protein	unknown	unknown	gnl|CDD|224721
NC_010296.1|WP_002798371.1|1755585_1756929_-|adenylosuccinate-synthase	unknown	unknown	gnl|CDD|234904
NC_010296.1|WP_012265232.1|1768098_1770336_-|MASE1-domain-containing-protein	unknown	unknown	gnl|CDD|283013
NC_010296.1|WP_012265225.1|1757284_1758448_-|LptF/LptG-family-permease	unknown	unknown	gnl|CDD|367632
NC_010296.1|WP_012265224.1|1755000_1755558_-|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl|CDD|235534
NC_010296.1|WP_002798374.1|1759701_1760745_+|DUF1611-domain-containing-protein	unknown	unknown	gnl|CDD|225902
NC_010296.1|WP_012265235.1|1773264_1774329_-|pentapeptide-repeat-containing-protein	unknown	unknown	gnl|CDD|224276
NC_010296.1|WP_012265234.1|1772325_1773078_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|226983
NC_010296.1|WP_002737320.1|1770804_1771437_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NC_010296.1|WP_002798377.1|1765012_1766014_-|pentapeptide-repeat-containing-protein	unknown	unknown	gnl|CDD|224276
NC_010296.1|WP_012265217.1|1750150_1751212_-|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl|CDD|234761

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012265227.1|1761705_1762713_-|DnaJ-domain-containing-protein	gnl|CDD|237667	PRK14299, PRK14299, chaperone protein DnaJ; Provisional.	1.54442e-67
NC_010296.1|WP_012265232.1|1768098_1770336_-|MASE1-domain-containing-protein	gnl|CDD|283013	pfam05231, MASE1, MASE1. Predicted integral membrane sensory domain found in histidine kinases, diguanylate cyclases and other bacterial signaling proteins. This entry also includes members of the 8 transmembrane UhpB type (8TMR-UT) domain family.	4.32816e-34
NC_010296.1|WP_012265233.1|1771456_1772134_-|alpha/beta-hydrolase	gnl|CDD|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	4.327e-19
NC_010296.1|WP_002798373.1|1758655_1759699_+|dipeptide-epimerase	gnl|CDD|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	2.43454e-107
NC_010296.1|WP_002798361.1|1749287_1749551_+|BrnA-antitoxin-family-protein	gnl|CDD|372110	pfam12441, CopG_antitoxin, CopG antitoxin of type II toxin-antitoxin system. CopG antitoxin is a member of a type II toxin-antitoxin system family found in bacteria and archaea. Most antitoxins encoded by the relBE and parDE loci belong to the MetJ/Arc/CopG family of dimeric proteins which bind DNA through N-terminal ribbon-helix-helix (RHH) motifs. The toxin for CopG proteins falls into the family BrnT_toxin, pfam04365.	4.30014e-21
NC_010296.1|WP_012265231.1|1766563_1768075_-|hypothetical-protein	gnl|CDD|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	3.32204e-24
NC_010296.1|WP_002798367.1|1751466_1751730_-|DUF3146-family-protein	gnl|CDD|371480	pfam11344, DUF3146, Protein of unknown function (DUF3146). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	7.16407e-53
NC_010296.1|WP_002798388.1|1774492_1775386_-|ferritin-like-domain-containing-protein	gnl|CDD|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	4.88261e-06
NC_010296.1|WP_012265219.1|1751816_1752806_-|DUF389-domain-containing-protein	gnl|CDD|224721	COG1808, COG1808, Predicted membrane protein [Function unknown].	1.05629e-49
NC_010296.1|WP_002798371.1|1755585_1756929_-|adenylosuccinate-synthase	gnl|CDD|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NC_010296.1|WP_012265225.1|1757284_1758448_-|LptF/LptG-family-permease	gnl|CDD|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	2.28813e-75
NC_010296.1|WP_012265224.1|1755000_1755558_-|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl|CDD|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	5.2815e-54
NC_010296.1|WP_002798374.1|1759701_1760745_+|DUF1611-domain-containing-protein	gnl|CDD|225902	COG3367, COG3367, Uncharacterized conserved protein [Function unknown].	1.71141e-96
NC_010296.1|WP_012265235.1|1773264_1774329_-|pentapeptide-repeat-containing-protein	gnl|CDD|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	5.23768e-20
NC_010296.1|WP_012265234.1|1772325_1773078_+|Uma2-family-endonuclease	gnl|CDD|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.93639e-23
NC_010296.1|WP_002737320.1|1770804_1771437_+|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.15863e-73
NC_010296.1|WP_002798377.1|1765012_1766014_-|pentapeptide-repeat-containing-protein	gnl|CDD|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.65336e-33
NC_010296.1|WP_012265217.1|1750150_1751212_-|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl|CDD|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0

Protein sequences

>NC_010296.1|WP_002798374.1|1759701_1760745_+|DUF1611-domain-containing-protein
MTNYLTPDKKVAILLHEGIKGTRGKTGLSYLRYGKAQVVAIIDAENAGSALKEVAGIDRPLPIVASVREALTYHPDTLLIGIAPSGGILPPHWLEEIKEGVKAGLSLVNGLHTPLKPLFPQLKPDQWIWDIRLEPQDLKIGQARAKNLTCQRILTVGTDMSVGKMSTSIELHRVAPEKGLKSQFLATGQGGIMIAGKGVPLDAVRVDYAAGAIEALVLESAENNDILFIEGQGSLLHPGSTATLPLMRGSQPTGLILVHRAGQIHINDLPDILIPPLTEVIKLYEMTASAGGSFGEVKVKGISLNTFHLSPEAAVQAIETVQEETGLFCTDVVRFGGQGLLSVISKQ
>NC_010296.1|WP_002798373.1|1758655_1759699_+|dipeptide-epimerase
MLLNWQTFTIHKRVPLRISRGTTSENTNIWLKISEENIEGWGEASPFDITSEEKKPDKILQELNSIAPILQSFHPCQRQEIEKILWQNQISSATRAAIDTALHDWLGKKANLPLWQIFGLDRSLIPPVSVTIGLNSPENVQKRLLDWLEIGDFSLLKVKLGSPDGIEADRAIILAIKEIVPHLPLTVDANGGWQFSDAVKMCQWLEEKGVIYVEQPLSVGQERDLIDLYQKSPLPIFVDESCFSSQDIPKLADRVHGINIKLMKAGGLAEVQRMIHIAQACRLQIMFGCYSDSSLANTALAHLGPLVNYLDLDSHLNLRDDPFTGLSLEKGRLQPNNSPGLGVSLRI
>NC_010296.1|WP_012265225.1|1757284_1758448_-|LptF/LptG-family-permease
MIKKKISYWVNGGIALIDRYLISQLLPPFLFSVGLFASLGVAIGNLSDLANQVVDANLPLASALEILLLKVPEFVTYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNEYVVPNANYRATEILVQKINKEASFWKNKDFYYPDYEIKTLENGTINRNLISLFYAEQFDGEKMKTVTVIRWLKQELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYRQVIPFKAEKIALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDDKRVRFFQVRIQQKIAFPFVCIVFATIGCALGSLPQRISRGTSFGLSVAIVFLYYLLNFLVGSLGLTATLSPFLAAWLPNFFGFGLGLWLLWRLNG
>NC_010296.1|WP_002759244.1|1757056_1757224_-|hypothetical-protein
MFPFFFNTCGSTSRQECQERKLTFLKWMRDDLETRLAGLNAAIETIERQISREGQ
>NC_010296.1|WP_002798371.1|1755585_1756929_-|adenylosuccinate-synthase
MANVIVIGAQWGDEGKGKITDLLSRSADVVVRSQGGVNAGHTVVVEGQTFKLHLIPSGILYPDTECIIGSGTVIDPSVLLKEMAQLHALNVTTDNLYISQTAHVTMPYHRLLDQASEEKRGKYKIGTTGRGIGPTYADKSERIGIRVIDLINTENLRQKLEWTINYKNVILEKLYNLPPLDAKTVIEEYLEYAEILRPHVVDSSLKIYEAIRKRKNILFEGAQGTLLDLDHGTYPYVTSSNPIAGGACVGSGIGPTVIDRVIGVAKAYTTRVGEGPFPTELEGEIEQLLCDRGAEFGTTTGRRRRCGWFDAVIGRYAVRINGLDCLAITKLDVLDTLEEIKVCVAYQLDGQTCRHLPSSAGEFARCQPIYRTMPGWQQPTSDCRSLEDLPKQALDYLKFLGAIMEVPIAIISLGASRDQTIIVEDPIHGPKRALLDENGSPWDNHEF
>NC_010296.1|WP_012265224.1|1755000_1755558_-|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MQVSVECQKRPENINPRALRRQGLIPAVLYGHNGTESISLVVGEKAALTLLKKASVNNTLVDVNVPEMPWTGKALIQEVQSHPWKRNLYHLSFFSVSAHGKLDIVVPIKAIGEAIGTKQGGLIEQFVNEVNVSCIADNIPEVIEFDVSEIGVGQSLLVGDLKMPEGVTLKDDPHTTVFAIVAAKR
>NC_010296.1|WP_012265219.1|1751816_1752806_-|DUF389-domain-containing-protein
MTRKERPHSWFSRKPLTWQQSRTMWRDLWLEASLDFPYLALIVSSCAIATFGLVANSAAVIIGAMIIAPLMLPIRSLAFGGLIGSWRLIRKSALAILVGTIIALAIAWLLGLLIGISEFGSEIQARSQPNLLDLGVAITAGAISGYAKIEPKISGTLAGTAIAVALMPPVCTIGLGLSQGNWLLSLGATLLYITNLLGIALSCLLVFLLAGYSNFHRARNALILTSILTAVLLIPLGISFATLANQARLERLLKKALLQRTITFQRAELLESSINWLKQPPRVRLVVRTAESITPRQVELLEEFITKEMGRPFQLNVLVSKVNEVTAPE
>NC_010296.1|WP_002798367.1|1751466_1751730_-|DUF3146-family-protein
MSGDNRPESTAYVRIIKQSWQTGKLEGEVRTEQYQWRFQWHFLQGKLSVQPSLGRALIFEPLNRFLERYDYQLEPGGDYEFTVRSKF
>NC_010296.1|WP_012265217.1|1750150_1751212_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MTQGQKVSVGIVGASGYGGVQLVRLLKEHPLVELAYLGGDSSAGKPYSDLYPHLGHSINLNVEAIDLEIIASRCQVVFLGLPNGLACDLAPPLLAKGCKVLDLSADYRFTSLDTYSKWYGKERQDQAIASTAVYGLPELYREDIKNASLIGCPGCYPTASLMAISPLLKQGLIVPETTIIDAKSGTSGGGRQAKINMLLAEADSSIGAYNVAGKHRHTPEIEQICGDLAGHEVRVQFTPHLMPMVRGILSTVYATLRDPNLVRDDLITIYNAFYRASPFVKILPGGVYPQTKWACGTNLCYLGIEVDPRTDRVIVMSAIDNLVKGQSGQAVQCLNLMMGWEESLALPQMCFYP
>NC_010296.1|WP_002798361.1|1749287_1749551_+|BrnA-antitoxin-family-protein
MTENKSKSLPKFNSTEEIVNFFDSHDLGEFESELPEVNFDVDLKKKHYLVAIDADLMVKLLEVAREQQISVEMLVNSWCRDKLIIAS
>NC_010296.1|WP_002738818.1|1761231_1761576_+|hypothetical-protein
MLTPSDSKLSKQQQILSAVSEEEQLKQQRIQEVLLLIDSLFQREETTFRIIIDCLYDVGSLNLINKKFHSRHLNFIMKAIARFSKPIFRIYALYWVKKNSPKLITNWLASKVKF
>NC_010296.1|WP_012265227.1|1761705_1762713_-|DnaJ-domain-containing-protein
MPAADYKDYYAVLGVGKTASAEEIKKAFRKLAVKYHPDRNPNDKSAEERFKEISEAYEVLSDSEKRQKYDQFGQYWQQAGRSNWPGGNPGVDFGSAGFDFSQYSTFDDFINELLGRMGRSGGTRPGSHSYGTPGGGFGDFSNFNDFAGARTPPQAVTSGISTAKLRLTFAEALRGVQKRVNLAGEMIDIKIPPGTKTGNRLRVRGKGLIDPLSKQRGDLFLDVELEPHPFFAFEGDNLTCEVPITPDEAVLGTAIEVPTPDGLVTVKVPAGIRSGQSLRLRGKGWIDNKGQRGDQLVKIVIDTPKELTAIERELYEKIKSQRTTDPRRHLRQVQI
>NC_010296.1|WP_002798377.1|1765012_1766014_-|pentapeptide-repeat-containing-protein
MSSNALTNREHLIELYNRGERNFAEVRLSGVNLKRQCLNQINLSHSYLKRANLAEACLINANFKDASLEEVNLSKACLIDANLTKADLSGANLRQSQLSGAILSNTVLKKADLSSACLIHSSLLFAQLLKANLEAANLTSATLTHAMAGKANLKRAILTRAILSSANLSHANLKEANLIRAYLYQANLENCHLQYADLSYADLRGADLRGADLRYANLEGANLTGANLNCSDFEGANLTGADLSKTDANKANFRQANLTGCNLLGANLASANLSGANLHQAGLLLSYLVGSNLKRANLKQANLIGAILTENNLLSASLEETILPNGSRGNLLS
>NC_010296.1|WP_012265231.1|1766563_1768075_-|hypothetical-protein
MLTRQSGVRFALGLLIIFNIFYFVHLAYYSYVWHDESLVLLHLSGYTPEQLINYLFDGQIKSTEQLWQFQGVNSVKGFPDTLASLYTSSNYDLPLYYSSLWFLARLLGNSYLVLRGFSVIIWFGILGSFYHLALTLFKNKNAALIATTLIFFSPRFTGYALGIWEYGLYVFCSILSSWLFLKAIDSSQPKKDWFFYSLSLIAGLYTHVFFIFVLVVHSLYFLLQLNYFNFLTKKYYSISLLASLWIYSIWLTRIFTGRFTIFGWSKGSLPLEVLWQRWVTMIARLFYNFSLANPTINPIIEYCLIILVIISFIYLSKKADKKVFTLIILLTIIPFFSLLAWDLIRGFRYTAVGRFYLPSFLGMLLAVTFLLSKGLQQRQGWAKILLILLLVFGLIAKIPYPPPAARYVGYGSNIPNAYTMINRSQKPLIISEHWLDTLPLIHTTDAKTKYLFVQSNPRVSIPSLKNQFTDIYLLNPSPSLRQYLDDQSIQLSPTENQAFWRID
>NC_010296.1|WP_012265232.1|1768098_1770336_-|MASE1-domain-containing-protein
MLRISSDRSKILLVALVYLGVGWLGYLCLNLGSRPAPIWMSAGIGLTAVFLGGKRLVLGVFIGDLLLTFFLAASWPIALFSAIGSSLSALLGAQFLHYLRFSATLQRIRDILLLVFLAALLASAVNATIDTFARSWLNTWDWRQFGQSWGMIWLGDSTGILMTTPLLLRFFFNHHSLREPRQPQRLGEALLCLSLLTVVTSVVFGDQPNFLNPDWSMVQYLEYLPFPFVVWAAMRFQTWGAVIANFLVSILALMGLARGISPFILQAPDYTRGVLILQIFLVIVMSTSLFLSAAISERQQIDRALNETLEREHLVTQVALKVHQSLDIDQVLNTIVEEIRNFLDADQVYIGHCQERGWSKVIAESRRPEIPSLMGWFPEPELLEELGQLFSLDKLIIADNTAKVQTLPTLKGYYEYLQVKSSLVLPLTVNNQHLGALVVHQYSHPRHWQKSEVKLLEQLATQVCIAIGQAQLYQRVQSLNNNLEREVAARTLELREKVREIQRLCEMKTVFLQAVSHDLRTSIMGLVMLLKNLQCRQTEKVTISRAMLDQVVRSCDRQLTLINALSENHFAEERPLILHRQPLSLKEQVEIWLKDWQKDFDLYQATFINLLPDDLPAIDADPCQLRSVFEQLLNNALKHNPSPIQLALDARIDQDMLYCTLSDNGIGMDEEQCQHLFHLYVRNLHNQHLTGIGLGSYQCRQIIEAHSGRIGVKSTPRVGSQFWFSLPLTHQNSRVIKQELVNSNQ
>NC_010296.1|WP_002737320.1|1770804_1771437_+|response-regulator-transcription-factor
MRILIVEDDPLMQLGLEQALGEQPDFEIVGQASDGLAGVQLALSLRPDLVVMDIGLPRLDGIAATKQIKEGLANVHVVMLTSHTLQQEVIAALASGADAYCIKGASLDRLLAAIEAAKDGATYLDPQIARLVMDNLKPPAVQPNPNLALLSEREMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGIV
>NC_010296.1|WP_012265233.1|1771456_1772134_-|alpha/beta-hydrolase
MNRINNIVLVHGFWADGSSYNQITAQLLAEGYVAIAVQNPLTSLADDVAATKRILNRIEGQCILVGHSWGGTVITEVGNDEKVSGLVYIAALAPDAGESMVDLFSEYETPSQYFQEQEGFIWISQEGIEKILANDLPAEKAALIYATQTPAAASLLTAKTTTTAWRNKPNWYIVSSQDQAVPPELQFNLAERMGAKTVVLASGHVPTISHASEVLEVIREASNRG
>NC_010296.1|WP_012265234.1|1772325_1773078_+|Uma2-family-endonuclease
MTIAQSLPLVESHVNPEIIFPQGQFWSDEPPLESNLHLQQIILLIQCLEWWWREREDYFATGNLTIYYSPNQKKSEFCRGPDFFVVLGTNSNPNRRSWVVWREEGKYPNLIIEILSDSTAKVDREEKKQIYQDIFRTPDYFWFDPESREFQGFTLISGQYQPIAPNPQGWLWSQQLGLYLGLSANKLRYFTPEGELVPTPAEAAQQAENRAVEAENRVLEAESQVQQEKQKAAKLAAKLRELGIDTEENL
>NC_010296.1|WP_012265235.1|1773264_1774329_-|pentapeptide-repeat-containing-protein
MRLLAAFDRYPDSVSLTLKPVATDSQKFDLYLTLHLQAQIQSLLGGEIKWGLKGGKLDFVLVNCHLTPNPLSSQELYINRINNHQWRLSFKSPQSIFTGAIERINLGTVSVEEEPYRLTVQFSLTAADICITETSGLWKHDISPNKHSILERKLAFFLMENQFDAFLSRISLGSSQVELDTVLVEPKPAASENLEKLQTQIEGIYAAVSDDFLELAQLAELDPLRDFTGANLLAAELSGISLGMANLYQANLRGANLTDADLSEINGSHASFRGADLSGALLANADLSYADFYRSSLALANLIGSNLEGANLVEVNITQANFSGAKVKGTKFTDNVGMTEELRENLRLRGAFCD
>NC_010296.1|WP_002798388.1|1774492_1775386_-|ferritin-like-domain-containing-protein
MTVAYPRKFKKTMSARDIMKRVISDREIHLVTLNRYRYNEQRSCKDLTELIETLDGQPKELIQDLSHHVADEARHAYWLTDLLIELGADVGKPPGLSYIDEFERLLDQDQFQGEEQREDGLIAALAAINVTEKRGCEYFAAHIYALKEGEQTPENLKIRETIAKIFPEEAGHVRWGNRWLAKIAQKSPEHRQKVEKAKAKYSAIEQAAYESGMDITLGAELRRVGHLMEIAATMPLWERPQYLMERLPQSLLDPKLQLFRVEAAQKAWNRDPKMFMERFLPMFFNADDNIGKKEKVN

Crispr_ID: NC_010296_14

• CRISPR_ID: NC_010296_14
• CRISPR_location: 2288925-2289064
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_14

Consensus_repeat	Method
GCTTTTTCCCCAATTTCTGTCACTGATTCTGTAATAGTTTCCCCGATAGCCGC	CRISPRCasFinder

spacers of NC_010296_14

>14.1|2288978|34|NC_010296|CRISPRCasFinder
CGCTGTTTCTATAACGGGATCCACCGTTTCTTGA

CRISPR arrays and Neighbor proteins around NC_010296_14

CRISPR arrays

The CRISPR arrays of NC_010296_14

>merge|NC_010296|14|2288925-2289064|CRISPRCasFinder
GCTTTTTCCCCAATTTCTGTCACTGATTCTGTAATAGTTTCCCCGATAGCCGCCGCTGTTTCTATAACGGGATCCACCGTTTCTTGAGCTTTTTCCGCAATTTCTGTCACTGATTCTGTAATAGTTTCCCCGATAGCCGC

>NC_010296|14|12|2288925-2289064|CRISPRCasFinder
GCTTTTTCCCCAATTTCTGTCACTGATTCTGTAATAGTTTCCCCGATAGCCGC	CGCTGTTTCTATAACGGGATCCACCGTTTCTTGA
GCTTTTTCCGCAATTTCTGTCACTGATTCTGTAATAGTTTCCCCGATAGCCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012265651.1|2295984_2297013_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl|CDD|235066
NC_010296.1|WP_002799077.1|2297037_2298402_+|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|143418
NC_010296.1|WP_012265637.1|2280025_2280883_+|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl|CDD|184410
NC_010296.1|WP_012265649.1|2292767_2294420_+|CHAT-domain-containing-protein	unknown	unknown	gnl|CDD|366133
NC_010296.1|WP_012265638.1|2280883_2281714_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|274350
NC_010296.1|WP_012265648.1|2290009_2290993_+|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl|CDD|180982
NC_010296.1|WP_002738222.1|2300788_2301103_-|DUF1825-family-protein	unknown	unknown	gnl|CDD|370158
NC_010296.1|WP_002799081.1|2301355_2302105_-|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl|CDD|184841
NC_010296.1|WP_012265643.1|2284405_2284642_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265640.1|2281988_2282837_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_158303511.1|2294426_2294591_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265636.1|2278566_2279910_+|cytochrome-c-biogenesis-protein	unknown	unknown	gnl|CDD|214387
NC_010296.1|WP_012265644.1|2284759_2285116_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002799052.1|2277787_2278516_+|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl|CDD|280792
NC_010296.1|WP_012265642.1|2283416_2284340_+|UPF0104-family-protein	unknown	unknown	gnl|CDD|223469
NC_010296.1|WP_012265650.1|2294635_2295793_-|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl|CDD|213362
NC_010296.1|WP_002799079.1|2299545_2300658_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265641.1|2282874_2283378_-|hypothetical-protein	unknown	unknown	gnl|CDD|237247
NC_010296.1|WP_012265645.1|2285230_2288557_+|AAA-like-domain-containing-protein	unknown	unknown	gnl|CDD|238121
NC_010296.1|WP_080507082.1|2291116_2292526_-|IS4-family-transposase	unknown	unknown	gnl|CDD|373239

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002799081.1|2301355_2302105_-|di-trans,poly-cis-decaprenylcistransferase	gnl|CDD|184841	PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional.	0
NC_010296.1|WP_002799077.1|2297037_2298402_+|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl|CDD|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NC_010296.1|WP_012265637.1|2280025_2280883_+|DNA-formamidopyrimidine-glycosylase	gnl|CDD|184410	PRK13945, PRK13945, formamidopyrimidine-DNA glycosylase; Provisional.	3.30686e-169
NC_010296.1|WP_012265649.1|2292767_2294420_+|CHAT-domain-containing-protein	gnl|CDD|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	7.51871e-12
NC_010296.1|WP_012265638.1|2280883_2281714_-|tetratricopeptide-repeat-protein	gnl|CDD|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.66949e-17
NC_010296.1|WP_012265648.1|2290009_2290993_+|DNA-polymerase-III-subunit-delta	gnl|CDD|180982	PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.	0
NC_010296.1|WP_002738222.1|2300788_2301103_-|DUF1825-family-protein	gnl|CDD|370158	pfam08855, DUF1825, Domain of unknown function (DUF1825). This uncharacterized family of proteins are principally found in cyanobacteria.	1.44416e-45
NC_010296.1|WP_012265651.1|2295984_2297013_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl|CDD|235066	PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA.	0
NC_010296.1|WP_012265636.1|2278566_2279910_+|cytochrome-c-biogenesis-protein	gnl|CDD|214387	CHL00177, ccs1, c-type cytochrome biogenensis protein; Validated.	7.91978e-173
NC_010296.1|WP_002799052.1|2277787_2278516_+|sulfite-exporter-TauE/SafE-family-protein	gnl|CDD|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	2.19073e-47
NC_010296.1|WP_012265642.1|2283416_2284340_+|UPF0104-family-protein	gnl|CDD|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	3.88572e-32
NC_010296.1|WP_080507082.1|2291116_2292526_-|IS4-family-transposase	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	3.76329e-20
NC_010296.1|WP_012265641.1|2282874_2283378_-|hypothetical-protein	gnl|CDD|237247	PRK12886, ubiA, prenyltransferase; Reviewed.	0.0014928
NC_010296.1|WP_012265645.1|2285230_2288557_+|AAA-like-domain-containing-protein	gnl|CDD|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.88156e-95
NC_010296.1|WP_012265650.1|2294635_2295793_-|magnesium/cobalt-transporter-CorA	gnl|CDD|213362	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.41677e-169

Protein sequences

>NC_010296.1|WP_012265645.1|2285230_2288557_+|AAA-like-domain-containing-protein
MNYQYRVGGSLAYNHPTYIERNADRELLTALKNGQFCYVFNCRQMGKSSLRVRVTHILQQLGMDCASVDITSLGSNDNLSQWYNGVITRLFLGFNLTGKINLKSWLREREDLPPVQRLGQFIEEILLVYCRGEKIYIFIDEIDKILSLQFSLDDFFSLIRYCYNQRAENAQYERITFALFGVATPADLIREKTQTSFNIGQAIELTGFNLAEIAPLAAGLSSQSNYQPDCLEKIIFWTGGQPFLTQKICQLLLESNLDIETLIKERIINNWESHDEPVHLRTIADRLLRNQDKAGRLLGIYQQILEKGAILCDDSPEQGELRLSGLVVKKDNQLVVYNPIYREIFNLNWVEKQLEQLRPYSEALAAWQQSNYTDESRLLRGKALNNALDWSQGKSLSNLDYQFLTASQNLDKREAEISLETQKQANKILAIAHQKATKRIQIGSVILIASLLGSLLAFIQVKQAWKQVESAQLGIQLQRNGDSYWQQFQFEQLESLIASMQAVNSLKNIVTDDQTLSKYPATSPIITLQQILDRIQEKNQLQGHRGTIYSVSISPDRQKIATASQDGTVKIWNQKGENIQTLTGHQGAVYSVSFSPDGQKIATASEDKTAKIWNLQGQNLVTYPDHQESVYSVSFSPDGQKIVTTSRDKTARLWNLSGQTLQVFKGHKRSIDAASFSPDGQKIATASRDGTIKIWDLSGKIILSLGQENIETFYSVNFSPDGQKIAGAAADKTAKIWDLQGNLIATFRGHQDFVNSVNFSPDGQFIITASSDGSAKIWGLQGEEITTLRGHQESVFTAVFSQDGKEVVTGSSDETAKIWQLNNLNQARVDNTSVSINSQGNIIAIANKDGQITLLDSQGKNIREFATKMRSIYSIAFHPDSNQMAITGRNGKVQIWSQKGTMLQEFTASQVPIYSLAFNGEGTAIITGTSEGKVQYWHLSNYRPQLINSWTADDNIIYDLVFSPDHQKIATATRGKIKIWDLQGNLFEEIKTDSFPVYGVSFSPDGEKIAAISRDGTARRWDRDGNLRSEFKIEEDIVYGITFSPDSREIVIIARDGQKHRWPLETEYNYLQKLLDRGCLWLEDYLGNRPEKREALSLCTRKIKPFTF
>NC_010296.1|WP_012265644.1|2284759_2285116_-|hypothetical-protein
MKKTFFTSIAVSATLVSGIVLGTLDAGSASACAFAKGKSIFGSNTTLPVDANKLILGVAAATGAITVAGVLSYRRFHSAQPPEDATANLPAVFPIPIPPAALNVAVVTEEAAETSKIS
>NC_010296.1|WP_012265643.1|2284405_2284642_-|hypothetical-protein
MLKGATLPREVKMGNSSTFSDTPLHKDHHTWEHLKQAIAASSGFRRWQQEQLESGKNRDDADARICSYLRETLETLAY
>NC_010296.1|WP_012265642.1|2283416_2284340_+|UPF0104-family-protein
MYKKIQRFAPIILSLSLFILAVWAISQEFKHYTFAQLLASLDHITTSRQLEAIFWMALGYLSMTGYDRLGFYYIKHPLALGTIIRTAFISYALGNTIGLTLFSGTAIRYRFYTPAGVGVVDIAKVITFTHLSFWLGMLGIGGLSFLLDPQRIPQLLKLPFLTTKPLGIIFLLLVTGYFFLTLTYKKPIRIGQENIYLPSWTLFLALILLTFIDWILAARVLYLLLPGSYNTSFLGFFGLYVFAMTAGVLSNVPGGIGVFEFIMLRLRPEYVSNAELLGSLIAYRAIYYFLPLIVAFVWLLGYEARRK
>NC_010296.1|WP_012265641.1|2282874_2283378_-|hypothetical-protein
MKKSKLDLAKRLNRSRKRKYDKFLTSSLYLTIILGLFYLLYLNLPWSFHLFMHWVTKGGDLDKIPAKFYAELNQLCLRADSRGEVRTRNYTEHTEIAESLGTFRCTLVNGGQEWLIEDYKSFSSADEAILGTQLAVLIAEILGTDYSYNIRAYIPNTKYQIAPKTKS
>NC_010296.1|WP_012265640.1|2281988_2282837_+|hypothetical-protein
MNRPGNRFTESPKTPPTPEVEIQEVPLESPHTEADLAVESATPAEVKRQQPIPPPSHLRQYRAIGLVYGHYQRSEEQLTKGNILTADGTLIDSVILGRVISLVKNHLDLEKPHLWVVYPRTRQENDALHVQIVGVWEPETLKKEDDQEIEPLLASTPGYFSIRGEVIFTERENQAVVVKIRQMPKTEADKPKFFKLKLRGTLPGKPISRFWDFQVQLKGDALTILEGLDLGFASKKKPMGKGGFKKPFDKNRHLSGEGEKRPFTPGQSPIPRPSRPKPVSEN
>NC_010296.1|WP_012265638.1|2280883_2281714_-|tetratricopeptide-repeat-protein
MKASLSHRRWLSIGLVLMLFALLSFSMMPLLTSILQSERHSGQSHLSAVKQEELASQALGYQMVLEREPDNQTALRGLLDTRLQQGDLKQAIEPLEKLAQLNPQQSDYLLLLAEAKQQIEDYAGATASYRALLASHPQELRALTGLTNLFLSQNRPIEAISLVKDTLDRALKAAADPNNPASLIDIVSVQLLLGKIYFEQQNYPEALNAYKQAQQMDVNDFRPILAAAIVLKEQGKNQEAQPLFQDALSRAPFAYRQEIQTLADENNKIEATAPNQ
>NC_010296.1|WP_012265637.1|2280025_2280883_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRRGLNQVTQGQKIIGGEVLLQRTLAYPNCEATFLQGIAQTTITNWQRRGKYLLANLDNGSSIGVHLRMTGQLLWVKDTTPLPIHTRLRFFFANQQELRFVDTRTFGKIWWIAADKTPESVITGLKKLGLEPFDRNFTADYLYSHCQKSRRPIKTFLLDQNVVAGIGNIYADEVLFKSGIHPQTAANLLKIEQIDLLTKNIISVLETAIAEGGTSFSDFLHVTGVNGNYGAMAWVYGRNGENCRLCGATIARIKLSGRSAHFCPQCQVSRGEGRKS
>NC_010296.1|WP_012265636.1|2278566_2279910_+|cytochrome-c-biogenesis-protein
MTISETSSNLKNTPPQWGRKFIQTIADLRLAIILLLLIAIFSISGTVIEQGQSLSFYQANYPEKPALFGFLTWKVLLLLGLNHVYSTWWYLSLLILFGSSLTACTFRRQLPALKAARNWQFYQQSRQFQKLALSAELETGSLESLTPLLEKKGYKVFLENNSLYARKGLIGKIGPIIVHAAMLIILAGAIWGALTGFFAQEMVASGDSFQVKNIIEAGPLSKNSLPKDWGIKVNRFWIDYSPKGDIEQFYSDLSVIDNQGQEIDRKTIQVNQPLHHKGVTFYQTSWGIAGVKVQVNNSPILQLPMASLDTKGNGQIWGTWIPTKTDLSEGVSLLTRDLQGTVIVYDAQGDLTSAVREGMTIPINGVNLKIVELVGSTGLQIKADPGVPIVYLGFALLMMGVVMSYFSHSQIWALQSGDRFYIGGKTNRAQVSFEREIIDTIERLKLK
>NC_010296.1|WP_002799052.1|2277787_2278516_+|sulfite-exporter-TauE/SafE-family-protein
MLDQLQTQLYHLEQYADRLVTSQLTHLSFVSIAVIFLAGLLTSLTPCMLSMLPITVAYIGGYENQGRLAAFWQSTWFSLGLATTLAGLGLIAATLGKVYGQVGIGLPIIVSAIAILMGLNLLELLPLRFPSLGATDWITGDFPPILRSYLLGLTFGLIASPCSTPVLATLLAWVANTGDLSLGGGLLLSYTGGYVLPLIIVGSFTASLKSFLSLRQWSGWINPVSGVLLIGFGVFSLLSRLL
>NC_010296.1|WP_012265648.1|2290009_2290993_+|DNA-polymerase-III-subunit-delta
MPTIFYWGEDEFAINQAVKNLQVKLLDPNWIQFNYDKINGDRNEAIIEALNQAMTPVFGMGNRLVWLADTVICQQCSEDIFKELQRTLPNLPENSYLLLTSAKKPDSRLKSSKFIQNQAEVKEFELIPPWKVEEIAQRVREIAKEVGVKLTPDAIELLAEAVGNNSRLLWMELEKLRLFKNNSAGTIDKKDILSLVNASNQSSLQLASAILKRETGKALELVNELLNRNENPLAITATLGGQFRTWAIVKLKIEEGEKDEKNIAAAAEIANPKRLYFIRKEIQSFSSKQLLATLPILLELEYRLKRGAEPLATLQTKIIELCCLLVT
>NC_010296.1|WP_080507082.1|2291116_2292526_-|IS4-family-transposase
MEKWAAQELQYADLGDTRRKKRLISIVENLASQPSTSVPQASGNLAAASATYDFWNSPYFHPSDIIAAQAKSTVERIKEHPIVLAVQDTTSLDFTTQKAKKGMGYLDYKKSFGLKVHTTLGVSAQGIPLGLINQYVWAREEKNLGIAKQRKKRETEEKESQRWLDSLSETQQQIPEDIQVVTIGDCEADIFDLFAQSRSPNSHLLIRGTHNRKVNYLEDKQRSGHPEPKYLHQSIREVKACGSLDVQVKRNPNHEARLAKLTVRFASFEIQVPKHHSKANPRQPVKLQVILAEEEKPRPGVNPISWLLLTSLDISSFESAITCVRWYSYRWLIERYHFVLKSGCGLEKLQLETGRRIEMALATYSIVAWRLLWLTYQARLHGEESCESFLEEHEWQSLCATIHKKSPPPEKPPSFREAVRMIASLGGFLGRKGDGEPGVKTIWLGLRRLHDISQTWKLSHQISPPIEPP
>NC_010296.1|WP_012265649.1|2292767_2294420_+|CHAT-domain-containing-protein
MTDDAIPSLNLAISSLATSNNFARWVTKAPLPGGYVHHDCEWTESLTTEWMAWQEMFCLQKMPTLPMLEQLEANSRPKLTLSGEGGSYGGQLMQKLGISLWQWLFQASIGQSFAQSQGIALGKNQPLRIRLECRNPHLILLPWEIMQQAGKQAISLHPNILFSRTTSDVEPLPPIKPSNSLNILLVIGEKQIKTAASSLNLTAINTGGETNPDQALESEAANLIRAISPSGSPPENLGVKIKVDTLIRPGAKELTEALDTGKYQAFFYAGHGIAAPNGGSLFLRTGEQLNGTELAQALVRNQVILTVFNACWGAYPAKSGQEMIPRSSLAEVLIHHGVPAVLAMRDAIADREALSFIEVFTRTLFGFKDKEAQMSKLFPAPRVPIDQAVRIARQQLLTLYKYNQPAWTLPILYMHPEFDGQLLQTLDETQSPTVMPNVSGTMPAAFLYYLDRPERKWSIRGGGMNIGRDMENDLQITEKWVSKNHCRIICRKKPDDSDYQYFLEDFSRFGTFIYQDGQWKQVHNQEVPLESGLQIRFGSYQGQILAFVVE
>NC_010296.1|WP_158303511.1|2294426_2294591_+|hypothetical-protein
MAEKVCRRGRVWGVGCGVLGFWGVGVLGCGVWGVGCGVWGVGRINKNNLLSPDS
>NC_010296.1|WP_012265650.1|2294635_2295793_-|magnesium/cobalt-transporter-CorA
MTQLQPDIFVNNRPDTDGDEEEDYFDYFYDEPGSEPGTLIIEPDAKPSRIILIDYDEDNAIRKVDITPNACAPYIGTNTVSWMDIQGLGSETVLKQVGEIFNLHPLLLEDVVNVPQRPKLEDYNNQLLVISQMVRLKEDESGFDTEQVSFVLGKRYLLSFQEEELQDCFEIVRDRIRTSQGRVRKSGADYLTYLLLDTIIDGYFPVVEHYEDRIEALEDMIISNPDRDTMQEIYDVRRELLALRRLIWPMRNVLHLLMRDHHGIVSDEVQIYFRDSYDHVIQILEIIEAYRELAASLMDVYMSTMGNKLNEIMKFLTVISTIFIPLTFIVGVYGMNFENMPELKGEWSYFMVWLVMLAVAGGLIFYFWRKGWFKPIYSLKEEAKS
>NC_010296.1|WP_012265651.1|2295984_2297013_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MESASFIPRLVIPVGDPAGIGPEVVLKAIADSPISCSCQITLIGTRTLLEKAYHDPHLLDRFSLIDLPYNQEKIVCGRGDAHSGEISFLYLQEAIKRTLKGEFDGIVTGPIAKSCWQLAGYDFPGQTEVLATMAGINRYGMLFVAKSPHTGYNLRTLLATTHIPLREVPDALNPDLMTRKLDLLIESLKLDFGIDRPKIAISGLNPHSGEAGKLGREEKDWLQPWLESMGQKYPQTQLIGLVPPDTLWVEPGRAWFSGQGQPADAYLALYHDQGLIPVKLMAFDCAVNTTIGLPFVRTSPDHGTAFDIAGLGIARPQSMQAAIQLAIELCQQRDSRRTKLEI
>NC_010296.1|WP_002799077.1|2297037_2298402_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MGIASVNPATGEILKTFTPLTSEELAAKLALAEATFQQYRRTAISERGQWLRQAADILERDQVALAKTMTLEMGKPIKSAIAEVLKCALVCRFYADNAAGYLEDVLIATDASRSFVRYQPLGVILAVMPWNFPLWQVFRFAAPALMAGNVGLLKHASNVPQSALAVERILLEAGFPEGAFQTLLIGADRVSDLINDERVKAATLTGSEPAGMSLAAAAGKQIKKVVLELGGSDPFIVLDTADIEAAAATAVTARLLNNGQTCIAAKRFIVMETVADQFEQLLVAKFQALRVGDPLDETVDIGPLATVSIVSEIAHQVEKTVAMGGKVLVGGQRLEGKGNFYLPTILTDIPVGSPGEKEEFFGPVALLFRVKNIDEAIALANDSPFGLGSSAWTNNPAEIERLITEIEAGCVFINGMVKSDPRLPFGGIKRSGFGRELSVEGIREFVNVKTVWIK
>NC_010296.1|WP_002799079.1|2299545_2300658_-|hypothetical-protein
MNSRPDSQENIEPPQYSEKTNRIQAISQLIKAITPLIWAIVVLVVILPLLGKIWLGTAGNEPLKTRVATETNLEIPITIPEKSNSQIDREISQALQTARANSQSFALGEIEGWVEELMTRVDQGFLPWYFNYFNQKQFEGKAFLSGLYSSIAHWVNTDNPLPEQVVAENLTKTIQTEFTKRVIRPQEAQLRLERITRDAVNLYVNNLSNELANIQASYQIPQGKWDRYLSDIAVTIKDTEGNISNTSIKLLVGGTTALGVKSLVPVMKVGSTVYLSLAGKTGAKIATKTGGAVASSFGAELIDPIVGIGLIVWDLWDYQHRVNIEKPILRDAIFNYLQEVKYDLVNNHQGSVLSSIYQIEATVNKSLVRT
>NC_010296.1|WP_002738222.1|2300788_2301103_-|DUF1825-family-protein
MGFFDSEVVQQEARQLFEDYQSLTQLGSEYGKFDREGKIIFIDRMEELMERYKIFMKRFELSEDFSAQMTVEQLKTQLGQFGMTPQMMFDQMQQTLERMKAEIR
>NC_010296.1|WP_002799081.1|2301355_2302105_-|di-trans,poly-cis-decaprenylcistransferase
MTLKPSLSPELPTDLDKNRLPQHVAVIMDGNGRWAKNRGLPRIMGHQRGVDALKDLLRCCRDWGIPALTAYAFSTENWGRPLEEVEFLMTLFERVLRRELEEMMQQNVKIRFIGNLSALPESLRREIAKSQAETSKNSGIQFTVATNYGGREEIVQACQAIARQVQQGLVSPEAIDESLFEQYLYTAGIPNPDLLIRSSGEMRISNFLLWQMAYAEIYVTDTLWPDFDRVQFHRALKDYQGRHRRFGKL

Crispr_ID: NC_010296_15

• CRISPR_ID: NC_010296_15
• CRISPR_location: 2382045-2382122
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_15

Consensus_repeat	Method
GATCGCCGTTTTCAAGAAACAGAA	CRISPRCasFinder

spacers of NC_010296_15

>15.1|2382069|30|NC_010296|CRISPRCasFinder
CGTTTAATGCGAGAACAACGTCAAGAAAGC

CRISPR arrays and Neighbor proteins around NC_010296_15

CRISPR arrays

The CRISPR arrays of NC_010296_15

>merge|NC_010296|15|2382045-2382122|CRISPRCasFinder
GATCGCCGTTTTCAAGAAACAGAACGTTTAATGCGAGAACAACGTCAAGAAAGCGATCGCCGTTTTCAAGAAACAGAA

>NC_010296|15|13|2382045-2382122|CRISPRCasFinder
GATCGCCGTTTTCAAGAAACAGAA	CGTTTAATGCGAGAACAACGTCAAGAAAGC
GATCGCCGTTTTCAAGAAACAGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012265732.1|2389411_2390704_-|PDZ-domain-containing-protein	unknown	unknown	gnl|CDD|272970
NC_010296.1|WP_012265723.1|2382605_2383340_-|lipase	unknown	unknown	gnl|CDD|366799
NC_010296.1|WP_012265714.1|2366132_2367128_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265728.1|2385606_2385999_-|DUF4278-domain-containing-protein	unknown	unknown	gnl|CDD|372912
NC_010296.1|WP_002759945.1|2374869_2375526_-|DUF1906-domain-containing-protein	unknown	unknown	gnl|CDD|378098
NC_010296.1|WP_012265712.1|2364370_2365555_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|226984
NC_010296.1|WP_012265715.1|2368387_2369653_-|amidohydrolase-family-protein	unknown	unknown	gnl|CDD|238624
NC_010296.1|WP_012265729.1|2386153_2386555_-|FHA-domain-containing-protein	unknown	unknown	gnl|CDD|366133
NC_010296.1|WP_012265718.1|2371776_2372817_-|lipase	unknown	unknown	gnl|CDD|366799
NC_010296.1|WP_012265725.1|2383843_2384629_-|hypothetical-protein	unknown	unknown	gnl|CDD|225720
NC_010296.1|WP_125730241.1|2383412_2383646_-|lipase	unknown	unknown	unknown
NC_010296.1|WP_002795432.1|2367365_2368388_-|GTP-binding-protein	unknown	unknown	gnl|CDD|223597
NC_010296.1|WP_012265731.1|2387045_2388095_+|AI-2E-family-transporter	unknown	unknown	gnl|CDD|279875
NC_010296.1|WP_012265713.1|2365554_2366073_+|DUF4276-family-protein	unknown	unknown	gnl|CDD|379470
NC_010296.1|WP_012265726.1|2384754_2385084_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002799168.1|2389236_2389422_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265716.1|2369783_2370242_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265717.1|2370366_2371638_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_162467761.1|2389028_2389181_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265711.1|2362994_2364131_-|geranylgeranyl-reductase-family-protein	unknown	unknown	gnl|CDD|273936

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012265732.1|2389411_2390704_-|PDZ-domain-containing-protein	gnl|CDD|272970	TIGR00225, Tail-specific_protease, C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair].	3.10591e-144
NC_010296.1|WP_012265723.1|2382605_2383340_-|lipase	gnl|CDD|366799	pfam01764, Lipase_3, Lipase (class 3).	2.15341e-10
NC_010296.1|WP_012265728.1|2385606_2385999_-|DUF4278-domain-containing-protein	gnl|CDD|372912	pfam14105, DUF4278, Domain of unknown function (DUF4278). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 58 and 136 amino acids in length. There is a single completely conserved residue R that may be functionally important.	4.15809e-21
NC_010296.1|WP_002759945.1|2374869_2375526_-|DUF1906-domain-containing-protein	gnl|CDD|378098	pfam08924, DUF1906, Domain of unknown function (DUF1906). This domain is found in a set of uncharacterized hypothetical bacterial proteins.	1.86965e-29
NC_010296.1|WP_012265712.1|2364370_2365555_+|AAA-family-ATPase	gnl|CDD|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	2.80843e-138
NC_010296.1|WP_012265715.1|2368387_2369653_-|amidohydrolase-family-protein	gnl|CDD|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	3.30071e-101
NC_010296.1|WP_012265729.1|2386153_2386555_-|FHA-domain-containing-protein	gnl|CDD|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	5.74222e-16
NC_010296.1|WP_012265718.1|2371776_2372817_-|lipase	gnl|CDD|366799	pfam01764, Lipase_3, Lipase (class 3).	2.47297e-10
NC_010296.1|WP_012265725.1|2383843_2384629_-|hypothetical-protein	gnl|CDD|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	3.07041e-22
NC_010296.1|WP_002795432.1|2367365_2368388_-|GTP-binding-protein	gnl|CDD|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.46906e-72
NC_010296.1|WP_012265731.1|2387045_2388095_+|AI-2E-family-transporter	gnl|CDD|279875	pfam01594, AI-2E_transport, AI-2E family transporter. This family includes four different proteins from E. coli alone. One of them, YdgG or TqsA, has been shown to mediate transport of the quorum-sensing signal autoinducer 2 (AI-2). It is not clear if TqsA enhances secretion of AI-2 or inhibits AI-2 uptake. By altering the intracellular concentration of AI-2, TqsA affects gene expression in biofilms and biofilm formation. TsqA belongs to the AI-2 exporter (AI-2E) superfamily.	1.64864e-38
NC_010296.1|WP_012265713.1|2365554_2366073_+|DUF4276-family-protein	gnl|CDD|379470	pfam14103, DUF4276, Domain of unknown function (DUF4276). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 224 amino acids in length. There is a single completely conserved residue E that may be functionally important.	1.57008e-08
NC_010296.1|WP_012265711.1|2362994_2364131_-|geranylgeranyl-reductase-family-protein	gnl|CDD|273936	TIGR02032, Uncharacterized_protein_MJ1520, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	7.26071e-67

Protein sequences

>NC_010296.1|WP_002759945.1|2374869_2375526_-|DUF1906-domain-containing-protein
MTQLPGIIQSAPNQSLGFDADSVITKATAQKFASQGYKFCLRYLSLGAGEAPGDLTYEEALSILQGGLALMPVQHVSSPGWVPSAQLGTTYGDNAANNAISVGFPRKVNVWLDLEGISSEVSAEAVIQYCTSWYNAVAGAGYLPGLYVGANSILNSQQLYDLPFQHYWQSESTVPPVAVRSYQMVQSYVGEPVNGIGIDQDITYIDKEGGVPQWLILT
>NC_010296.1|WP_012265718.1|2371776_2372817_-|lipase
MPTYDQQQTLFCLSMFANISNSEKVISDLANPTVQGKIGQWTILWGPVIYYHDPKNQNWDNIMYVAKGENAETNNPQYVVAIAATNPQSVFDWLQEDAATHNMVSWSTQFAERGKISEGTNTGITILQNLKDSSNRSLLEFLTQEIPSQSDQPIEIITTGHSLGGALSPVMALWLYENQATWNPTGKQITVNTQFSAGATPGDKTFSDYYGNTEPGLNQSSRLWNSLDIVPHAWNIEQLQQIPTLYQSCNIPKSSRIALLVNSQIQKVKNCNYLALNPSTFAMKGECGVFPQPQTTPLKQFLQEAYFQHIQAYFNLLEIDWPLTENVADSLTLTEQDLDDIATKLS
>NC_010296.1|WP_012265717.1|2370366_2371638_-|hypothetical-protein
MSFPYTQCISAITIPAGEYKNYTFVVAAYQSGISVGQFSPNPTPPSYTLGGVSNLDNNGASTTAIEFLLDYSNTDYSPPYYFVYGSEDENIWLNSINPATGGSHFTSSNVTTQIASEKQPDAPIAGLFYYFPESLLYVAASNGNLYWYSVTWSNGVPSLSYVGSNTSYSQTDGASVSLTFFPAGKLTNYDCLLLGGCAATGVIFNAKNPSSTPTLYGYHGGCNATDVCQGPKGIYWATPAGGLHYQPYSGFNASLSPIWTVPSGQVILSLAYSPNAGNADPGNYPEGAIFIATAPSNPSNSSMGSIYVCDASTNTVGNAAQQDATISGSPWGIIADANLTYMCATGSCGVFLSTLAAYNPESTIPENGMLVPNKGTSGVGHTWISDLVSAAALVFGVVTEDPVAVGWAVAGIDAGAIDAQTGY
>NC_010296.1|WP_012265716.1|2369783_2370242_-|hypothetical-protein
MVLYRCKESYTITVKDEDGSFLWNFNNFPCDFVGDRRGEADMGAIPFEFKPYNIPLVVANARLFSVFGFDDPSWLGSPLDIRLCFAADNGMQSITLIPNKAADFEVIEDSERCNILRHVYDSRSYFEILLGSTQENADTDTIWLHTMNVYQD
>NC_010296.1|WP_012265715.1|2368387_2369653_-|amidohydrolase-family-protein
MTGTNSTSPNYVIVTDQYWDGLADNPLGATEIRVENGNITAIATTVDHSNAEIIELKGHTVTPGFIDCHVHITFCEGDPTIPENPYMVTVPLMTLYSLNPLKILLMNGFTTVREVGCPDPEFITVDLKKAIAKGWIIGPDLLVAPHLISAQGGHGDFTSLVAFQFRPEKFEVADGTAEIIRIVREEIRSGADWIKFCATGGFSSPTDDPSQTTYSQEEMNILVSTAKDFGISACPHAYGGEGVQRAVNAGVRSIEHGNLASSETLQLMEQKGVYLVPTQYTVLEKARNANNPEYWQNRSPWQHAKYQKYASQLIACADNLAKSNVKIAFGTDAGTFPHIDNWKEFPAMVQNGITPLRALKAATTVAAELLMQPNIGALAVGKFADIIAMPGNPFEDINVTGKVDFVMKRGVIYKQPSGGQV
>NC_010296.1|WP_002795432.1|2367365_2368388_-|GTP-binding-protein
MVLSSNLWKTPVTLLTGFLGAGKTTLLNSILKGKSDRRFGILVNDFGSLNIDQMLIKNRDDDLITLEGGCVCCSLQNNLVNSLPKILSLRPDQILIEASGIANPYTLLQTLKRPVLSRIIRLESIITLVDATYLPQICEPSGKINYQDLLIDQISAADIVVLNKIDLIDEKAQINASQIIQKIAPWVRLLKGSYGDVSLDLLLGFRDSFPVRSVSSQLKSNHSDNFHTWSYESVRPFQLLTLGKILGKLPVTVWRAKGILSTVEHPNRGVILQQVGPRITLEIGEEWGNNPPFTQLVLISTEAMNTKILQQQLDSCLRVEDFEVNSKTQTKDNFILSNEM
>NC_010296.1|WP_012265714.1|2366132_2367128_-|hypothetical-protein
MITSTPVKKNDDVNALNADIREVLLEVLPIISPELQLELTKLVQQIHHLNYLIYKKSNSWKIGWFIFNNDPTKLILLLEEIKYILLMAKTNKVGVDAIREFRINLEKEINNSRYFLWGHILNGFSSIYSTRSVPFKIFLGLSITTFLSMIALKFSAQEIYIFDDNLHQKHSQEEALISKPLPQANSPAPIPSSSYSEHLTSSSDTVNPDRHIIYALVYAATAGVLGSVASILLRIIDFTDQKYDDPLIPFFIGLFRPLIGLILGIFIFSLISSDTLIKIDFMITQDKNSSSLITNKARQDLFIFSCAFLVGFSERFASDLLKKTESGLIEK
>NC_010296.1|WP_012265713.1|2365554_2366073_+|DUF4276-family-protein
MNYDIVFLLEESSIKNVLEELLPKLIPPEISYKCISHQGKQDLAKSIPRKLKAFKNSSPNTKFIIVHDQDSHDCQKLKKDLGEICQNASDAQVLIRIICHELESWFLGDLAAVAKAYNLNSLGQKQNKSKYREPDQLNSAKQELTKLVKEYYAGTHSKQIAPHLFLTENKSL
>NC_010296.1|WP_012265712.1|2364370_2365555_+|AAA-family-ATPase
MKIVSIKIKNYRMFKNIHIRDIPPFCVIIGANGTGKSTLFDIFGFLRDALKNNIRQALQIRGGYREIITRGQEQEDIEIELQFPMKILDTERLVTYQIIIGQNNNRPVIKREILRYKRGEHGKPFHFLDFQLGQGYAITNEEDFSKPDKELDREEQQLESNDILAIKGLGQFQRFKAATAFRSLIENWHVSDFHISEARGSKEISYAEHLSPTGDNIATVAQYIYQQYPKIFQQILEKMKQRVPGISSVEAKETEDGRLILRFQDQAFKDPFIDRYVSDGTMKMFAYLILLFDPNPHPLLCVEEPENQLYPTLLKELAEEFAHYSDQGGQVFVSSHSPDFINAVPLASIFWLIKSQGITQIHRATDSEILKNLVAAGDLPGYLWNQGWFKGVEP
>NC_010296.1|WP_012265711.1|2362994_2364131_-|geranylgeranyl-reductase-family-protein
MFDCIIIGAGPAGATAGYHLAKKGRTILILDKAKLPRYKPCGGGVSPAIKQWFDFDFTPVIENTVTQVEFTWKQGDAATTKLNMLEPMWMVQRDRFDDFLGQQAIAVGATIQDNSEVTQIKFVQDHWQVTTSQGTFSGKYLIAADGVKGNTSRWLGLPAKNQAIGATLEITNAEATIPPQKAFFDFGSLKNGYIWAFPKSNGYTISGGCFKGSIKSEELKKQLLNYARQKGWNLEDYRYSEYALALWNGNKPLHAQNALITGEAAGILDPLIGEGIRPAILTGVKAAEAIDRALAGDNQALAGYSRIIREEWGEDMALAAKLAGLFYQFTQIAYNIAVKRPIAGQLMGRILVGDLKYRDVTEQAMQQLKKLLLPGFGW
>NC_010296.1|WP_012265723.1|2382605_2383340_-|lipase
MVSWSTQFPERGKISEGTNTGITILQNLKDTSNRSLLEFLTQEIPSQSDQPIEIITTGHSLGGALSPVMALWLYENQATWNPTGKQITVNTQFSAGATPGDKTFSDYYGNTEPGLNQSSRLWNSLDIVPHAWNIEQLQQIPTLYQSCNIPKSSRIALLVNSQIQKVKNCNYLALNPSTFAMKGECGVFPQPQTTPLKQFLQEAYFQHIQAYFNLLEIDWPLTENVANALTLTDQDLDDIATKLS
>NC_010296.1|WP_125730241.1|2383412_2383646_-|lipase
MPTYDQQQTLFCLSMFANISNSEKVITDLANPTVQGKIGQWTILWGPVIYYHDPKNQNWDNIMYVAKGENAETNNPQ
>NC_010296.1|WP_012265725.1|2383843_2384629_-|hypothetical-protein
MKLEDIIQQNLVKPIDSLAGDSELCREVQTRLQVLGLLPANGVDGIYGPQTKQAFEQFKQKIKEGELDTLGASSAKFLLELKELPGGNNLISKAQAESIYSNVISDGQLADLNSCLNRFEINTHPRMCHFLSQTAHESGGLKWMKELGSGEEYNGRKDLGNIYPGDGPKYKGAGVIQLTGRSNYQAFANYIHDPKVMDGVDYVSTTYPFTSGGFWWHNNNMNALCDRGATVEEITRRVNGGLNGLADRQAYYEKAIKVFPV
>NC_010296.1|WP_012265726.1|2384754_2385084_-|hypothetical-protein
MFANISDSNKLMADLADSNVQTKIGQWTIVWSPVIYDHDPKSQVWDNIMCVAKGQNLTTNNPQYVVAIAATNPQSVFDWLQEDVNTHNMVLWSSTNPEQGHISEGTNTG
>NC_010296.1|WP_012265728.1|2385606_2385999_-|DUF4278-domain-containing-protein
MTLAYRGVKYERDSLPLEMKTGDIGGKYRGQHWNHHYPRHMLQLEPKLHRQYRGVAYSTRPHLAGQVTPNTCPLPVVKPPVVVQEETLSSIHLNNIRLRLERRLQIAQENGDETLVNLLKKESQDLALNC
>NC_010296.1|WP_012265729.1|2386153_2386555_-|FHA-domain-containing-protein
MITLTLLHPSQATSLQHWQFDNDQSTILIGRALDNHVVLYSAVVSRRHLEIRHNDDHDDWELENLGANGTFVNGKPIEKTAVVDGMVVRLATSGPQIQIRLIDEDEQPKLILKPLEAPLVGDQIQPEKDTIAS
>NC_010296.1|WP_012265731.1|2387045_2388095_+|AI-2E-family-transporter
MTFGSSLGLVLLVFCLLILWQIRQILLLLLMAILLAQILNLAVTWWQRHHLKRSYALIITLFGFFIGIIGIFVGIIPALVQQFRQLFSLLPQAIERLWGQVHSLEDYLDPSLASVLPDFKTLLAQLQPLINQIAGRGLSIFYGTFGIILSLLLIVALGLMILADPAAYYRCFLRLFPAFYRSRVRSILEQCDRDLKAWLKGIFCHMLIMTLGSCLGLSLIGIPLAFSQSILAGFLTFIPNLGPVLSTILPFSIALLETPWQPWAVLLLYSSIYLLIQYFDRHSPLPILTVRSLRLLPAFTLLAQLFFASIFGFLGLFLAVPLALIGRIWLKEALIEDILDHWRIGDKKS
>NC_010296.1|WP_162467761.1|2389028_2389181_-|hypothetical-protein
MNQPYPTPQTPHPTPQTPHPTPQTRYSRAGSRLPTPCFKTGLTTFAVSGS
>NC_010296.1|WP_002799168.1|2389236_2389422_+|hypothetical-protein
MDNSRQNWYIVQENTGICQIIALENGKTPVNGQYWGPFAERGEAIARRVGLIRAGKCQPIV
>NC_010296.1|WP_012265732.1|2389411_2390704_-|PDZ-domain-containing-protein
MVINKRGLVLGATAVVLSTVAVTGAGFRLSQSQAFFQESPKETVDEVWQIINRTYLDGTFNQSDWNAIRNQYLNRSYKNQEEAYTAIREMLKTLNDPYTRFMDPKEFNNMKIDTSGELTGVGIQLTKDEKTKQLVVVSPIEDTPASKAGVLPKDVIISIDGKSTEGMELEQAVSMIRGKVGTSVKITIQRGEEKKELTLTRAKIEIHPVRARTENTPIGKIGYIRLNQFSAQASGDMSQAIRELEAEQVKGYILDLRSNPGGLLYASIEIARMWIPDGLIVSTVDRKGVTERQRANNQALTNKPLVVLVDGGSASASEILSGALQDHDRAVIVGTKTFGKGLVQSVRSLSDGSGLAVTIAKYLTPDGRDINKDGIHPDVESELSEEDRKNLQQEREQVGTFQDPQFKKGFEILEKEITEGKKTPTNTAKQ

Crispr_ID: NC_010296_16

• CRISPR_ID: NC_010296_16
• CRISPR_location: 2498662-2498764
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_16

Consensus_repeat	Method
GCTTGGGCTGCCGCAATGGTTTCAG	CRISPRCasFinder

spacers of NC_010296_16

>16.1|2498687|53|NC_010296|CRISPRCasFinder
TGCGAGGTCCCACTTCCATCTCTTGTAGTTGAGCTTTTTCTTGAGCCAAATTT

CRISPR arrays and Neighbor proteins around NC_010296_16

CRISPR arrays

The CRISPR arrays of NC_010296_16

>merge|NC_010296|16|2498662-2498764|CRISPRCasFinder
GCTTGGGCTGCCGCAATGGTTTCAGTGCGAGGTCCCACTTCCATCTCTTGTAGTTGAGCTTTTTCTTGAGCCAAATTTGCTTGGGCTGCGGCAATGGTTTCAG

>NC_010296|16|14|2498662-2498764|CRISPRCasFinder
GCTTGGGCTGCCGCAATGGTTTCAG	TGCGAGGTCCCACTTCCATCTCTTGTAGTTGAGCTTTTTCTTGAGCCAAATTT
GCTTGGGCTGCGGCAATGGTTTCAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002798891.1|2485401_2486088_-|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378965
NC_010296.1|WP_012265824.1|2499324_2500299_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265822.1|2494315_2497414_-|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl|CDD|223911
NC_010296.1|WP_012265816.1|2487721_2488255_-|hypothetical-protein	unknown	unknown	gnl|CDD|378456
NC_010296.1|WP_012265827.1|2502645_2503548_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|225117
NC_010296.1|WP_002798894.1|2486711_2486993_-|DUF2470-domain-containing-protein	unknown	unknown	gnl|CDD|378456
NC_010296.1|WP_012264345.1|2491677_2492946_-|IS701-like-element-ISMae34-family-transposase	unknown	unknown	gnl|CDD|379252
NC_010296.1|WP_002761882.1|2482561_2483560_-|adenosine-kinase	unknown	unknown	gnl|CDD|238573
NC_010296.1|WP_041804082.1|2506642_2508442_+|tryptophan-7-halogenase	unknown	unknown	gnl|CDD|273936
NC_010296.1|WP_008206984.1|2504452_2504716_+|acyl-carrier-protein	unknown	unknown	gnl|CDD|376348
NC_010296.1|WP_012265834.1|2513353_2518177_+|acyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|225858
NC_010296.1|WP_012265814.1|2486094_2486448_-|NINE-protein	unknown	unknown	gnl|CDD|377473
NC_010296.1|WP_012265829.1|2504778_2506575_+|tryptophan-7-halogenase	unknown	unknown	gnl|CDD|223717
NC_010296.1|WP_012265825.1|2500797_2501574_-|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NC_010296.1|WP_012265817.1|2488650_2490309_-|IS1634-family-transposase	unknown	unknown	gnl|CDD|379471
NC_010296.1|WP_012265833.1|2508555_2513289_+|type-I-polyketide-synthase	unknown	unknown	gnl|CDD|225858
NC_010296.1|WP_002761905.1|2503648_2504167_-|hypothetical-protein	unknown	unknown	gnl|CDD|275148
NC_010296.1|WP_012265835.1|2518395_2521329_+|non-ribosomal-peptide-synthetase	unknown	unknown	gnl|CDD|341253
NC_010296.1|WP_002796844.1|2483724_2483937_-|DUF2555-domain-containing-protein	unknown	unknown	gnl|CDD|371217
NC_010296.1|WP_002761887.1|2486444_2486657_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002798891.1|2485401_2486088_-|helix-hairpin-helix-domain-containing-protein	gnl|CDD|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	5.33203e-07
NC_010296.1|WP_012265835.1|2518395_2521329_+|non-ribosomal-peptide-synthetase	gnl|CDD|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	0
NC_010296.1|WP_012265822.1|2494315_2497414_-|efflux-RND-transporter-permease-subunit	gnl|CDD|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_010296.1|WP_012265816.1|2487721_2488255_-|hypothetical-protein	gnl|CDD|378456	pfam10615, DUF2470, Protein of unknown function (DUF2470). This family is a putative haem-iron utilisation family, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however this could not be confirmed.	0.000190625
NC_010296.1|WP_012265827.1|2502645_2503548_+|helix-turn-helix-domain-containing-protein	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.57502e-27
NC_010296.1|WP_002798894.1|2486711_2486993_-|DUF2470-domain-containing-protein	gnl|CDD|378456	pfam10615, DUF2470, Protein of unknown function (DUF2470). This family is a putative haem-iron utilisation family, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however this could not be confirmed.	7.76829e-31
NC_010296.1|WP_012264345.1|2491677_2492946_-|IS701-like-element-ISMae34-family-transposase	gnl|CDD|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.0995e-47
NC_010296.1|WP_002761882.1|2482561_2483560_-|adenosine-kinase	gnl|CDD|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	8.00736e-109
NC_010296.1|WP_041804082.1|2506642_2508442_+|tryptophan-7-halogenase	gnl|CDD|273936	TIGR02032, Uncharacterized_protein_MJ1520, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	1.10718e-11
NC_010296.1|WP_008206984.1|2504452_2504716_+|acyl-carrier-protein	gnl|CDD|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	2.94766e-14
NC_010296.1|WP_012265834.1|2513353_2518177_+|acyltransferase-domain-containing-protein	gnl|CDD|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_010296.1|WP_012265814.1|2486094_2486448_-|NINE-protein	gnl|CDD|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	3.93238e-12
NC_010296.1|WP_012265829.1|2504778_2506575_+|tryptophan-7-halogenase	gnl|CDD|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.41782e-13
NC_010296.1|WP_012265817.1|2488650_2490309_-|IS1634-family-transposase	gnl|CDD|379471	pfam14104, DUF4277, Domain of unknown function (DUF4277). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 110 amino acids in length. There is a conserved NGLGF sequence motif.	7.22236e-54
NC_010296.1|WP_012265833.1|2508555_2513289_+|type-I-polyketide-synthase	gnl|CDD|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_010296.1|WP_002761905.1|2503648_2504167_-|hypothetical-protein	gnl|CDD|275148	TIGR04353, hypothetical_protein_MarpuDRAFT_0194, PqqD family protein, HPr-rel-A system. Members of this protein show distant homology to PqqD, and belong to a three-gene cassette that included the HPr kinase related protein family of TIGR04352. The role of the cassette, and of this protein, are unknown.	3.93358e-05
NC_010296.1|WP_002796844.1|2483724_2483937_-|DUF2555-domain-containing-protein	gnl|CDD|371217	pfam10742, DUF2555, Protein of unknown function (DUF2555). This family is conserved in Cyanobacteria. The function is not known.	1.33475e-26

Protein sequences

>NC_010296.1|WP_012265822.1|2494315_2497414_-|efflux-RND-transporter-permease-subunit
MSSIFYKNVRLLVLTILAIAVWGLSSFFSLPRMEDPELTPRFAVINTQFPGATPERVETLVTDKLEQALLEVEEIKNIDSTSQLGFSSITIELNDQITDVDPVWSQIRDKVNDAVSQLPSGTSLPEFEESKPKANALIVALTWQLSSPPNYGILSRWAQELEDDLRLIEGTEKVELFGNPTEEIRVEVSPQQLTHLGLTIQSLSQQILESDAKVAAGQLRSEQSSLLLEIEGELDSLDRLNRLSIKSGSSSQVVRLGDIANISKGIEDPPREVAMIKGKRAIAIAAFVESDRRLDSWMTVAKAKLERFEKNLPQGIGLHIIFNQSRYVQQQLDSVLSNLIMGAVLVFGITFVIMGWKSSLIVGTSLPLSVLMVFGSMKVLGIPLHQISVTGLIIALGLLIDNAIIVVDEVQMALKEEEGISPLKAVATTVHHIFIPLLASTFTSVIAFLPIATASGATGEFTGTIGVTVILALISSFILSVTVIPALAGRLHHWQPTPTNGYWWQSGFTHSRLTYLYKWSLDRTFQRPLLAIALILILPLWGFISFPTLQQQFFPPTDREQFHLTFELPISVSLPETQSQVMQARKLILQHPEIQDVQWFIGKSAPSFYYNVLQNREQSPNYAQGIVQLQKNVKSGALIRTLQQELDQAFPQAQIIVRQLEQGPPFDAPIELRLYGSDLAQLQALGDQVRAELAKTPDIIHTRATLSESLPKLAVNLNEEKLRLAGLDKRAVARQLDTSLEGTVGGSILEGTKELPVRVRTSNSQRSNLAEISSLNLLSSGNSATSSTIVPLSAVGNVEIVPDIVAISRRNGQRMNTIQGFIPAGVLPEQVLSEFEKRLEMSNFQLPYGYSWDFGGEQGERQDALSNLIATLGVLAIVMVASLVLTFNSFRMASIIIIVAILSLGLGLGSLALFNYPFGFTAILGIIGLLGICVNDSIVILDALRHDAQASLGSRRATRNVVMRATRHVVATTLTTIIGFIPLLFDPSGFWPPLAISIVGGLGGATLIALYFVPSVYVLLCRKNLAQSAKPQ
>NC_010296.1|WP_012264345.1|2491677_2492946_-|IS701-like-element-ISMae34-family-transposase
MKETTPAAMPPCFDRWCRRFDNCFKNEAQKNGFRQYLGGLLGESERKNLTQMANNAVGVVYNRLHHFLTESPWSDRQVNECRLQVMNQCRQTQIPRGFSLIVDDSGHRKSGNLTAGVGRQYLGEIGKTDNGIVAVTTHLYDGKKSVPLDIEIYQPASSLAEGKEDKEFKKKPEIAIDLIDRSLTRGYRPKIVLIDAGYGNNTNFLKALEERKLKYLGGLAKNRKVIIEKEGGVEETIQLEQLAKSLSEKDWEKITLNLDKEKTVWVAVFRAKISQLEGERNLAIVMNASSMEKATEVDYFITNVVEADTVTASWIVRTYTERNWVEVFYREAKGWLGLREYQVRDKRSLLRHFILVFCAYTFILWHKLTGGLQRQWANRPLNTFVEALEAFRTAMSFRFFEWLTENRDVFAAYKASLGFVWA
>NC_010296.1|WP_012265817.1|2488650_2490309_-|IS1634-family-transposase
MNQSTEIEVKNLDHLGLVAGIIDEIGIVEIINEQVSIERGEIVTAGQVVKAIILNGLGFVSRALYLFPQFFEDKATEHLLGEGIEPKHLNDDKIGRVMDKLYQLNVSVIFLLISLAAVKKFGVATENSHLDSTSLSVEGEYKKEYPTVEILKSGAVGEEIETRQQPIKITYGYSRDRRPDLKQFMIDLIVSGDGDVPLFLKVGDGNEADKAVFGQIAREFKKQVDFDSLIVGDSALYSKENLKLMKEMRWLSRVPLSIKEAQELVDSISEKELTDSEIPGYSWRETSSNYGGIEQRWLLVESQARQESDLKKLEKKIEQEKNSAQEKIRQLSRREFENRAVALAIAKGLSDSLKSHQLTEIKVNLIPPESQGSKLKSKDDLPSQSYQVQAKLELNLTAIERLKKRAGRFVLATNDLEKQRLSSEDILKKYKGQQAPERGFSFLKDPCFFAHSVFLKSPHRIEVMAMLMGLCLLVYTIGQRQLRLSLKQQETGLKNPLGKLTDRPTLRWIFQCFQGIHLLRIQDNQKISNLTDERRNILRFFPKPCQEYYLLS
>NC_010296.1|WP_012265816.1|2487721_2488255_-|hypothetical-protein
MSETITPAISDRICKHRNKDHGDAVLFYLGLSAVLLSLHLPAAAQNCRPLSLLGGEGSEVTKTVSQPTVPGPFGVTITRNNWNTDWAVPGGRSFQRFIVTVSVPRAASFDIRLFLKYSDQTNEEFFNTNGVRIEPDKPLTITATVRANDQPFLVNLFVNGIQHIGNTYTASVVGCER
>NC_010296.1|WP_002798894.1|2486711_2486993_-|DUF2470-domain-containing-protein
MSETITPALSDRICKHMNKDHGDAVLFYAQVYGNITDAETAQMLSIDPQGMDLAVEKLGESQTIRIPFERTLESAKDAHNILVEMLKVNQTTP
>NC_010296.1|WP_002761887.1|2486444_2486657_-|hypothetical-protein
MNQVNSTGIKIPKSGWRLLPFLVLGVLVFAFNSSLELNYLVKGYITLLELQTGIVVLYFLLAKLGKSQKL
>NC_010296.1|WP_012265814.1|2486094_2486448_-|NINE-protein
MRNRTIAALLAFFLGYLGIHKFYLGENLAGVLYLLFFWTFIPGIIAFFEFIGLIIMSDQAFDAKYNPNYLPSSTERGLPESGQQKTATLLQLKKLYDQGIITAEEYEEKRRKYLDSL
>NC_010296.1|WP_002798891.1|2485401_2486088_-|helix-hairpin-helix-domain-containing-protein
MSNLSPRPPESSEWIWLSLVPVFGGLAIANAGKKTNNQSWLSVGIALTIISLIFLTQESFIVIWFAQIGLGLYIRQQLNSHPIASANRTDSRQSSSPLEKIDINSCSTNDLVYKLGLPIVYANDIVSVRNEGHIFTHLEELHFLAGLPENYLKKLEPLIIFAYDIRQEVDVSWRCLNYYSVAELVNLGLDFSLADKIVAEREKNGVYRSAIEVRNRTGIPLKSYQQLL
>NC_010296.1|WP_002796844.1|2483724_2483937_-|DUF2555-domain-containing-protein
MTVISFTDQDIAKYTAADIASLAERLEKDEYSNPFEALRDWHLLRAIAFQRQELAESYLYLLDLEAYDEA
>NC_010296.1|WP_002761882.1|2482561_2483560_-|adenosine-kinase
MGKQYNVYGIGNALVDMEFQVSPELLQELGIDKGVMTLVDENRQTQLMEKLALDCKRSGGGSAANTLVAIAQLGGRGFYSCKVGNDELGKFYLQDLRACGLHTNEHGGEKEVGITGKCLVFVTPDADRTMNTFLGITGEISERELVPSAIVNADYLYLEGYLVTSPTAKAAAIKGREIAQAAGVKTALSLSDPNMAIFFREGLLEMIGTGLDFVFANESEALTISGSEEIESAIAYFKTIAKGFAITRGANGSLIYDGENLLEIDPHPVQAIDTVGAGDMYAGAFLYGITHGMGYKGAGNLASLAAARVVSTFGARLQTEEIQSLRDLIVLG
>NC_010296.1|WP_012265824.1|2499324_2500299_-|hypothetical-protein
MSMRHFALLLGLTTAGTATLLAPLPTRAASCETGDLFDFSSIQFIATRPIASNNCLRLFGKRTDPTPQGFVGYGAGHTETALNSPGNPAPYYAAGIDFSPENLVNPLGATRSATLLNNITGFSNFATFLTNNSINVDRIGFSFGPKNGDFTKSWNLGNDINGENYFSSPTSSLEERIYAANSKEVESFLLLDNTKILSFGYSDIYSFLEYGATTAPDDDSEAIISDPFSVSKVAGLLGEFDGLANAFLADVGSNKVQLVSEDAAVVPDDVFIDPSIGPLNPVVSIQFPLQLRIVSTPDPSVTLGLMSLGIIAVGCRLKNKIRKE
>NC_010296.1|WP_012265825.1|2500797_2501574_-|PEP-CTERM-sorting-domain-containing-protein
MSMRHFALLLGLGLTMISTVMLPSPSVQAEPVIYIETGGKESLSFDPDGLAVLESIGLSLASVENTDTPAQGYDYAFNILPPSSDPNIRGTDWVFSYDQETGNYEVISGTTEFTGSIFFNVDQNKLSLPSVLEIGNFSASFQTNTNPDIPLPFLVFITDTLNTGLKVLSPIEPGLPNVDLNNNTWSLEPVPFLFTKEFSDFLVKAGATQSVEGLQIAIGRADRSFVPLSTQSVPEPSSILGLLMVVLAAGYSKFLCIK
>NC_010296.1|WP_012265827.1|2502645_2503548_+|helix-turn-helix-domain-containing-protein
MLLTPNCNPLNSLNFSHSTTNFLNSVPQQEIAESISVIQYLINQIPESVLWIDSQGRIKHYNDAACALLGHSREQLSNLTIEEAAQDFLNSDWSRYWKLIQRRGFGRLITHHPYYEDHQSLDITVNFLKYGDQDYISIVARSLNFLESEKDGYACRIHPSVNSKQAPQSLIQRSSNPQPNFFDSLASFYPDSSQLKPVFEFIEANYSQPITLNDVAGSAGYSPAYLTNLVKRRTGKTIIHWIVERRMLEAQSLLLKTHESITKIAATVGFTDPYYFSRRFSQLHKVSPKRWREKYQTQVA
>NC_010296.1|WP_002761905.1|2503648_2504167_-|hypothetical-protein
MIETHVLNPSVTEIYSTTQPIETAHKSPQMLQELLTSAVVQLETELQDKLEKLLSKQEYQLLEVGEKINALTQELEQAISEFLHIAQQANKTCSSLQFLGESVQKKPNNLPNKGSKDTVRVVYSHAAKLPLPVVEKYGLGFILKDKMVDLSQLGITLSLSRQSPYLSAIKQG
>NC_010296.1|WP_008206984.1|2504452_2504716_+|acyl-carrier-protein
MMTTVQSPCTVEDIQNWLVDQFAQQLDVDLDDIDIEEPFDNYELDSRKALVLLGRLEKWLGKELNPVVIFNYPTIAELATRLGELYL
>NC_010296.1|WP_012265829.1|2504778_2506575_+|tryptophan-7-halogenase
MVTTDTKVYDVVIMGAGFAGVCQARHLLLNVPNIKIALIDPRPEERTNKDLKIGESMVEIATLFVCKELGLYEYMIENHPPKFGLNFHWPKKKDKTTTTDDYYHIWNNRQPPLASFQMNRAKFERDLLKMNKAMGATFYQGRVVDVDLTSKDELKTVIAKVENEQITLKAKHVIDAAGRKFIIGQKTDNLLFGADNLFGLDTGSVWVRVNNIDRTIFHDGYDPYGTTCSHYYATNHWFGHGHWLWMIPTEKDSQEISIGIAYHRSAIADKQINTKEKFYAFLKANHEILYRLVNSGENIDFHYLPRPSHTSKTMFSADNWYVIGDAACIFDPFYSLGSSMISYQIECTTEIIRSKLVGEAIGEKKQAAYNDFILTYTRFNNHLIKHHDQQLGDASIMSWRIYHDYIWWFGVQVPMYTGKWFLDLDFLTRYTPGLKEHQMGYCEHLYQQFNEVIAQGKNLGFMDCHRGDQLWGDYHTLKHFDDFVENAKLEPRRCNVFACMKTTNFYTAIWYANFLWKGFGVTAFVKPKNLFYLLKHLQGVIQADIAERVYKHFTKGIPSNRKIAEMRQEFTTYHYQPELNSWEQETAPLASQKITVTV
>NC_010296.1|WP_041804082.1|2506642_2508442_+|tryptophan-7-halogenase
MVATNTNEYDVVIMGAGFAGVCQARHLLLNVPNIKIALIDPRPEERTNKDLKIGESMVEIATLFVCKELGLYEYMIENHPPKYALNFHWAKDADKTDTIDDYYHIWANRQFPLGTFQMNRAKFERDLLKMNKKMGASFYQGRVVDVDITPTDEMHTVKVKMIDGNYHELRAKHLVDAAGRKFIIGHKTDNVIVGADNLFGVDTGSAWVRVKNIDRTIFHDGYDPYGATCSHYYATNHWFGHGHWLWMIPTEKDSQEISIGIAQHRSVIANDQINTQEKFYAFLKANHNLLYRLVTSGENVDFHYLPRVSHTSKTMFSQDNWYVVGDAACIFDPFYSLGTSMIAFAIESITEIIRSQLAGEADTEEKRAAYNDFNLTYTRLNNHLIEHHDKQLGHASIMSWRIYAEYMWWFGIQIPLYVGKWHLDTGFISRYVPKVQADIKGYWHHLYEQFNQLVEQNKNIGFMDAHRTDQLIWGYHTLKHFDDFIENTKFEPRRCNVFAGIKATSFYTAVWYAKFLWKGFGFSAFLNPKNLSYLFGHLNGAVQSAITEMVYKYLTRKLSDNSQIEQTRQEFTNYRYRPQLNPWVKKEVKRSPEKIPIIV
>NC_010296.1|WP_012265833.1|2508555_2513289_+|type-I-polyketide-synthase
MKPIAIIGIGCRFPKANNYHEFWQLLSKGIDGITEIPKERWNIDEYYDENPETQGKMNSRHGGFLSQVDGFDPNFFGISPREALLMDPQQRLLLEVAWETIEDAGITREQLAGSKTGVFVGIATNDYSRIHAGYSHHPQGYDLTGNCTNIAAGRLSYLFNLKGPSLAVDTACSSSLVAVHLACQSLWNDESSMAIAAGVNLILSPIGHIALSKLKALSPDGRCKTFDESANGYVRSEGVGCIILKPLAQAIADKDSIYALIRGTAINHDGRSKGLTVPYGPAQESLIRSALKNAEIEPKELNYVELHGTGTSLGDPIEAMALGAVLEEGRDKDNPCLVGSVKSNIGHLEAAAGIASVIKMALSLKNKQIPPSLHFNKPNPYIPFDKLPLKLQSSLITWPQQETTAKGGISSFGFSGTNAHLILEEANLSHPEPISLTFPHLLPLSAHSQEAVRDLAQNYEDFLKDQALTAEFVQNLCYSASARRTHHAHRQAVVVHSHEELLKGLKELETIDLSTQSKPSKRKTNIAFVFSGQGPQWWAMGRELLATEPVFRSVIKQCDTLIQKYANWSLLAEFNASEAQSRLQETEVSQPALFALQVGLAKLWQSWGINPKSVVGHSLGEVAAAHFAGILTLEEAIHLICQRGQLMQQATGNGKMLAIELPVNEVENLMAAWENKLEIAAINSPYSTVVSGESQSIDQLIAELSQNRPDIFSKELPVNYAFHSQQMTTFADNLVKKLGELQPQKSTIPIFSTVTGDQQEGTLFNAAYWGQNMRQTVRFNPAIEAMIKSRHTIFVEISPHPVLLGYIKSTLREQDTEGFVLPSLRREHSERGTLLNSLGKLYTWGHSINWEKLYPENCQFVKLPLYPWQHESYWVSDAKPQFKSVSSASSLLNLLVEGKTEQLTEQLNQSDQLSPEVKQFLPQLLQLLVGEDTTIAGQMPILQDVSKNCYKVEWQLSPLNLKNKPSQGERWLIFNDNQVVGKALATTLNDAYVLVSSGQTYQKLVSGHYQINPNNVKDFQRLLQDLTEPITKVVYLWGLDSDINSQPSQTRSYASLLYLTQALAQFKTKEPPKLWVITQQAQPVNDAVKPLKIAQTSLWGMGQVIALEYPNLWGGLIDLEEKQPSSQAIIAEITENLGEDRIAFRDHQRYVARLVPNKAIKSSNINFKKTEASYLITGGLGSLGLSLADWLIEKGANHLILTSRRALADHSTDKQVKIKALEDKGATIQVIAADVSDHQQTRQLFHQIQENCPPLQGIIHAAGVLSDRTIDKMDFHCFESVFNPKAAGAWNLHQLSQDLSLDFFVCFSSMSALIGSRGQIHYAAANHFLDGLMHYRRESGLTGLSINWGPWAQGGMATQGYEEGLKRLGINPLQPNLALDTLDALINGNVTQTMVAEIDWSKFKTIVAAKGRVAFLEALFKQDKDNFVQTVENFPQTIQKNPPHRRVTLLTTRLQQEVAQVLGIHGDTLPDTDQGFFEMGMDSLMSVELKHRLEGLFSVSLPSTFAFEYPTIGDVVQYFVQEVFAWQDNSENSQISSETESTDVVVLNQALAELESLSEAETEALMEQELAELEALL
>NC_010296.1|WP_012265834.1|2513353_2518177_+|acyltransferase-domain-containing-protein
MGSHHQKTELTPLQKAVIALKEARNKIEALERQKNEPIAIIGMGCRFPGGANSPEAFWELLSRGKEAIVPVPSQRWDAEAYYDENPDLPNKTYARYGGFLDAVDQFDPQFFGMTPREAIALDPQQRLLLEVSWEALENAGIAPQKLTGTQTGVFVGIGLDDYAKRQIKQQIPIDAYTGSGNAFCFASGRLSYFLGLQGPSLAIDTACSTSLVTVHLACQSLRNRESNLALAGGVSLMLSPEVTLYLSKTRALSPDGRCKTFDKDANGYVRGEGCGMVVLKRFSDAISDGDNILGVIRGSAVNQDGPSSGLTVPNGSAQMAVIRQALENAKVKPEQISYLEAHGTGTALGDPIEVRGINNILCKDRSTDNPLMVGSVKTNIGHLEIAAGMASLLKVILSLKNQEIPPHLHFKELNPDLAAAATALKIPTASLPWQRTEEPRRAGISAFGLSGTNAHIIIEEPPQLSFNPSEVDRPAHLLTLSAKSDDALDDLAQKWVNYLEKNPQLNLADLAFSANTGRGQFNHRLAILAKSTLEAKDSLTAFTQKQPCLNVLSQAVAKSRQNKIAFLFTGQGSQYADMGRQLYETQPTFRHALEECDRLLQPYLEKSLLEVLYSDSSLLDQTAYTQPALFAIEYALYKLWQSWGIKPDGVLGHSVGEYVSACVAGVYSLEEGIKLIAERGRLMQSLPQKGAMAAIFAPIETVKSVISPYGDQVEIATINSSENIVISGDQEAINQIKADLESQSIEVRLLKVSHAFHSGMMQPILAEFKVIAAKISYKTPQLDWISTVTGEEISQAVTEDYWCQQVRQCVQFAPAIETLASQGYNLFIEIGSHPILTRLGQKTLANPDYLWLSSLQRGQDDWQILLQSVAKLAVSGVNIDWNGFDKDYARLRLPLPTYAFQKQPYWLTVEAPGLRPTQGTETVEGQDLHQSQERETLVAPGLRPTQKQNETKAESLESQLIALISQITGLNPQQLSLNVSLEADLGLDSIMMTQLMNGLLSLIPEEQRSQFSETFSLRHLMQVSNLQELLTIIQSHTSSPKPQISNPKPQTKNLKPQPSNLVPILHSQIPLLMSYWSLNSNSLFTKVKIAGEFDLNIAQQAWKLLINRHPMLRAQFQIPEDATCFADYQLEVLENPIPPEILVKDFTTLTPEEQGEKIEEEIYHWLNYNWSLTQWPLHGFSVLKLSDQIHQLFLGNEHLISDGLSNHVMMREFLEIYRAIVAKETPNLPPTLTVEDYRKQVQLMNDWQDIEEDRALAEYNNAVSGMSYRWQPKQQKNAQKSPLFYNQKYLLSAETTSQLIDKTRQWRVPMNALLLGAFIKTMSQIDSKAENIGISIPTSGRIYPEVDATGVVSSFAQNLALSFAKPQSEQDWPTFLSQIQQTVQQHIGTGLDRAQTRQMGTIFRDNITLEKGKIPPHSLSLIQEALKSNLYLPYTGQTHLQPQYDALSITDYQAGGMNATGTIDILQEIFNNRLHLFASYDYHHFDLLLIDQLMTAYVSQIEELANLPVQDQVIISHSSSISLNTEIEEMLRQITSEICHWTIEEDEISDDLEADLGLDSLERIRLVTKLEGIYGKQYRQDLLNCRTLQEMAAILAPSQPSIVNSYS
>NC_010296.1|WP_012265835.1|2518395_2521329_+|non-ribosomal-peptide-synthetase
MAFSPEIPYYKIIKQAQLTPDAIAVLDETCPLTYQQLDHLSNQVAAYLQTQGVNPNTRVGIMTERNPGMIIGILGILKAGGCYVPLDPDYPVERLRYILDHATIEILLTEHQVSEQLISCVTEPLPLQTVLFLDEGERLNKINDLTQITTSIWQKHSKESINLCNRPEDLMVILYTSGSTGRPKGVMLNHRGYMNRLEWMQKTFSLKTGDRVAQRTSFCFDISVWEIFWTLMEGATICPVKREVVLNPWEFAAWIKKTKINVMHFVPSLFGEFISAIENESWTFPDLRWLIFSGEALPMSFIQKWLDCYGLKTGLANLYGPTEASIDVTYHIITERPDERTSSQIPIGKAIDNVYLKVLDDQMQPVKQGEMGELWLGGVQLALGYLKDPEKTAKAFCSNPFSDVSGDYIYRTGDLVKELPDGTLEYHGRIDNMVKIRGFRIELGEIESILTTHPNVREAAVLAIDYGEGQKRLIACLSGDKIKNRVLKAHLEQKLPHYMIPQRFAWFPQLAKNHNGKLDRKALAAELLPAPAAPAAPPTPSLIPLGPAQSWLVNYFEPPYQWLGYTRFLYHQSLNLDIFNQAANLLVQRHEAFRTVCLQNQGKWQQYLINDPQPILAEYWDGSHLTEAERNAKIKAQMSDLAKTIQIDRWPLTATLVVKVSPYCYDITMVAHHIIADMLSATILFKELWSAYHQLLVGSDPTFPNPNPQSYLDFVQVLRDEEKKGTMNEHLNYWKEQFPDAESRFEVPVDHVKGPNIEASAESARFVLSKAQTKQLLSQGKAYYQSNFYPILLAPLYRLLGDWSQRKQVVISHRSHGRDLGEGQSFMESMGNYAVNFPIGINLSTSTTWQKTISTINEQFESLPMNGVTYDWIGESLPEYLYPDSNLTPVRANYLGNRSVPLSDLFEFVYGERDCRLSPLDQKRTTLIEFFFLIIDGQLEIRIEYSRNFHLPTTIQKIGQDYLILLEELEPIGVADS

Crispr_ID: NC_010296_17

• CRISPR_ID: NC_010296_17
• CRISPR_location: 2623111-2623214
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_17

Consensus_repeat	Method
CCCGCACAGTAAAATCGGACAAAATCAATTTCT	CRISPRCasFinder

spacers of NC_010296_17

>17.1|2623144|38|NC_010296|CRISPRCasFinder
GGTGGGGTAGGGTTGATTCATGAATCAACCCTACAGAT

CRISPR arrays and Neighbor proteins around NC_010296_17

CRISPR arrays

The CRISPR arrays of NC_010296_17

>merge|NC_010296|17|2623111-2623214|CRISPRCasFinder
CCCGCACAGTAAAATCGGACAAAATCAATTTCTGGTGGGGTAGGGTTGATTCATGAATCAACCCTACAGATCCCGGACAGTAAAATCGGACAAAATCAATTTCT

>NC_010296|17|15|2623111-2623214|CRISPRCasFinder
CCCGCACAGTAAAATCGGACAAAATCAATTTCT	GGTGGGGTAGGGTTGATTCATGAATCAACCCTACAGAT
CCCGGACAGTAAAATCGGACAAAATCAATTTCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041804089.1|2617787_2618648_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_010296.1|WP_012265278.1|2631173_2632244_-|IS630-like-element-ISMae27-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_012265898.1|2624399_2625638_-|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl|CDD|273211
NC_010296.1|WP_076611860.1|2627095_2628045_-|IS630-like-element-ISMae26-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_012265896.1|2623573_2623795_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804090.1|2619361_2620282_+|FTR1-family-protein	unknown	unknown	gnl|CDD|272930
NC_010296.1|WP_012265903.1|2629908_2630907_-|IS630-like-element-ISMae24-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_158303522.1|2632271_2632700_-|hypothetical-protein	unknown	unknown	gnl|CDD|311102
NC_010296.1|WP_041804094.1|2633083_2633317_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265884.1|2602385_2603327_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264998.1|2609482_2610640_+|IS630-like-element-ISMae23-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_012265887.1|2605803_2608983_+|hypothetical-protein	unknown	unknown	gnl|CDD|380205
NC_010296.1|WP_012265889.1|2615787_2617473_+|dihydroxy-acid-dehydratase	unknown	unknown	gnl|CDD|234861
NC_010296.1|WP_002731529.1|2618892_2619327_+|bacterioferritin	unknown	unknown	gnl|CDD|225104
NC_010296.1|WP_012265899.1|2625686_2626454_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265908.1|2633378_2633963_-|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_012265886.1|2604643_2605672_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265894.1|2620491_2622105_+|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|380492
NC_010296.1|WP_012265885.1|2603636_2604593_+|DUF4351-domain-containing-protein	unknown	unknown	gnl|CDD|316753
NC_010296.1|WP_080506976.1|2632905_2633112_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_041804089.1|2617787_2618648_+|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.69601e-18
NC_010296.1|WP_012265278.1|2631173_2632244_-|IS630-like-element-ISMae27-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.95756e-18
NC_010296.1|WP_012265898.1|2624399_2625638_-|DNA-(cytosine-5-)-methyltransferase	gnl|CDD|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	2.12745e-97
NC_010296.1|WP_076611860.1|2627095_2628045_-|IS630-like-element-ISMae26-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.84576e-41
NC_010296.1|WP_041804090.1|2619361_2620282_+|FTR1-family-protein	gnl|CDD|272930	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species. [Unknown function, General].	1.62442e-60
NC_010296.1|WP_012265894.1|2620491_2622105_+|amino-acid-ABC-transporter-substrate-binding-protein	gnl|CDD|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	7.19832e-55
NC_010296.1|WP_158303522.1|2632271_2632700_-|hypothetical-protein	gnl|CDD|311102	pfam06951, PLA2G12, Group XII secretory phospholipase A2 precursor (PLA2G12). This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (EC:3.1.1.4) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids.	0.0015418
NC_010296.1|WP_012264998.1|2609482_2610640_+|IS630-like-element-ISMae23-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.35225e-36
NC_010296.1|WP_012265887.1|2605803_2608983_+|hypothetical-protein	gnl|CDD|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	2.66287e-16
NC_010296.1|WP_012265889.1|2615787_2617473_+|dihydroxy-acid-dehydratase	gnl|CDD|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NC_010296.1|WP_002731529.1|2618892_2619327_+|bacterioferritin	gnl|CDD|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	2.24956e-32
NC_010296.1|WP_012265903.1|2629908_2630907_-|IS630-like-element-ISMae24-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.644e-39
NC_010296.1|WP_012265885.1|2603636_2604593_+|DUF4351-domain-containing-protein	gnl|CDD|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	1.87596e-21
NC_010296.1|WP_012265908.1|2633378_2633963_-|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.6724e-39

Protein sequences

>NC_010296.1|WP_012265894.1|2620491_2622105_+|amino-acid-ABC-transporter-substrate-binding-protein
MTTWQCDGIPKDGKTYPQAIAGGHEPCDNTTPDCPICGLPREAMDPVTTTVKTTVVVSPGGTTRVGQKSSWLLPFALIITALTAGLGGWSLLQMLIPKPDTSPVVLEETPDKQTKATFVSNTAKNPDLFSQGEKILLNSTPNKEKGAAAFKKEDWANAIASYQLAATPQANDPEGKIYYNNAKARQKGNQKTIAVVVPIANDPNSAKEILRGVARYQEEFNNSNPGNPLEIVIANDGGGLQSKAIADDLIQSGQVLAVMGHGIDPFSQKAIESYEKEGLAILSPLTTSVSQTGNATLKTIPLKDKSQEVLGSYLEAVAKTLANYASKQENSPSVVLFYNSDSPYSQKLKDSFAKAIKEPGGKIVKAIDTTKANFNAKTAIDQAKQAGAKVVFLALSKDGDRIDQAVAIAQESSGMLLLGGNELYTPDILIQGADSIDGLVLAVPWSFQATDPFAKDALKSWRGRVSWRTATAYDSMKVLGEAIAKSSDRATVVESLNRGITLQGSTTDFNIFNQVPLVRANRGNEGPKGSQYQFDPK
>NC_010296.1|WP_041804090.1|2619361_2620282_+|FTR1-family-protein
MNLSSALPTFIITLREGFEAALVVGIVLACLQKSGRSQLNSWVYRGIGAGVVASVLVGILLGGILLQVDASPSPFVPMLKELLAATFGLIAVLMLSWMLIWMTQQAKSLKSEVESAVKAGLKAKNGAGKAIFLLVFIAVLREGFETVLFILAQFQKDWQIQTFGAIAGLSVATLLGTLLFAGGVKINIRLFFQIMGTLLLLIVAGLLIGVLKHIDAGISLLSEIDPFYRHFCPSLPSSCLLGFQVWDGSQILSDRTFPGLLLKSLFGYRQNLYISQIVAYILFLLLIGGLYFQSLRQRPQTVTSDQ
>NC_010296.1|WP_002731529.1|2618892_2619327_+|bacterioferritin
MRELDRDKTIEQLNEIMEFELAGVVRYTHYSLMVTGPHRIPIVQFFQTQATESLTHAQQVGEILTGLEGHPSLKIAPIEESYEHNIKAILSESLNHEKKSLDLYKALLETVEDASIYLEEFARGMIGQEELHNLEIRKMLRDFA
>NC_010296.1|WP_041804089.1|2617787_2618648_+|tetratricopeptide-repeat-protein
MTYLLTVYRALECRPDSYRDWYDQGNILKERMDYFGALISYEKALEYYPDDYWAWYKRGMILEDLGMYEEAAQSYANAAQVKDDNYWAWYDQGCVYLQELKDYEKAIACFQRALSHSPGDYWAAYRQGEAYRLLKNYERAITFYDLALGARPRDYWAWYRRGDAFRDWGNPQEALFNYRTALDIRPQDYWSWYQQGVILQELQRLPEAIACYEESLKIDQDDRYAWYNAACCYAALGQQEKAIDCLREALDIEPDICGELVRNNFVFDGLRQNETFNDLLSCYSPG
>NC_010296.1|WP_012265889.1|2615787_2617473_+|dihydroxy-acid-dehydratase
MADNYRSRIVTQGTQRSPNRAMLRAVGFGDEDFSKPIIGIANGFSTITPCNMGINDLAMRAEAATRLAGGMPQLFGTITISDGISMGTEGMKYSLVSREVIADSIETVCNGQSLDGVLAIGGCDKNMPGAMIAMARMNIPAIFVYGGTIKPGRYKDCDLTVVSSFEAVGQYSAGKISEEDLIGIERNACPGAGSCGGMFTANTMSSIFEAMGMSLPYSSTMAAEDAEKADSTEESAKVLVEAVRKQILPSQILTRKAFENAISVIMAVGGSTNAVLHLLAISRTIGVELSIDDFETIRQRVPVICDLKPSGRYVTVDLHKAGGIPQVMKILLVNGLLHGDALTISGQTIAEILADIPDQPPSGQDVIRPFSNPVYKEGHLAILKGNLATEGAVAKISGVKTPVITGPARVFESEETCLEAILAGKIQAGDVVVVRYEGPVGGPGMREMLAPTSAIIGAGLGDSVGLITDGRFSGGTYGMVVGHVAPEAAVGGTIALVEEGDQITIDARQRLLSLNVSEEELTRRRNHWQPRPPRYKTGILGKFAKLVSSSSLGALTDLNLF
>NC_010296.1|WP_012264998.1|2609482_2610640_+|IS630-like-element-ISMae23-family-transposase
MPAKDFLDLEEKKNLQKALKEEERAEVRERILMFLLLNDGKTQREIADFIGCSLKTVAPWCVHGDPNNLESLEDGRKNGNHKKATEEYINLLLKIVDEDPKEFGYEFGRWTAARLAEHLEKETRIKLSGSQVRRILRRKKYVYIWAKYSLEDKQDKKLRKAFKEKLDEYLRLAKEKPESIQVWFWDGAFKVATQVRHTAPHECGFSLRVIRRRAWTKKGKRKKVNGQRKRGRVNVMGALRYNDKKRVCFMIKKGNSETFHEQLKKLHEEIRQEWINLGNLPEDFREKGPKIIIILDNASYHKKKDVIEQVEKELPNIRLEFLPAYSPDYNLIELVWHSAKEYIANREFENKEELEKVVNQLLNEGGLIIKWSRKLKNKGNAVNVT
>NC_010296.1|WP_012265887.1|2605803_2608983_+|hypothetical-protein
MTSTLLSILPVVDDVLFNFAQSDGFWANLAIAFGTSYDVVKATELQQQWHSRNFSQIPPIEVLSDEVLGTANGAYSSSTNKIYLSASFLNTASSAAIINVILEEIGHYVDAQINPVDSAGDEGAIFSELVQGNSLDVATLDALRAENDQTTIIVNGEIIQVEQADFTGTNGNDNITGTSASDNIFGLDGNDTLSGLGGSDNIYGGNGNDSLNGGDGSDYFTNDAGNDTINGGSGTDRYEVDYSSASSGLTMTYNTTTGSGTITVGTETDTFTSIESFNGFKGTEYNDVIFGGTESEFYYYYGALSGGSGNDTISGNAGFDEIYGEDGNDVLNGGADNDQLYGGSGNDSLNGDAGDDYFTNEDGNDTINGGSGIDRYEADYSYASSGLTMTYNTATGSGTITVGTETDTFTSIESFEGFKGTEYNDVIFGGTENEYYEGGLKGGGGNDTISGNAGFDRIYGEDGNDVLNGGVGNDQLYGGNGNDLLNGDSGDDYFTGDEGNNDTINGGAGSDSYHADYSYGSSGLTMTYDTAGSGTITVGTETDTFTSIESFDGFKGTDYNDVIFGGTAVEQLYGREGNDTISGNAGSDYIYGENGNDVLNGGDGYDDLYGGNGNDTLQGTDGGTGESDYLVGGSGSDRFILADTTKTFYDDGLTATEGTSDYAEIAGFSTIDDTIQLRGSSSDYLLTVSGSTTNLYINKPGSEADELIAYISNQTALSLTASYFSYVSSPTLPSITLAVSPASVTEDGTTNLVYTFTRTGVTTDALTVNYTVSGTATNGTDYASIPTSVIFAANSATATVIVDPTADTTVESDETVILTLAAGTGYTIGTTTPVTGTINNDDSASISINDVTVSEGNSGTTNAVFTVTLSNPVDTSVTLNYATANGTATTADNDYTAIATTPLTFNVGETSKTITVAVNGDTKVENNETFFVNLSNLQANGRNVTITDNQGQGTINDDDSTVTSQLSINDITVVEGQNSNAILTVTVNNPSTQQITVNYTTTAIDATANVDYTSKTGTITIAPNTATATISIPILNDNLNEPDEAFTVTLSNGSISPLQ
>NC_010296.1|WP_012265886.1|2604643_2605672_+|hypothetical-protein
MKQTTANYDEPWKEALTEYFEAFLYFFFPEVHQLIDWTKIPESLEKELKRITASARTKKRFADKLYKVWLLRGEEIWILIHIEIQSQYEENFSQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEENWSELETSSNPFAIIVMAHLKTKATTGKLPEREQWKWRLIRGLYEKEFEREQIIKLFEIIDTMMTLSTKLQSSLESKIKQFEEERTMPLMSNMELRGRKIGEEIGELRGIERGREIGKEIGKEIGKEIGALEKSRDDIKTVLTVRFGQISSEIEEIIGKMTNPTILEELLKLAATANSLAEFKQSLARIQ
>NC_010296.1|WP_012265885.1|2603636_2604593_+|DUF4351-domain-containing-protein
MTNNIDHDRLFKELISTFFVEFIELFFPQVMDYLDRDSITFLDKEVFTDVTEGERYESDLVAQVKFRGKESFFLIHVEAQESSRKWFNRRMFTYFARFHEKFVLPIYPIVIFSYSQPKKEAISQYVVDFTDFKVLEFNYQVVQLNRLNWRDFLNQPNPVASALMAKMNIAEKERAKVKAECLRLLITLRLNPAKMELISGFIDTYLNLNPVEEIQFQEEISTFSQPVQEGVMQITTSWMRQGIEQGIEQGIEQGIERGIEREKTLILRQLKRKLGEINPALETKIMQLSIDDVEALGEALFDFSTVEDLINWLNTLTA
>NC_010296.1|WP_012265884.1|2602385_2603327_+|hypothetical-protein
MTNPNTDFDTPWKDVLEIYFEDFVSFFFPQAHAGIDWNQGFEFLDKELQQVVRDAELGKRLVDKLVKIYRMAGEETWVLIHIEIQGQREIDFAERMFVYYYRIYDRYRRSVASLAVLGDDNASWRPNQFERELFDCQVSFRFPVVKLLEFKQQWSALAASRNPFATVVMAHLQALETRQNRKKRKEAKLALTKRLYEQGYQREDIINLFKFIDWLMSLPTELEQEFQQELNQYEEEKRMPYITSVERMGMEKGMRESVIDALEIRFENVPSELVNKISQIQDTSLLKNLLRQAITLDSISDFQDYLNQLIKPE
>NC_010296.1|WP_012265896.1|2623573_2623795_+|hypothetical-protein
MNSYQTYLTIDHSQKIILSNLPFKAGTKLAINIQVVEDEKTEADFEALLDKTKGIWTKGDGLEYQQKIREEWI
>NC_010296.1|WP_012265898.1|2624399_2625638_-|DNA-(cytosine-5-)-methyltransferase
MTQVNLQKAANILGVTTAEILTWQKKKLIKGQKINQVDWLFDLEQLTNLKNNQFPGELKILQTVEPTNYTVIELFAGCGGMALGLENAGLKTQLLVEINQDCVNTLRLNRPQWNVINQDIKKIKFSNFRDKIDIVAGGFPCQPFSYAGLGKGLEDLRGSLFFEFARCLQEVQPKIAIAENVRGLLSNKKGETLQLMLEALQEIGYYAAYQVLSAQFLDVPQKRERLIIIATRQDLNIKPIFPQYRNYTISLKKALENCPSSPGVEYKERKKEIMSLVPPGGNWRNLPMDIQKEYMKNSLKNHGGRTGYAKRLSWDEPALTITCSPAQTQTERCHPQETRPLTVREYARVQSFPDDWQFTGNLTSQYRQIGNAVPVNMAYHLGGCLINMLQGDYIGETQPKTEQLSIPGLEVN
>NC_010296.1|WP_012265899.1|2625686_2626454_-|hypothetical-protein
MSYRHNLTQLLEEINLQKPSIKIPTFVTHDLVDTYQICRLIDDFIFEYFQENRKTDTDIADNRDQKIDDALDEFQSKVVEKILKEKQDFKNISLKKKKGFKNIFEFAQCENLYLSNKYVNLISESLGHTLEEIASISSQVFVPEKILNFKIKGVDLVVFNQGIIKYTQLKTKKDTLTGSQSDRSINELKIHPNSVFAAALDMGNSWTISKTKAKENNIELLAGQAFWSMLDLDYETILNKLKMTVRKIEKKLYQV
>NC_010296.1|WP_076611860.1|2627095_2628045_-|IS630-like-element-ISMae26-family-transposase
MRPYSVDFRQKIIDVWKKEKISIRGLAQRFDVAKSFIQKLLKQHKETGDIRPRPQGGSPPTKLNSEQLIILIEIIEANNDATLEELSDLLYEKTQVKVSRATLGRLTQKLNYSFKKKTLHAAEKESDRVQQKRVEYWSEVREIEASKLIFIDESGVNLALLRLYARALIGRRARGRKPQKRGRNISIISAISLEKVVASVNIYGAVDAVTFEGFILKEVLPKIKEGDCLIMDNAKIHLGEMVREIIEQEKARLIYLPPYSPEFSPIENFWSKVKATLRKLKARTYKDLIEGIELAMLEVTQKDIRNWFTHCCYCTS
>NC_010296.1|WP_012265903.1|2629908_2630907_-|IS630-like-element-ISMae24-family-transposase
MRLIRDLNPESQKMLERIYRASKHHQVRERAKCILLSFQGTTIEELSGIFGVTRKTIYNWLTAWEDRKLIGFYNRRGRGRKPKLTEAQGQQVIDWVKEEPKSLKKIQIKIVEEGKLTVSKDKIKRLIKKINMRWKRVRRGVAKTPDEWELEVKLPILEELKKQEKRGEIEIGYLDEMGGDSKPCIPDAWQEEKTTIKLPPIEGKRLNILGIMKRDNQLFYETQVGTVTSEIVINFLDKYCQNIQKKTVIIIDQASIHTSEAFMEKLEEWEKKNLKIFWLPTYSPHLNLIEILWRFLKYEWIEFSAYKDRKSLLAYVKKVLDNFGGEYVINFA
>NC_010296.1|WP_012265278.1|2631173_2632244_-|IS630-like-element-ISMae27-family-transposase
MSGVPNINVAESVEDLKSLLKQQVTSLNFAKVQSLYLLKIKEVETVRHLAVLIGRSERTIHRWLSCYREGGIENLLSEPEKLGRPKKISVEEAALIQNELKDPEGFQSYKEIHFWVSIILEIPTSYITVYRLVRNELQAKLKVARPQNLKQLPGEVKIFQNNLSEQLQALLEKESEKVSQYLKVRFWCQDESRFGCHTIVRDKITIKGIKPLGNFQYNFQYLWLYGLIEPRTGSSFFYEFSHLDGECFNQYLTLFSQAFSEELHIIQLDNAPAHTATDLEIPDNIILFYQPPYCPEVNPIERVWLYLKNLLAWGNFNSLDNLRSKLYHLLNSLSNDTIGYLTGWSWILEALCLSGI
>NC_010296.1|WP_158303522.1|2632271_2632700_-|hypothetical-protein
MMKTTLSRSVMKSEFGKLTSRMALMSISNCVTFLFISTSFLLLIEPVKAQDCGSKNGISIPCWDDFKDSDEGSESLPFYPYAKRPNGCSIPGGRPGEYDNFGSLGYDFSFREPCNNHDHCYYTLGTDANDCNTIFQKVCHTW
>NC_010296.1|WP_080506976.1|2632905_2633112_-|hypothetical-protein
MQWTEVIRDETLIEKDIWRFLSIVFDLERTNQLNLLPDKDLVDLCPPIEPYQVTKSQFFLLRVRMEFI
>NC_010296.1|WP_041804094.1|2633083_2633317_-|hypothetical-protein
MLKKSLSMTITIATLLVVLWQTEGATQSSGREIACSQIINDFKDGTLTTKWNNGRTHREKVFWLFGLCYAMDGGYKG
>NC_010296.1|WP_012265908.1|2633378_2633963_-|Uma2-family-endonuclease
MIAIKENFPQLTPEEYFAWEEKQLEKHELIDGQVYTMSGGSKNHSLISVRFITLFSNHLESTGCEVGNSDLRVNIVETTNYTYPDVSVTCDDHDKTTTQYITYPCLIVEVLSPSTESYDRGGKFRMYRKNLVLQDYLLVSSTSIEMDLYHKNDAGEWLIINYQEGDTVELKSINLSFPIEQVYRNLDLTPETTP

Crispr_ID: NC_010296_18

• CRISPR_ID: NC_010296_18
• CRISPR_location: 2662579-2662675
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_18

Consensus_repeat	Method
TCAGTAAACAGTAAACAGTAATCAG	CRISPRCasFinder

spacers of NC_010296_18

>18.1|2662604|47|NC_010296|CRISPRCasFinder
TAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTT

CRISPR arrays and Neighbor proteins around NC_010296_18

CRISPR arrays

The CRISPR arrays of NC_010296_18

>merge|NC_010296|18|2662579-2662675|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAGTAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTTTCAGTGGTCAGTAAACAGTAAACAG

>NC_010296|18|16|2662579-2662675|CRISPRCasFinder
TCAGTAAACAGTAAACAGTAATCAG	TAAACAGTAAACAGTAATCAGTGAGACACTGTTGATGGGAGTTTTTT
TCAGTGGTCAGTAAACAGTAAACAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041804096.1|2651324_2651753_+|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NC_010296.1|WP_002763227.1|2669847_2670303_-|BON-domain-containing-protein	unknown	unknown	gnl|CDD|335963
NC_010296.1|WP_080506979.1|2672079_2672316_-|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl|CDD|131644
NC_010296.1|WP_016515029.1|2665713_2665863_-|lmo0937-family-membrane-protein	unknown	unknown	unknown
NC_010296.1|WP_012265925.1|2655764_2655965_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265927.1|2656757_2661362_-|glutamate-synthase-large-subunit	unknown	unknown	gnl|CDD|236968
NC_010296.1|WP_012265934.1|2666682_2666865_-|CsbD-family-protein	unknown	unknown	gnl|CDD|225777
NC_010296.1|WP_080506977.1|2655922_2656177_-|DNA-cytosine-methyltransferase	unknown	unknown	gnl|CDD|365904
NC_010296.1|WP_071821136.1|2655557_2655749_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|224937
NC_010296.1|WP_002763237.1|2656356_2656689_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl|CDD|376852
NC_010296.1|WP_012265923.1|2652026_2652509_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012265928.1|2661668_2662556_-|CoA-binding-protein	unknown	unknown	gnl|CDD|223152
NC_010296.1|WP_012265930.1|2663160_2663577_-|YggT-family-protein	unknown	unknown	unknown
NC_010296.1|WP_002803199.1|2665913_2666390_-|CsbD-family-protein	unknown	unknown	gnl|CDD|283241
NC_010296.1|WP_012265924.1|2652753_2655396_+|VCBS-repeat-containing-protein	unknown	unknown	gnl|CDD|379232
NC_010296.1|WP_008206581.1|2671208_2671538_-|XRE-family-transcriptional-regulator	unknown	unknown	gnl|CDD|372700
NC_010296.1|WP_012265939.1|2671534_2671894_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|227024
NC_010296.1|WP_012265921.1|2648279_2650814_+|VCBS-repeat-containing-protein	unknown	unknown	gnl|CDD|379232
NC_010296.1|WP_012265931.1|2663666_2664530_-|cyanophycinase	unknown	unknown	gnl|CDD|131124
NC_010296.1|WP_002763225.1|2670331_2670934_-|hypothetical-protein	unknown	unknown	gnl|CDD|378584

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_041804096.1|2651324_2651753_+|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	6.54675e-14
NC_010296.1|WP_080506979.1|2672079_2672316_-|PEP-CTERM-sorting-domain-containing-protein	gnl|CDD|131644	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms. [Cell envelope, Surface structures].	0.00457893
NC_010296.1|WP_002763227.1|2669847_2670303_-|BON-domain-containing-protein	gnl|CDD|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	1.1198e-05
NC_010296.1|WP_008206581.1|2671208_2671538_-|XRE-family-transcriptional-regulator	gnl|CDD|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	2.39395e-31
NC_010296.1|WP_012265927.1|2656757_2661362_-|glutamate-synthase-large-subunit	gnl|CDD|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NC_010296.1|WP_012265934.1|2666682_2666865_-|CsbD-family-protein	gnl|CDD|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	2.22153e-07
NC_010296.1|WP_080506977.1|2655922_2656177_-|DNA-cytosine-methyltransferase	gnl|CDD|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	1.83498e-16
NC_010296.1|WP_002763237.1|2656356_2656689_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl|CDD|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	8.60407e-07
NC_010296.1|WP_071821136.1|2655557_2655749_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	5.42615e-07
NC_010296.1|WP_012265928.1|2661668_2662556_-|CoA-binding-protein	gnl|CDD|223152	COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion].	8.37502e-81
NC_010296.1|WP_002803199.1|2665913_2666390_-|CsbD-family-protein	gnl|CDD|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	3.79773e-09
NC_010296.1|WP_012265924.1|2652753_2655396_+|VCBS-repeat-containing-protein	gnl|CDD|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	4.50475e-07
NC_010296.1|WP_012265939.1|2671534_2671894_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|227024	COG4679, COG4679, Phage-related protein [Function unknown].	7.97465e-28
NC_010296.1|WP_012265921.1|2648279_2650814_+|VCBS-repeat-containing-protein	gnl|CDD|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	2.60702e-05
NC_010296.1|WP_012265931.1|2663666_2664530_-|cyanophycinase	gnl|CDD|131124	TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. [Energy metabolism, Other].	1.45542e-112
NC_010296.1|WP_002763225.1|2670331_2670934_-|hypothetical-protein	gnl|CDD|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	0.00428084

Protein sequences

>NC_010296.1|WP_012265928.1|2661668_2662556_-|CoA-binding-protein
MKWTDKDQIIMQGIDRPLGKYYAARLKAQGTCLVAGVASGCGGEIIAEIPVFDLVAEAVAEAGEIKTSLILVPPNQVLDAALEAIAAAIPQLIIVTPGVPPLDLVELLKIASTTGTLILGPGSQGVIIPNYLWLGICEPNFYQSGTIGLITRGDRIGDEVAKTLTAAGYGESMAVNLGTDGIIGSNLSQWLQVFEEDDNTEAILLVSQVGGKAEIEAAKYIASAIEKPVIAYLVGLNAGIETNFGDTETIISNQLSYSVAAKNTRKDSLRHFQEAGVTVVEKLADLPASLAKVLC
>NC_010296.1|WP_012265927.1|2656757_2661362_-|glutamate-synthase-large-subunit
MAQQNKPKTDNIHQIDTYWGPRWLVEERDACGVGFIADVRGSGSHQLIEQALLALGCLEHRGGCSADQDSGDGSGMMTAIPRDVLAPWFAENGLNMPESERLGVGMVFLPQAAQERAEAKSHIEEIVNKYNIKILGWRTVPVRPEVLGRQARENQPYVEQILVTSPDLAGSQFDRLLYIARSEVGKQLADDFYFCSFSCRTIVYKGMVRGEILREFYLDLQNTAYSSQFAIYHRRFSTNTQPKWPLAQPMRLLGHNGEINTLLGNINWMSAREPALETEGWTHEELQSLTPIVNPANSDSYNLDSALELLVRTGRSPLEAAMILVPEAYNNQPDLQDYPEIIDFYEYYSGLQEPWDGPALLVFSDGGIVGACLDRNGLRPARYSITNNGYIVVSSEAGTIPLDETTIIEKGRLGPGQMIAVDLEKGEIKRNWPIKQEIARANPYGAWVKSQRTLIDKETAIDIPAPSHLLPRQTAFGYTAEDVDMIIVPMAEQGKEPTFCMGDDTPLAVLSSKPHLLYDYFKQRFAQVTNPPIDPLRESLVMSLTMYLGRRGNILKLGVDDAHLLKLDSPLLNNAELAKVKTSSYRTAELSTLYDLTTGPGGLETAIAHLCAEAAKKVASGAEILILSDRTAPIDEKTSYIPPLLAVGAVHHHLIRSHLRLKASIVIDTAQCWSTHHFACLIGYGASAVCPYLALETIAQWWIEPKTQKLMENGKLEAISLEKALINYRKSVEAGLLKILSKMGISLLSSYHGAQIFEAIGLSADLVKLAFNGTTSRVGGLSIAEVAQEAIAFHSKAFPNLTAKKLENYGFVNYRPGGEYHMNSPEMAKALHKAVAAHSQGEGYDHYETYRQILQQRPVTALRDLLEFNSDRASIAIEAVESIESILQRFCTGGMSLGALGREAHETLAIAMNRIGGKSNSGEGGEDPIRYTSLSDVDAEGHSVTMPHLNGLKNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSSYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPRAKVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRMLMENQLRHRVILRADGGLKTGWDILMAALMGAEEFGFGSISMIAEGCIMARVCHTNNCPVGVATQQERLRTRFPGIPAHVVNFFTLVAEETRQLLAKLGYHSLNEVIGRADLLKVRSDARLTKTESLNLDCLLNLPDGRSDRSWLQHEEVHSNGAVLDDEILADSEIKQAIEQQGTVSKTYRIVNTDRSVGARIAGVIAQKYGNDGFEGEIKLNFQGAAGQSFGAFNLPGVNLHLEGEANDYVGKGIYGGEIVILPPQNANYQPEDNAIIGNTCLYGATGGVLYANGRAGERFAVRNSTAKAVIEGAGDHLCEYMTGGVIVVLGSVGRNVGAGMTGGLAYILDPSLPEKLNPEIVKIQRVGTAAGAEQLKSLIEAHVERTNSPKGKLILANWDSYLGQFWQVVPPSEADSPEAQISAEKTLTSV
>NC_010296.1|WP_002763237.1|2656356_2656689_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MAMLPIPTTYTSYTQAQEHFLQVLEQVELGNSIVIVQRQGHHDVALIAADELSALLEEVYLLRSPANAQRLFQSLNWSQERLSQTAATTSLEELRQELETEIEQEKAAEV
>NC_010296.1|WP_080506977.1|2655922_2656177_-|DNA-cytosine-methyltransferase
MTNEKLRFIDLFAGIGGFRLAFESVGYDCVYSCEIDENCRKVGKRARFRDTRGTLFFPICEIVELKQDTSNQSIFSIFLTSSRE
>NC_010296.1|WP_012265925.1|2655764_2655965_+|hypothetical-protein
MIELHPEFLIKNGKKEFAVLTYEEFMKIKEILEDLEDLEDLIQAKEEEKDSQTYSLDEVKKMLNID
>NC_010296.1|WP_071821136.1|2655557_2655749_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MESIIRKPEKNFWFTDNLQGDVKQLKNFTPNYRLRVGNYRILFEVEEITLVIYRVKHRQNIYN
>NC_010296.1|WP_012265924.1|2652753_2655396_+|VCBS-repeat-containing-protein
MADFLDFVVRDSLLNPLTITLLSTDLEQIDEGTRHSIDAQIDDTDPLGRKGAILAESAQENDLKTGNSQSVSLNTSQSLSSLVSSNLQHIAGCNCSFCALPPFDPNLVKNQPKQSAATVSAALNLSQTFSLNSLAGANHTIYLDFNGHTTSGTSWNTAYNKANIVTPAFDFDGNTGSFSNAELERIQYIWQRVAEDFIPFNVNVTTQAPTNINDLIKSGSGDTRWGVRVAIGGSSYDWFGAGAGGVAYVGSFNWNSDTPTFVFDDQLGNGNEKYTAEAISHEVGHTLGLSHDGRITPSEGYYAGHGSGDTGWAPIMGVGYYQNLSQWSKGEYASANNTQDDLQIITTQNGFGYRTDDTGSTIATAKALTVSGASVSGNGIIERNTDVDFYSFTTGAGAISLTVNPFNRGPNLDILAELYNSAGTLIASSNPTDLLSANITANVAAGTYYLKIDGIGKGNPLTTGYTDYGSLGQYSISGSISNSYGNLTVTNQFIGDFASWSANSNVRVLTGDFNGDGKTDVSLVNQSAGWSTLPVAFSQGNGNFSVTNQFIGDFASWSANSNVRVLTGDFNGDGKTDVSLVNQSAGWSTLPVAFSQGNGNFSVTNQFIGDFASWSANSNVRVLTGDFNGDGKTDVSLVNQSAGWSTLPVAFSQGNGSFSVTNQFIGDFASWSANSNVRVLTGDFNGDGKTDVSLVNKSVGWNTLPVAFSQGNGSFSVTNQFIGDFASWAANPGVDALTGDFNGDGKTDVALINKSAGWNTLPVAFSQGNGSFSVTNQFIGDFASWAANPNVRVRTGDFNGDGKTDVALVNQSAGWNTLPVAFSQGNGSFSVTNQFIGDFASWAANPNVNVLTGNFNGDSKTDVALVNQSAGWNTLPVAFF
>NC_010296.1|WP_012265923.1|2652026_2652509_-|hypothetical-protein
MNPLVNYFRNLQEIHSSQAAVKETSYYGTLETLLNEIGKTLKPRVRCIINLRNQGAGLPDGGLFNVDQFQKNQELEPFTAIFPERGAIEIKGTKEDVKKIAASEQVQKYWQKYGQVLVSNYCDFLLIGRNSQGQPVELEAYSLAPSEAEFWLKTSNPSND
>NC_010296.1|WP_041804096.1|2651324_2651753_+|Rieske-(2Fe-2S)-protein
MNRREFVALVGVGGAMACAPEILATATDQEMTPAQAADGFVKVTGITLKELEAKGSFLDKKSPVGSLLLIWEKKTKKISAVNPTCTHEGCTVKWDTGAQILACPCHTGKFTATGVVTNKPPKGNLTTYQVKVEKDVIFVKKA
>NC_010296.1|WP_012265921.1|2648279_2650814_+|VCBS-repeat-containing-protein
MADFLDFVVRDSLLNPLTITLLSTDLEQIDEGTRHSIDAQIDDTDPLGRKGAILAESAQENDLKTGNSQSVSLNTSQSLSSLVSSNLQHIAGCNCSFCALPPFDPNLVKNQPKQSAATVSAALNLSQTFSLNSLAGANHTIYLDFNGHTTSGTSWNTAYNKANIVTPAFDFDGNTGSFSNAELERIQYIWQRVAEDFIPFNVNVTTQAPTDINDLIKSGTGDTRWGVRVAIGGSSYDWFGAGAGGVAYVGSFNWNSDTPTFVFDDQLGNGNEKYTAEAISHEVGHTLGLSHDGRITPSEGYYAGHGSGDTGWAPIMGVGYYQNLSQWSKGEYASANNTQDDLQIITTQNGFGYRTDDTGNTIATAKALTVSGASVSGNGIIERNTDVDFYSFTTGAGAISLTVNPFNRGPNLDILAELYNSAGTLIASSNPTDLLSANITANVAAGTYYLKIDGIGKGNPLTTGYTDYGSLGQYSISGSVSSPSKDIFIRSPQYAGLLTYNGSGFQPNSIQYDWIGGWKLGSGDKHLAGDFDGNGKDDVFIRSPQYAGLLTYNGSGFQPNSIQYDWIGGWKLGSGDKHLAGDFDGNGKDDVFIRSPQYAGLLTYNGSGFQPNSIQYDWIGGWKLGSGDKHLAGDFDGNGKDDVFIRSPQYAGLLTYNGSGFQPNSIQYDWIGGWKLGSGDQHFVGDFDGNGKDDVFIRSPQYAGLLTYNGSGFQPNSIQYDWIGGWKLGSGDQHFVGDFDGNGKDDVFIRSPQYAGLLTYNGSGFQPNSIQYDWIGGWKLGSGDQHFVGDFNNDGKDDVFIRSPQYAGLLTYNGSGFQSNSIQYDWIGGWKLGSGDQHFVGDFA
>NC_010296.1|WP_012265930.1|2663160_2663577_-|YggT-family-protein
MNHDRDDETNLERRQELLHDEEAFRLDQEEKRLRSARRSNTLNWIINSIFGLAGIGQILLVMRFLLRLFGANPQNQFAQLINHLSAPFIAPFSTLFISPASSGGANIFDVNIVIAIVAYALLSYTLHGYNLHFFLKSL
>NC_010296.1|WP_012265931.1|2663666_2664530_-|cyanophycinase
MESTKERGQLIIIGGAEDKEGDCQILREFVRCAGGTKAKIAVLTAATSEPRSAGETYTRVFERLGVEDVRVLDTIHREDADDPENLKIIEEATGAFFTGGDQALIIEHIKGTQLDALLHQRNREGMVVGGTSAGAAIMPDLMIIEGDSETNPRMDAIEMGPGMGFLHSVVIDQHFAQRGRLGRLISALLQQPANLGFGIDEDTAVIVDGDEFKVVGRGAVTIVDESEATYDNLDELLKDEAMAVCGVRLHILPQGFRFNLKTRKPVFSRSIELKDSNPKKEAEVERE
>NC_010296.1|WP_016515029.1|2665713_2665863_-|lmo0937-family-membrane-protein
MFDLVWTAVVILFILWLLGFSINIGGSLIHLLLVLVLIGVVYNLFMRRR
>NC_010296.1|WP_002803199.1|2665913_2666390_-|CsbD-family-protein
MSLQQIRRFFVTIILTIMLAITIAFDFGTTNSWAATLPTQSQTQIASMNRAKAVTKNIEGKAQEAIGNMTGDPKDQMMGKAKQVESQARNAAEDIKDQMKLKGRAKAVTKNIEGKAQEAIGKATGNRQDQVAGKAKQVESQVRNAVEDVKDTVQDILN
>NC_010296.1|WP_012265934.1|2666682_2666865_-|CsbD-family-protein
MSLKDRTEATAKNIEGKVQEAVGDLTGDSKAQAEGKEKQAEAKVRHTIEDVKDEVKKIID
>NC_010296.1|WP_002763227.1|2669847_2670303_-|BON-domain-containing-protein
MKKITTLILSSLLLIGTVACENNAKTSTNAPSSTEETGQVPDTKTVQKNQSDASSQVRRNQLNSDIRAREQRNNLTGGDADRANSDLSSEVRSKLEANIPKGQLTVSAKDGAVVVSGTVETQEQLDKIDPLAKQIKGVNSVKVTAKVALSN
>NC_010296.1|WP_002763225.1|2670331_2670934_-|hypothetical-protein
MTLTNRKRAVGIFSSYQEAEKALNGLRDDGFAMNEVSIIAKEPERLEQSNRIGETRVQELTETKTTHIDEGAKTGAAAGGAIGGLTGLLVGLGILAIPGVGPVMLAGAAATAIATTLAGGAIGTATGGLVGGLIGLGIPEDRARVYHDYVVRGDYLLIVDGADADILQAETILKRRGIREWEIYNALAIEGYVDPPASRL
>NC_010296.1|WP_008206581.1|2671208_2671538_-|XRE-family-transcriptional-regulator
MSYLEITRGTTNVFADLGYPDATERQTKTRLALAVNELLKSRKLKQREIAILLNIPQPKVSALKNYRLDQFSVERLMEFLTALNQDVEIVIRPRSDTKEVGHISVLAVQ
>NC_010296.1|WP_012265939.1|2671534_2671894_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSREKPLYWVASAKKDYLTFPAEVQDDMGYALGLAQLGGKHPKAKPWKGEGAGVFEIVEDHRGDTYRAVYTVRFAEVVYVLHAFQKKSKSGIKTPQEDVKLIVERMKRAQADYESRGTK
>NC_010296.1|WP_080506979.1|2672079_2672316_-|PEP-CTERM-sorting-domain-containing-protein
MDILSDYDVGFAQLGYLGDGSQGRAYQQLFQLAPVSSSVPEPSSVLGLLAFGTLGAGAVLTRKIKPSKSTGKELEKDS

Crispr_ID: NC_010296_19

• CRISPR_ID: NC_010296_19
• CRISPR_location: 2784147-2784258
• CRISPR_type: TypeI-D
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: WYL,cas3

Consensus repeat of NC_010296_19

Consensus_repeat	Method
TTTCCACCTTTTCGAGTCGTTTATCCATCCC	CRISPRCasFinder

spacers of NC_010296_19

>19.1|2784178|50|NC_010296|CRISPRCasFinder
CCCGACTTTCTCGGTTAAAGCGACCAATCCTATCGATTTAACTTGTTCGT

CRISPR arrays and Neighbor proteins around NC_010296_19

CRISPR arrays

The CRISPR arrays of NC_010296_19

>merge|NC_010296|19|2784147-2784258|CRISPRCasFinder
TTTCCACCTTTTCGAGTCGTTTATCCATCCCCCCGACTTTCTCGGTTAAAGCGACCAATCCTATCGATTTAACTTGTTCGTTTTCCACCTTTTCCAGTCGTTTATCCATCCC

>NC_010296|19|17|2784147-2784258|CRISPRCasFinder
TTTCCACCTTTTCGAGTCGTTTATCCATCCC	CCCGACTTTCTCGGTTAAAGCGACCAATCCTATCGATTTAACTTGTTCGT
TTTCCACCTTTTCCAGTCGTTTATCCATCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041804110.1|2782697_2783279_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002778659.1|2795281_2795716_+|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|366864
NC_010296.1|WP_002800489.1|2781665_2782388_-|UMP-kinase	unknown	unknown	gnl|CDD|239787
NC_010296.1|WP_041804111.1|2788393_2789062_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266041.1|2793967_2794387_+|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|376187
NC_010296.1|WP_158303523.1|2776683_2776857_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266040.1|2791632_2793798_+|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl|CDD|187841
NC_010296.1|WP_012266024.1|2771957_2772836_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl|CDD|234597
NC_010296.1|WP_012266042.1|2794428_2794827_+|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|366864
NC_010296.1|WP_002797921.1|2783500_2783956_-|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl|CDD|235443
NC_010296.1|WP_002797919.1|2781130_2781679_-|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NC_010296.1|WP_012266031.1|2778843_2780124_-|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NC_010296.1|WP_012266036.1|2786060_2788184_-|serine/threonine-protein-kinase	unknown	unknown	gnl|CDD|270916
NC_010296.1|WP_012266043.1|2794819_2795278_+|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|376187
NC_010296.1|WP_041804108.1|2776917_2778597_+|DnaJ-domain-containing-protein	unknown	unknown	gnl|CDD|238121
NC_010296.1|WP_041804107.1|2774463_2775630_-|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl|CDD|235654
NC_010296.1|WP_012266025.1|2773198_2774140_-|glycosyltransferase-family-1-protein	unknown	unknown	gnl|CDD|379238
NC_010296.1|WP_012266039.1|2790669_2791533_-|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl|CDD|379100
NC_010296.1|WP_012266038.1|2789431_2790601_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NC_010296.1|WP_012266035.1|2784655_2786038_+|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl|CDD|239562

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_012266040.1|2791632_2793798_+|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	3.6e-112	369.6	0.0
NC_010296.1|WP_012266039.1|2790669_2791533_-|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	1e-12	43.2	0.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002778659.1|2795281_2795716_+|DUF86-domain-containing-protein	gnl|CDD|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	1.3671e-19
NC_010296.1|WP_002800489.1|2781665_2782388_-|UMP-kinase	gnl|CDD|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	5.04165e-145
NC_010296.1|WP_012266041.1|2793967_2794387_+|nucleotidyltransferase-domain-containing-protein	gnl|CDD|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	1.16051e-24
NC_010296.1|WP_012266040.1|2791632_2793798_+|type-I-D-CRISPR-associated-helicase-Cas3'	gnl|CDD|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	1.1044e-117
NC_010296.1|WP_012266024.1|2771957_2772836_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl|CDD|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	2.99256e-158
NC_010296.1|WP_012266042.1|2794428_2794827_+|DUF86-domain-containing-protein	gnl|CDD|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	3.49677e-16
NC_010296.1|WP_002797921.1|2783500_2783956_-|type-II-3-dehydroquinate-dehydratase	gnl|CDD|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	7.51337e-88
NC_010296.1|WP_002797919.1|2781130_2781679_-|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	3.10597e-101
NC_010296.1|WP_012266031.1|2778843_2780124_-|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.48958e-120
NC_010296.1|WP_012266036.1|2786060_2788184_-|serine/threonine-protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.82647e-57
NC_010296.1|WP_012266043.1|2794819_2795278_+|nucleotidyltransferase-domain-containing-protein	gnl|CDD|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	1.0442e-19
NC_010296.1|WP_041804108.1|2776917_2778597_+|DnaJ-domain-containing-protein	gnl|CDD|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.69532e-82
NC_010296.1|WP_041804107.1|2774463_2775630_-|pyridoxal-phosphate-dependent-aminotransferase	gnl|CDD|235654	PRK05957, PRK05957, pyridoxal phosphate-dependent aminotransferase.	0
NC_010296.1|WP_012266025.1|2773198_2774140_-|glycosyltransferase-family-1-protein	gnl|CDD|379238	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1.	1.09053e-06
NC_010296.1|WP_012266039.1|2790669_2791533_-|WYL-domain-containing-protein	gnl|CDD|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	7.01423e-06
NC_010296.1|WP_012266038.1|2789431_2790601_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.54495e-118
NC_010296.1|WP_012266035.1|2784655_2786038_+|Rieske-2Fe-2S-domain-containing-protein	gnl|CDD|239562	cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The Arabidopsis-accelerated cell death gene ACD1 is involved in oxygenation of PaO.	1.81553e-84

Protein sequences

>NC_010296.1|WP_002797921.1|2783500_2783956_-|type-II-3-dehydroquinate-dehydratase
MNKLSILVLHGPNLNLLGKREPNLYGNVNLEAINRFLNEEATRLGVNLTAHQSNQEGQLVDWIQQAWGQHDGILINAGAYTHTSIAIRDALLGTKMACVEVHLSNIYKRESFRHHSYIADIAIGQISGFGAESYRLGLWALVDYLQKNREG
>NC_010296.1|WP_041804110.1|2782697_2783279_+|hypothetical-protein
MVSDRLLLVNKSNQGAANIDTFDWVYGFQDGTRLMGKVCGYLDPDSNRLLDPENCSAIYQNAQGQVLSRWQAGDFIAFELTTTGEALLIVASNDNCVSNSLCLVSGISRSCAQVSDEGKSLVREVFQYPAWSFQGDNSTSKPAFSWNCSVSPFFPFVSLRFNLQSTSSKKFYRWTVSPYFPFCPLLEVGESLA
>NC_010296.1|WP_002800489.1|2781665_2782388_-|UMP-kinase
MAYKRVLLKLSGEALMGNLGYGIDPMVVSAIAQEISEVVAQGIQLAIVVGGGNIFRGVKAASAGMDRATADYIGMIATVMNAMTLQDALERAQVPTRVLTAIAMQELAEPYIRRRAIRHLEKGRVVVFGAGSGNPFFTTDTTAALRAAEIDAEVVFKATKVDGVYDSDPSHNPNARRFQSLTYGHVLTHDLRVMDGTAIALCKENNIPIVVFDLSVTGNIVRAVKGEPVGTLVGGFCEVS
>NC_010296.1|WP_002797919.1|2781130_2781679_-|ribosome-recycling-factor
MKLAEVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVAIRNIRRDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDLLTTKEKDIMTV
>NC_010296.1|WP_012266031.1|2778843_2780124_-|trypsin-like-peptidase-domain-containing-protein
MTRNIFNDNISPRNEGNPKRSKSSAMKKLFAYSSLLVLGAGLGIGATYAYSQNPLELAQNIAPAATNPRPSTPAAAAPSTLVMPTNFVASVVQEVGPAVVRINASREVNGGGDFSEFANDPVFRRFFGSQIPERGEKQVQRGTGSGFIISNDGKIITNAHVVEGADKVTVTLKDGRTIDGKVLGSDPLTDVAVVQVEASNLPRVKLGNSDSLQVGEWAIAIGNPLGLDNTVTTGIISAKERNGSQIGASDKRVDFLQTDAAINPGNSGGPLLNDRGEVIGVNTAIIQNAQGLGFAIPIKTAQRIAEQLIATGKVEHPYLGVQMVQLTPEVKEQLADSPMADNWTIPDDSGVLLVRVMRDSPAAAAGLRSGDVLRSVGGKNVTDPDAVQEIVANTQIGDNLPVEISREGQKINLNIQVGSLNTANKS
>NC_010296.1|WP_041804108.1|2776917_2778597_+|DnaJ-domain-containing-protein
MAKKLDFVIPAVGGVTGANLSACLGNIGLVGGFGGISVGLVGMTGIGILTSSAIYASLQGLETNDHNVGLALGIGSLGGIGIYSTFGGVGVAVKGTAFGVGVGSMAIAGGLVGLGIYGVMKMLSPTYSDNNFYRNLEFFDRITREYEEALFWQEVTGKYENLEAELQQLLEEVSVQENQQLDSTEITIPERLSWQCFQTLKGHQANIGAIDVSPDGKIIASAGEDQTIKLWQRETGKLIYSFVGVNEPIQTLAISPNGKSIIAGGLDGRISQWQLDTKQYKSSFFARVNAPHSHDGVILQLAFAANERFIVSASNDKTLRIWGYHTGELKRTLIGHEEAVNTCAISPDSQIIASGSDDKTIKLWRFDNSYAYQTFIGDRAAVNSLAFSNDGQYLISGGSDKTIKIWDIKTGEIIKSWQAHEQAIISIAINPHRHLIASASRTEIKIWQGQTGELIKILRGTAPLKFSPDGHFLITGSYGDKVKIWSEMLGELEIFPPDSDDWWEVLEVSKNASFSEVKQRYYQLARQYHPDHNSSVMAIKIMQKINRAYERFLFSISQR
>NC_010296.1|WP_158303523.1|2776683_2776857_+|hypothetical-protein
MPLTGKRVWGVGCGVWGVGKETSFICGGENFFIGTDLKEAVGRGQEGKVPFWGVSRR
>NC_010296.1|WP_041804107.1|2774463_2775630_-|pyridoxal-phosphate-dependent-aminotransferase
MKDLLSRMDGVQTPIIPVVGQLIKANPGTISLGQGIVSYYPPREAIESLSLFLANPKNHQYQSVAGIPPLLAVIRQKLAEDNRVEISDKQAIFVTAGSNMAFMNAILAITSPGDEIILNTPFYFNHEMAIKMADCQVILVATDKNYQLRPAAIEEAITEKTKAVVTISPNNPTGVVYPENTLREVNRICQKKGIYHIHDEAYEYFTYNHARHFSPAAIVGSESWTISLFSLSKAYGFASWRIGYMVVPEHLSEAINKIQDTILICPPVVSQYAALGALQVGKSYPLEQLKTISQVREICLNALESIGDICDVATAEGAFYFFLKISTDKNDFQLVKTLIERQRVAVLPGSTFGLTEGCYLRLAYGALSPETALTAVERLVKGLRYFSQ
>NC_010296.1|WP_012266025.1|2773198_2774140_-|glycosyltransferase-family-1-protein
MQTIYFYAPGEIRQKNIKEDQTLWTGDHSNFTAWIAQTYFHLKQAGFPCEIAREIPEQGILIADRDTLDNDYPFLDKVMLICVKSDKEYHPSAHLHIVYNPSNWEKVKDSIWNPYLISHWPMPGLIPRDRERNTLIENISYIGTRGQLAPELRSEAWRESLATLNCHWMPIGDKFQWNNYTNLDVIVAARSFDSRNYPNKGSIKLINAWHAGVPALLTPELGFLAERKTELDFIIIHSLEEAIEAVRRLKSSPELYQKMVENGYKRAKEHTIETTLNQWISFFEDVAFPTYEKWSALSQIEKRWGSSLLGMVR
>NC_010296.1|WP_012266024.1|2771957_2772836_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MNQDFPHISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETTVTAIDRDQSALEAAKISLAPYLDSRLTLWWGNFADYDGQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDMRMDRCQSLTAADIINHWHEKELADLFYQYGEERLSRPIARSIVQKRPFTTTTELAAVIASSVPASYRYGRIHPATRVFQALRIAVNQELDSLQQLLDQAPHWLKSRGIIAMISFHSLEDRLIKYGFRENNSLKIITKKPIIPSREEQAKNPRSRSAKLRIAQKIESEVI
>NC_010296.1|WP_012266035.1|2784655_2786038_+|Rieske-2Fe-2S-domain-containing-protein
MLTSTATHPVGGTDIDRFDCRQVWYPIYYVKDLDKKQPQRFTLLEEDLVIWWDKNQQEWRVFEDKCPHRLAPLSEGRLNESGHLECPYHGWSFSGGGNCEFIPQQPENSQANTSRRACVRSFPTAIRQGLLFVYAGNPENAPLTAIPIIEPMEEDADAWICLDTFRDLPYSAVTLIENIIDSSHVPYTHHLTIGNRANAAPMELEIIESNRQGFKGIWPEGPRKGKLGQQYSNFIAPGFIYHDLTSEKFGRTLTAVYATPIRQGECRLFARFPFKFNSKLPKFFIKLTPTWYSHINQNAILEDDQIFLYYQERYLQAQGDSRNFSQACYLPTKADLFVFEYRNWVNQYQADPFAGQPFPPRQSKEILLERYHSHTKNCAVCQGALKNINRLRGLTLAIAIVLGLSLPLLALIFGQSALLPVTVLTALTVLMVAVYWRLGELIKQFYQGRELLPRNTGKKR
>NC_010296.1|WP_012266036.1|2786060_2788184_-|serine/threonine-protein-kinase
MELAAGKILSHRYQIIRQLGKGGFGQTFLACDRQLPNQNRCVIKQFKPQCQDAETVAIARRLFETEAKILQELGIHRHIPCLFAYFEENGQFFLVQEYIEGEDLAREITAGVYRQDEGKVVALLTEILSILEFVHHKQVIHRDVNPFNLIRSSQDHQLVLIDFGAVKQISTQVVKEGKTVSTIAIGTPGYFPSEQAQGYPRFSSDIYAAGMIGLQALTGKDPEDIPLDARTGEILWQHLAMTSAEFSYIIERMIRYDFRQRYTSVSEALIDLRKLEKIHHLDPKTTQSVKPQGPIARPGKSWLTKILVVSGTIGLIAGAYLGFDYWQNSRNSLDYYQQGQTFYQLKRYTDALNSYGQALKINPDYLEALQGKADALLALKRYSEALNTYEKAIQINPDSAWQAWLGRGQALDKLGKNQEALESFDRVLSFNPAASQAWQGKADIYLELQQYSAAQKALEKLLTFQQNDAKIWYKKGWSLQNLEDYEGAVKAYDQALALESDNALIWYQKANSLYQLNKINDALESYSKAGQFNPQFSQAHYSQGIILQKLGRKSEALEAFTQATKANSNYYQAWLNQGALLHQMERFQEAIASYEKARRISSQKAEVFIGIGNAWYRLGDYSQAIIAYQQAIQRQKDNPETWKSLGNSCFKLGQYERAIQAYQESLRYRSNDREVQTQKQLAETRWQELQQSSQNQTPKVDNEEQVP
>NC_010296.1|WP_041804111.1|2788393_2789062_+|hypothetical-protein
MSMNPVTRASTALLITLLMGSMSGTFPVLAQSNINRQRLIAQQISIPVGTVIPLNYEKADKILVSKSDVIPLTLTVARDIRDRNGIVVIAAGSEVKGTLEAAGRGVRFIADEIRLDGGNRTIPLNATSRLITTTETLRKGAKTQDILGGTLAGAGAATAIAALTGDRKIEVLDVLAGAAVGTLAGWGLPAAGIVGGSSVQLYSVNPDRDLNITLQSPLVIRD
>NC_010296.1|WP_012266038.1|2789431_2790601_+|trypsin-like-peptidase-domain-containing-protein
MKLPTGLRRTITHALATFLGVMLGFSSLAAVNAQNLPTAAADLARIPPEMTAESFVAKAVARTGAAVVRIDTEAIITRPNSPFFDDPFFQEFFGEQFRLPTQQRVAGQGSGFIIDGSGLILTNAHVVDNADKVTVTLKDGRSFKGEVRGTDEITDLAVVKINPQGENLPVAVLGNSSSIQVGDWAIAVGNPVGLDNTVTLGIISTIGRSAAKAGIPDKRIDFIQTDAAINPGNSGGPLLNAQGEVIGINTAIRADAMGIGFAIPIDRAKQLQATLESGQKVAHPYIGVQMVNLTPDLARANNQNPNSAMIVPEVSGILVVKVLPNTPAEKAGIRRGDVIVKANNQPVSDGAELQEMVEKTGIGQSLPLRIRRGERAIDLTVITAQMSNQ
>NC_010296.1|WP_012266039.1|2790669_2791533_-|WYL-domain-containing-protein
MSRIGQSITLSVSEKEKQALEILASEFGLFWGDKPNISKLIKEIARNKLKIAPNHDWKPDRLQMLQQAIDSLIDAGQIPIALELTKLLLERSELPGPLRKELEGRLDNPPPPWRLELDRCILRQQPFQLSYQDAGDRIWEFHLYHAAINRHEDRLYLDCWCEETEGNQDISELQHNWSLRIDRIPNDSLITPIPRGKWRNQLDSVSAEFKLFDGLARSYRTKSAIDIANELISNDPLVRQITRQVTSSFWFFREILPYGEDCLLISPEKVRKRFYDKLQRLYRRYES
>NC_010296.1|WP_012266040.1|2791632_2793798_+|type-I-D-CRISPR-associated-helicase-Cas3'
MGNYQVTLKPVYSCPADEIPDGIKVPQGWRLSWHQVETWKALNDPDIDVIFNTAMTGDGKSLAAYLRTLQGYFPIMGLYPTNELARDQRGQIEAYIQRFQPTDQPRVNLLTGPELELYAERDGKTKAIALETRSKQSEILLTNPDIFHYLHRGAYLTPYDNPDQLWNRIDKHFDLFLFDEFHVFGTPQVASIINTMLLIRRANRGKRYLFLSATPDEGLLKRLDKAGFRYRSIDPVREGKYRFPDTPEEANSLAQQGWRQVTSEIELSFIPLPSSFQTSENWLKENKERILDYFKRYPGSKGAIILNSIASVKRLLPIFRELLATIGLTVGENTGLSGTREKLASLNRDLVIGTSTIDVGVDFKINFLIFESSDAGNFIQRFGRLGRHSGYDRKGTAVKFANFTAIALVPKFFLERLFEKKDAPLQVGERYDRIQLQEAIKSNYRHINNFEGYYQRWGAVQSFQLWWNLGSPKIKSQYGESRQKFQQECEEVFDTSLKRVAGRVKGWADEWKELSGKNGNPIFEDASSFRGSSPLLCGLYDSTEPEEGDRFKTYDLPSILGNLEVEVWRKGEFKRQIEATETPIARGRFDYCLTFLNLKGYREERLNWRFTYDGDLGEIASAWKVQVLTGIGVWQPDNPWLDRISRELRDLALVSFVLAYPVAAVRQRLQLPMHFGIYPISDESSLHSPLSPYSIAIGQSALLLDTLAHRFKGQGGEVWIC
>NC_010296.1|WP_012266041.1|2793967_2794387_+|nucleotidyltransferase-domain-containing-protein
MNRLVEKITAIVEKLPNLKLLILFGSRARGEHKPDSDWDFAVLYEERSDQKDISSLLKIYSLLEQALEIPDDKIDVVDLKECSPILAHYVARDGQLLYERETGIFEGFKEKFLMNPEESKALYRQLRNNLEISLREKGV
>NC_010296.1|WP_012266042.1|2794428_2794827_+|DUF86-domain-containing-protein
MNQYLAELSEYGSITLEDYRTLRERQLAIERLIQLIVQTGIDINYQILKCLDIESPNNARDALFQIVELGILEEHLAVQLAESIKLRNLLVHLYKKIDPDIVHSSIANILRDYPRYQRSIVQYLDFLEAENG
>NC_010296.1|WP_012266043.1|2794819_2795278_+|nucleotidyltransferase-domain-containing-protein
MVKNTKELKIINTVNRITTTVEKIPNLKLLILFGSRARGEHRPDSDWDLAISHDETNRQTHIKEISNDYLTSLSILSELFEINRDLIDLIELDRCSPLMKYQVARDGKLIYEKNTGDFLKFRVRAWKEYADTAKFRKIQKDSIDLWLKQWGV
>NC_010296.1|WP_002778659.1|2795281_2795716_+|DUF86-domain-containing-protein
MEREIVTVRIRLMIKYLNRLRGFESVTLSEYLDNFDYQLMVERLIELLVESSSDINSYLLLQLHNVTPATYYDSFIEAGKNGLTTRELAGELAKSSGMRNRLVHQYEAIDNELVFKAIPIALSQFPLYLKQITDYLDSLEVKDA

Crispr_ID: NC_010296_20

• CRISPR_ID: NC_010296_20
• CRISPR_location: 2814769-2822884
• CRISPR_type: TypeI-D
• Repeat_type: I-D,II-B
• Spacer_info: 112 spacers
• Cas_protein_info: cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5

Consensus repeat of NC_010296_20

Consensus_repeat	Method
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRISPRCasFinder
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRT

spacers of NC_010296_20

>20.1|2814806|40|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTCAGAATTCGACACAATTATTGCTATAAAAAATGATAGC
>20.2|2814883|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATGGATTTTACATGGGATGAAGAAAAATCAAAATT
>20.3|2814955|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CATGAAGGATACCAGATAGAACGTAACGATGGGACG
>20.4|2815028|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CAATGGCAAGTGGAGAGGGGTGTTTATGATTTAAA
>20.5|2815100|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GAGAGATTGCCTTGATCGGAATGTTACCTCATCAAT
>20.6|2815173|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AACTTAATCCTCTAAAAAATCATGAGAGTCATAGA
>20.7|2815245|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GGAGAATATCGGTATCTCTGAGGGTGCGTTGCGGGG
>20.8|2815318|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTGGTGAATGTGAGACTGCAAGTGGATAGGGAGCC
>20.9|2815390|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGCCTTAGCCAACTTCCGTAATTCGTTAATTCCT
>20.10|2815462|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCCCCAATAGCCTTTCTTGGCTAATTTGAGGGCTT
>20.11|2815534|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AGAAATGTGTCGAATTGGGCAGTTTATTGACCTA
>20.12|2815605|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACAACAATATCTTCAGAATTAGTCAAAGGATGATCCC
>20.13|2815679|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TAATCACTTTTATTGCTGACTTTGCTGTACATCTT
>20.14|2815751|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA
>20.15|2815824|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT
>20.16|2815896|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCGATTAATCATCCTAAAGATATCGGCAGAACCG
>20.17|2815967|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTCTACTACTCCATCTACCCAATAAAAAACCCG
>20.18|2816037|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAGACTAGGAACATCAGCATAAGTTGAAAACAAA
>20.19|2816108|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT
>20.20|2816180|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT
>20.21|2816251|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT
>20.22|2816323|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AACCCTGATTCTAATGCAAGAGAATTGACTTCTA
>20.23|2816394|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC
>20.24|2816465|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCAGGATTCGGTCCTGTGTAGTGACATCTATAGTT
>20.25|2816537|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAATTTAGTTTTGACTGCAATTAATACTATCTCATC
>20.26|2816610|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACCTGAGAAAGCACGCTGGCGGGCGAGGAAATATA
>20.27|2816682|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTAAAATTACTAGAAGGGGGCGTGGTATGATTAG
>20.28|2816753|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CGAAATTTTACTCGAAAAGCGTCGATTACTACCGG
>20.29|2816825|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AATGGTTTGCATAATCCTAATTGCTACATCTCCC
>20.30|2816896|39|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GATGCCATTGGTGAGCCGTCTTTATCTGATGATGAAAGG
>20.31|2816972|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTTATCCCTTAGCGAAAAAAAGCAGATTGCCTCTT
>20.32|2817044|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCAAAACAGCCATGGCATACTCGATGATGTCCAGGCT
>20.33|2817118|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTTTTTTAGCACCCAATCAAACCAACAACACGCAAAG
>20.34|2817192|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATTATACTCCCTAAAGCAGCTAAATTGTTTCCCGCCG
>20.35|2817266|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTGCTAAGACTAATACTGCATATTATTTTGGAGATG
>20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GGGATTGTTTTCTTTTGGGATCGAGTTCTCGA
>20.37|2817408|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TGATAAATTGGCATCTCTTTTAAATCTTGCTACT
>20.38|2817479|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CATCAGGCGATTTCAAAACTACGCGAATTGGAAG
>20.39|2817550|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATCCACTGCCCGACCCTGGGGACAATCCATACTAAG
>20.40|2817623|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AATCTTTCGCGAAACAGCATCGCTAACTTAAATGG
>20.41|2817695|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACAAGCCTACAAATCGAACACCTACCCCTGCCCC
>20.42|2817766|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGCTTGATAGAATCGTGGTACAAAAAAGCAACCA
>20.43|2817838|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTTTTTAATAATCAGATTAAGCCTAATTTAACCGA
>20.44|2817910|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGGATAAGGCTGAGACCCGCATAGCCGATCGC
>20.45|2817980|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACGATAATTGCTGAATCCCAATCCTCACGAATTTT
>20.46|2818052|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TAAATGTTATTAATTGGGCGTTAGAGAAAGCACAA
>20.47|2818124|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CGATTTCCCCAAAAATACGATCTTCTTTGTTTAGG
>20.48|2818196|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTTGATTGGAATTGATACTCAATTTCTCTTTCTC
>20.49|2818267|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CAATTTTCCCTAAAACAACATCTCGATCATGATTC
>20.50|2818339|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GGGCTTAACGCGATCGGGTTCCTAACCGACTTTCA
>20.51|2818411|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAAGTTGCATTCTGAAAGTCTAAAATCTCATTGCC
>20.52|2818483|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAAGGAATTTTAACAGGGGGATACATTTGTTACTAG
>20.53|2818556|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTGATCAAGATTAATCGACCGGGGAATTAAATTAGC
>20.54|2818629|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCAGACTAACTCCGAAGGGAGTCTTGGGGAAAAA
>20.55|2818700|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAGTTCCAATGGTACGAAACAGCCTGGGCAGACC
>20.56|2818771|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AACGATTTTAAGGATTCCGGGGATGCAGTCTCGCTC
>20.57|2818844|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATTCTAACTTAAACTCAAGAAAAATCAATAAACA
>20.58|2818915|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCCCTCATCTTGAATTGATAGCAGCGACGCATCATT
>20.59|2818988|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCCACAACGACGACGACCCCTTAACAGCATAAATC
>20.60|2819060|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCGATTACTTCTAAAACTTGAGACGCTCTGCTAGG
>20.61|2819132|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AGGCAAGTCTTAGCCAAAGTTCTTAAACTACTATC
>20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCGGAAAATAATCTTGATGTGACTCTTGATGCCC
>20.63|2819275|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTTAAAGATTTAATAGGCATTGTTTTTACTCCTAA
>20.64|2819347|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCATCGTAAATTCTGACTGCATAGCTATCTAATT
>20.65|2819418|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGTAAAAATTATCTACATAAATCATCAAAGTTCCT
>20.66|2819491|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCAAAACTACAGCGACCCTACTGGTAACTTCCTGA
>20.67|2819563|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TGCTGAATGAACTTATATATTGTGATGCCTCTAGA
>20.68|2819635|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTAATACCTTGAAAGAGCTAGAGTAGTAATCTATA
>20.69|2819707|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TGTAAGTCACCCCATCATCATTGTTCCCACTACCAG
>20.70|2819780|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTCCGTGAATATTTATACTTACATTCACAGACTC
>20.71|2819851|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTTTTTAGGAATGATGCCTGCCGTGGCAATGTCT
>20.72|2819922|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTCTATAGGAGTATCTGGTAAATACCCTACTCCCTG
>20.73|2819995|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTCCCTATATCGCTTCTTTGAGCGGGGAGATTTAATT
>20.74|2820069|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTAATTCAGGCAAAAACTTCGGTTTTTGTTCAA
>20.75|2820139|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TAAATATTCTTAGTTTTAATCCTCAGGCAAACCC
>20.76|2820210|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AGTTAATAGTGGCTAGAGGAGTAGGATTAAATTGGC
>20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTAAAAGCAGGTAGTTTTAACTACCTGCTTGATT
>20.78|2820354|38|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGTGATCGACCTTTGCCTGCTTGCCAAGCTCTCGATC
>20.79|2820429|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTTCTACCCGCAATAATAGCGCTTCGATCTCTTG
>20.80|2820500|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTTGCTGTGGACTATAAGGGTCGCAACGCTCGATCC
>20.81|2820573|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATTGACAGATTACAGTGGGCTGAAACCCACCGG
>20.82|2820643|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCATTGGCAGATTTATTCAAATTAGCGATCGCATT
>20.83|2820715|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATTTTAGACATTTTTAGGTCTGTGCCAAGAATGCA
>20.84|2820787|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CGTTAGTTTCAATTGAAGCATCAAGATAAATATCATC
>20.85|2820861|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTAATATTAAATTATAGAGAAAGACGACCGCAACTAA
>20.86|2820935|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATTTTTTTTAGCGACCCTTCGGCTTTGCTCGGGG
>20.87|2821006|40|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCATCCGTCTATCATTCACCTTTTTATAATACCATGAAAA
>20.88|2821083|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATGAGCCCATTAGTTGAGGGATTCACAAAAGTTT
>20.89|2821154|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAAAAAGGAGGACAAGTTGATGGGATTTGTAAAAC
>20.90|2821226|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CGAATACTTCATCTGACCTCCTGTAGAATCGG
>20.91|2821295|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTCGCTCTAGCCTCGGAACGATCAGAAATCTACTG
>20.92|2821367|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTCTTTGGCTTTCTGATGTGTCTCCTCGCGACAAAC
>20.93|2821440|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCCATAAGAAGGGATCTCTTAAATATAAAATTATT
>20.94|2821512|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AATTTCTTATTAGAGATTAAGGGGTAATTGCCCTC
>20.95|2821584|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCACAAACCTTTTTTACCGGAGTAACTTTTAGATCGA
>20.96|2821658|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TCTTTATAAGCATATCTTCTCATTATCTCTCGCCA
>20.97|2821730|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTCAAACAAATCGGCTAAATCAAAACTCCAGTTTT
>20.98|2821802|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TATTCCAATGCTCCCATTTGGGAGCCTAAAAAGAT
>20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CGAAATTCTGCAATTCCATCGGCAATAATTAAA
>20.100|2821944|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CGAAATTCTGCAATTCCATCGGCAATAATTAAAAA
>20.101|2822016|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACAATCGAAATTAAAACTAATCCGATAGCGATTA
>20.102|2822087|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TGGCAAAGGATAGGATAACTCTCTTAAACTCCGC
>20.103|2822158|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCTTCTGGTAGTGGAAATAATGACGACGGTGTGACT
>20.104|2822231|39|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTATGAAGTATCAGAAGATATTGCACGCAAAACAGTAAG
>20.105|2822307|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CAACTCCTGCTCAACCTACTAAAATAGAGAAAATA
>20.106|2822379|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATTTGACGGCACATCTTTTGCTGATCAGCTAGAAG
>20.107|2822451|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACTAAGTATTTTGCTGGTAAGCAAATAGATGAATT
>20.108|2822523|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCTGATAGTGCAGTATCGCACCCCTCGCCTTAATT
>20.109|2822595|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATAGGCGATACGGGTATTCCATCCGGTTTCACCTGAG
>20.110|2822669|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GAGGTACAGGTTGCGGTTTACTTAAGTCTCTAAC
>20.111|2822740|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGGATACTTACGAAGATAAATTACCTTGTTCAGC
>20.112|2822812|35|NC_010296|CRISPRCasFinder,CRT
TTGTAATTGAGCTTCGTTGTACAGCCAATTTAATC

CRISPR arrays and Neighbor proteins around NC_010296_20

CRISPR arrays

The CRISPR arrays of NC_010296_20

>merge|NC_010296|20|2814769-2822884|PILER-CR,CRISPRCasFinder,CRT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCAGAATTCGACACAATTATTGCTATAAAAAATGATAGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATGGATTTTACATGGGATGAAGAAAAATCAAAATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCATGAAGGATACCAGATAGAACGTAACGATGGGACGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAATGGCAAGTGGAGAGGGGTGTTTATGATTTAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGAGAGATTGCCTTGATCGGAATGTTACCTCATCAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAACTTAATCCTCTAAAAAATCATGAGAGTCATAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGGAGAATATCGGTATCTCTGAGGGTGCGTTGCGGGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTGGTGAATGTGAGACTGCAAGTGGATAGGGAGCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGCCTTAGCCAACTTCCGTAATTCGTTAATTCCTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCCCAATAGCCTTTCTTGGCTAATTTGAGGGCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAGAAATGTGTCGAATTGGGCAGTTTATTGACCTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACAACAATATCTTCAGAATTAGTCAAAGGATGATCCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTAATCACTTTTATTGCTGACTTTGCTGTACATCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCCTATGGATGGGCATCGGAGGGTATTAGCTTGGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCGATTAATCATCCTAAAGATATCGGCAGAACCGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTCTACTACTCCATCTACCCAATAAAAAACCCGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAGACTAGGAACATCAGCATAAGTTGAAAACAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCAAACACTAGCTTTTACAAAGCAACCAGCTCGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAGCATGGAAAAACTAAGCGAGTTAACATCAGAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAACCCTGATTCTAATGCAAGAGAATTGACTTCTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGGCATTCTCTATCGGCGCGTCTCCGATAGACTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCAGGATTCGGTCCTGTGTAGTGACATCTATAGTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAATTTAGTTTTGACTGCAATTAATACTATCTCATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACCTGAGAAAGCACGCTGGCGGGCGAGGAAATATAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTAAAATTACTAGAAGGGGGCGTGGTATGATTAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGAAATTTTACTCGAAAAGCGTCGATTACTACCGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAATGGTTTGCATAATCCTAATTGCTACATCTCCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGATGCCATTGGTGAGCCGTCTTTATCTGATGATGAAAGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTTATCCCTTAGCGAAAAAAAGCAGATTGCCTCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCAAAACAGCCATGGCATACTCGATGATGTCCAGGCTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTTTTTTAGCACCCAATCAAACCAACAACACGCAAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTATACTCCCTAAAGCAGCTAAATTGTTTCCCGCCGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTGCTAAGACTAATACTGCATATTATTTTGGAGATGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGGGATTGTTTTCTTTTGGGATCGAGTTCTCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGATAAATTGGCATCTCTTTTAAATCTTGCTACTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCATCAGGCGATTTCAAAACTACGCGAATTGGAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATCCACTGCCCGACCCTGGGGACAATCCATACTAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAATCTTTCGCGAAACAGCATCGCTAACTTAAATGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACAAGCCTACAAATCGAACACCTACCCCTGCCCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGCTTGATAGAATCGTGGTACAAAAAAGCAACCAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTTTTAATAATCAGATTAAGCCTAATTTAACCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGGATAAGGCTGAGACCCGCATAGCCGATCGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACGATAATTGCTGAATCCCAATCCTCACGAATTTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTAAATGTTATTAATTGGGCGTTAGAGAAAGCACAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGATTTCCCCAAAAATACGATCTTCTTTGTTTAGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTGATTGGAATTGATACTCAATTTCTCTTTCTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAATTTTCCCTAAAACAACATCTCGATCATGATTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGGGCTTAACGCGATCGGGTTCCTAACCGACTTTCAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAAGTTGCATTCTGAAAGTCTAAAATCTCATTGCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAAGGAATTTTAACAGGGGGATACATTTGTTACTAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTGATCAAGATTAATCGACCGGGGAATTAAATTAGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCAGACTAACTCCGAAGGGAGTCTTGGGGAAAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAGTTCCAATGGTACGAAACAGCCTGGGCAGACCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAACGATTTTAAGGATTCCGGGGATGCAGTCTCGCTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTCTAACTTAAACTCAAGAAAAATCAATAAACAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCCTCATCTTGAATTGATAGCAGCGACGCATCATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCCACAACGACGACGACCCCTTAACAGCATAAATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCGATTACTTCTAAAACTTGAGACGCTCTGCTAGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAGGCAAGTCTTAGCCAAAGTTCTTAAACTACTATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCGGAAAATAATCTTGATGTGACTCTTGATGCCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTTAAAGATTTAATAGGCATTGTTTTTACTCCTAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCATCGTAAATTCTGACTGCATAGCTATCTAATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGTAAAAATTATCTACATAAATCATCAAAGTTCCTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCAAAACTACAGCGACCCTACTGGTAACTTCCTGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGCTGAATGAACTTATATATTGTGATGCCTCTAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTAATACCTTGAAAGAGCTAGAGTAGTAATCTATAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGTAAGTCACCCCATCATCATTGTTCCCACTACCAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCCGTGAATATTTATACTTACATTCACAGACTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTTTTTAGGAATGATGCCTGCCGTGGCAATGTCTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTCTATAGGAGTATCTGGTAAATACCCTACTCCCTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCCCTATATCGCTTCTTTGAGCGGGGAGATTTAATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTAATTCAGGCAAAAACTTCGGTTTTTGTTCAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTAAATATTCTTAGTTTTAATCCTCAGGCAAACCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAGTTAATAGTGGCTAGAGGAGTAGGATTAAATTGGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTAAAAGCAGGTAGTTTTAACTACCTGCTTGATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGTGATCGACCTTTGCCTGCTTGCCAAGCTCTCGATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTTCTACCCGCAATAATAGCGCTTCGATCTCTTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTGCTGTGGACTATAAGGGTCGCAACGCTCGATCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTGACAGATTACAGTGGGCTGAAACCCACCGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCATTGGCAGATTTATTCAAATTAGCGATCGCATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTTTAGACATTTTTAGGTCTGTGCCAAGAATGCAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGTTAGTTTCAATTGAAGCATCAAGATAAATATCATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTAATATTAAATTATAGAGAAAGACGACCGCAACTAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTTTTTTTAGCGACCCTTCGGCTTTGCTCGGGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCATCCGTCTATCATTCACCTTTTTATAATACCATGAAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATGAGCCCATTAGTTGAGGGATTCACAAAAGTTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAAAAAGGAGGACAAGTTGATGGGATTTGTAAAACGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGAATACTTCATCTGACCTCCTGTAGAATCGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTCGCTCTAGCCTCGGAACGATCAGAAATCTACTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTCTTTGGCTTTCTGATGTGTCTCCTCGCGACAAACGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCCATAAGAAGGGATCTCTTAAATATAAAATTATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAATTTCTTATTAGAGATTAAGGGGTAATTGCCCTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCACAAACCTTTTTTACCGGAGTAACTTTTAGATCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCTTTATAAGCATATCTTCTCATTATCTCTCGCCAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTCAAACAAATCGGCTAAATCAAAACTCCAGTTTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTATTCCAATGCTCCCATTTGGGAGCCTAAAAAGATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGAAATTCTGCAATTCCATCGGCAATAATTAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGAAATTCTGCAATTCCATCGGCAATAATTAAAAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACAATCGAAATTAAAACTAATCCGATAGCGATTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGGCAAAGGATAGGATAACTCTCTTAAACTCCGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCTTCTGGTAGTGGAAATAATGACGACGGTGTGACTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTATGAAGTATCAGAAGATATTGCACGCAAAACAGTAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAACTCCTGCTCAACCTACTAAAATAGAGAAAATAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTTGACGGCACATCTTTTGCTGATCAGCTAGAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACTAAGTATTTTGCTGGTAAGCAAATAGATGAATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCTGATAGTGCAGTATCGCACCCCTCGCCTTAATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATAGGCGATACGGGTATTCCATCCGGTTTCACCTGAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGAGGTACAGGTTGCGGTTTACTTAAGTCTCTAACGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGGATACTTACGAAGATAAATTACCTTGTTCAGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGTAATTGAGCTTCGTTGTACAGCCAATTTAATCGTTCCAATTAATCTTAAACCCTATTGGGACTTAGGCAT

>NC_010296|20|1|2814769-2822811|PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCAGAATTCGACACAATTATTGCTATAAAAAATGATAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGGATTTTACATGGGATGAAGAAAAATCAAAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATGAAGGATACCAGATAGAACGTAACGATGGGACG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATGGCAAGTGGAGAGGGGTGTTTATGATTTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGAGATTGCCTTGATCGGAATGTTACCTCATCAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACTTAATCCTCTAAAAAATCATGAGAGTCATAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGAGAATATCGGTATCTCTGAGGGTGCGTTGCGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGGTGAATGTGAGACTGCAAGTGGATAGGGAGCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCCTTAGCCAACTTCCGTAATTCGTTAATTCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCCCAATAGCCTTTCTTGGCTAATTTGAGGGCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGAAATGTGTCGAATTGGGCAGTTTATTGACCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAACAATATCTTCAGAATTAGTCAAAGGATGATCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAATCACTTTTATTGCTGACTTTGCTGTACATCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTAATCATCCTAAAGATATCGGCAGAACCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTACTACTCCATCTACCCAATAAAAAACCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGACTAGGAACATCAGCATAAGTTGAAAACAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACCCTGATTCTAATGCAAGAGAATTGACTTCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCAGGATTCGGTCCTGTGTAGTGACATCTATAGTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATTTAGTTTTGACTGCAATTAATACTATCTCATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACCTGAGAAAGCACGCTGGCGGGCGAGGAAATATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTAAAATTACTAGAAGGGGGCGTGGTATGATTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTTTACTCGAAAAGCGTCGATTACTACCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATGGTTTGCATAATCCTAATTGCTACATCTCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCCATTGGTGAGCCGTCTTTATCTGATGATGAAAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTATCCCTTAGCGAAAAAAAGCAGATTGCCTCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAAACAGCCATGGCATACTCGATGATGTCCAGGCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTTTTTAGCACCCAATCAAACCAACAACACGCAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTATACTCCCTAAAGCAGCTAAATTGTTTCCCGCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGCTAAGACTAATACTGCATATTATTTTGGAGATG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGGATTGTTTTCTTTTGGGATCGAGTTCTCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGATAAATTGGCATCTCTTTTAAATCTTGCTACT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATCAGGCGATTTCAAAACTACGCGAATTGGAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCCACTGCCCGACCCTGGGGACAATCCATACTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATCTTTCGCGAAACAGCATCGCTAACTTAAATGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAAGCCTACAAATCGAACACCTACCCCTGCCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCTTGATAGAATCGTGGTACAAAAAAGCAACCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTTAATAATCAGATTAAGCCTAATTTAACCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGATAAGGCTGAGACCCGCATAGCCGATCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACGATAATTGCTGAATCCCAATCCTCACGAATTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAATGTTATTAATTGGGCGTTAGAGAAAGCACAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGATTTCCCCAAAAATACGATCTTCTTTGTTTAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGATTGGAATTGATACTCAATTTCTCTTTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATTTTCCCTAAAACAACATCTCGATCATGATTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGGCTTAACGCGATCGGGTTCCTAACCGACTTTCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGTTGCATTCTGAAAGTCTAAAATCTCATTGCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGGAATTTTAACAGGGGGATACATTTGTTACTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGATCAAGATTAATCGACCGGGGAATTAAATTAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCAGACTAACTCCGAAGGGAGTCTTGGGGAAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGTTCCAATGGTACGAAACAGCCTGGGCAGACC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACGATTTTAAGGATTCCGGGGATGCAGTCTCGCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTCTAACTTAAACTCAAGAAAAATCAATAAACA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCCTCATCTTGAATTGATAGCAGCGACGCATCATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCACAACGACGACGACCCCTTAACAGCATAAATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTACTTCTAAAACTTGAGACGCTCTGCTAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGGCAAGTCTTAGCCAAAGTTCTTAAACTACTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGGAAAATAATCTTGATGTGACTCTTGATGCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTAAAGATTTAATAGGCATTGTTTTTACTCCTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCATCGTAAATTCTGACTGCATAGCTATCTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTAAAAATTATCTACATAAATCATCAAAGTTCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAAACTACAGCGACCCTACTGGTAACTTCCTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGCTGAATGAACTTATATATTGTGATGCCTCTAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATACCTTGAAAGAGCTAGAGTAGTAATCTATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGTAAGTCACCCCATCATCATTGTTCCCACTACCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCGTGAATATTTATACTTACATTCACAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTTTTAGGAATGATGCCTGCCGTGGCAATGTCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTCTATAGGAGTATCTGGTAAATACCCTACTCCCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCCTATATCGCTTCTTTGAGCGGGGAGATTTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATTCAGGCAAAAACTTCGGTTTTTGTTCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAATATTCTTAGTTTTAATCCTCAGGCAAACCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGTTAATAGTGGCTAGAGGAGTAGGATTAAATTGGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTAAAAGCAGGTAGTTTTAACTACCTGCTTGATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTGATCGACCTTTGCCTGCTTGCCAAGCTCTCGATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTCTACCCGCAATAATAGCGCTTCGATCTCTTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGCTGTGGACTATAAGGGTCGCAACGCTCGATCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTGACAGATTACAGTGGGCTGAAACCCACCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCATTGGCAGATTTATTCAAATTAGCGATCGCATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTAGACATTTTTAGGTCTGTGCCAAGAATGCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGTTAGTTTCAATTGAAGCATCAAGATAAATATCATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATATTAAATTATAGAGAAAGACGACCGCAACTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTTTTTAGCGACCCTTCGGCTTTGCTCGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCATCCGTCTATCATTCACCTTTTTATAATACCATGAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGAGCCCATTAGTTGAGGGATTCACAAAAGTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAAAAGGAGGACAAGTTGATGGGATTTGTAAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAATACTTCATCTGACCTCCTGTAGAATCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCGCTCTAGCCTCGGAACGATCAGAAATCTACTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTTTGGCTTTCTGATGTGTCTCCTCGCGACAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCCATAAGAAGGGATCTCTTAAATATAAAATTATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATTTCTTATTAGAGATTAAGGGGTAATTGCCCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCACAAACCTTTTTTACCGGAGTAACTTTTAGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCTTTATAAGCATATCTTCTCATTATCTCTCGCCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCAAACAAATCGGCTAAATCAAAACTCCAGTTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TATTCCAATGCTCCCATTTGGGAGCCTAAAAAGAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTCTGCAATTCCATCGGCAATAATTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTCTGCAATTCCATCGGCAATAATTAAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAATCGAAATTAAAACTAATCCGATAGCGATTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGGCAAAGGATAGGATAACTCTCTTAAACTCCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCTTCTGGTAGTGGAAATAATGACGACGGTGTGACT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTATGAAGTATCAGAAGATATTGCACGCAAAACAGTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAACTCCTGCTCAACCTACTAAAATAGAGAAAATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTGACGGCACATCTTTTGCTGATCAGCTAGAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTAAGTATTTTGCTGGTAAGCAAATAGATGAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCTGATAGTGCAGTATCGCACCCCTCGCCTTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATAGGCGATACGGGTATTCCATCCGGTTTCACCTGAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGGTACAGGTTGCGGTTTACTTAAGTCTCTAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGATACTTACGAAGATAAATTACCTTGTTCAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC

>NC_010296|20|18|2814769-2822884|CRISPRCasFinder
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCAGAATTCGACACAATTATTGCTATAAAAAATGATAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGGATTTTACATGGGATGAAGAAAAATCAAAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATGAAGGATACCAGATAGAACGTAACGATGGGACG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATGGCAAGTGGAGAGGGGTGTTTATGATTTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGAGATTGCCTTGATCGGAATGTTACCTCATCAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACTTAATCCTCTAAAAAATCATGAGAGTCATAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGAGAATATCGGTATCTCTGAGGGTGCGTTGCGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGGTGAATGTGAGACTGCAAGTGGATAGGGAGCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCCTTAGCCAACTTCCGTAATTCGTTAATTCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCCCAATAGCCTTTCTTGGCTAATTTGAGGGCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGAAATGTGTCGAATTGGGCAGTTTATTGACCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAACAATATCTTCAGAATTAGTCAAAGGATGATCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAATCACTTTTATTGCTGACTTTGCTGTACATCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTAATCATCCTAAAGATATCGGCAGAACCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTACTACTCCATCTACCCAATAAAAAACCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGACTAGGAACATCAGCATAAGTTGAAAACAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACCCTGATTCTAATGCAAGAGAATTGACTTCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCAGGATTCGGTCCTGTGTAGTGACATCTATAGTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATTTAGTTTTGACTGCAATTAATACTATCTCATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACCTGAGAAAGCACGCTGGCGGGCGAGGAAATATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTAAAATTACTAGAAGGGGGCGTGGTATGATTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTTTACTCGAAAAGCGTCGATTACTACCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATGGTTTGCATAATCCTAATTGCTACATCTCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCCATTGGTGAGCCGTCTTTATCTGATGATGAAAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTATCCCTTAGCGAAAAAAAGCAGATTGCCTCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAAACAGCCATGGCATACTCGATGATGTCCAGGCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTTTTTAGCACCCAATCAAACCAACAACACGCAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTATACTCCCTAAAGCAGCTAAATTGTTTCCCGCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGCTAAGACTAATACTGCATATTATTTTGGAGATG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGGATTGTTTTCTTTTGGGATCGAGTTCTCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGATAAATTGGCATCTCTTTTAAATCTTGCTACT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATCAGGCGATTTCAAAACTACGCGAATTGGAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCCACTGCCCGACCCTGGGGACAATCCATACTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATCTTTCGCGAAACAGCATCGCTAACTTAAATGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAAGCCTACAAATCGAACACCTACCCCTGCCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCTTGATAGAATCGTGGTACAAAAAAGCAACCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTTAATAATCAGATTAAGCCTAATTTAACCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGATAAGGCTGAGACCCGCATAGCCGATCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACGATAATTGCTGAATCCCAATCCTCACGAATTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAATGTTATTAATTGGGCGTTAGAGAAAGCACAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGATTTCCCCAAAAATACGATCTTCTTTGTTTAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGATTGGAATTGATACTCAATTTCTCTTTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATTTTCCCTAAAACAACATCTCGATCATGATTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGGCTTAACGCGATCGGGTTCCTAACCGACTTTCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGTTGCATTCTGAAAGTCTAAAATCTCATTGCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGGAATTTTAACAGGGGGATACATTTGTTACTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGATCAAGATTAATCGACCGGGGAATTAAATTAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCAGACTAACTCCGAAGGGAGTCTTGGGGAAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGTTCCAATGGTACGAAACAGCCTGGGCAGACC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACGATTTTAAGGATTCCGGGGATGCAGTCTCGCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTCTAACTTAAACTCAAGAAAAATCAATAAACA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCCTCATCTTGAATTGATAGCAGCGACGCATCATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCACAACGACGACGACCCCTTAACAGCATAAATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTACTTCTAAAACTTGAGACGCTCTGCTAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGGCAAGTCTTAGCCAAAGTTCTTAAACTACTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGGAAAATAATCTTGATGTGACTCTTGATGCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTAAAGATTTAATAGGCATTGTTTTTACTCCTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCATCGTAAATTCTGACTGCATAGCTATCTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTAAAAATTATCTACATAAATCATCAAAGTTCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAAACTACAGCGACCCTACTGGTAACTTCCTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGCTGAATGAACTTATATATTGTGATGCCTCTAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATACCTTGAAAGAGCTAGAGTAGTAATCTATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGTAAGTCACCCCATCATCATTGTTCCCACTACCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCGTGAATATTTATACTTACATTCACAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTTTTAGGAATGATGCCTGCCGTGGCAATGTCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTCTATAGGAGTATCTGGTAAATACCCTACTCCCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCCTATATCGCTTCTTTGAGCGGGGAGATTTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATTCAGGCAAAAACTTCGGTTTTTGTTCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAATATTCTTAGTTTTAATCCTCAGGCAAACCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGTTAATAGTGGCTAGAGGAGTAGGATTAAATTGGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTAAAAGCAGGTAGTTTTAACTACCTGCTTGATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTGATCGACCTTTGCCTGCTTGCCAAGCTCTCGATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTCTACCCGCAATAATAGCGCTTCGATCTCTTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGCTGTGGACTATAAGGGTCGCAACGCTCGATCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTGACAGATTACAGTGGGCTGAAACCCACCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCATTGGCAGATTTATTCAAATTAGCGATCGCATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTAGACATTTTTAGGTCTGTGCCAAGAATGCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGTTAGTTTCAATTGAAGCATCAAGATAAATATCATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATATTAAATTATAGAGAAAGACGACCGCAACTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTTTTTAGCGACCCTTCGGCTTTGCTCGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCATCCGTCTATCATTCACCTTTTTATAATACCATGAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGAGCCCATTAGTTGAGGGATTCACAAAAGTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAAAAGGAGGACAAGTTGATGGGATTTGTAAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAATACTTCATCTGACCTCCTGTAGAATCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCGCTCTAGCCTCGGAACGATCAGAAATCTACTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTTTGGCTTTCTGATGTGTCTCCTCGCGACAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCCATAAGAAGGGATCTCTTAAATATAAAATTATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATTTCTTATTAGAGATTAAGGGGTAATTGCCCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCACAAACCTTTTTTACCGGAGTAACTTTTAGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCTTTATAAGCATATCTTCTCATTATCTCTCGCCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCAAACAAATCGGCTAAATCAAAACTCCAGTTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TATTCCAATGCTCCCATTTGGGAGCCTAAAAAGAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTCTGCAATTCCATCGGCAATAATTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTCTGCAATTCCATCGGCAATAATTAAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAATCGAAATTAAAACTAATCCGATAGCGATTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGGCAAAGGATAGGATAACTCTCTTAAACTCCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCTTCTGGTAGTGGAAATAATGACGACGGTGTGACT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTATGAAGTATCAGAAGATATTGCACGCAAAACAGTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAACTCCTGCTCAACCTACTAAAATAGAGAAAATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTGACGGCACATCTTTTGCTGATCAGCTAGAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTAAGTATTTTGCTGGTAAGCAAATAGATGAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCTGATAGTGCAGTATCGCACCCCTCGCCTTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATAGGCGATACGGGTATTCCATCCGGTTTCACCTGAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGGTACAGGTTGCGGTTTACTTAAGTCTCTAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGATACTTACGAAGATAAATTACCTTGTTCAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTAATTGAGCTTCGTTGTACAGCCAATTTAATC
GTTCCAATTAATCTTAAACCCTATTGGGACTTAGGCAT

>NC_010296|20|3|2814769-2822883|CRT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCAGAATTCGACACAATTATTGCTATAAAAAATGATAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGGATTTTACATGGGATGAAGAAAAATCAAAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATGAAGGATACCAGATAGAACGTAACGATGGGACG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATGGCAAGTGGAGAGGGGTGTTTATGATTTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGAGATTGCCTTGATCGGAATGTTACCTCATCAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACTTAATCCTCTAAAAAATCATGAGAGTCATAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGAGAATATCGGTATCTCTGAGGGTGCGTTGCGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGGTGAATGTGAGACTGCAAGTGGATAGGGAGCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCCTTAGCCAACTTCCGTAATTCGTTAATTCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCCCAATAGCCTTTCTTGGCTAATTTGAGGGCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGAAATGTGTCGAATTGGGCAGTTTATTGACCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAACAATATCTTCAGAATTAGTCAAAGGATGATCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAATCACTTTTATTGCTGACTTTGCTGTACATCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCTTTATAGGGAGGAGAGAAAAATAAAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCTATGGATGGGCATCGGAGGGTATTAGCTTGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTAATCATCCTAAAGATATCGGCAGAACCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTACTACTCCATCTACCCAATAAAAAACCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGACTAGGAACATCAGCATAAGTTGAAAACAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGCACTTAAGAAAGGAACCCAAGATTTAAGCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAACACTAGCTTTTACAAAGCAACCAGCTCGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGCATGGAAAAACTAAGCGAGTTAACATCAGAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACCCTGATTCTAATGCAAGAGAATTGACTTCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGGCATTCTCTATCGGCGCGTCTCCGATAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCAGGATTCGGTCCTGTGTAGTGACATCTATAGTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATTTAGTTTTGACTGCAATTAATACTATCTCATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACCTGAGAAAGCACGCTGGCGGGCGAGGAAATATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTAAAATTACTAGAAGGGGGCGTGGTATGATTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTTTACTCGAAAAGCGTCGATTACTACCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATGGTTTGCATAATCCTAATTGCTACATCTCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GATGCCATTGGTGAGCCGTCTTTATCTGATGATGAAAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTATCCCTTAGCGAAAAAAAGCAGATTGCCTCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAAACAGCCATGGCATACTCGATGATGTCCAGGCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTTTTTAGCACCCAATCAAACCAACAACACGCAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTATACTCCCTAAAGCAGCTAAATTGTTTCCCGCCG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGCTAAGACTAATACTGCATATTATTTTGGAGATG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGGATTGTTTTCTTTTGGGATCGAGTTCTCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGATAAATTGGCATCTCTTTTAAATCTTGCTACT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATCAGGCGATTTCAAAACTACGCGAATTGGAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCCACTGCCCGACCCTGGGGACAATCCATACTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATCTTTCGCGAAACAGCATCGCTAACTTAAATGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAAGCCTACAAATCGAACACCTACCCCTGCCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGCTTGATAGAATCGTGGTACAAAAAAGCAACCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTTAATAATCAGATTAAGCCTAATTTAACCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGATAAGGCTGAGACCCGCATAGCCGATCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACGATAATTGCTGAATCCCAATCCTCACGAATTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAATGTTATTAATTGGGCGTTAGAGAAAGCACAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGATTTCCCCAAAAATACGATCTTCTTTGTTTAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGATTGGAATTGATACTCAATTTCTCTTTCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAATTTTCCCTAAAACAACATCTCGATCATGATTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GGGCTTAACGCGATCGGGTTCCTAACCGACTTTCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGTTGCATTCTGAAAGTCTAAAATCTCATTGCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGGAATTTTAACAGGGGGATACATTTGTTACTAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGATCAAGATTAATCGACCGGGGAATTAAATTAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCAGACTAACTCCGAAGGGAGTCTTGGGGAAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGTTCCAATGGTACGAAACAGCCTGGGCAGACC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACGATTTTAAGGATTCCGGGGATGCAGTCTCGCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTCTAACTTAAACTCAAGAAAAATCAATAAACA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCCTCATCTTGAATTGATAGCAGCGACGCATCATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCCACAACGACGACGACCCCTTAACAGCATAAATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGATTACTTCTAAAACTTGAGACGCTCTGCTAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGGCAAGTCTTAGCCAAAGTTCTTAAACTACTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCGGAAAATAATCTTGATGTGACTCTTGATGCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTAAAGATTTAATAGGCATTGTTTTTACTCCTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCATCGTAAATTCTGACTGCATAGCTATCTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTAAAAATTATCTACATAAATCATCAAAGTTCCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCAAAACTACAGCGACCCTACTGGTAACTTCCTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGCTGAATGAACTTATATATTGTGATGCCTCTAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATACCTTGAAAGAGCTAGAGTAGTAATCTATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGTAAGTCACCCCATCATCATTGTTCCCACTACCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCGTGAATATTTATACTTACATTCACAGACTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTTTTTAGGAATGATGCCTGCCGTGGCAATGTCT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTCTATAGGAGTATCTGGTAAATACCCTACTCCCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCCCTATATCGCTTCTTTGAGCGGGGAGATTTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATTCAGGCAAAAACTTCGGTTTTTGTTCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAATATTCTTAGTTTTAATCCTCAGGCAAACCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGTTAATAGTGGCTAGAGGAGTAGGATTAAATTGGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTAAAAGCAGGTAGTTTTAACTACCTGCTTGATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTGATCGACCTTTGCCTGCTTGCCAAGCTCTCGATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTCTACCCGCAATAATAGCGCTTCGATCTCTTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGCTGTGGACTATAAGGGTCGCAACGCTCGATCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTGACAGATTACAGTGGGCTGAAACCCACCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCATTGGCAGATTTATTCAAATTAGCGATCGCATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTAGACATTTTTAGGTCTGTGCCAAGAATGCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGTTAGTTTCAATTGAAGCATCAAGATAAATATCATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAATATTAAATTATAGAGAAAGACGACCGCAACTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTTTTTAGCGACCCTTCGGCTTTGCTCGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCATCCGTCTATCATTCACCTTTTTATAATACCATGAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGAGCCCATTAGTTGAGGGATTCACAAAAGTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAAAAGGAGGACAAGTTGATGGGATTTGTAAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAATACTTCATCTGACCTCCTGTAGAATCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCGCTCTAGCCTCGGAACGATCAGAAATCTACTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCTTTGGCTTTCTGATGTGTCTCCTCGCGACAAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCCATAAGAAGGGATCTCTTAAATATAAAATTATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATTTCTTATTAGAGATTAAGGGGTAATTGCCCTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCACAAACCTTTTTTACCGGAGTAACTTTTAGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TCTTTATAAGCATATCTTCTCATTATCTCTCGCCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCAAACAAATCGGCTAAATCAAAACTCCAGTTTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TATTCCAATGCTCCCATTTGGGAGCCTAAAAAGAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTCTGCAATTCCATCGGCAATAATTAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGAAATTCTGCAATTCCATCGGCAATAATTAAAAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACAATCGAAATTAAAACTAATCCGATAGCGATTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGGCAAAGGATAGGATAACTCTCTTAAACTCCGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCTTCTGGTAGTGGAAATAATGACGACGGTGTGACT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTATGAAGTATCAGAAGATATTGCACGCAAAACAGTAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAACTCCTGCTCAACCTACTAAAATAGAGAAAATA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTGACGGCACATCTTTTGCTGATCAGCTAGAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTAAGTATTTTGCTGGTAAGCAAATAGATGAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCTGATAGTGCAGTATCGCACCCCTCGCCTTAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATAGGCGATACGGGTATTCCATCCGGTTTCACCTGAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGGTACAGGTTGCGGTTTACTTAAGTCTCTAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGGATACTTACGAAGATAAATTACCTTGTTCAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGTAATTGAGCTTCGTTGTACAGCCAATTTAATC
GTTCCAATTAATCTTAAACCCTATTGGGACTTAGGCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|223979
NC_010296.1|WP_172456657.1|2834968_2835115_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein	unknown	unknown	gnl|CDD|373239
NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase	unknown	unknown	gnl|CDD|369439
NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|237771
NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl|CDD|188306
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|274976
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|187768
NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|182528
NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein	unknown	unknown	gnl|CDD|377648
NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|273776
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT	unknown	unknown	gnl|CDD|226863

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	0	1323.2	34.3
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	2.2e-55	182.7	0.0
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	8.4e-102	335.1	0.0
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	5.3e-50	164.8	0.0
NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	1e-144	475.5	0.0
NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	4.5e-148	486.9	0.0
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.5e-33	107.2	0.2
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.5e-57	190.1	4.2

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	4.19936e-14
NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase	gnl|CDD|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	6.97733e-41
NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.89417e-26
NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl|CDD|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.0937e-39
NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase	gnl|CDD|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	1.94864e-81
NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	7.22438e-27
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.03189e-44
NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.51021e-16
NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl|CDD|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein	gnl|CDD|188306	TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA].	0.0021863
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.10684e-42
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	4.28469e-143
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.67317e-55
NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	8.78214e-75
NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein	gnl|CDD|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	0.000179215
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.91614e-37
NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT	gnl|CDD|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	7.4271e-08

Protein sequences

>NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2
MYFVVSYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVEGVVIFGRGSVSPALVIELLERHIPLSFVTATGKYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMGKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLDNSYTIEGTNLHERVHTVGAANREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAIETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYREED
>NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGKILHTAEADKAFTLSPLQMQSGGKTINSPQWRYERPIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKHPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLNRWNRYSAIPFDSIVLESIFPSFFDIQTKLADEAYKNQSFGCVGEIHYRLLGEVEPAKIKAINVLADFALYAGVGRKTTMGMGMTRRIAKEKR
>NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease
MTLISSKPLTLPEFLSLTDPEGDITYELVDGEAIAKMSPKFFHSRLTGALFLVLDRWNQGRGEVGIEWAIILSKNGRDWCPVPDLLYISLERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease
MTLISSKSLTLPEFFSLTAPDGDITYELVDGEAIPKMSPKFFHSRLTLALSSILDRWNQGRGEVGIEWAIILSKNDRDWCPVPDLLYISPERLGDIPLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRIWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDEPQNLWVQALARGHHDYSTKEIIKDTYQLKKDPKYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLRENGKDKELGGKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAILWWYRELANFQPNPMQEQVFQTMVENKHPAFILKAPTGVGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEIKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGRSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEWVDDIVYDVKEPTNLQQKLTSIALAEWNSNPSHRIIVSVETVKDAIAIYEKIKQKLNIKSSGQNEFLFLYHGRLSDIPKTSHYSRTNLYKRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFINTLSEAELEDYKTILKGLHARNFDPKAIMNCVSTKQKIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVPIDRLINNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKDMVIKVCAVQEGAIYDHELGFKDLPRVFIKCRSNGYQERLRYNPTEDRSVVINYTSALTQD
>NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKANPLPTLDFYTDGNLQIPVALVELLQGESINV
>NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA
>NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein
MSIKQLSLFENVPPEQDTKAVTTSEEISELEITILLSALTANAIAQTDSTLIFALADDPRAMAIAKTFDRPKLVRQLRLSQPQKESEFIKPTFQGNQVFYREREIGRIQLVYKSPSPGELQAKLTHESTIDRFLEFLQKKYQIVSLHESNYHVQIFIPQTQQSHNIEELWIEFITKVIFSIYGDFQYQLSGLMQTFITMLKSVTLAGRGFSTLEIPIITRDQAKVLAAFYLAIFEQVKDRQEKRETEIVQLIEKIKSEELNSKDLESTEKKLKSRQEMQAKEFNKYRDYFQKVLSKLLYEQRAIYHKIRTLDEQLGKTGLSKAQVSKLQKQKDKIESQIIFQEGSIEEKQRFLEESDGNPFEFIEKQKQTDLLKPIQVIAKSFNKTATEQINSTRGDIFTQCILEMYRLLENPKLETIPEPLLTINPKILAARTAGDDGKDFCYSCGVTLDAKTVRWRVARFMFERPSQRRQSSSSEDRPFICSSCSVLSFASPLKVTDDSIILRLKPIREKSGYDDRVRLHNLKEYLRGLTTGELDITAGKYIILNSQKDKTNNGDIASQKLGLKQYALAKIASKLPLEVLSDWEIDLYLQKSTPDKLERRQLILLKGIMEGYNQNIIIKDAKTQEQKNEHKINLKLGDAIRYVQQDMPYLAEFIVSGVPDYNLKFENKIWLESIRELYWKQINEDVRNQQRSKGVYSMSETTMSKRAKIYEDVAALTGLLYPFIEWAEFLIKKDKEMEEKRKQGKKEQDNLDEKTIDKIKKEVAREISKIIENVKDEHFFTYYASIGDQDRTKIKATLKRDRDTYFIYDQARKLIFEKLKISEDIEVKKDGIASLNLTLDDIKNAYTYFANDPLYTDKQGDKNWRDFTYRLKLSLYTRFPELVRKLSSKGDK
>NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase
MELTDSLKKLLSETALQLKGAAKRRFMAQTVLELGYGGQTLAAQELGWNRTTIRKGIKELKRGIICVDNHSAKGRKKAEEHLPFLLENIKSLVDSQSQTDPSFKSQRLYVRLSAAEVRKQLISKYGYSDEDLPSEETIRVKLNNLGYRLKRVAKVLPQKKFPETEAIFEELANINREADEDPTMLRLSLDAKARVNIGLFDRGGKNRITVETNDHDFNPKTTLTPYGIFIPEFDELFLYFTASTVTSDFIVDILEDFWESEKSRFEKIKTLIINQDNGPENNSRRTQFMKRIVEFSQKYQVNIRLAYYPPYHSKYNPIERTWAVLENPWNGSILDEIETALKFAQTMTWKGKHPIVKLITETYEKGVKLTKKAMEKIEEKIERLTESTNQDFPDLGQWFIDIYYDKT
>NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein
MNTISNFLASAIVGGWIMTMAVFAIQNIQPVSLKFLQFESIKVPIGVLLAFSLGIGFFMAAFIPAFLRKSKKSPRSRFPPPQPGLDEFDF
>NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein
MIGIVLKEGIKVEVSKKMEKWAAQELQYADLGDTRRKKRLISIVENLASQLSTSVRHSSANLAAVSATSDFGNSPYFQPSVVRMIASLGVFLGRKGDGEPSVKTIWLGLGRLHDISQTWKLSDQISSPIEPP
>NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MLENAKKITVIGGGIWGQTLANLARLNHLAVRVWSRHTGEDLGAIIADTEVIISAVSIKGVVPTIEKLQQLQLNSRIIIVTATKGLEPITTRTPFHLWNQAFPANPLVVLSGPNLAKEINQGLPAATVVASYLQKAAILLQKLLSGESFRVYLNSDPLGTELGGTLKNVMAIASGVCDGLQLGTNAKSALLTRALPEIVRVGTCLGGCQETFFGLSGLGDLLATCNSPLSRNYQVGYQLALGLSLPEILAKLEGTAEGINTTEVLMRIAQEKNLYVPITCQVDRLLRGEISPQVAVYELMRRDLKAEFD
>NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase
MTNYRNPAPTVDIIIELIDSPHRPIVLIERKNPPFGWAIPGGFVDYGESVETAAIREAYEEISLQVQLIEQFHVYSDPNRDPRQHTISIVFIATAKGQPIAADDAKKVGIFHLWEFPQPLCFDHDRILNDYRRYRDYKIRPTH
>NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease
MLITESLKMAVSTLGANKVRSGLTMLGIIIGNASVVAMIGIGQGAQTLANDQFANLGPNTIFVVPGSRQARNTTVNLPKTLVLADAQAIAEQVPTVAEVAPEINARFLISHRNRNMTALVTGSTPEYASVRNFTLEKGRFINNIDLARNKRVTVIGTEVAAQLFPTQNPLGQQLRIKNLSFEVIGILEAKGSFFGNNQDEMLIIPLSTMNSQLVGKTGPYGVELSWISLTARSGEEIRAAKFQIQNLLRLRHKIVAEDDFRVETAKQMIEIFATITQGLTLLLALIAGISLIVGGIGVMNIMLVSVSERTGEIGLRKAIGAREQDILLQFLIESTLVSIAGGALGILVGAGAIVLVSSFSPLAATVSATAVALSLSVSTGIGLFFGVFPAYRASKLEPIVALRSV
>NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MAITVLGKSNRPLFWIFGLMASGFLAVGVVSYRLLQTPPPGLELAKMTVPAQRETLAVEIKASGRVEPIQSVNISPKNPGRLVRLLVDQGMIVKKGQTLAVMDNLEVYARGMQSEAHLREALANLEQAKRSIPEDIRQLQARFYQAQASYKQLEARLAQAKERIPKDLDQLQAQVQAAQSRFRLAENRVKRNENLVREGAIAQDQFDAVLNEYLNAKANLDESIRRLEQADKTASPEVAGIEQEMIGAAAAIAEAKFALEQRQKTQETELARLESSVAAARADLEQIKIQYRDTVITAPFDGIVTQKYATEGSFVTPTTSASSTASATSTSIIALASGLEVIAKVPEVDVGLLQRGQPVRIVADAFPEEVFEGRVILVAPEAIIEDNVTSFEVRIGLVTGRDKLKSKMNVDVTFVGQQLDNALVVPTVAIVTREGKSGVLVPDAENKPSFQPVSIGLVLDDKTQILSGLEAGEKVFIDLPEGAEDTSKTNQK
>NC_010296.1|WP_172456657.1|2834968_2835115_+|hypothetical-protein
MSPNIQNRGRFDFPNTVIAIDQPKVNWLYTNVSRAAFVVSLANNSQAR
>NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein
MPKLQLIISLLVFFVAGSPLAFSQALLPYAIEPELEQMEQAGIEIAEDAIQLARFRRTDAALGRAKLAVQLAPHLYQTWFILGSLYLQDDQVQLGIEALNQSLSLAPADAHANIKFSLGSAYFQNQDYQSAIAQIEAGLQMKPDISPALFDLGNSYLKLEQYPAAIAAYEKAVSQDKNFWPAINNIGLVKYEQGDKEAALKDWRTALKIDPKQPEPQLAIAVAVYSQGKTEEGIKLAQAALTSDSRYVSLEFLEENLWGQRLLQDTEKMFNHPKMKDFIARLPQPTPEAEEEN
>NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT
MQNLRQVSLLTSGQEQVLTIPPELALSSTEVLLRKEGHRLIIEPISSGSLISLLTTLPDITDNFPDIDEGLLPLDDITF

Crispr_ID: NC_010296_21

• CRISPR_ID: NC_010296_21
• CRISPR_location: 2823032-2824595
• CRISPR_type: Unclear
• Repeat_type: I-D,II-B
• Spacer_info: 21 spacers
• Cas_protein_info: cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5

Consensus repeat of NC_010296_21

Consensus_repeat	Method
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRISPRCasFinder

spacers of NC_010296_21

>21.1|2823069|34|NC_010296|CRT
TCCTGCTTTGGTAAAATTACTGATGCCCATAAGC
>21.2|2823140|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder
CAGCCCGAATGGTACGAGACAGCCTGGGCAGACCAA
>21.3|2823213|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder
TGCTAATCATTCTTTTAAATCTAATTCAGTAAACTT
>21.4|2823286|37|NC_010296|CRT,PILER-CR,CRISPRCasFinder
GTGATTGAGGTGTAGGTAGTTCCCGCCCATCCAACTG
>21.5|2823360|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
ATTCTGATGGCCAGTTTACGGTTGAGGTAATGGGG
>21.6|2823432|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
ATGTAAAACGGGAATCCGCAAAGAGTGTTACCCGG
>21.7|2823504|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder
AAGGATCGTCGGGCGCGGGATTCGGGAAATGAAATT
>21.8|2823577|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
ATGGTTTTTACTCCTAAGTATTTGTTTTTACTGGC
>21.9|2823649|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
AAACTGTAACCCATATCGTTCCGTGATTCTACGGT
>21.10|2823721|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder
CCCAGATCGGATATTTAGTAAATTCGATTACCTCTT
>21.11|2823794|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
ACCAAGTATTTTGCTGGTAAAGAAACAGACGAATT
>21.12|2823866|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
GCAGAATCGGAAAAGACGATTAACAATTTTTCCGA
>21.13|2823938|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
TTTTTAATCGATTCTTTTTCATTAGCAAGTAATTC
>21.14|2824010|37|NC_010296|CRT,PILER-CR,CRISPRCasFinder
ATTTGCTTCTTATTGCCATAGTGACAAAACCGTATGG
>21.15|2824084|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder
GTAAGCACCTCTCGATACTTGCCACTGGACATATTT
>21.16|2824157|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
CAGTTGGACTGACTTATCGGCATCAGATTTTTAGC
>21.17|2824229|37|NC_010296|CRT,PILER-CR,CRISPRCasFinder
TTTGAAACTGGCAATAGCGTCGGTGTAGGAGCGGCGG
>21.18|2824303|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder
CCCTTCGAGGTAACGCCTTTTAAAGCCAATCCCAAC
>21.19|2824376|40|NC_010296|CRT,PILER-CR,CRISPRCasFinder
AGTTAATCGATGAATAGCGATCACCCTCTTGACTGATCGA
>21.20|2824453|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder
CGCCTACTAAATTCCCCTCATCTTGAATTGATAGC
>21.21|2824525|34|NC_010296|CRT,CRISPRCasFinder
TTCTTTTGATGATGATGCTAACCGGGAAGCAATC

CRISPR arrays and Neighbor proteins around NC_010296_21

CRISPR arrays

The CRISPR arrays of NC_010296_21

>merge|NC_010296|21|2823032-2824595|CRT,PILER-CR,CRISPRCasFinder
TGTTTTTTGTCTAAGTCCCACTATTAGGGATTGAAACTCCTGCTTTGGTAAAATTACTGATGCCCATAAGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAGCCCGAATGGTACGAGACAGCCTGGGCAGACCAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGCTAATCATTCTTTTAAATCTAATTCAGTAAACTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTGATTGAGGTGTAGGTAGTTCCCGCCCATCCAACTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTCTGATGGCCAGTTTACGGTTGAGGTAATGGGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATGTAAAACGGGAATCCGCAAAGAGTGTTACCCGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAGGATCGTCGGGCGCGGGATTCGGGAAATGAAATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATGGTTTTTACTCCTAAGTATTTGTTTTTACTGGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAACTGTAACCCATATCGTTCCGTGATTCTACGGTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCAGATCGGATATTTAGTAAATTCGATTACCTCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACCAAGTATTTTGCTGGTAAAGAAACAGACGAATTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCAGAATCGGAAAAGACGATTAACAATTTTTCCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTTTAATCGATTCTTTTTCATTAGCAAGTAATTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTTGCTTCTTATTGCCATAGTGACAAAACCGTATGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTAAGCACCTCTCGATACTTGCCACTGGACATATTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAGTTGGACTGACTTATCGGCATCAGATTTTTAGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTGAAACTGGCAATAGCGTCGGTGTAGGAGCGGCGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCTTCGAGGTAACGCCTTTTAAAGCCAATCCCAACGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAGTTAATCGATGAATAGCGATCACCCTCTTGACTGATCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGCCTACTAAATTCCCCTCATCTTGAATTGATAGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCTTTTGATGATGATGCTAACCGGGAAGCAATCGTTCCAATTAATCTTAAACCCTATTAGGGACTTCCAA

>NC_010296|21|4|2823032-2824595|CRT
TGTTTTTTGTCTAAGTCCCACTATTAGGGATTGAAAC	TCCTGCTTTGGTAAAATTACTGATGCCCATAAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGCCCGAATGGTACGAGACAGCCTGGGCAGACCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGCTAATCATTCTTTTAAATCTAATTCAGTAAACTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGATTGAGGTGTAGGTAGTTCCCGCCCATCCAACTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTCTGATGGCCAGTTTACGGTTGAGGTAATGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGTAAAACGGGAATCCGCAAAGAGTGTTACCCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGGATCGTCGGGCGCGGGATTCGGGAAATGAAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGGTTTTTACTCCTAAGTATTTGTTTTTACTGGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAACTGTAACCCATATCGTTCCGTGATTCTACGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCAGATCGGATATTTAGTAAATTCGATTACCTCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACCAAGTATTTTGCTGGTAAAGAAACAGACGAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAGAATCGGAAAAGACGATTAACAATTTTTCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTAATCGATTCTTTTTCATTAGCAAGTAATTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTGCTTCTTATTGCCATAGTGACAAAACCGTATGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAAGCACCTCTCGATACTTGCCACTGGACATATTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGTTGGACTGACTTATCGGCATCAGATTTTTAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGAAACTGGCAATAGCGTCGGTGTAGGAGCGGCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTTCGAGGTAACGCCTTTTAAAGCCAATCCCAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGTTAATCGATGAATAGCGATCACCCTCTTGACTGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGCCTACTAAATTCCCCTCATCTTGAATTGATAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCTTTTGATGATGATGCTAACCGGGAAGCAATC
GTTCCAATTAATCTTAAACCCTATTAGGGACTTCCAA

>NC_010296|21|2|2823103-2824524|PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGCCCGAATGGTACGAGACAGCCTGGGCAGACCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGCTAATCATTCTTTTAAATCTAATTCAGTAAACTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGATTGAGGTGTAGGTAGTTCCCGCCCATCCAACTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTCTGATGGCCAGTTTACGGTTGAGGTAATGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGTAAAACGGGAATCCGCAAAGAGTGTTACCCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGGATCGTCGGGCGCGGGATTCGGGAAATGAAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGGTTTTTACTCCTAAGTATTTGTTTTTACTGGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAACTGTAACCCATATCGTTCCGTGATTCTACGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCAGATCGGATATTTAGTAAATTCGATTACCTCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACCAAGTATTTTGCTGGTAAAGAAACAGACGAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAGAATCGGAAAAGACGATTAACAATTTTTCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTAATCGATTCTTTTTCATTAGCAAGTAATTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTGCTTCTTATTGCCATAGTGACAAAACCGTATGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAAGCACCTCTCGATACTTGCCACTGGACATATTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGTTGGACTGACTTATCGGCATCAGATTTTTAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGAAACTGGCAATAGCGTCGGTGTAGGAGCGGCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTTCGAGGTAACGCCTTTTAAAGCCAATCCCAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGTTAATCGATGAATAGCGATCACCCTCTTGACTGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGCCTACTAAATTCCCCTCATCTTGAATTGATAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC

>NC_010296|21|19|2823103-2824595|CRISPRCasFinder
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGCCCGAATGGTACGAGACAGCCTGGGCAGACCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGCTAATCATTCTTTTAAATCTAATTCAGTAAACTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTGATTGAGGTGTAGGTAGTTCCCGCCCATCCAACTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTCTGATGGCCAGTTTACGGTTGAGGTAATGGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGTAAAACGGGAATCCGCAAAGAGTGTTACCCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAGGATCGTCGGGCGCGGGATTCGGGAAATGAAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATGGTTTTTACTCCTAAGTATTTGTTTTTACTGGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAACTGTAACCCATATCGTTCCGTGATTCTACGGT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCAGATCGGATATTTAGTAAATTCGATTACCTCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACCAAGTATTTTGCTGGTAAAGAAACAGACGAATT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAGAATCGGAAAAGACGATTAACAATTTTTCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTAATCGATTCTTTTTCATTAGCAAGTAATTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTGCTTCTTATTGCCATAGTGACAAAACCGTATGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAAGCACCTCTCGATACTTGCCACTGGACATATTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGTTGGACTGACTTATCGGCATCAGATTTTTAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGAAACTGGCAATAGCGTCGGTGTAGGAGCGGCGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTTCGAGGTAACGCCTTTTAAAGCCAATCCCAAC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGTTAATCGATGAATAGCGATCACCCTCTTGACTGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CGCCTACTAAATTCCCCTCATCTTGAATTGATAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCTTTTGATGATGATGCTAACCGGGAAGCAATC
GTTCCAATTAATCTTAAACCCTATTAGGGACTTCCAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|223979
NC_010296.1|WP_172456657.1|2834968_2835115_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein	unknown	unknown	gnl|CDD|373239
NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase	unknown	unknown	gnl|CDD|369439
NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|237771
NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl|CDD|188306
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|274976
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|187768
NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|182528
NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein	unknown	unknown	gnl|CDD|377648
NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|273776
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT	unknown	unknown	gnl|CDD|226863

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	0	1323.2	34.3
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	2.2e-55	182.7	0.0
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	8.4e-102	335.1	0.0
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	5.3e-50	164.8	0.0
NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	1e-144	475.5	0.0
NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	4.5e-148	486.9	0.0
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.5e-33	107.2	0.2
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.5e-57	190.1	4.2

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	4.19936e-14
NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase	gnl|CDD|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	6.97733e-41
NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.89417e-26
NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl|CDD|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.0937e-39
NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase	gnl|CDD|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	1.94864e-81
NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	7.22438e-27
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.03189e-44
NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.51021e-16
NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl|CDD|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein	gnl|CDD|188306	TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA].	0.0021863
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.10684e-42
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	4.28469e-143
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.67317e-55
NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	8.78214e-75
NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein	gnl|CDD|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	0.000179215
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.91614e-37
NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT	gnl|CDD|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	7.4271e-08

Protein sequences

>NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2
MYFVVSYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVEGVVIFGRGSVSPALVIELLERHIPLSFVTATGKYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMGKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLDNSYTIEGTNLHERVHTVGAANREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAIETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYREED
>NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGKILHTAEADKAFTLSPLQMQSGGKTINSPQWRYERPIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKHPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLNRWNRYSAIPFDSIVLESIFPSFFDIQTKLADEAYKNQSFGCVGEIHYRLLGEVEPAKIKAINVLADFALYAGVGRKTTMGMGMTRRIAKEKR
>NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease
MTLISSKPLTLPEFLSLTDPEGDITYELVDGEAIAKMSPKFFHSRLTGALFLVLDRWNQGRGEVGIEWAIILSKNGRDWCPVPDLLYISLERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease
MTLISSKSLTLPEFFSLTAPDGDITYELVDGEAIPKMSPKFFHSRLTLALSSILDRWNQGRGEVGIEWAIILSKNDRDWCPVPDLLYISPERLGDIPLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRIWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDEPQNLWVQALARGHHDYSTKEIIKDTYQLKKDPKYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLRENGKDKELGGKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAILWWYRELANFQPNPMQEQVFQTMVENKHPAFILKAPTGVGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEIKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGRSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEWVDDIVYDVKEPTNLQQKLTSIALAEWNSNPSHRIIVSVETVKDAIAIYEKIKQKLNIKSSGQNEFLFLYHGRLSDIPKTSHYSRTNLYKRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFINTLSEAELEDYKTILKGLHARNFDPKAIMNCVSTKQKIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVPIDRLINNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKDMVIKVCAVQEGAIYDHELGFKDLPRVFIKCRSNGYQERLRYNPTEDRSVVINYTSALTQD
>NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKANPLPTLDFYTDGNLQIPVALVELLQGESINV
>NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA
>NC_010296.1|WP_012266051.1|2802746_2805431_+|hypothetical-protein
MSIKQLSLFENVPPEQDTKAVTTSEEISELEITILLSALTANAIAQTDSTLIFALADDPRAMAIAKTFDRPKLVRQLRLSQPQKESEFIKPTFQGNQVFYREREIGRIQLVYKSPSPGELQAKLTHESTIDRFLEFLQKKYQIVSLHESNYHVQIFIPQTQQSHNIEELWIEFITKVIFSIYGDFQYQLSGLMQTFITMLKSVTLAGRGFSTLEIPIITRDQAKVLAAFYLAIFEQVKDRQEKRETEIVQLIEKIKSEELNSKDLESTEKKLKSRQEMQAKEFNKYRDYFQKVLSKLLYEQRAIYHKIRTLDEQLGKTGLSKAQVSKLQKQKDKIESQIIFQEGSIEEKQRFLEESDGNPFEFIEKQKQTDLLKPIQVIAKSFNKTATEQINSTRGDIFTQCILEMYRLLENPKLETIPEPLLTINPKILAARTAGDDGKDFCYSCGVTLDAKTVRWRVARFMFERPSQRRQSSSSEDRPFICSSCSVLSFASPLKVTDDSIILRLKPIREKSGYDDRVRLHNLKEYLRGLTTGELDITAGKYIILNSQKDKTNNGDIASQKLGLKQYALAKIASKLPLEVLSDWEIDLYLQKSTPDKLERRQLILLKGIMEGYNQNIIIKDAKTQEQKNEHKINLKLGDAIRYVQQDMPYLAEFIVSGVPDYNLKFENKIWLESIRELYWKQINEDVRNQQRSKGVYSMSETTMSKRAKIYEDVAALTGLLYPFIEWAEFLIKKDKEMEEKRKQGKKEQDNLDEKTIDKIKKEVAREISKIIENVKDEHFFTYYASIGDQDRTKIKATLKRDRDTYFIYDQARKLIFEKLKISEDIEVKKDGIASLNLTLDDIKNAYTYFANDPLYTDKQGDKNWRDFTYRLKLSLYTRFPELVRKLSSKGDK
>NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase
MELTDSLKKLLSETALQLKGAAKRRFMAQTVLELGYGGQTLAAQELGWNRTTIRKGIKELKRGIICVDNHSAKGRKKAEEHLPFLLENIKSLVDSQSQTDPSFKSQRLYVRLSAAEVRKQLISKYGYSDEDLPSEETIRVKLNNLGYRLKRVAKVLPQKKFPETEAIFEELANINREADEDPTMLRLSLDAKARVNIGLFDRGGKNRITVETNDHDFNPKTTLTPYGIFIPEFDELFLYFTASTVTSDFIVDILEDFWESEKSRFEKIKTLIINQDNGPENNSRRTQFMKRIVEFSQKYQVNIRLAYYPPYHSKYNPIERTWAVLENPWNGSILDEIETALKFAQTMTWKGKHPIVKLITETYEKGVKLTKKAMEKIEEKIERLTESTNQDFPDLGQWFIDIYYDKT
>NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein
MNTISNFLASAIVGGWIMTMAVFAIQNIQPVSLKFLQFESIKVPIGVLLAFSLGIGFFMAAFIPAFLRKSKKSPRSRFPPPQPGLDEFDF
>NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein
MIGIVLKEGIKVEVSKKMEKWAAQELQYADLGDTRRKKRLISIVENLASQLSTSVRHSSANLAAVSATSDFGNSPYFQPSVVRMIASLGVFLGRKGDGEPSVKTIWLGLGRLHDISQTWKLSDQISSPIEPP
>NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MLENAKKITVIGGGIWGQTLANLARLNHLAVRVWSRHTGEDLGAIIADTEVIISAVSIKGVVPTIEKLQQLQLNSRIIIVTATKGLEPITTRTPFHLWNQAFPANPLVVLSGPNLAKEINQGLPAATVVASYLQKAAILLQKLLSGESFRVYLNSDPLGTELGGTLKNVMAIASGVCDGLQLGTNAKSALLTRALPEIVRVGTCLGGCQETFFGLSGLGDLLATCNSPLSRNYQVGYQLALGLSLPEILAKLEGTAEGINTTEVLMRIAQEKNLYVPITCQVDRLLRGEISPQVAVYELMRRDLKAEFD
>NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase
MTNYRNPAPTVDIIIELIDSPHRPIVLIERKNPPFGWAIPGGFVDYGESVETAAIREAYEEISLQVQLIEQFHVYSDPNRDPRQHTISIVFIATAKGQPIAADDAKKVGIFHLWEFPQPLCFDHDRILNDYRRYRDYKIRPTH
>NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease
MLITESLKMAVSTLGANKVRSGLTMLGIIIGNASVVAMIGIGQGAQTLANDQFANLGPNTIFVVPGSRQARNTTVNLPKTLVLADAQAIAEQVPTVAEVAPEINARFLISHRNRNMTALVTGSTPEYASVRNFTLEKGRFINNIDLARNKRVTVIGTEVAAQLFPTQNPLGQQLRIKNLSFEVIGILEAKGSFFGNNQDEMLIIPLSTMNSQLVGKTGPYGVELSWISLTARSGEEIRAAKFQIQNLLRLRHKIVAEDDFRVETAKQMIEIFATITQGLTLLLALIAGISLIVGGIGVMNIMLVSVSERTGEIGLRKAIGAREQDILLQFLIESTLVSIAGGALGILVGAGAIVLVSSFSPLAATVSATAVALSLSVSTGIGLFFGVFPAYRASKLEPIVALRSV
>NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MAITVLGKSNRPLFWIFGLMASGFLAVGVVSYRLLQTPPPGLELAKMTVPAQRETLAVEIKASGRVEPIQSVNISPKNPGRLVRLLVDQGMIVKKGQTLAVMDNLEVYARGMQSEAHLREALANLEQAKRSIPEDIRQLQARFYQAQASYKQLEARLAQAKERIPKDLDQLQAQVQAAQSRFRLAENRVKRNENLVREGAIAQDQFDAVLNEYLNAKANLDESIRRLEQADKTASPEVAGIEQEMIGAAAAIAEAKFALEQRQKTQETELARLESSVAAARADLEQIKIQYRDTVITAPFDGIVTQKYATEGSFVTPTTSASSTASATSTSIIALASGLEVIAKVPEVDVGLLQRGQPVRIVADAFPEEVFEGRVILVAPEAIIEDNVTSFEVRIGLVTGRDKLKSKMNVDVTFVGQQLDNALVVPTVAIVTREGKSGVLVPDAENKPSFQPVSIGLVLDDKTQILSGLEAGEKVFIDLPEGAEDTSKTNQK
>NC_010296.1|WP_172456657.1|2834968_2835115_+|hypothetical-protein
MSPNIQNRGRFDFPNTVIAIDQPKVNWLYTNVSRAAFVVSLANNSQAR
>NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein
MPKLQLIISLLVFFVAGSPLAFSQALLPYAIEPELEQMEQAGIEIAEDAIQLARFRRTDAALGRAKLAVQLAPHLYQTWFILGSLYLQDDQVQLGIEALNQSLSLAPADAHANIKFSLGSAYFQNQDYQSAIAQIEAGLQMKPDISPALFDLGNSYLKLEQYPAAIAAYEKAVSQDKNFWPAINNIGLVKYEQGDKEAALKDWRTALKIDPKQPEPQLAIAVAVYSQGKTEEGIKLAQAALTSDSRYVSLEFLEENLWGQRLLQDTEKMFNHPKMKDFIARLPQPTPEAEEEN
>NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT
MQNLRQVSLLTSGQEQVLTIPPELALSSTEVLLRKEGHRLIIEPISSGSLISLLTTLPDITDNFPDIDEGLLPLDDITF

Crispr_ID: NC_010296_22

• CRISPR_ID: NC_010296_22
• CRISPR_location: 2826228-2829166
• CRISPR_type: Unclear
• Repeat_type: I-D,II-B
• Spacer_info: 40 spacers
• Cas_protein_info: cas2,cas1,cas4,cas6,cas3,cas5,cas7

Consensus repeat of NC_010296_22

Consensus_repeat	Method
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRISPRCasFinder
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CRT

spacers of NC_010296_22

>22.1|2826265|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTTAAGACAGTGCCTTTGAGCGATAAGGGCGATTATC
>22.2|2826339|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
>22.3|2826413|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
>22.4|2826487|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AGGCGGGCCGGGAGACAGCCTTTTTCTTTGATCAG
>22.5|2826559|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTTGTGAGTCCCTGTGCAACAATCCGAAAATTCCC
>22.6|2826631|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACTACACACAACCGAATTGTAAGTGATAATTTATC
>22.7|2826703|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTGACAGAACGGGTTGAATGGGAAGGTAAGCCTA
>22.8|2826774|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCACAAAGTTGTCACTTTGTCTCGTCAGGAAAGC
>22.9|2826845|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAATTTTGCATTTGCTGAAAAAATCTTTGACCTTC
>22.10|2826917|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCTGGTGTACCTAGCCTACAATCTTAGTTTAAATC
>22.11|2826989|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CATTTACTTTTTAATGAAGGCACGCCATAATTTAA
>22.12|2827061|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TGTGCAAAGCTACGCCCATCGATTTCCCGTCTGGG
>22.13|2827133|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TGGGAGATTGGAATCACAGCCGAAAAATAGGATCGA
>22.14|2827206|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCGGCTTTTTTAGCTCCCTCAGTAATGATTATTGG
>22.15|2827278|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCCAACTATACCGATGATTTCGGTACTGAATACAA
>22.16|2827350|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCCGTATTTGCGGGTGTTGGAGCTATACTCAAAAAGA
>22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACTATGGTATAATGAAAGTACAAACAAAGAAAAG
>22.18|2827495|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTGATTATTTCCGTGGCTATTTTTAAGCATTGCTCAT
>22.19|2827569|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CATAAAAGTGCCTCTTTAATTCCGGCTTCTAGAG
>22.20|2827640|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATTTTACTTGCAACTTATTCTCAATAAAAAATCA
>22.21|2827711|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CAGAGGCTTGAGCTAATTCAAATTTTTCACGCGCTA
>22.22|2827784|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTTCCTTCCCTCTCGGCTTTTGCCCGGATAATCGGA
>22.23|2827857|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TAAGTTCTGTAGAAAACGACTTAGATATACAGCTT
>22.24|2827929|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ACTGTATTCCTTTGGTGCGAGAGTATCGGGGTATC
>22.25|2828001|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTTCCTTTATTTTTGGCTGTTTCTCCTAAGCTTGA
>22.26|2828073|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTCGGAGTATCCTGTAGATATGTACTTTTATAAGG
>22.27|2828145|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TTTTTTGTATTCCGTGGAAGAATACGAAGAAATGAA
>22.28|2828218|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
ATCGACATAAAACACATACTAACAGTCCTAACCAG
>22.29|2828290|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AAAGCTAGGCTAATAGCGGCACTGATTAAAATTTC
>22.30|2828362|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GTAACTGCCTTATTTTCTGGCAGTTTTTTCAAAAAT
>22.31|2828435|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
TACTCGTCGGGAACCCTATCACCCGCTTTCGGTTCC
>22.32|2828508|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTGCCATTGTCCGCAATGGTAGCCCTAAGCTATCTGA
>22.33|2828582|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GCCAATAAATCCAATTCTCGCCGGCGCGTCTTGACA
>22.34|2828655|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AACAGAAATATTGCTGATTTCGCCGCTATGCCACGC
>22.35|2828728|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CCCTCGGAACAGCAGTTGCGGCGGTGGCTGAATAA
>22.36|2828800|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT
AATTACCACCGGCTTAATCCACCCAGACTGCCGA
>22.37|2828871|38|NC_010296|PILER-CR,CRISPRCasFinder,CRT
GAGGGAAAATCTGCCCTTGTCGCAGATGCCCAAATATC
>22.38|2828946|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CATGATTTTCTAAATATTCAGCTATCTCTAGCCGA
>22.39|2829018|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CATTTACTTTTTAATGAAGCCACGCCATAATTTAA
>22.40|2829090|40|NC_010296|PILER-CR,CRISPRCasFinder,CRT
CTCACTTTAGGCTAGTGTTTGCCCTCTCGTGAAAAAGCAA

CRISPR arrays and Neighbor proteins around NC_010296_22

CRISPR arrays

The CRISPR arrays of NC_010296_22

>merge|NC_010296|22|2826228-2829166|PILER-CR,CRISPRCasFinder,CRT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTTAAGACAGTGCCTTTGAGCGATAAGGGCGATTATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAGGCGGGCCGGGAGACAGCCTTTTTCTTTGATCAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTGTGAGTCCCTGTGCAACAATCCGAAAATTCCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACTACACACAACCGAATTGTAAGTGATAATTTATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTGACAGAACGGGTTGAATGGGAAGGTAAGCCTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCACAAAGTTGTCACTTTGTCTCGTCAGGAAAGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAATTTTGCATTTGCTGAAAAAATCTTTGACCTTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCTGGTGTACCTAGCCTACAATCTTAGTTTAAATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCATTTACTTTTTAATGAAGGCACGCCATAATTTAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGTGCAAAGCTACGCCCATCGATTTCCCGTCTGGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTGGGAGATTGGAATCACAGCCGAAAAATAGGATCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCGGCTTTTTTAGCTCCCTCAGTAATGATTATTGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCAACTATACCGATGATTTCGGTACTGAATACAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCGTATTTGCGGGTGTTGGAGCTATACTCAAAAAGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACTATGGTATAATGAAAGTACAAACAAAGAAAAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGATTATTTCCGTGGCTATTTTTAAGCATTGCTCATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCATAAAAGTGCCTCTTTAATTCCGGCTTCTAGAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTTTACTTGCAACTTATTCTCAATAAAAAATCAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCAGAGGCTTGAGCTAATTCAAATTTTTCACGCGCTAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTCCTTCCCTCTCGGCTTTTGCCCGGATAATCGGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTAAGTTCTGTAGAAAACGACTTAGATATACAGCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACACTGTATTCCTTTGGTGCGAGAGTATCGGGGTATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTCCTTTATTTTTGGCTGTTTCTCCTAAGCTTGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTCGGAGTATCCTGTAGATATGTACTTTTATAAGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTTTTTGTATTCCGTGGAAGAATACGAAGAAATGAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATCGACATAAAACACATACTAACAGTCCTAACCAGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAAAGCTAGGCTAATAGCGGCACTGATTAAAATTTCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGTAACTGCCTTATTTTCTGGCAGTTTTTTCAAAAATGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTACTCGTCGGGAACCCTATCACCCGCTTTCGGTTCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTGCCATTGTCCGCAATGGTAGCCCTAAGCTATCTGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGCCAATAAATCCAATTCTCGCCGGCGCGTCTTGACAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAACAGAAATATTGCTGATTTCGCCGCTATGCCACGCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCCCTCGGAACAGCAGTTGCGGCGGTGGCTGAATAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAATTACCACCGGCTTAATCCACCCAGACTGCCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACGAGGGAAAATCTGCCCTTGTCGCAGATGCCCAAATATCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCATGATTTTCTAAATATTCAGCTATCTCTAGCCGAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCATTTACTTTTTAATGAAGCCACGCCATAATTTAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCTCACTTTAGGCTAGTGTTTGCCCTCTCGTGAAAAAGCAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

>NC_010296|22|3|2826228-2829166|PILER-CR
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTAAGACAGTGCCTTTGAGCGATAAGGGCGATTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGGCGGGCCGGGAGACAGCCTTTTTCTTTGATCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGTGAGTCCCTGTGCAACAATCCGAAAATTCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTACACACAACCGAATTGTAAGTGATAATTTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGACAGAACGGGTTGAATGGGAAGGTAAGCCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCACAAAGTTGTCACTTTGTCTCGTCAGGAAAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATTTTGCATTTGCTGAAAAAATCTTTGACCTTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCTGGTGTACCTAGCCTACAATCTTAGTTTAAATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATTTACTTTTTAATGAAGGCACGCCATAATTTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGTGCAAAGCTACGCCCATCGATTTCCCGTCTGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGGGAGATTGGAATCACAGCCGAAAAATAGGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCGGCTTTTTTAGCTCCCTCAGTAATGATTATTGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCAACTATACCGATGATTTCGGTACTGAATACAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCGTATTTGCGGGTGTTGGAGCTATACTCAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTATGGTATAATGAAAGTACAAACAAAGAAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGATTATTTCCGTGGCTATTTTTAAGCATTGCTCAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATAAAAGTGCCTCTTTAATTCCGGCTTCTAGAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTACTTGCAACTTATTCTCAATAAAAAATCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGAGGCTTGAGCTAATTCAAATTTTTCACGCGCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTCCTTCCCTCTCGGCTTTTGCCCGGATAATCGGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAGTTCTGTAGAAAACGACTTAGATATACAGCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTGTATTCCTTTGGTGCGAGAGTATCGGGGTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTCCTTTATTTTTGGCTGTTTCTCCTAAGCTTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGGAGTATCCTGTAGATATGTACTTTTATAAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTTGTATTCCGTGGAAGAATACGAAGAAATGAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCGACATAAAACACATACTAACAGTCCTAACCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGCTAGGCTAATAGCGGCACTGATTAAAATTTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAACTGCCTTATTTTCTGGCAGTTTTTTCAAAAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TACTCGTCGGGAACCCTATCACCCGCTTTCGGTTCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGCCATTGTCCGCAATGGTAGCCCTAAGCTATCTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCCAATAAATCCAATTCTCGCCGGCGCGTCTTGACA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACAGAAATATTGCTGATTTCGCCGCTATGCCACGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTCGGAACAGCAGTTGCGGCGGTGGCTGAATAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATTACCACCGGCTTAATCCACCCAGACTGCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGGGAAAATCTGCCCTTGTCGCAGATGCCCAAATATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATGATTTTCTAAATATTCAGCTATCTCTAGCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATTTACTTTTTAATGAAGCCACGCCATAATTTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCACTTTAGGCTAGTGTTTGCCCTCTCGTGAAAAAGCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

>NC_010296|22|20|2826228-2829166|CRISPRCasFinder
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTAAGACAGTGCCTTTGAGCGATAAGGGCGATTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGGCGGGCCGGGAGACAGCCTTTTTCTTTGATCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGTGAGTCCCTGTGCAACAATCCGAAAATTCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTACACACAACCGAATTGTAAGTGATAATTTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGACAGAACGGGTTGAATGGGAAGGTAAGCCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCACAAAGTTGTCACTTTGTCTCGTCAGGAAAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATTTTGCATTTGCTGAAAAAATCTTTGACCTTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCTGGTGTACCTAGCCTACAATCTTAGTTTAAATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATTTACTTTTTAATGAAGGCACGCCATAATTTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGTGCAAAGCTACGCCCATCGATTTCCCGTCTGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGGGAGATTGGAATCACAGCCGAAAAATAGGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCGGCTTTTTTAGCTCCCTCAGTAATGATTATTGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCAACTATACCGATGATTTCGGTACTGAATACAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCGTATTTGCGGGTGTTGGAGCTATACTCAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTATGGTATAATGAAAGTACAAACAAAGAAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGATTATTTCCGTGGCTATTTTTAAGCATTGCTCAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATAAAAGTGCCTCTTTAATTCCGGCTTCTAGAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTACTTGCAACTTATTCTCAATAAAAAATCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGAGGCTTGAGCTAATTCAAATTTTTCACGCGCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTCCTTCCCTCTCGGCTTTTGCCCGGATAATCGGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAGTTCTGTAGAAAACGACTTAGATATACAGCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTGTATTCCTTTGGTGCGAGAGTATCGGGGTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTCCTTTATTTTTGGCTGTTTCTCCTAAGCTTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGGAGTATCCTGTAGATATGTACTTTTATAAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTTGTATTCCGTGGAAGAATACGAAGAAATGAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCGACATAAAACACATACTAACAGTCCTAACCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGCTAGGCTAATAGCGGCACTGATTAAAATTTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAACTGCCTTATTTTCTGGCAGTTTTTTCAAAAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TACTCGTCGGGAACCCTATCACCCGCTTTCGGTTCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGCCATTGTCCGCAATGGTAGCCCTAAGCTATCTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCCAATAAATCCAATTCTCGCCGGCGCGTCTTGACA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACAGAAATATTGCTGATTTCGCCGCTATGCCACGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTCGGAACAGCAGTTGCGGCGGTGGCTGAATAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATTACCACCGGCTTAATCCACCCAGACTGCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGGGAAAATCTGCCCTTGTCGCAGATGCCCAAATATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATGATTTTCTAAATATTCAGCTATCTCTAGCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATTTACTTTTTAATGAAGCCACGCCATAATTTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCACTTTAGGCTAGTGTTTGCCCTCTCGTGAAAAAGCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

>NC_010296|22|5|2826228-2829166|CRT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTTAAGACAGTGCCTTTGAGCGATAAGGGCGATTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCAAATGCAAAATCTTCGGATCAAGCAGAATTATCTG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AGGCGGGCCGGGAGACAGCCTTTTTCTTTGATCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTGTGAGTCCCTGTGCAACAATCCGAAAATTCCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTACACACAACCGAATTGTAAGTGATAATTTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGACAGAACGGGTTGAATGGGAAGGTAAGCCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCACAAAGTTGTCACTTTGTCTCGTCAGGAAAGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAATTTTGCATTTGCTGAAAAAATCTTTGACCTTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCTGGTGTACCTAGCCTACAATCTTAGTTTAAATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATTTACTTTTTAATGAAGGCACGCCATAATTTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGTGCAAAGCTACGCCCATCGATTTCCCGTCTGGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TGGGAGATTGGAATCACAGCCGAAAAATAGGATCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCGGCTTTTTTAGCTCCCTCAGTAATGATTATTGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCAACTATACCGATGATTTCGGTACTGAATACAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCGTATTTGCGGGTGTTGGAGCTATACTCAAAAAGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTATGGTATAATGAAAGTACAAACAAAGAAAAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTGATTATTTCCGTGGCTATTTTTAAGCATTGCTCAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATAAAAGTGCCTCTTTAATTCCGGCTTCTAGAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATTTTACTTGCAACTTATTCTCAATAAAAAATCA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CAGAGGCTTGAGCTAATTCAAATTTTTCACGCGCTA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTCCTTCCCTCTCGGCTTTTGCCCGGATAATCGGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TAAGTTCTGTAGAAAACGACTTAGATATACAGCTT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ACTGTATTCCTTTGGTGCGAGAGTATCGGGGTATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTCCTTTATTTTTGGCTGTTTCTCCTAAGCTTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTCGGAGTATCCTGTAGATATGTACTTTTATAAGG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TTTTTTGTATTCCGTGGAAGAATACGAAGAAATGAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	ATCGACATAAAACACATACTAACAGTCCTAACCAG
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AAAGCTAGGCTAATAGCGGCACTGATTAAAATTTC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GTAACTGCCTTATTTTCTGGCAGTTTTTTCAAAAAT
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	TACTCGTCGGGAACCCTATCACCCGCTTTCGGTTCC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTGCCATTGTCCGCAATGGTAGCCCTAAGCTATCTGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GCCAATAAATCCAATTCTCGCCGGCGCGTCTTGACA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AACAGAAATATTGCTGATTTCGCCGCTATGCCACGC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CCCTCGGAACAGCAGTTGCGGCGGTGGCTGAATAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	AATTACCACCGGCTTAATCCACCCAGACTGCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	GAGGGAAAATCTGCCCTTGTCGCAGATGCCCAAATATC
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATGATTTTCTAAATATTCAGCTATCTCTAGCCGA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CATTTACTTTTTAATGAAGCCACGCCATAATTTAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC	CTCACTTTAGGCTAGTGTTTGCCCTCTCGTGAAAAAGCAA
GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|223979
NC_010296.1|WP_172456657.1|2834968_2835115_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein	unknown	unknown	gnl|CDD|373239
NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase	unknown	unknown	gnl|CDD|369439
NC_010296.1|WP_002788601.1|2838473_2838902_+|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl|CDD|350315
NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|237771
NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|274976
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|187768
NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|182528
NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein	unknown	unknown	gnl|CDD|377648
NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|273776
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT	unknown	unknown	gnl|CDD|226863

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	2.2e-55	182.7	0.0
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	8.4e-102	335.1	0.0
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	5.3e-50	164.8	0.0
NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	1e-144	475.5	0.0
NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	4.5e-148	486.9	0.0
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.5e-33	107.2	0.2
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.5e-57	190.1	4.2

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	4.19936e-14
NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase	gnl|CDD|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	6.97733e-41
NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.89417e-26
NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl|CDD|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.0937e-39
NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase	gnl|CDD|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	1.94864e-81
NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	7.22438e-27
NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.03189e-44
NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl|CDD|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.51021e-16
NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.10684e-42
NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	4.28469e-143
NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.67317e-55
NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	8.78214e-75
NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein	gnl|CDD|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	0.000179215
NC_010296.1|WP_002788601.1|2838473_2838902_+|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl|CDD|350315	cd18748, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.9121e-83
NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.91614e-37
NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT	gnl|CDD|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	7.4271e-08

Protein sequences

>NC_010296.1|WP_125730310.1|2824734_2825957_+|ISAzo13-like-element-ISMae28-family-transposase
MELTDSLKKLLSETALQLKGAAKRRFMAQTVLELGYGGQTLAAQELGWNRTTIRKGIKELKRGIICVDNHSAKGRKKAEEHLPFLLENIKSLVDSQSQTDPSFKSQRLYVRLSAAEVRKQLISKYGYSDEDLPSEETIRVKLNNLGYRLKRVAKVLPQKKFPETEAIFEELANINREADEDPTMLRLSLDAKARVNIGLFDRGGKNRITVETNDHDFNPKTTLTPYGIFIPEFDELFLYFTASTVTSDFIVDILEDFWESEKSRFEKIKTLIINQDNGPENNSRRTQFMKRIVEFSQKYQVNIRLAYYPPYHSKYNPIERTWAVLENPWNGSILDEIETALKFAQTMTWKGKHPIVKLITETYEKGVKLTKKAMEKIEEKIERLTESTNQDFPDLGQWFIDIYYDKT
>NC_010296.1|WP_002742874.1|2814262_2814535_+|CRISPR-associated-endonuclease-Cas2
MYFVVSYDISDDKRRTKIHNTLKSYGQRVQYSVFECDLTDTQYAKLRGRLSKLIKPDTDSIRFYFLCACCRGKVERIGGELPRDNTIFFV
>NC_010296.1|WP_012266061.1|2813245_2814250_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYVTREDAFLGKNDERLTVKASKETILDVPLLNVEGVVIFGRGSVSPALVIELLERHIPLSFVTATGKYLGRLEPEMTKNIFVRRAQWQAAGDSPKAIHLVRGFVRGKLKNYRNILLRRQRDRKELDLQTAIACLEAAIGSIETTSAIDSLRGLEGAGSAAYFSCFDSLILGDTFTFASRNRRPPRDPVNSLLSLGYALLRHDVQSAINLVGFDPYLGYLHYQRYGRPSLALDLMEEFRAIVVDAVVLNGVNHPYLTPEHFTTEPLSGAVSLTREGLQIFLRLYEQKKQSKFKHPVMGKQCTYQEAFEIQARLMAKYLMDETDKYPPLILK
>NC_010296.1|WP_012266060.1|2812646_2813240_+|CRISPR-associated-protein-Cas4
MDESDYIPIAALNHYAYCPHRCWRMFVAGEFLDNSYTIEGTNLHERVHTVGAANREEIWQIRAIWLKSDNYRLIGKADLIESHDGEFIPVEYKRGSKGEWDNDELQVCAQAICLEEMTGKRLDTGYIYYASSHQRQPVAIDLALRQRAIATIRAIETLIQTGKMPPAVYSPRCKGCSLFDRCLPRLTEKVQRYREED
>NC_010296.1|WP_012266059.1|2811810_2812644_+|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLTPRSPIYPNFLTGRHLHALFLTLVSSVDQELGKILHTAEADKAFTLSPLQMQSGGKTINSPQWRYERPIAPETPCWWRISLLDDRLFGKLTPLWLNLNPKHPWHLGSADLVITSVLATPQSVQPWANSCTYQYLYENASETNREFDFLFATPVTFRQGKFDSALPTRELVFNSLLNRWNRYSAIPFDSIVLESIFPSFFDIQTKLADEAYKNQSFGCVGEIHYRLLGEVEPAKIKAINVLADFALYAGVGRKTTMGMGMTRRIAKEKR
>NC_010296.1|WP_012266057.1|2811003_2811570_+|Uma2-family-endonuclease
MTLISSKPLTLPEFLSLTDPEGDITYELVDGEAIAKMSPKFFHSRLTGALFLVLDRWNQGRGEVGIEWAIILSKNGRDWCPVPDLLYISLERLGDITLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRVWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>NC_010296.1|WP_012266055.1|2809918_2810485_+|Uma2-family-endonuclease
MTLISSKSLTLPEFFSLTAPDGDITYELVDGEAIPKMSPKFFHSRLTLALSSILDRWNQGRGEVGIEWAIILSKNDRDWCPVPDLLYISPERLGDIPLTDEACPVPPELVIEIISPEQSFSSLSEKAVDYLKAGVSRIWIVDPRAKQITIFYPDAPPAIKKGDDEISDILLPDLTLTPRQIFAKARLS
>NC_010296.1|WP_012266054.1|2807147_2809871_+|CRISPR-associated-helicase-Cas3'
MSKSNPQPFFKFGRVFFPGEPTIAPDKILFQPLGNHVGNVRQLARKWQDGNFSLERVIEGINLHDKAKPQTFKIRVETNKQGEFTKYTYSFKGHRFKVDEPQNLWVQALARGHHDYSTKEIIKDTYQLKKDPKYQKIFSKDPLQYAKELYILEMCDQIEAELACRVIGDDEQAKSRTFMDFTITKGTSEDSNHRVFYLDPYPFKEPTITLNFRSWTYNLSDEDKNQLQQLRENGKDKELGGKLNTLVKEWWKKNEHTISEDRAITAIIKPDNSNTYSPSEKSENAILWWYRELANFQPNPMQEQVFQTMVENKHPAFILKAPTGVGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLEDQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEIKSSNNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDDISFTNFCSLVKALYEAGRSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEKLNNFYQQILKQDYSNLKQFEWVDDIVYDVKEPTNLQQKLTSIALAEWNSNPSHRIIVSVETVKDAIAIYEKIKQKLNIKSSGQNEFLFLYHGRLSDIPKTSHYSRTNLYKRLKERDENDQAYILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNRKGNVEDAKIIVIGNNIPEFINTLSEAELEDYKTILKGLHARNFDPKAIMNCVSTKQKIDDYRVVELFSLLQDYVYNADLTCQSAHEKGLVITRSWTPSVTLVYDDGKQGDSLEKIVKESPQIQVPIDRLINNEGNYTNQYANVSVYEWIYDKEETRYKLEPLKYWGCAYSKDMVIKVCAVQEGAIYDHELGFKDLPRVFIKCRSNGYQERLRYNPTEDRSVVINYTSALTQD
>NC_010296.1|WP_012266053.1|2806330_2807155_+|hypothetical-protein
MYCLTFKIIPTAAMTFRILPGSILNIATYPFVPPTTFSGFLRRIVMLSEGLDIPETSINKENPPYFTLPRQYIALGAYPVLDKWSGVHRTHRKGTRSFNHDVFSRLYIDGDRENFQLHTWEYFIAEELIGYVVSESKSSLEAFSNLQGVGCKIGKEGFAVIDEVSESIRLQRKILSAHPSTVVPMEALIQRNPCINRCDIYNLYRHEWSADQTQDEDKGLFDTERSPINGFIPFVAAYYPEKANPLPTLDFYTDGNLQIPVALVELLQGESINV
>NC_010296.1|WP_012266052.1|2805433_2806327_+|hypothetical-protein
MATESKVTTGLPKTDANKPRLHFDIYAILEGSQELYLGHEVQVNVNLVEIVKLSTKDGKEIEKCYISPTKRRGVERRCLLWSPVKSGELLGDKQNCGIPKTCAEPTCPICATFGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPALLVNRNDETPTPFRREYNQPGILYPVYNHALSITDQDFSAVAYAFLDSLPRIGSGNPKGIAIAETDDRTPLLVLDRYLSPRGKRPIVSPSETDPQKAINDFLYLALYPETNFTNHIQEAHFDRWIGNEALAKLQEYSAIFVDTVLQA
>NC_010296.1|WP_002788612.1|2829464_2829737_-|LapA-family-protein
MNTISNFLASAIVGGWIMTMAVFAIQNIQPVSLKFLQFESIKVPIGVLLAFSLGIGFFMAAFIPAFLRKSKKSPRSRFPPPQPGLDEFDF
>NC_010296.1|WP_148204751.1|2829902_2830301_-|hypothetical-protein
MIGIVLKEGIKVEVSKKMEKWAAQELQYADLGDTRRKKRLISIVENLASQLSTSVRHSSANLAAVSATSDFGNSPYFQPSVVRMIASLGVFLGRKGDGEPSVKTIWLGLGRLHDISQTWKLSDQISSPIEPP
>NC_010296.1|WP_012266085.1|2830388_2831318_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MLENAKKITVIGGGIWGQTLANLARLNHLAVRVWSRHTGEDLGAIIADTEVIISAVSIKGVVPTIEKLQQLQLNSRIIIVTATKGLEPITTRTPFHLWNQAFPANPLVVLSGPNLAKEINQGLPAATVVASYLQKAAILLQKLLSGESFRVYLNSDPLGTELGGTLKNVMAIASGVCDGLQLGTNAKSALLTRALPEIVRVGTCLGGCQETFFGLSGLGDLLATCNSPLSRNYQVGYQLALGLSLPEILAKLEGTAEGINTTEVLMRIAQEKNLYVPITCQVDRLLRGEISPQVAVYELMRRDLKAEFD
>NC_010296.1|WP_002799564.1|2831641_2832073_+|NUDIX-hydrolase
MTNYRNPAPTVDIIIELIDSPHRPIVLIERKNPPFGWAIPGGFVDYGESVETAAIREAYEEISLQVQLIEQFHVYSDPNRDPRQHTISIVFIATAKGQPIAADDAKKVGIFHLWEFPQPLCFDHDRILNDYRRYRDYKIRPTH
>NC_010296.1|WP_002799563.1|2832133_2833351_-|ABC-transporter-permease
MLITESLKMAVSTLGANKVRSGLTMLGIIIGNASVVAMIGIGQGAQTLANDQFANLGPNTIFVVPGSRQARNTTVNLPKTLVLADAQAIAEQVPTVAEVAPEINARFLISHRNRNMTALVTGSTPEYASVRNFTLEKGRFINNIDLARNKRVTVIGTEVAAQLFPTQNPLGQQLRIKNLSFEVIGILEAKGSFFGNNQDEMLIIPLSTMNSQLVGKTGPYGVELSWISLTARSGEEIRAAKFQIQNLLRLRHKIVAEDDFRVETAKQMIEIFATITQGLTLLLALIAGISLIVGGIGVMNIMLVSVSERTGEIGLRKAIGAREQDILLQFLIESTLVSIAGGALGILVGAGAIVLVSSFSPLAATVSATAVALSLSVSTGIGLFFGVFPAYRASKLEPIVALRSV
>NC_010296.1|WP_012266087.1|2833548_2835027_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MAITVLGKSNRPLFWIFGLMASGFLAVGVVSYRLLQTPPPGLELAKMTVPAQRETLAVEIKASGRVEPIQSVNISPKNPGRLVRLLVDQGMIVKKGQTLAVMDNLEVYARGMQSEAHLREALANLEQAKRSIPEDIRQLQARFYQAQASYKQLEARLAQAKERIPKDLDQLQAQVQAAQSRFRLAENRVKRNENLVREGAIAQDQFDAVLNEYLNAKANLDESIRRLEQADKTASPEVAGIEQEMIGAAAAIAEAKFALEQRQKTQETELARLESSVAAARADLEQIKIQYRDTVITAPFDGIVTQKYATEGSFVTPTTSASSTASATSTSIIALASGLEVIAKVPEVDVGLLQRGQPVRIVADAFPEEVFEGRVILVAPEAIIEDNVTSFEVRIGLVTGRDKLKSKMNVDVTFVGQQLDNALVVPTVAIVTREGKSGVLVPDAENKPSFQPVSIGLVLDDKTQILSGLEAGEKVFIDLPEGAEDTSKTNQK
>NC_010296.1|WP_172456657.1|2834968_2835115_+|hypothetical-protein
MSPNIQNRGRFDFPNTVIAIDQPKVNWLYTNVSRAAFVVSLANNSQAR
>NC_010296.1|WP_041804113.1|2835149_2836031_+|tetratricopeptide-repeat-protein
MPKLQLIISLLVFFVAGSPLAFSQALLPYAIEPELEQMEQAGIEIAEDAIQLARFRRTDAALGRAKLAVQLAPHLYQTWFILGSLYLQDDQVQLGIEALNQSLSLAPADAHANIKFSLGSAYFQNQDYQSAIAQIEAGLQMKPDISPALFDLGNSYLKLEQYPAAIAAYEKAVSQDKNFWPAINNIGLVKYEQGDKEAALKDWRTALKIDPKQPEPQLAIAVAVYSQGKTEEGIKLAQAALTSDSRYVSLEFLEENLWGQRLLQDTEKMFNHPKMKDFIARLPQPTPEAEEEN
>NC_010296.1|WP_002793069.1|2838224_2838464_+|twitching-motility-protein-PilT
MQNLRQVSLLTSGQEQVLTIPPELALSSTEVLLRKEGHRLIIEPISSGSLISLLTTLPDITDNFPDIDEGLLPLDDITF
>NC_010296.1|WP_002788601.1|2838473_2838902_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MTYQYLLDTNILSHLIRYPQGQVFQHIVDVGEESVCTSIIVACELRFGVVKSGSSRLVQQLERILEFLTVLPLESTVDKHYALIRKHLEQAGTPIGPNDLLIAAHSLALDLTLVTANTREFERVPALKLENWLIDSVIIFGG

Crispr_ID: NC_010296_23

• CRISPR_ID: NC_010296_23
• CRISPR_location: 2869751-2869835
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_23

Consensus_repeat	Method
CTCATATTTTTAGGTTTTTTGTAG	CRISPRCasFinder

spacers of NC_010296_23

>23.1|2869775|37|NC_010296|CRISPRCasFinder
AACGTAGGTTGGGTTGAAGCATGAAACCCAACGCCCG

CRISPR arrays and Neighbor proteins around NC_010296_23

CRISPR arrays

The CRISPR arrays of NC_010296_23

>merge|NC_010296|23|2869751-2869835|CRISPRCasFinder
CTCATATTTTTAGGTTTTTTGTAGAACGTAGGTTGGGTTGAAGCATGAAACCCAACGCCCGCTCATATTTTTAGGTTTTTTGTAG

>NC_010296|23|21|2869751-2869835|CRISPRCasFinder
CTCATATTTTTAGGTTTTTTGTAG	AACGTAGGTTGGGTTGAAGCATGAAACCCAACGCCCG
CTCATATTTTTAGGTTTTTTGTAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012266107.1|2860785_2861706_+|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|238557
NC_010296.1|WP_002797971.1|2871934_2872978_-|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270226
NC_010296.1|WP_002768372.1|2871581_2871923_-|NIL-domain-containing-protein	unknown	unknown	gnl|CDD|378174
NC_010296.1|WP_012264242.1|2878829_2879921_+|ISAs1-like-element-ISMae8-family-transposase	unknown	unknown	gnl|CDD|379382
NC_010296.1|WP_002797973.1|2874148_2874829_-|ribonuclease-III	unknown	unknown	gnl|CDD|274024
NC_010296.1|WP_041804116.1|2874887_2875442_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002799501.1|2866583_2867195_-|DUF4276-family-protein	unknown	unknown	gnl|CDD|379470
NC_010296.1|WP_002797972.1|2873148_2873928_+|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223736
NC_010296.1|WP_002743720.1|2857153_2857450_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804758.1|2880574_2881354_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266116.1|2875650_2877507_+|threonine--tRNA-ligase	unknown	unknown	gnl|CDD|237050
NC_010296.1|WP_012266114.1|2870719_2871562_-|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl|CDD|131194
NC_010296.1|WP_012266109.1|2862008_2863112_-|GTP-binding-protein	unknown	unknown	gnl|CDD|223597
NC_010296.1|WP_012266117.1|2877620_2878652_+|GTP-binding-protein	unknown	unknown	gnl|CDD|223597
NC_010296.1|WP_002799500.1|2867219_2868407_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|226984
NC_010296.1|WP_041804115.1|2856090_2856825_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl|CDD|181800
NC_010296.1|WP_012266106.1|2858851_2860651_-|threonine--tRNA-ligase	unknown	unknown	gnl|CDD|237050
NC_010296.1|WP_002743713.1|2863367_2863805_-|DUF4079-domain-containing-protein	unknown	unknown	gnl|CDD|372553
NC_010296.1|WP_012266104.1|2857503_2858547_-|IS630-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_080506984.1|2863809_2866446_+|M1-family-metallopeptidase	unknown	unknown	gnl|CDD|223385

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012266107.1|2860785_2861706_+|zinc-ABC-transporter-substrate-binding-protein	gnl|CDD|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	1.99813e-113
NC_010296.1|WP_002797971.1|2871934_2872978_-|sulfate-ABC-transporter-substrate-binding-protein	gnl|CDD|270226	cd01005, PBP2_CysP, Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic binding fold superfamily. This family contains sulfate binding domain of CysP proteins that serve as initial receptors in the ABC transport of sulfate and thiosulfate in eubacteria. After binding the ligand, CysP interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The CysP proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.83997e-152
NC_010296.1|WP_002768372.1|2871581_2871923_-|NIL-domain-containing-protein	gnl|CDD|378174	pfam09383, NIL, NIL domain. This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.	3.59978e-15
NC_010296.1|WP_012264242.1|2878829_2879921_+|ISAs1-like-element-ISMae8-family-transposase	gnl|CDD|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	6.21012e-26
NC_010296.1|WP_002797973.1|2874148_2874829_-|ribonuclease-III	gnl|CDD|274024	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. [Transcription, RNA processing].	9.30845e-88
NC_010296.1|WP_002799501.1|2866583_2867195_-|DUF4276-family-protein	gnl|CDD|379470	pfam14103, DUF4276, Domain of unknown function (DUF4276). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 224 amino acids in length. There is a single completely conserved residue E that may be functionally important.	7.43839e-27
NC_010296.1|WP_002797972.1|2873148_2873928_+|Crp/Fnr-family-transcriptional-regulator	gnl|CDD|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.79768e-06
NC_010296.1|WP_080506984.1|2863809_2866446_+|M1-family-metallopeptidase	gnl|CDD|223385	COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism].	3.14187e-172
NC_010296.1|WP_012266116.1|2875650_2877507_+|threonine--tRNA-ligase	gnl|CDD|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_010296.1|WP_012266114.1|2870719_2871562_-|sulfate-ABC-transporter-permease-subunit-CysT	gnl|CDD|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	1.41121e-129
NC_010296.1|WP_012266109.1|2862008_2863112_-|GTP-binding-protein	gnl|CDD|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.03638e-121
NC_010296.1|WP_012266117.1|2877620_2878652_+|GTP-binding-protein	gnl|CDD|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.87639e-97
NC_010296.1|WP_002799500.1|2867219_2868407_-|AAA-family-ATPase	gnl|CDD|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	2.9728e-54
NC_010296.1|WP_041804115.1|2856090_2856825_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl|CDD|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	3.92621e-144
NC_010296.1|WP_012266106.1|2858851_2860651_-|threonine--tRNA-ligase	gnl|CDD|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_010296.1|WP_002743713.1|2863367_2863805_-|DUF4079-domain-containing-protein	gnl|CDD|372553	pfam13301, DUF4079, Protein of unknown function (DUF4079). This is an uncharacterized family of proteins.	3.2075e-27
NC_010296.1|WP_012266104.1|2857503_2858547_-|IS630-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.07816e-24

Protein sequences

>NC_010296.1|WP_002799500.1|2867219_2868407_-|AAA-family-ATPase
MSKNSIPRIENLRVQNYRALQDLELKSITPLTVFLGPNGSGKSTIFDVFAFLSECFTVGLKKAWDRRGRFKELRTRGQEGYIIIELKYREKLASPLITYHLAINEANNRPYVAEEWLQWRQGAKGKPYRFLDFKEGGGIVVSGENPKPKDKRISERLDSPEFLAVSTLGQLAKHPRVSALRRFITSWYLSYLTADNTRTQPEAGAQERLSPTGDNLPNVIQYLKEDHPQRLESILQTLSRRIPRLEKVEASIMPNGQLLLQIKDAPFQEPILAKFASDGTLKMLAYLTILYDPSPPQLLGIEEPENHLHPRLLPELAEECRAATASTQLMVTTHSPFFVDGLKPEEVWVLYRDENGFTQAKRTSAMQGVKEFIQNGALLGQLWMEDYFDVGNPSI
>NC_010296.1|WP_002799501.1|2866583_2867195_-|DUF4276-family-protein
MHLEFLVEEFSTQECLNQILPKILFENVTYKIHAFRGKSDLIKKLPERLKGYQCWIPDDYRIIILVDRDNEDCQMLKEKLENIAQQTGLITKTISEDKKTFQVLNRIAIEELEAWFFGDIQAIVSAYPKVSTNVGQQAKYRKPDEITGGTWENLEKILQKAGYHRGGLEKVKAAREISQFMTPAHNCSPSFQIFYQGLLAMIS
>NC_010296.1|WP_080506984.1|2863809_2866446_+|M1-family-metallopeptidase
MGLLLARKGTTDRVNLSLPDKNQQVRANMSHLTIDTENNQRQPFELPGAKPHYNPDRPGQVNHIFLDLIIDIPQQSFQGSCQITLTPIRQGISSLTLDAVDLNINSVFIEGISQPFDYDRSLLTIHLLQPTTDKPIILTINYQVNQPQRGLYFIGPDEYYPDKPMQVWTQGEDEDSRFWFPCFDYPGQLATSEIRVKIPQPYIAISNGELISVEPVGEDRIYHWSQKQIHPTYLMTLAVGDFAELCDSWNGVPVTYYVEKGREEEGQRSMGKTPRMIEFFSQKFGYPYPYPKYAQVCVDDFIFGGMENTSTTILTDRCLIDQRASIDHTWTESLVAHELAHQWFGDLVVIKHWSHAWIKEGMASYSEVLWTESEYGKAAGSYYLLGEARSYLEEDTSRYRRPIVTHVYREAIELYDRHLYEKGACVYHMIRSILGEDLFGKAIQTFVRDNAHKTVETVDLLRAIEKATGYNLLFLFDQYVYRGGHPDYKVAYSWDNQNNLAQLTVTQTQDEKELFDLKIPVAFAYLNSEDITYNLRIHQKEQTFYFPLAQKPDFVKFDRGNNFLKTVTLEYPIGELKAQLQQDTDPISRIYAAIAIAKKGGLEAIEALGTSLENEPFWGVRVEVAKQLATLGLDQAVTALIKGLNDEKAQVRRAVVEGLSEIKTLDSYNALKSLLETGDASYYVEAAAARGLGSMAVGQLQNKEGEIIDLLNHVLQSRKGWNEVVRAGAIGGLSQLKTSPAALESILTYTALGTPQPLRLGAIRALGAISSGQSTDKLTVILERLETIAKETFFLTQVAVCNALGQIENAKAIVILQALSDRTPDGRVRRVAEEAVQKVQKKLGSEKAIQEIREELEKMKQENQELKSRLTKLEAKNG
>NC_010296.1|WP_002743713.1|2863367_2863805_-|DUF4079-domain-containing-protein
MNLPSFLWLWKIAAWSMGFTLFAYFLLAVSGVNMGYRRLAGQSRPKWLRSFHLLSGLIMVALVLILLGIGLVGTIGHYGSLGHSSHLIAGLSVVFLVFVSAISGLNITTRPPLARSLHIGTNLLLFLGFLFVTLTGWDVVQKYLQ
>NC_010296.1|WP_012266109.1|2862008_2863112_-|GTP-binding-protein
MQTVESQAINTMSVPKKGLPVTIITGFLGSGKTTLLNHILSNQQGLKTAVLVNEFGEIGIDNELIISSDDSMVELNNGCICCTINEDLIQAVYKILERPEKIDYLVVETTGLADPLPVALTFLGTELREMTRLDSIVTMVDCANFSLDLFNSQAALSQITYGDIIVLNKTDLVDEADVDSLEIRIRDMKQGARILRTSKSQVPLPLILSVGLFESDKYFDTEEEHHDHDHHDHDHDHCDHDHDHDHHHDHDHDHHDHSNHLEVDGFTSISFASDQPFSIRKFQYFLDNQLPESVFRAKGILWFDESPKRHIFHLSGKRFTLEDDEWKGTPKNQLVLIGQNLDHETLKEQINSCLILPAVNRGKGFGK
>NC_010296.1|WP_012266107.1|2860785_2861706_+|zinc-ABC-transporter-substrate-binding-protein
MKKLILSCLFLGLVACNDAVNTTDNQKPKVISTSTIIADLTARVGGEEIDHQDILKPGDDPHVYEPVPADSVALEKADLILYNGYNLEPGLIKMIDSTAVKAKKVAVGEAITPLQLEKEGQKVPDPHVWGSAKNGIIMVKKIRDQLIELSPEDKEIFTENAAQLIRELENLDRWITAAIKTIPPSQRQLVTTHDAFQYYAHAYGLKVAGTLIGISTEEQPSAQTVKNLADAIKNLQVPAIFAETTINPALITTVAEEAGVKLAPKQLYSDSIGAVGTRGDSYVKMLRENTRSIVESLGGKVPQEGQ
>NC_010296.1|WP_012266106.1|2858851_2860651_-|threonine--tRNA-ligase
MDNQAPIKLPKTSESDHLKRIRHTTSHVMAMAVQKLFPKAQVTIGPWTETGFYYDFDVPEPFTDKDLKDIKKEMVKIINKKLPVIREQVSREEAEKRIKAINEVYKLEILAGIQEPITLYHLGDAWWDLCAGPHLDNTSELDPKAIELETVAGAYWRGDENKAQLQRIYGTAWENPQQLAEYKRRKEEALKRDHRKLGKELGLFIFSDSVGPGLPLWTPKGTLIRSLLEDFLKKEQLKRGYLPVVTPHIARVDLFKISGHWQKYKEDMFPMMADDEESAGKEIGFVLKPMNCPFHIQIYKSDLRSYRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDKEFLSVVDLILTVFKSLQLKNFKARLSFRDPESDKYIGSDEAWEKAQSAIRKAVQTLGMDYFEAPGEAAFYGPKLDFIFQDALEREWQLGTVQVDYNLPERFELEYVAEDGNRKRPVMIHRAPFGSLERLIGILIEEYAGDFPLWLAPVQIRLLPVSDTQLDYAKEVTAKMQLLGIRAETDTSGERLGKMIRNAETAKIPVMAVVGAKEMESNSLSIRTRATGDLGVISVEEVVAKLESAIQNHGNF
>NC_010296.1|WP_012266104.1|2857503_2858547_-|IS630-family-transposase
MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHQKICQLAGISPNTLLTYLRDYQEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPATINEAVYRREELTGIKRSPTQVRKFLKSMGMKCLKVGSLPSKADPDEQEDYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELLEKIAALGLMIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKLVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>NC_010296.1|WP_002743720.1|2857153_2857450_+|hypothetical-protein
MNQNPPNDDNPNLPDRRKEDFLYPRAPYYGEFKPENLLFNANLQEFAQKVSFICNLETGGKISSLEAYQKIKALWKDLKQSKKGLGIGENPFQKDDDT
>NC_010296.1|WP_041804115.1|2856090_2856825_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MITMEKLYEGKAKILYQTDDPDILLTYYKDDATAFNAQKRGQIVGKGEINCTVSTALFQWLESLGIPTHYIDRPSSREMRVKAIKIIPLEVVVRNIAAGSLCKQTGLKEGKVLPFPLVEFYLKDDALGDPLLTPDRIKVIDIASEEQVNQLRDLALQINQYLQEFFDKCQIILVDFKLEFGVDKTGKIYLGDEISPDTCRLWDKTQEDAQARILDKDRFRRDLGDVETAYQQVQARVLQQIESL
>NC_010296.1|WP_012266114.1|2870719_2871562_-|sulfate-ABC-transporter-permease-subunit-CysT
MANPQLSLSPSQPLKKVSIPWVITISYLVVLLVLPAAALFAKSLTLGFAEFWRVATLPISLSAYQVTFFTSLIAGLIDGVFGTIIAWVLVRYRFPGKKIVDACVDLPFALPTSVAGLVLATVYSDNGWLGQFFAPFGIKISFTILGVFVAMLFIALPFIVRTLQPVLQEMEKEVEEAALSLGASSWQIFWRVIFPTILPAILTGVALGFARAIGEYGSVVIISSNIPFKDLIAPVLIFQRLEEYDYTGATVIGMVLLLVSLFMLVVINFLQQWGQKYKVK
>NC_010296.1|WP_002768372.1|2871581_2871923_-|NIL-domain-containing-protein
MDNQPQWQTINHPQSDLHLDQSGLDRPTSRRIKIRIPKQYINEPIIARLGSFPGLKVNIFSALLAANNNQDGWFDLQLQGNSQGIENALSYLADLDVEVWYDSAQVLEEADNW
>NC_010296.1|WP_002797971.1|2871934_2872978_-|sulfate-ABC-transporter-substrate-binding-protein
MQSSQSCLSLLMATVLTGGMLVSCTPSPTNSGNDSQKPVTVTLVSYAVTQSAYEKIIPKFVEEWQQKTGQKVTFEQSYGGSGSQTRAVIDGLEADVVALALALDTKKIEQAGLIQPGWEKEATNDSIVHKSVVAFVPRDANIKINKWSDLAKDNIKVITANPKTSGGARWNFLALWGSVTQAGGSEQAAQTFVEKVFKNAPVLPRDARESSDVFFKQGQGNVLINYENEMILANQKGEKLSYTVPTDYNISIDNPVAVVDANVDKKGTRKVAEAFVQFLFTPAAQREFAQVGFRPVEPTVFKEFESKFPQIKNLFTVQDLGGWDKVQKQFFDDGALFDKILTKAGKS
>NC_010296.1|WP_002797972.1|2873148_2873928_+|Crp/Fnr-family-transcriptional-regulator
MGKSVKAKKTTLLQQLINQSFLFRGLEEAWLSQYLDADNLKLETLFSNRPVYTAFLPDEFLDVLYVILDEGVIVVRSTPLDRIIAISYPGGCFGMRSLPFSYGLASRAFPCLVESYKTTHVLKIPLSALEKIYNDNQSFRQRYCLLFELQQKFEYHLLNCSSYPPQAVATLLRALIYQERELGSQPDAENIYTFDLSVDVIARACQLNQRTVEQVLKGLQTVGLIASESTGDLIRVLDAEGLKEVYSATRDKVNWWPLR
>NC_010296.1|WP_002797973.1|2874148_2874829_-|ribonuclease-III
MSCLPPFQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTRLRSNLVKEEQLAQLGLEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLNAVKNYLHGLFIPVASHLVSQQSESSSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKRCQLQG
>NC_010296.1|WP_041804116.1|2874887_2875442_+|hypothetical-protein
MRRTILFLLFFPASLGIISQIFSPENLSAAILALGTLVMCMEQARMAAVDLGEIAQFQQKTSDPRLDRFFIVTISTIVLELSGFYVAALWIGWGALIVLVSQIWFHCLAKIQLQPSTGKIIDHGIGPRLPILLADGIGIIFVAFWLAKIAPLIMAMTLTTMLLIYGSIKYRPLVKIKNLPLVEE
>NC_010296.1|WP_012266116.1|2875650_2877507_+|threonine--tRNA-ligase
MVNQIKSPRAESPVIEEDSQKIVKIRHTCAHILAMAVQTLFPETKVAIGPWTETGFYYDFDRPTPFTPEDLEKIAAEMGRIIGKNLPIIREVLERSEITAEIERLNQPYKRSILERIPPDETITRYFIGSPDAGRSDREPSLIDGAVSPPEEFWWDLCAGPHLNSTGEINPDAFALESVAGAYWQGDEKQPQLQRIYGTAWQTPAELQNYLQQKEEAQRRDHRKLGQQLKLFSIQEDAGGGLVFWHPRGATMRYLIEDYWRQAHLEAGYQFLYTPHLANLDLWKTSGHWDFYRDNMFEAIELEQQSYQIKPMNCPFHVLTYQNDLHSYREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCLPEQIAAEILGVLNLTEKILSDFGFTNYQINLSTRPSKSVGSDSVWELATAALIEALNAKKWDYIEDQGGGAFYGPKIDIKIQDAIGRMWQCSTIQVDFNLPERFDMQYVARDGTRERPIMIHRAIFGSLERFFGILIENYAGDFPLWLAPIQVRLLPVSDEQQHYALGVAMQLKQAGYRVEIDKTGERLGKQIRTGELEKIPVLAVIGKREVSSKTLSVRTRQGGDLGSMTLVDLLGKMQTAILSKTNL
>NC_010296.1|WP_012266117.1|2877620_2878652_+|GTP-binding-protein
MSSLIIPLSDSLPCLPKSGMPVTIITGFLGSGKTTLLNHILDNKEGLKVAVLVNEFGDINIDSQLLVSIDEDMVELSNGCICCTINDSLIETVYQVLEKEIPVDYLIIETTGLADPLPIILTFLATELKYLTRLDSIITLVDSETFTADHFDSNIALSQIRYGDVVILNKIDRVSGKKLDDLEKFIRREKEGIRLLKSSYGQVPLGLLLDLGLTKEELYKNQFRDFQKNRQSSSDNQSPEDFNFVSFVSNKPFNLDKFEPFLTEKMPMNVFRAKGILWFQQSDLKHIFQLSGLRYDLQAVEWDTSPQNQLVFIGRNLNKEEILTQLNECLASSQKIKKDKLSR
>NC_010296.1|WP_012264242.1|2878829_2879921_+|ISAs1-like-element-ISMae8-family-transposase
MLSLIEKLKQVKDFRKDKGKRHPLWIVLVVIILGTMLGYSGYRELGEFAKNNRHRLSKEFNIIPERVPSYSTIRRVMMGVDWQSLLKMFNEWALEEYGQRDDINWLGMDGKSLKNTLKNPNNEQQNFIMFVSLFSQESGLVLHLKRIENKKGSEIDEGQAIIEDCSLQNKVFTGDALHCQKKTISLIAKSKNDYVITVKGNQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVRKNERQGFENLRRVIKVERKGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQLHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST
>NC_010296.1|WP_041804758.1|2880574_2881354_+|hypothetical-protein
MIIVVTGGIAAGKTHWIREQIAKQTQPSLYFSPQTETFPIDRLTLESDFPQLSCVSREEEDLLSSLSMENTIYMEVPWHLDTQSLESFLKPLNCHRVAITSPEAEIPEGQVPVDEIVFSPVKTTIKGDQWLKKREIQIYRAVLTGEVLDFSSLTTFWTELTQGAYGEVLRVKSIFDIIDGQCIYGEFMDEWPEKDFQSLNFPLNLDGRPNRFSGIEIVGRNLDKPTIADTLSDCCLSDEALLYYQQQFQESLEPEMDLI

Crispr_ID: NC_010296_24

• CRISPR_ID: NC_010296_24
• CRISPR_location: 3148751-3148912
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_24

Consensus_repeat	Method
ACCCCCCTTATCAAGGGAGATCCCCCCGCCTACCGGCACCCCCCTTATCAAGGG	CRISPRCasFinder

spacers of NC_010296_24

>24.1|3148805|54|NC_010296|CRISPRCasFinder
GGGCAGGGGGTATCGGCACCCCCCTTATCAAGGGGGGACTAAGGGGGTATCGGC

CRISPR arrays and Neighbor proteins around NC_010296_24

CRISPR arrays

The CRISPR arrays of NC_010296_24

>merge|NC_010296|24|3148751-3148912|CRISPRCasFinder
ACCCCCCTTATCAAGGGAGATCCCCCCGCCTACCGGCACCCCCCTTATCAAGGGGGGCAGGGGGTATCGGCACCCCCCTTATCAAGGGGGGACTAAGGGGGTATCGGCACCCCCCTTATCAAGGGAGATCCCCCCGCCTACCGGCACCCCCCTTATTAAGGG

>NC_010296|24|22|3148751-3148912|CRISPRCasFinder
ACCCCCCTTATCAAGGGAGATCCCCCCGCCTACCGGCACCCCCCTTATCAAGGG	GGGCAGGGGGTATCGGCACCCCCCTTATCAAGGGGGGACTAAGGGGGTATCGGC
ACCCCCCTTATCAAGGGAGATCCCCCCGCCTACCGGCACCCCCCTTATTAAGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012266352.1|3149130_3150480_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|376582
NC_010296.1|WP_002747316.1|3154170_3154350_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266342.1|3141870_3142911_+|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl|CDD|273211
NC_010296.1|WP_125730587.1|3144106_3145158_-|ISKra4-like-element-ISMae18-family-transposase	unknown	unknown	gnl|CDD|284250
NC_010296.1|WP_012266337.1|3138373_3138709_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl|CDD|367091
NC_010296.1|WP_158303529.1|3151025_3151226_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002790889.1|3152459_3152795_-|DUF5615-family-PIN-like-protein	unknown	unknown	gnl|CDD|375906
NC_010296.1|WP_012266348.1|3146824_3147091_-|hypothetical-protein	unknown	unknown	gnl|CDD|379241
NC_010296.1|WP_002790887.1|3152778_3153102_-|DUF433-domain-containing-protein	unknown	unknown	gnl|CDD|225291
NC_010296.1|WP_002734321.1|3136638_3136884_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804141.1|3140534_3141572_-|fatty-acid-desaturase	unknown	unknown	gnl|CDD|215275
NC_010296.1|WP_012266354.1|3152197_3152389_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_080506995.1|3153605_3154100_+|hypothetical-protein	unknown	unknown	gnl|CDD|225269
NC_010296.1|WP_012266353.1|3151164_3152157_+|50S-ribosome-binding-GTPase	unknown	unknown	gnl|CDD|226124
NC_010296.1|WP_002735373.1|3154991_3155240_+|DUF433-domain-containing-protein	unknown	unknown	gnl|CDD|225291
NC_010296.1|WP_002736878.1|3153372_3153612_+|UPF0175-family-protein	unknown	unknown	gnl|CDD|377095
NC_010296.1|WP_012266339.1|3139443_3139707_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266336.1|3138118_3138373_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266335.1|3137230_3137953_+|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NC_010296.1|WP_012266338.1|3138975_3139443_-|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl|CDD|350222

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012266352.1|3149130_3150480_-|AAA-family-ATPase	gnl|CDD|376582	pfam01637, ATPase_2, ATPase domain predominantly from Archaea. This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.	0.00836188
NC_010296.1|WP_012266353.1|3151164_3152157_+|50S-ribosome-binding-GTPase	gnl|CDD|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	6.58605e-24
NC_010296.1|WP_125730587.1|3144106_3145158_-|ISKra4-like-element-ISMae18-family-transposase	gnl|CDD|284250	pfam06782, UPF0236, Uncharacterized protein family (UPF0236).	0.000699573
NC_010296.1|WP_012266337.1|3138373_3138709_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl|CDD|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	3.88886e-31
NC_010296.1|WP_002790887.1|3152778_3153102_-|DUF433-domain-containing-protein	gnl|CDD|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	4.47598e-22
NC_010296.1|WP_002790889.1|3152459_3152795_-|DUF5615-family-PIN-like-protein	gnl|CDD|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	6.85048e-17
NC_010296.1|WP_012266348.1|3146824_3147091_-|hypothetical-protein	gnl|CDD|379241	pfam13529, Peptidase_C39_2, Peptidase_C39 like family.	0.00369383
NC_010296.1|WP_012266342.1|3141870_3142911_+|DNA-(cytosine-5-)-methyltransferase	gnl|CDD|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	6.62963e-80
NC_010296.1|WP_041804141.1|3140534_3141572_-|fatty-acid-desaturase	gnl|CDD|215275	PLN02498, PLN02498, omega-3 fatty acid desaturase.	3.86429e-130
NC_010296.1|WP_080506995.1|3153605_3154100_+|hypothetical-protein	gnl|CDD|225269	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	8.1036e-14
NC_010296.1|WP_002735373.1|3154991_3155240_+|DUF433-domain-containing-protein	gnl|CDD|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	7.9119e-25
NC_010296.1|WP_002736878.1|3153372_3153612_+|UPF0175-family-protein	gnl|CDD|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	0.00766017
NC_010296.1|WP_012266338.1|3138975_3139443_-|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl|CDD|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.66496e-39

Protein sequences

>NC_010296.1|WP_012266348.1|3146824_3147091_-|hypothetical-protein
MTDRDTPFVEDLVEAGFPVVVNILHKGPITNPSGGHIIMLIDQKAEDWIAHDPWGTLTSQYKEHKGEYSRISKQEFNARWQGGYRILA
>NC_010296.1|WP_125730587.1|3144106_3145158_-|ISKra4-like-element-ISMae18-family-transposase
MNTDQKEQLDQHLKAIAQILVDNTPEEQLRSFEGIETALRDHWLTTLGPAIGKFFFESATGTQAGRTKSVSSIIGKVKISEKQADKLGLSKNNRLSPMLEKCCLGAVAKVSFEDAEKAIKMATGMAVSGSSQQRLVQRYKFEEAEAKSPVEALSVEVGKVRIRTPKGQPSQGRDYKAVSLHGQECAGFFQQNEELLEWVNRQPLTEVVTCLGDGHDGVWNLMEKIGVKRREILDWYHLVENMKKIGGSNKRLNRIKENLWKGEVKRVLEELEGCKKKQAINFTKYVDKHRERIPNYELYQSQGICIGSGSVESKIKQIGARMKIVGAQWKAENVPQYLKLRCAYLNGDIA
>NC_010296.1|WP_012266342.1|3141870_3142911_+|DNA-(cytosine-5-)-methyltransferase
MNELPIRPANKNFTHSRLTFADFYAGIGGFRLGLEQIGWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIPSLLPDFEVFCGGFPCQPFSRAGQQKGWQDSRGLAIQEIIRICHEKKPKVIFLENVSNIVRLNQGQILKDILIQLKEINYLAFYAVIDSKYFQIPQSRPRFFLLAFRKDLGIKNFQFPQHCHAEVGIEKIIVPGDYSIPISGKWQQYIDYYAGRINAEQLSFQMPKTRISIERASVNVDYDNCIYQMRSSGIRAISIQKPFPTFAVSVSGGGAMIPVYSKERRHLSLLEIKRLMGFPDDYYFPVSRTAAIKQLSNAVCPPVIKHIGINITKSLN
>NC_010296.1|WP_041804141.1|3140534_3141572_-|fatty-acid-desaturase
MSQTLPKPSLKREFLPFTLQDVRLAIPARCFQSSVFRSLAYFFFDIGIITLLYWITYQINQAWFFPLFWFMQGTMFWALFVVGHDCGHGSFSRYRWLNNLIGHLSHTPILVPFHGWRISHRTHHANTGNIDTDESWYPVTETQYNNMAWYEKLARFQLILFVYPLYLFRRSPNKQGSHFMPESPLFRPSERWQVLTSTFCCTFMLGLLIGVGISQGFWFLFNYYIMPYIVFVVWLDLVTFLHHTEDDIPWYRGQDWYFLKGALSTIDRDYGIFNPIHHQIGTHVAHHIFITIPHYHLQEATEAIRPVLGDYYRVSKEPIFKSLWLSYRNCHFVSDQGSKIFYRKN
>NC_010296.1|WP_012266339.1|3139443_3139707_-|hypothetical-protein
MTQAILTQILNQLETLELKELQLLNQTIQQHLMDKEEAEKQAVFHQSLLDAGLVKQIKRPSSQPITERRLIEIEGKPISETIIEERR
>NC_010296.1|WP_012266338.1|3138975_3139443_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MALYFLDSSALVKRYISETGSAWVLGLFAAALNNEIFIAAIAKVEIVAAITRRSRTGSISVTDATAIVHQLRKDSLKDYQVIEITESIINSGMVLAETYGLRGYDAIQLAVGCAVNTLCLASGLPSITFVSADNELNVAVISEGLLMENPNNHPS
>NC_010296.1|WP_012266337.1|3138373_3138709_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MRGDIYLADLNPSRGSEQAGIRPVIIVQHNNIDRFTSTVVVIPLTSNLRRAQIPGTMVIPAGQGGLNQESVALCYQIVVIDKQRLQRQLGTLSSSYLQQLEDATRYTLDLT
>NC_010296.1|WP_012266336.1|3138118_3138373_+|hypothetical-protein
MSVTHINNLQDQILQSIKTLPLEKQQQVLEFVKSLQRNSRFQKWDNISDAEAQSLQNEFAQEDISFSESILPDYLSHLKQEDKE
>NC_010296.1|WP_012266335.1|3137230_3137953_+|PEP-CTERM-sorting-domain-containing-protein
MVFIKLVKNSIGGAVLISLATIGTANALQITPISYDMENGGGGLFKYWDKKYNGTGNTSLDYAPLSGGVGDLTDGIIPTQNWNVVENAEGTGPYVGWENRNPVITFNFAGTVKLNSVTVHVDDSNGNGGVSVPQSILLSMGSSNYNSGTLTDPPSAAPTSYTFSGLNFSGSSLQLTLNRRTAWVLASEVTFDGELLGVQPVPEPTSTLGFLALGTIGAASTLKRKLKSSKPSEKETTKVG
>NC_010296.1|WP_002734321.1|3136638_3136884_-|hypothetical-protein
MTTYYEILSQIENLPLTDKLRLLEDLKTIIKPTVAPKDDDEIIPAEELAESQAAWQDYLSGRDTGITSTELKYKLFGDKLG
>NC_010296.1|WP_012266352.1|3149130_3150480_-|AAA-family-ATPase
MNITEVLQLIDERLIERDKKPLNTIQKAIFEGSWQGQSYQEIGNEYHRSETHIREEGAKLWKLLSEVLEKDIKKSTSRSVLERVYIKSLKNSNIYSINGNNNNLCPTENTRLSNENDLNSNNNSQSESKYHDLTLAPQIIDFYDRENELATVSNWVFKQNTRLIAVLGLWGIGKTTLVKRFIDLNLEQFEVVIWKSLKFPKSLDLWLNDLLNTCQKEPKESTDNKIQQLLEVLSNHKCLIVLDDFQNLFAVGQMAGNYQPEYSSYQHFLKLIAEIQHQSHFILISQEKSAEMNYLNQESSPIQCLELSGFEAINFLENKGLQDEERWLELIQLYEGNPFYLTDIAVLIKDVFDGKVNDFLAENSLVITKKMQSHLKQIFGRCSPLAQQIALELSKVNQPLSREELKNNLDLSASDLINGLQSLQQRYLIQREQNRFQLSSIFKAYIKSD
>NC_010296.1|WP_158303529.1|3151025_3151226_+|hypothetical-protein
MLIVFDLERTNQLSLLPDKDLADLCHPIKPYQVTKNLFFVLNFYQYYVIPAIKHIFRPRKRNQGTH
>NC_010296.1|WP_012266353.1|3151164_3152157_+|50S-ribosome-binding-GTPase
MSFQQSNISSAQEKEIRERIDAERNKPLVVVVMGQTGVGKSSLINALFGTKLKTNDVQPETKSPEKHIEKGSDHSELWFWDMPGIGESSSADSGYLNDYRQKILEADVALWLCHADSRSVTFDVEAIHKILEGLTDGEKSLILSKLTFVLSKADLITPEPWILYRSGNEVVFDTTEKTEKLLNAKAAYFKEALLTPHSKNFVSKTFHDGTFQLRLSHLTYDKNFTYYSGIMTVSHLRKLQEEYPNYSDVFKRLYHNSEVIYCSSRFKYNLAKLMQVIVDKIGGGVSIRFRKFISENSMNRVSWDKARTFSNLVVFDSIKDEITFDLSKVK
>NC_010296.1|WP_012266354.1|3152197_3152389_+|hypothetical-protein
MDKEEIKRRINRRIDNDDQYAANISAALDAGDEAWLLTLIIEVIGVIIEIGSSIFNWIKRQFS
>NC_010296.1|WP_002790889.1|3152459_3152795_-|DUF5615-family-PIN-like-protein
MPVKIKFHLDESVSNAIANGLRMRGVDVTTSPEEGLIGASDERQLAYALSQQRVIFTFDDDFLSLASTGIEHCGIIYTRQQRQPIGKIISDLVLIWECLEPQYMYKKIEFL
>NC_010296.1|WP_002790887.1|3152778_3153102_-|DUF433-domain-containing-protein
MSSLVISQHIEITSGICGGKPRIAGHRIKVQDIVIWHERMGMSPDEIIYHHPTITLADVYAALTYYHDNREEIRRQIEAGETFAKQLQGNKPSLIEKILQGENASQD
>NC_010296.1|WP_002736878.1|3153372_3153612_+|UPF0175-family-protein
MNTSTTFQEIAAEIQLFDNIEQKEQFIFVVGALVSRIISLHKAAEIMEMDTEMFLKILELMGIDFSYLTTEDIDREKKW
>NC_010296.1|WP_080506995.1|3153605_3154100_+|hypothetical-protein
MVISMKIVFNSSPLIFFSQLGFLEKSLDSNDNFYLPATVQQEINAKQDQSSETLNKLINQQKLIILNIKLISLANSLNERLGKGESDAITLGIELQTDYIILDDFAARKEALHLGLNAKGTLAIIRKLLKEGKIEIENLESFYQRLREINFRVKREIFESIFGD
>NC_010296.1|WP_002747316.1|3154170_3154350_-|hypothetical-protein
MKPTTIKKSFDCLAFKQTSQEKMAEDMKNLSYSDQIEYLQKKINESDLKLWWESINNKK
>NC_010296.1|WP_002735373.1|3154991_3155240_+|DUF433-domain-containing-protein
MSFAAKYRDRIVINPDIRSGKPCIVNTRIAVADIFDYLGGGMTIEEILDDFPDLTLEDIQACFAFAAERDRRLMVIPYETAI

Crispr_ID: NC_010296_25

• CRISPR_ID: NC_010296_25
• CRISPR_location: 3168657-3168819
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_25

Consensus_repeat	Method
AACTGTGGTTTGGATATACCCAAGCTACAAGCTTTGTTGGAAGAAATCGAAC	CRISPRCasFinder

spacers of NC_010296_25

>25.1|3168709|59|NC_010296|CRISPRCasFinder
CCCCATCTGAAAAATACAAAATGCCCCCGTCACTATGCGATGCCCAAAAGCAGGCAAGA

CRISPR arrays and Neighbor proteins around NC_010296_25

CRISPR arrays

The CRISPR arrays of NC_010296_25

>merge|NC_010296|25|3168657-3168819|CRISPRCasFinder
AACTGTGGTTTGGATATACCCAAGCTACAAGCTTTGTTGGAAGAAATCGAACCCCCATCTGAAAAATACAAAATGCCCCCGTCACTATGCGATGCCCAAAAGCAGGCAAGAAACTGTGGTTTGGATATACCCAAGCTACAAGCTTTGTTGGCAGAAATCGAAC

>NC_010296|25|23|3168657-3168819|CRISPRCasFinder
AACTGTGGTTTGGATATACCCAAGCTACAAGCTTTGTTGGAAGAAATCGAAC	CCCCATCTGAAAAATACAAAATGCCCCCGTCACTATGCGATGCCCAAAAGCAGGCAAGA
AACTGTGGTTTGGATATACCCAAGCTACAAGCTTTGTTGGCAGAAATCGAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012266366.1|3166430_3167021_-|RES-family-NAD+-phosphorylase	unknown	unknown	gnl|CDD|378053
NC_010296.1|WP_012266358.1|3156761_3159182_-|phosphoketolase-family-protein	unknown	unknown	gnl|CDD|235379
NC_010296.1|WP_012266362.1|3162936_3164595_-|NAD+-synthase	unknown	unknown	gnl|CDD|237577
NC_010296.1|WP_012266361.1|3161634_3162648_+|folate-binding-protein-YgfZ	unknown	unknown	gnl|CDD|223431
NC_010296.1|WP_002750132.1|3172756_3173011_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804146.1|3178281_3179043_+|DUF3887-domain-containing-protein	unknown	unknown	gnl|CDD|379023
NC_010296.1|WP_012266360.1|3160059_3161094_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NC_010296.1|WP_012266364.1|3165332_3165899_-|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|234611
NC_010296.1|WP_008200332.1|3161269_3161638_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012266363.1|3164607_3165336_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|223979
NC_010296.1|WP_012266375.1|3173007_3174714_-|NAD-binding-protein	unknown	unknown	gnl|CDD|224147
NC_010296.1|WP_080506996.1|3180592_3180955_-|phage-holin-family-protein	unknown	unknown	gnl|CDD|377198
NC_010296.1|WP_041804145.1|3174864_3175809_+|DUF4351-domain-containing-protein	unknown	unknown	gnl|CDD|316753
NC_010296.1|WP_162467763.1|3180946_3181099_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002757327.1|3172027_3172639_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_012266377.1|3176087_3178166_+|glycogen-debranching-protein-GlgX	unknown	unknown	gnl|CDD|224440
NC_010296.1|WP_012266367.1|3167020_3167461_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804804.1|3167518_3167758_-|DUF1830-domain-containing-protein	unknown	unknown	gnl|CDD|370162
NC_010296.1|WP_012266379.1|3179089_3180388_+|phosphopyruvate-hydratase	unknown	unknown	gnl|CDD|234617
NC_010296.1|WP_041804808.1|3171581_3171707_-|type-II-toxin-antitoxin-system-YoeB-family-toxin	unknown	unknown	gnl|CDD|284238

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012266366.1|3166430_3167021_-|RES-family-NAD+-phosphorylase	gnl|CDD|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	2.18847e-10
NC_010296.1|WP_012266358.1|3156761_3159182_-|phosphoketolase-family-protein	gnl|CDD|235379	PRK05261, PRK05261, phosphoketolase.	0
NC_010296.1|WP_012266361.1|3161634_3162648_+|folate-binding-protein-YgfZ	gnl|CDD|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	3.52047e-57
NC_010296.1|WP_041804146.1|3178281_3179043_+|DUF3887-domain-containing-protein	gnl|CDD|379023	pfam13026, DUF3887, Protein of unknown function (DUF3887). This domain family is found in bacteria and archaea, and is approximately 90 amino acids in length.	2.4295e-09
NC_010296.1|WP_012266360.1|3160059_3161094_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NC_010296.1|WP_012266364.1|3165332_3165899_-|nicotinate-nucleotide-adenylyltransferase	gnl|CDD|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	4.87866e-61
NC_010296.1|WP_012266362.1|3162936_3164595_-|NAD+-synthase	gnl|CDD|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_010296.1|WP_012266363.1|3164607_3165336_-|NUDIX-hydrolase	gnl|CDD|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.04866e-23
NC_010296.1|WP_012266375.1|3173007_3174714_-|NAD-binding-protein	gnl|CDD|224147	COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism].	8.73324e-23
NC_010296.1|WP_080506996.1|3180592_3180955_-|phage-holin-family-protein	gnl|CDD|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	2.49933e-22
NC_010296.1|WP_041804145.1|3174864_3175809_+|DUF4351-domain-containing-protein	gnl|CDD|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	1.32374e-22
NC_010296.1|WP_002757327.1|3172027_3172639_+|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.30927e-33
NC_010296.1|WP_012266377.1|3176087_3178166_+|glycogen-debranching-protein-GlgX	gnl|CDD|224440	COG1523, PulA, Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism].	0
NC_010296.1|WP_041804804.1|3167518_3167758_-|DUF1830-domain-containing-protein	gnl|CDD|370162	pfam08865, DUF1830, Domain of unknown function (DUF1830). This family of short proteins is functionally uncharacterized.	2.12939e-23
NC_010296.1|WP_012266379.1|3179089_3180388_+|phosphopyruvate-hydratase	gnl|CDD|234617	PRK00077, eno, enolase; Provisional.	0
NC_010296.1|WP_041804808.1|3171581_3171707_-|type-II-toxin-antitoxin-system-YoeB-family-toxin	gnl|CDD|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	2.13491e-05

Protein sequences

>NC_010296.1|WP_041804804.1|3167518_3167758_-|DUF1830-domain-containing-protein
MSNATVNQAIINCVYVNNTGKMAILRNNVDLIAKWREVVVEPGEEFCFQAPEGGHLDIFTYEMAAMILEHRIPCRELAI
>NC_010296.1|WP_012266367.1|3167020_3167461_-|hypothetical-protein
MLESIQKTQSPLALAPALEAAIKRGEEAKKRFLSKQGGTLTSAEVCSVLACSSLELETMRLNHQILGLSVNEELVYPAWQFIDGKVLSGLDQVLAVLKEDGAWTQMIFLLTGDIRLEGATPLEKLQKGEIEPVVLAAKCYGSHSAA
>NC_010296.1|WP_012266366.1|3166430_3167021_-|RES-family-NAD+-phosphorylase
MGLPPFPLPPDDFSQRQLPVIETPGPWLRLNKTGHLSSLHFDRSGSGRFDGPNQGYGLLYVGDEYSTFIECFGRTFDGAVTVTALRNRNLFRIRSDRTLVLADLTGPALVRIGIDARISSGDYEYCRTWGQAIWEHPQGVDGIRYRSRHDDSVYSVGLFDRVRNHLQEDNLGNLYDDNSSCLGEILEHYDYALIQE
>NC_010296.1|WP_012266364.1|3165332_3165899_-|nicotinate-nucleotide-adenylyltransferase
MLKIALFGTSADPPTAGHQAILKWLSEQYDIVAVWAADNPFKNHQTSLEHRLRMLNLLIRDIQPPRDNIQLRRELSDRRSLISVEKARAIWGEQEEYTLVIGSDLAGQIRHWYRSQELLEKVKILVIPRPGYPINQDDIEQLQTLGGDCLIADVFAPAVSSTDYREKGDKQAVPAPIKDYIEGQKLYA
>NC_010296.1|WP_012266363.1|3164607_3165336_-|NUDIX-hydrolase
MKPQKTLANKSLADFKVGVDNVIFSVDTQLNRLLVLLIKRREEPFSNYWSLPGTLVRNGESLETAAYRILAEKISVNNLYLEQLYTFGGPEGDSPAAAESFGKRYLSVSYFALVRFEEAKLITEQDHNITWYMIDKVPDLAFNHGQILEYGWRRLRNKVEYSPVAFEVLPELFTLNDLYQFYETILGKNFSDYSNFRNRLLKLGFLKDMGLKVSRGAGRPASLYRFDEKAFAPFKEQPLVFV
>NC_010296.1|WP_012266362.1|3162936_3164595_-|NAD+-synthase
MRIAIAQLNPIVGDIEGNAQRILEAAQTAFNQGAELLLTPELSLCGYPPRDLLLNLGFVEKMSRQLQLLSQQLPEKLAVLVGFVEKNPSATVRGEKPLFNSIALLKSQEIKQIFTKRLLPTYDVFDEDRYFASGKESQYFQLTENNVKIGVTICEDVWNDEQFWGQRQYAVNPIADLANLGVDLIVNLSASPYSVGKQKLRESLLSHSATRYNLPIVYVNQVGGNDDLIFDGDSVAFNRQGEVIYRAQAFTSSLELIEFNQDLLPAVIHPLPVDEDEEIYRALVLGVRDYVQKCGFKRVIFGLSGGIDSSLVAAIASDALGKENVLAVMMPSPYSSDHSISDAVALVNNLGIKSEKLAIQEIMTAYDQLLEPVFAGTDFGIAEENLQSRIRGNLLMALSNKFGHLLLSTGNKSEMAVGYCTLYGDMNGGLAVIADVPKTRVYSLCRWLNRHGEIIPLNVINKAPSAELKPNQKDQDSLPPYEILDAILALLIDRHQSAEQIIAAGFEPEIVQKVIKLVKNAEFKRKQAPPGLKISDRAFGTGWRMPIASRWG
>NC_010296.1|WP_012266361.1|3161634_3162648_+|folate-binding-protein-YgfZ
MKADLETIKAEYAANFLKDYSNDPQSLASQTILIDRSDWGLLELKGQDRLRFLHNQTSNAIDRLKPGQGCETIFLNSTGRTLDFVTVYASDDSLLILVSPQRRQFLLELIDRYIFPFDKVEISDLTDNFAIFTLIGTESGQYLQKIAIPEQILTGVQHSHYLLSDPPLRVAVGTGLDLPGYTLIVAAAEAGPLWENLIKNGVTPADEQVWEYLRIHQGRPAVDRELTEDYNPLEAGLWRAIVFDKGCYIGQETIARLNTYKGVKQRLWGIKLSQPVPSNTPIILEAQKVGLLTSVLEDFGLGYVKTKAGGEGLKVQIGEATGELIPLPFLSHEYPFQ
>NC_010296.1|WP_008200332.1|3161269_3161638_+|hypothetical-protein
MNPKFKDITAWEQAQLLMQPAFIRVLDNLRKQLENSLWKGTYTEIQDPYPSYLLCLTYLDRSVTVNIWELCFQVCFLDYPTDEGESVTIDTSLLDPTGELDWQSLETKTERIINRLFANLPQ
>NC_010296.1|WP_012266360.1|3160059_3161094_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTKVRVAINGFGRIGRLVFRAGIQNPDFEFVGINDLVPSDNIAYLLKYDSTHGRFQGTVEAKEDGIVVDGKFIPCYSIKDPAQLPWGATGADYVVESTGLFTTAEGAGKHLEAGAKRVVISAPTKDPEKIRTIVLGVNDNEYDPAKDLIVSNASCTTNCLAPITKVINDNFGLAEGLMTTVHSMTATQPTVDGPSKKDWRGGRGAGQNIIPSSTGAAKAVTLVIPSLKGKLTGMAFRVPTPNVSAVDLTFKTEKATSYEEICAAMKAASEGPMKGILGYTDEEVVSSDFITDPHSSIFDAKAGIQLNANFFKVVSWYDNEWGYSCRMLDLMKMMAAKEAALVTA
>NC_010296.1|WP_012266358.1|3156761_3159182_-|phosphoketolase-family-protein
MVFTPERPLTEQNPLSQDELYKTHAYWRACNYLAVGMIYLRDNPLLKEHLKPEHVKYRLLGHWGASPALSFTYVHLNRLIKKYDLDMIFMAGPGHGAPGVLGPVYLEGTYSEIYPDKSEDEEGLQKFFKQFSFPGHIGSHVTPETPGSIHEGGELGYSVSHAYGSVFDNPDLITAVVVGDGEAETGPLATAWHSNKFLNPIRDGAVLPILNLNGYKIANPTILSRISTHELESLFVGYGYTPYIVECKEDEDLMHCHQKMAATLEHCINQIRSYQQEARSTGVAKRYPWPMIILRSPKGWTGPKNVDGHKVEGFWRAHQVPMGAMQENPEHLRKLEEWMKSYNPEELFDYTTGKFKPEFKELAPRGHRRMSANPHANGGLLRKDLKMPDFRQYAVDVTHPGQVEAENTGVMGVFLRDVMRNNMTNFRVFGPDETASNRLAALYEVTKKAWLADTYPEDLDGSQLSPDGRVMEMLSEHTLVGWLEGYLLSGRHGLFHSYEAFAHVIDSMFNQHAKWLDICKNHVPWRASVSSWNLLLSSVVWRQDHNGFSHQDPGFIDLVTNKSADVVRVYLPPDGNCLLSVANHCLKSKDYTNIIVADKQKHLQYLTIEEAIKHCTKGIGIWDWASNDDDGTNPDEPDVIMACCGDIITKESLAATAILREEFPYLKVRFINVVDLFKLQSESEHPHGLSERDFDSLFTTDKPIIFNFHGYPWLIHKLTYRRSNQERIHVRGYKEEGNINTPLELAIRNQVDRFHLVIDVIDRVPKLGSAAGHVKERMKNAIIDNLDYAFTNGIDKDEITNWKWPY
>NC_010296.1|WP_041804808.1|3171581_3171707_-|type-II-toxin-antitoxin-system-YoeB-family-toxin
MAKSLEFDRLAFEDLAWWVEDDRKQTLKIIRLIQKVQRHPF
>NC_010296.1|WP_002757327.1|3172027_3172639_+|Uma2-family-endonuclease
MIIAQEKPTIATVTKTPVTLEAYRAIAETSQERYEYCHGEMILMPGGTATHSAIAINISVFLGFLLRDRDFRLYNSDLRVWIPEYHCGTYTDLMVVNHEPEFNGDRKDEILNPLFIVEVLSPATEADDRGDKFRKYRSLPSFCEYLLVSQTEPYIEQYFRLAQSDRWQLQTYDQLSQIIPLESLNVELPLLEIYRRVSFAAAS
>NC_010296.1|WP_002750132.1|3172756_3173011_-|hypothetical-protein
MISGLNYLSKASYRCILSLGSAGSILSLASASSILSLVSIGSMLSIGSVGSILSIGSVGSILSVGSVGSIFGIFQYHSLPNYPE
>NC_010296.1|WP_012266375.1|3173007_3174714_-|NAD-binding-protein
MKPQIIVCGLGRTGYKIFCLLKQQSAAVVAISDRQMVCEYQSDIIIGDPCSPKTLLQAGLPDAETLVLAIDNDALNLEILTRARIINPKIRIVNRLFNETLGERLDQTLPAHVSMSVASLAAPIFSFAALGNKAIGQLQLFDRLWPIQEIIIEENHPWWGLPLYELWDDPARMLIYYLPAHDEIDLVSAVLSGKKLQTGDHLIIGNKPTIKAKQRFKLQKWLRNLLNLRPYQHYVQPVILVTLSLLGMISLATVTYLSVNQKISLVDSLYFSVGMITGAGGNEKVAESTPDSIKIFTVVMMIVGAGVIGICYALLNDFILGSRFKQFWDATRIPVRNHHIICGLGGIGTRIVRQLHDQGCEVVVIESDPNNRFLHSVRSWGIPVIIEDARLVATLETANINNAESLIVVTYEDMINVEIALTAKAIAPKINLVLRCSQEQFGRSIQEVFDFDTVLCPRDLATYSFAAAALGGRILGNGMTDDLLWVALATLITPNHPFMGQIVKEAAMNADFVPLYLEKQGQTIHGWQLLEITLDQGDILYLTMPAMRLQQVWQNTSLTIPQSFPDLK
>NC_010296.1|WP_041804145.1|3174864_3175809_+|DUF4351-domain-containing-protein
MTRFLWDKFSKDYLETFLSSSGDVKTSLNVTAETQEIDVYFRPTSPKIPPELGLLGRLAQTPCLLEPYRNPVTIEGIIACLSKLLTVREQLQREAHRHQQPLLAENIPRLWILTPTASQRIITAFSALNHPDWGEGIYFLPPALTTSLIVLHQLPETPETLWLRLLGRGGTRTRAIDELEALSSNHPFKSASLKLLYNLSRNLQALPKRTQEERKFIMRLAPLYEQDREKAIQQGEAIGLQKGRIEGIQEGEAIGLQKGEANLVLRLLNRRFGELPPHITETIQKLAVEQLEDLGEALLDFETQADLINWLNQN
>NC_010296.1|WP_012266377.1|3176087_3178166_+|glycogen-debranching-protein-GlgX
MTLETDHGKSHPVGATVLADGVNFSLFSKYATAIELLLFDDANSPVPSRTILLTPQTNRTFFYWHIFVHGIGAGQVYAYRVYGPDNPAQGHRFDPDKVVLDPYAKAIVGAEIYDRQAASEKGDNCHRALRGLVVDTGRYDWEDDKPLRTPYSASFIYEMHVGGFTRNPNSGVSEEKRGTFAGLIEKIPYLKNLGITAVELLPIHYFDPASAMPGLTNYWGYSTISFFAPHAGYSSDRSPLGPLNEFRDLVKALHKAGIEVILDVVFNHTAEGDEIGPTLSFKGIDNRTYYILDAEDKSLYSNYTGCGNTLKGSHPIVGKMILDCLRYWVSEMHVDGFRFDLAAVLSRNVDGEPILQKGYNMIWAIESDPVLAGTKLIAEAWDAAGLYSVGQFVEFADWFSEWNGPFRDDVRAFVRGDTSIVTKLAARILGSPDIYHRPDTDVNRSINFVTCHDGFTLNDLVSYDGKHNEANGEENRDGCNDNFSWNCGVEGETNNEAIKTLRLQQIKNLLTILFISQGTPMLLMGDEVRRTQKGNNNAYCQDNQLSWFDWSAVEQEFDLWCFVRRLIDFNKKLALFRQEKLLEVTYTSLEPHLSWHGVQLSKPDWSEDSRSLAFSLRHPKANEYLHIMLNAYWESLNFQLPPLFPEEKWHRVIDTAGQLSEAACDLDAAVAIESETYRVQARSAVVLIVKPV
>NC_010296.1|WP_041804146.1|3178281_3179043_+|DUF3887-domain-containing-protein
MMRLSLAKRLSILSLCLMGFSLPWTAFSVSPVQANIEPNAIALGDPVREEKQARQLVEWLGTKQYGKVIAALSPQLKPLWTAEKLQKVWESQVTDNTGPFKRIVKSKLLDAINANLVIVTVEFEKLTEDVVITFNRSGQVIAADFPEFRSISEIGAAFVTSLVNKDYGLARGFLHPFLKAEVFPTRVQGAWENLLKRTGPVRRIVGTQVRKGADTDGVALVLVTIQFEKLTDTLILVFDDQKQIVNVDFPLGN
>NC_010296.1|WP_012266379.1|3179089_3180388_+|phosphopyruvate-hydratase
MLDKIEVPIEAIAAREILDSRGRPTIEAEVLLESGALGLAQVPSGASTGSFEAHELRDDDPQRYGGKGVLKAVRNVHEKIVPVLEGMNAFDQASIDLAMIDRDGTANKRELGANAILAVSLATAKAAAADLGLPLYRYLGGPMANVLPVPMMNVINGGSHADNNVDFQEFMIFPIGADSFKEGLRWGAEVFAALGKALHERKLLTGVGDEGGYAPNLASNQEALDILIESIERAGYKPGSQVALAMDVAASEFYRDGQYIYDGSAHSPAEMVDFLASLVERYPIISIEDGLHEEDWDNWKLLTDKLGARIQLVGDDLMVTNPIRLQKAIDLGIANSILIKLNQIGSLTETLQTIALATRHGYRSVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNRLLRIEEELGDRAVYAPKVGLGPKFLA
>NC_010296.1|WP_080506996.1|3180592_3180955_-|phage-holin-family-protein
MPQTLNILATALSLLVVDIIFPGVKVDSFIVAMVAGAVIGLVNGLVKPILGLLSLPITILTLGGFILVLNSFCFWLASILVPGFAVKGLVAFIGAPIVLSLVNTLLNKYFAEKGSSEVPQ
>NC_010296.1|WP_162467763.1|3180946_3181099_+|hypothetical-protein
MRQKAFRWWQGVGCGVWGVGFYRFSGGQLPNFQGKSPGIFPPIPAMAGTF

Crispr_ID: NC_010296_26

• CRISPR_ID: NC_010296_26
• CRISPR_location: 4229997-4230132
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_26

Consensus_repeat	Method
AATCATCTGTAGGGTGGGTTAGGCAAAAATAAGTTATACTCTGACT	CRISPRCasFinder

spacers of NC_010296_26

>26.1|4230043|44|NC_010296|CRISPRCasFinder
GAAAATTGAGTATTCGCCGTAACCCACCAGATCAGCACATAGGT

CRISPR arrays and Neighbor proteins around NC_010296_26

CRISPR arrays

The CRISPR arrays of NC_010296_26

>merge|NC_010296|26|4229997-4230132|CRISPRCasFinder
AATCATCTGTAGGGTGGGTTAGGCAAAAATAAGTTATACTCTGACTGAAAATTGAGTATTCGCCGTAACCCACCAGATCAGCACATAGGTAATCATCTGTAGGGTGGGTTAGGCGAAAATAAGTTATACTCTGACT

>NC_010296|26|24|4229997-4230132|CRISPRCasFinder
AATCATCTGTAGGGTGGGTTAGGCAAAAATAAGTTATACTCTGACT	GAAAATTGAGTATTCGCCGTAACCCACCAGATCAGCACATAGGT
AATCATCTGTAGGGTGGGTTAGGCGAAAATAAGTTATACTCTGACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_004162611.1|4230459_4230891_+|CAAD-domain-containing-protein	unknown	unknown	gnl|CDD|372936
NC_010296.1|WP_012267175.1|4236175_4237801_+|chaperonin-GroEL	unknown	unknown	gnl|CDD|234573
NC_010296.1|WP_012267174.1|4234275_4234893_+|CBS-domain-containing-protein	unknown	unknown	gnl|CDD|341393
NC_010296.1|WP_012267167.1|4226096_4227347_-|methionine-adenosyltransferase	unknown	unknown	gnl|CDD|235374
NC_010296.1|WP_012267173.1|4233898_4234225_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267166.1|4223632_4225507_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224048
NC_010296.1|WP_012267177.1|4239932_4241846_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276937
NC_010296.1|WP_002763751.1|4233494_4233818_+|thioredoxin	unknown	unknown	gnl|CDD|239245
NC_010296.1|WP_004162618.1|4221425_4221959_-|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl|CDD|235365
NC_010296.1|WP_012267168.1|4227672_4229994_+|DNA-helicase-PcrA	unknown	unknown	gnl|CDD|273429
NC_010296.1|WP_004162626.1|4216532_4217150_-|DedA-family-protein	unknown	unknown	gnl|CDD|223659
NC_010296.1|WP_012267172.1|4232699_4233155_-|recombinase-family-protein	unknown	unknown	gnl|CDD|377856
NC_010296.1|WP_002737272.1|4235817_4236129_+|co-chaperone-GroES	unknown	unknown	gnl|CDD|178988
NC_010296.1|WP_041804233.1|4231303_4232476_-|CBS-domain-containing-protein	unknown	unknown	gnl|CDD|341410
NC_010296.1|WP_012267161.1|4217219_4217759_+|pentapeptide-repeat-containing-protein	unknown	unknown	gnl|CDD|224276
NC_010296.1|WP_012267165.1|4222103_4223501_+|amidase	unknown	unknown	gnl|CDD|223232
NC_010296.1|WP_012267164.1|4220317_4221100_+|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl|CDD|197317
NC_010296.1|WP_158303546.1|4220163_4220304_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267176.1|4238132_4239629_+|IS5-like-element-ISMae6-family-transposase	unknown	unknown	gnl|CDD|290319
NC_010296.1|WP_012267163.1|4218283_4219900_+|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173884

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_004162611.1|4230459_4230891_+|CAAD-domain-containing-protein	gnl|CDD|372936	pfam14159, CAAD, CAAD domains of cyanobacterial aminoacyl-tRNA synthetase. This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.	7.65245e-41
NC_010296.1|WP_012267175.1|4236175_4237801_+|chaperonin-GroEL	gnl|CDD|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_010296.1|WP_012267174.1|4234275_4234893_+|CBS-domain-containing-protein	gnl|CDD|341393	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	7.27554e-53
NC_010296.1|WP_012267167.1|4226096_4227347_-|methionine-adenosyltransferase	gnl|CDD|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NC_010296.1|WP_002737272.1|4235817_4236129_+|co-chaperone-GroES	gnl|CDD|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.78596e-48
NC_010296.1|WP_012267166.1|4223632_4225507_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_010296.1|WP_012267177.1|4239932_4241846_+|tetratricopeptide-repeat-protein	gnl|CDD|276937	cd15832, SNAP, Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family. Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.	5.42936e-08
NC_010296.1|WP_002763751.1|4233494_4233818_+|thioredoxin	gnl|CDD|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.54884e-32
NC_010296.1|WP_004162618.1|4221425_4221959_-|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl|CDD|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	8.5973e-97
NC_010296.1|WP_012267168.1|4227672_4229994_+|DNA-helicase-PcrA	gnl|CDD|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_010296.1|WP_004162626.1|4216532_4217150_-|DedA-family-protein	gnl|CDD|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.19614e-43
NC_010296.1|WP_012267172.1|4232699_4233155_-|recombinase-family-protein	gnl|CDD|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	3.17729e-07
NC_010296.1|WP_041804233.1|4231303_4232476_-|CBS-domain-containing-protein	gnl|CDD|341410	cd17774, CBS_two-component_sensor_histidine_kinase_repeat2, 2 tandem repeats of the CBS domain in the two-component sensor histidine kinase and related-proteins, repeat 2. This cd contains 2 tandem repeats of the CBS domain in the two-component sensor histidine kinase and related-proteins. Two-component regulation is the predominant form of signal recognition and response coupling mechanism used by bacteria to sense and respond to diverse environmental stresses and cues ranging from common environmental stimuli to host signals recognized by pathogens and bacterial cell-cell communication signals. The structures of both sensors and regulators are modular, and numerous variations in domain architecture and composition have evolved to tailor to specific needs in signal perception and signal transduction. The simplest histidine kinase sensors consists of only sensing and kinase domains. The more complex hybrid sensors contain an additional REC domain typical of two-component regulators and in some cases a C-terminal histidine phosphotransferase (HPT) domain. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.0856e-76
NC_010296.1|WP_012267161.1|4217219_4217759_+|pentapeptide-repeat-containing-protein	gnl|CDD|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.0454e-25
NC_010296.1|WP_012267165.1|4222103_4223501_+|amidase	gnl|CDD|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	8.09791e-127
NC_010296.1|WP_012267164.1|4220317_4221100_+|endonuclease/exonuclease/phosphatase-family-protein	gnl|CDD|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	8.69919e-91
NC_010296.1|WP_012267176.1|4238132_4239629_+|IS5-like-element-ISMae6-family-transposase	gnl|CDD|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.64282e-34
NC_010296.1|WP_012267163.1|4218283_4219900_+|peptide-ABC-transporter-substrate-binding-protein	gnl|CDD|173884	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0

Protein sequences

>NC_010296.1|WP_012267168.1|4227672_4229994_+|DNA-helicase-PcrA
MTVTADYLEQLNPSQRLAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTFTNKAAREMKTRIEKTFAQQKAQEKYGQRLELLEEYEQKKLFSQVYRHYTKKLWIGTFHSLCGRILRYDINKYQDEYGHSWQRNFSIMDESDAQSLVKNIVTKQMNLDDKKFDARNLRYAISNAKNLGLTPTDYARENPHFRGKVISEVYQAYQMQLAQNNALDFDDLILVPVRLFQQNESILGYWHTQFKHILVDEYQDTNRIQYELIRLLSTNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGDGLPDDDTRTMVKLQENYRSRENILQAANKLIEKNSQRIDKVLVPTREGGESIYVFKARDEQEEAAFVIDKIREFTQENPELTWGSFAILYRINAQSRPFEDGLIRNNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLLRIINTPRRGIGKTTIDNLLKAAQELGVPLWEIISDETSVNTLAGRATKSINKLAKIIQNLQEKITDLSASEILDQIMEDSGYIDELKQQGTEEADTRIENIQELYSAVVQFQEENEETNLQEFLASASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGIFPHNRSLNDPIALEEERRLCYVGVTRAKEQLFLTYAKERYVWGNKEMKVASQFLQELPPELLTSNLKPKKTPKVVPIQTTASNQRKWGVGDRVLHSTFGEGEVTHILGEGKKMNLAVKFSGLGQKIIDPRTAPMQLIHE
>NC_010296.1|WP_012267167.1|4226096_4227347_-|methionine-adenosyltransferase
MSKRYLFTSESVTEGHPDKICDQISDTILDALLSQDDHSRVAAEVVVNTGLVLITGEITSKAQVHFVDLVRKKIAEIGYINADNGFSSNSCTVLVALDEQSPDISQGVTAAQENRELLSNDELDKIGAGDQGIVFGFACNETPEFMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVSVIYEDGRPVGIDTILVSTQHDATIGDITDNDLVQQKIKSDLWEAVVQPVFSDLEIKPDANTRYLVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRYVAKNIVAAGLADKCEIQVGYAIGVARPVSLFVETFGTGKVADDVILDLINKYFELRPAGIIQTFNLRGLPSERGERFYQDVAAYGHFGRNDLDLPWEQTDKAAILKEALTSAVV
>NC_010296.1|WP_012267166.1|4223632_4225507_-|ABC-transporter-ATP-binding-protein
MDNKVLDVRHLTVEFSNQKRTTVAVNNISFSLQKGQVLGCVGESGSGKSVTSLALMGLVPSPGKITGGEICFRPAKGQSMQAVDLLSIPPEELRYYRGGEMAMIFQEPMSSLNPVYNIEFQLTEAILLHQKVTTEQAKNQAISLLQEVRLLPSDEQLEEKYIETFPLENKGHVREKIRTYIQEQKEAILKRYPHELSGGQLQRVMIAMAISCNPTLLIADEPTTALDVTVQAEILRLLRDLCKSDREMSMVFISHDLGVINEIADQIVVMYQGEIVEQGTKEEVLNYPQHPYTKGLLACRPRLNSRPEKLPTVSDFLRVEKDSQGKIIELQEITPPAVKFITLQEEESRIEGLQHHENILSVENLSVRFPVKGVFGQVKTFFNAVDQISFAVKRGETLGLVGESGCGKSTLARTILRLIPATSGDIYFRGENLAKLNPSDPKLRLLRRELQIVFQNPYNSLNPRLSIGKAILEPMVIHHTGGNYKKQRQRVEYLLERVKLDPNWFDRYPHQLSGGQRQRVCIARALALNPQFIICDESVSALDVSVQAGVLNLLKELQQEFNLTYIFISHDLSVVRFMSDRIMVMNKGKIEEMGTANEIINSPQSDYTRKLIASIPQFTQSLAS
>NC_010296.1|WP_012267165.1|4222103_4223501_+|amidase
MSDELLQKSALELAQLIRTKQISPLELTHLYLDRIEKFDCQIGSFVHVARESALATAGAQTEQLSQIAATAELPPFFGVPTAIKDLNAVAGMPVSYGIAALQGNIAQYDEGIVTRIKMAGFILLGKTATSQLGSFPYTENLGFLPTRNPFNRDYTAGGSSGGAAAAVAAGFCPIAQGSDGGGSIRTPAGCCGLVGIKPSRGRVSYAPVGEFQSGIATNGTLSKTVADGAALLTVISGYTTGDPYWLPDPPFSFLEATQRGVKPLRIAFSTSISPFGEAAAVYKNAVIETAKILEGMGHHLTEYSPDLQALIAPFRRIWQAGTAAAAIPRELLSPLNQWLLDNSGSAGEYLQAVRQMHVISRQIVAMFDNFDVLLLPIFLHQPPGIAEWENLPPEEAVNKMISWIAPSPIANASGLPAIALPTGVDSQGLPVAIQLVGKPADEITLLGLSAQLEAANPFGLMANFK
>NC_010296.1|WP_004162618.1|4221425_4221959_-|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MTPQLIEILSADEIRRTITRLASEVIEKSGDLNNLILIGIYTRGVPLANLIASQIESLEGVKVPVGAIDITFYRDDLDRIKTRTPAKTKMPLDVTGKTVILVDDVIYKGRTIRAAFNAIIEYGRPQKIRLLVLVDRGHRELPIHPDFTGKKLPTAAEEQVKVYLQEIDGKDGVELIK
>NC_010296.1|WP_012267164.1|4220317_4221100_+|endonuclease/exonuclease/phosphatase-family-protein
MKLTAMSFNIRYDKPDPDEGNWRVRREAVAALIAHYSPDIIGTQEARANQLLDLHRLLPKYQSLGSDRRRTGLDEHCAILYQPSRLKCLEIYEFWLSETPDVIGSITEAWGNPYPRMVTGAKFRTLEGQTLQFYNTHLDYYSDQAKDLGAKCIQERFCQLDLTKDYLFLTGDFNVNSQQLPRQILTQPLQPEIKLKDALADLELAEQMSFNNYTDTPYLAIDTIYYDSRLQLDWAKVDPSRWLNLIPSDHYPVIAAFTLP
>NC_010296.1|WP_158303546.1|4220163_4220304_-|hypothetical-protein
MRKGSREVGIGSGKWEVGSGKWEVGSGEAVSSPYHPKTLSPYHPIS
>NC_010296.1|WP_012267163.1|4218283_4219900_+|peptide-ABC-transporter-substrate-binding-protein
MRPLRQLYRYLSLFCLCLLLTVGCQSTNSNLPQRDSDRLIIGTTLKPRSIDPADSYELAGLFIIYNLGETLYTYAEGTTNLKPLLATELPQISPDGLTYTIPVRRGVIFHDGTVFNAEAMKFSLERFIKNGGEPSFLLRDTIDKITATKEDEITIKLTRPFAAFPALLAYPGACAVSPKFYQIGEGKFKPEEFIGTGHYRLKAVTSDSFSLEAFDRYWGEPAKNKGVNVQIYLSNPANLFNGFQTGAVDIAYQSLLPPQVRKLRTEAAQEKWQAIESSGAAINFMSLNLKSEPTNNILVRQAIASLVDRDLLNERILQGQGIPLFSLIPTTFSESQPVFKERYGNHNIEQAKQLLKAAGYSQEKPAIVEVWHSSGSITSSSVAAVMKALAKRDLDNRIQFEPNSILGAAFFRNISQGLYTTALSNWYPDFLDADNYIYPFLDCAKGSPETGCEEGGSQSQGSFFYSQEMNQLIAQSRRESNPAKRKQIFGKIQEILADEVPYIPLWQTKEYAFARNGITGVIINPSQTFPFWTIAKKS
>NC_010296.1|WP_012267161.1|4217219_4217759_+|pentapeptide-repeat-containing-protein
MTFPSIDLLAIRQGQIKDLAGMNLAGADLAGADLAGANLRANLRGADLTGANLRGADFRNADLRGAILLDAIVTGASLAGAFLAGAVFNHLDLSGADFRGVDGRGVSFVGAILTQADFTSANLSGADLSATDLEEAIFFGAILRGTNFTDANLLCASLASAATTGAIFDRACLEGTGLT
>NC_010296.1|WP_004162626.1|4216532_4217150_-|DedA-family-protein
MSLELLSLENIEEIAHQYGYWAVFIGITLENTGIPIPGETITIVGGFLAGSGDLNYWLVLVSAITGAVLGDNFGYWLGRAGGWPFLLKVGKFFRIPPQKLELAKEQFSKNAPRAVFFGRFVALLRIFAGPMAGIARMPYGRFFLCNLGGATVWATIMVTLSFFLGRLFPLHQLVSSMARFGILALIIVLAWTIIHPILESRKTAV
>NC_010296.1|WP_004162611.1|4230459_4230891_+|CAAD-domain-containing-protein
MESMQPTETQNPIRTDLPGSLSKPSSSSTEQIWSEYVEPVWDSVMSYLANVPDYIGSFFSGYKKPLIVLGAILASFVTVKVTLAVLDAIDDIPLLAPILQLVGIVYTGWFVWRYLLKDENRRELLAEIDALKAQVFGSHNNPL
>NC_010296.1|WP_041804233.1|4231303_4232476_-|CBS-domain-containing-protein
MVLMSLDTPLSWAPDLEKAINRQPLTVPPTTSLADAIALIGQAHSRLCLLTDDLSPLAAPAGEVRVSCLLVVQGQELLGILTERDVVRLTAQGINLSETTVADVMVHPLITLPQQSAQDIFAALFLFRRYRIRHLPIVDDQGQLIGVISHESIRQILRPANLLRFRRVSDVMTSQVVQAPLTATVLQLAQLMAEHRVSCVVITQRDSEDNDCPVGIVTERDLVQFQAVQIDLHKTRAQTVMSTPLFLLSPEDSLWTAHQEMQKRRVGRLVVSWNWGRGLGIVTQTSLLRVFDPMEMYGVIENLQQTIQQLESERSPSLPSPPADLLPQRTRTPSEKDIAGDRELLLTLLDNAYKDVKYMLANLDIVVEQRRSLLQSVLEKLAHLGREISS
>NC_010296.1|WP_012267172.1|4232699_4233155_-|recombinase-family-protein
MVLQVIALTSPMTATPSNDLSAWERLEQGRQAKASNGGYAGYGSPAFGQRSIDGELVDDPEECRVIELIRRHHKSGKSLQKIADWLNEQGYTTKRGQPWQRISVKRVLDRLYGKVSRISGVTPQTEHNPEVLTPASGDAAPKTIRGSITPK
>NC_010296.1|WP_002763751.1|4233494_4233818_+|thioredoxin
MGTATFIQDETEFDSLLKSESLLVVDCTATWCGPCKLVAPLIDRLADDYRDRAKVFKLDLDSNKPVAKRFGIRSIPAVMVFKQGKLIETLVGVKPYEEFTAAVERQL
>NC_010296.1|WP_012267173.1|4233898_4234225_+|hypothetical-protein
MAMNKLIEIRCPNCGSVAQRLLSDRLPAGYKCPARQVAQTECPVCDYFIAMCWQNGAVLEAYAPGTQGNTAAAIPSQPQSAIAHWPWSSLLTVALSPQESRKLLSGQP
>NC_010296.1|WP_012267174.1|4234275_4234893_+|CBS-domain-containing-protein
MLQAQEIMTQNVVTIRGSATVADAVKLMKEKQLRGLIVEPRHEQDPYGIVTETDIVYKVAAFGHDPKTMRVYEIMVKPCVVVNPELGVEYVARLFAQTRIRRAPVIQGKTLLGIISVSDILFKSDFVEKPKRLFIEDEIEAAREDARAICAAKGEISPDCAAAWDVVEELQAEASHQRAKKQGNNSLQSYCEANPDALECRIYED
>NC_010296.1|WP_002737272.1|4235817_4236129_+|co-chaperone-GroES
MAAVSINVTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDILAAVS
>NC_010296.1|WP_012267175.1|4236175_4237801_+|chaperonin-GroEL
MAKSIIYNEDARRALEKGMDLLAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGITIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKKGIDKAADFLVSQIAKHAKPVEDSKAIAQVGAISAGNDDEVGQMIASAMDKVGKEGVISLEEGKSMTTELEITEGMRFDKGYISPYFVTDTERMECVFEDPAILITDKKIGLVQDLVPILEQVARQGKPLVIIAEDIEKEALATLVVNRLRGVLNVTAVKAPGFGDRRKAMLEDIAVLTGGQVISEDAGLKLETTKIDSLGTARRITMNKDTTTIVAEGNDVAVKTRCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATETEMKDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLETWAKETLQHEELTGALIVSRAISAPLKRIAENAGQNGAVIAERVKEKPFNVGYNAATGEFSDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKSAPPAGGGDFDY
>NC_010296.1|WP_012267176.1|4238132_4239629_+|IS5-like-element-ISMae6-family-transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGAPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSAYSNEPQFEASMLVHFRERITRELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETIKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>NC_010296.1|WP_012267177.1|4239932_4241846_+|tetratricopeptide-repeat-protein
MSKKAKGFGQSPTPTRKFKDFLLAFGDFYRKNSRDETKLQQFLKANINKLDDLLLDALPLVFTSLIADKSINEREIIASLFENFAVTIYKFPLGDRATNLELSITAHNLSLKIYTREDSPEDWAGTLNNLAVACKNRILGDRAENLERAIELYGQALEVRTRKNFPENWAATLNNLAIAYSNRIRGDRADNLEKAIELYEQALEVRTRKNFPVDWAGTLNNLALAYSDRIRGDRADNLEKAIELYGQALEIYTRKNFPVDLARILNNLALAYSNRILGDRAENLEKAIELYGQALEIYTRKNFPVDLARILNNLALAYSNRILGDRAENLEKAIELYGQALEVYTRENFPENWAISQHNLANAYRERVLGERKDNLERAIDLYNQAAQIFTRAAFPVQWAGNQGDLAEALMQRDNPGDLDTAIALLQEALEVSPAGCQDFIDSQYRLGIALSQRYDRDKNFDDLRQALEAYKTALDLISPEHYDRKDIWKALPTTQTILGSRLVRDGEWQQGLQLLLNSVNQLSTSDDRLAHANALYHTGRAYEVLSDREKARLYYRDALRWYEYLQDLPGIAKSRTGLGNVFVSQGHLEKGMKELDRAKAIYRQLPQTDPDKVEEIDIIYQASRRAIERQTSEVYI

Crispr_ID: NC_010296_27

• CRISPR_ID: NC_010296_27
• CRISPR_location: 4275989-4276059
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_27

Consensus_repeat	Method
CCCCCCTTGATAAGGGGGGTGCC	CRISPRCasFinder

spacers of NC_010296_27

>27.1|4276012|25|NC_010296|CRISPRCasFinder
GATCCCCCCTTAGTCCCCCCTTAAT

CRISPR arrays and Neighbor proteins around NC_010296_27

CRISPR arrays

The CRISPR arrays of NC_010296_27

>merge|NC_010296|27|4275989-4276059|CRISPRCasFinder
CCCCCCTTGATAAGGGGGGTGCCGATCCCCCCTTAGTCCCCCCTTAATCCCCCCTTGATAAGGGGGGTGTC

>NC_010296|27|25|4275989-4276059|CRISPRCasFinder
CCCCCCTTGATAAGGGGGGTGCC	GATCCCCCCTTAGTCCCCCCTTAAT
CCCCCCTTGATAAGGGGGGTGTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012267208.1|4279477_4279984_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl|CDD|374761
NC_010296.1|WP_012267201.1|4273346_4274180_-|metallophosphoesterase	unknown	unknown	gnl|CDD|224326
NC_010296.1|WP_012267214.1|4282461_4282893_-|DUF4164-family-protein	unknown	unknown	gnl|CDD|372702
NC_010296.1|WP_158303548.1|4280037_4280250_-|hypothetical-protein	unknown	unknown	gnl|CDD|275060
NC_010296.1|WP_012267203.1|4276112_4277054_-|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|215029
NC_010296.1|WP_012267210.1|4280369_4280894_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl|CDD|374761
NC_010296.1|WP_012267215.1|4282976_4283375_-|DUF4164-family-protein	unknown	unknown	gnl|CDD|372702
NC_010296.1|WP_041804234.1|4278458_4279247_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002759416.1|4275680_4275893_+|DUF2839-domain-containing-protein	unknown	unknown	gnl|CDD|371332
NC_010296.1|WP_002759431.1|4271325_4272393_-|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|187568
NC_010296.1|WP_012267202.1|4274291_4275527_-|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl|CDD|181053
NC_010296.1|WP_012267200.1|4272463_4273243_-|pantothenate-kinase	unknown	unknown	gnl|CDD|237353
NC_010296.1|WP_012267199.1|4266984_4268256_-|glycosyltransferase	unknown	unknown	gnl|CDD|133022
NC_010296.1|WP_004162580.1|4269725_4271249_-|hypothetical-protein	unknown	unknown	gnl|CDD|224839
NC_010296.1|WP_012267213.1|4281943_4282375_-|DUF4164-family-protein	unknown	unknown	gnl|CDD|372702
NC_010296.1|WP_012266664.1|4268305_4269520_-|ISL3-like-element-ISMae36-family-transposase	unknown	unknown	gnl|CDD|376574
NC_010296.1|WP_012267198.1|4265892_4266957_-|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|187568
NC_010296.1|WP_012267212.1|4281529_4281859_-|hypothetical-protein	unknown	unknown	gnl|CDD|371241
NC_010296.1|WP_012267206.1|4277994_4278450_+|DUF29-domain-containing-protein	unknown	unknown	gnl|CDD|366774
NC_010296.1|WP_012267197.1|4263882_4265865_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012267208.1|4279477_4279984_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl|CDD|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	1.71253e-13
NC_010296.1|WP_012267201.1|4273346_4274180_-|metallophosphoesterase	gnl|CDD|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	6.92035e-59
NC_010296.1|WP_012267214.1|4282461_4282893_-|DUF4164-family-protein	gnl|CDD|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	1.51999e-08
NC_010296.1|WP_158303548.1|4280037_4280250_-|hypothetical-protein	gnl|CDD|275060	TIGR04216, halo_surf_glyco, major cell surface glycoprotein. Members of this family are the S-layer-forming halobacterial major cell surface glycoprotein. The highest scores below model cutoffs are fragmentary paralogs to actual members of the family. Modifications include at N-linked and O-linked glycosylation, a C-terminal diphytanylglyceryl modification, and probable cleavage of the PGF-CTERM tail.	0.00137115
NC_010296.1|WP_012267203.1|4276112_4277054_-|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|215029	PLN00016, PLN00016, RNA-binding protein; Provisional.	7.34591e-151
NC_010296.1|WP_012267210.1|4280369_4280894_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl|CDD|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	2.31215e-18
NC_010296.1|WP_012267215.1|4282976_4283375_-|DUF4164-family-protein	gnl|CDD|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	1.31498e-07
NC_010296.1|WP_012267213.1|4281943_4282375_-|DUF4164-family-protein	gnl|CDD|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	2.06162e-08
NC_010296.1|WP_002759416.1|4275680_4275893_+|DUF2839-domain-containing-protein	gnl|CDD|371332	pfam10999, DUF2839, Protein of unknown function (DUF2839). This bacterial family of unknown function appear to be restricted to Cyanobacteria.	2.22624e-35
NC_010296.1|WP_002759431.1|4271325_4272393_-|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|187568	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs. CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.14001e-162
NC_010296.1|WP_012267202.1|4274291_4275527_-|LL-diaminopimelate-aminotransferase	gnl|CDD|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
NC_010296.1|WP_012267200.1|4272463_4273243_-|pantothenate-kinase	gnl|CDD|237353	PRK13331, PRK13331, pantothenate kinase; Reviewed.	1.83588e-136
NC_010296.1|WP_012267199.1|4266984_4268256_-|glycosyltransferase	gnl|CDD|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.49115e-50
NC_010296.1|WP_004162580.1|4269725_4271249_-|hypothetical-protein	gnl|CDD|224839	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones].	3.55982e-06
NC_010296.1|WP_012266664.1|4268305_4269520_-|ISL3-like-element-ISMae36-family-transposase	gnl|CDD|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.04349e-79
NC_010296.1|WP_012267198.1|4265892_4266957_-|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|187568	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs. CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.55573e-148
NC_010296.1|WP_012267212.1|4281529_4281859_-|hypothetical-protein	gnl|CDD|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	0.00760499
NC_010296.1|WP_012267206.1|4277994_4278450_+|DUF29-domain-containing-protein	gnl|CDD|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.00259e-50

Protein sequences

>NC_010296.1|WP_002759416.1|4275680_4275893_+|DUF2839-domain-containing-protein
MGESKRRQSALGDKYGQEENILPWLPITKSQASQAYKLTTRGAWIGIGVLAGVWVVIRFVGPAFGWWNVQ
>NC_010296.1|WP_012267202.1|4274291_4275527_-|LL-diaminopimelate-aminotransferase
MATINSNYLKLKAGYLFPEIARRVQAFAAANPDANIIRLGIGDVTEPLPLACREAMIKAVEEMGDRSSFKGYGPEQGYAWLREKIAVHDFQARGCEISADEIFISDGSKCDTGNILDIFGDNNSIAVTDPVYPVYVDTNVMAGHTGEANDRGEYEGLIYLPITAENNFTAQIPAEKVDLIYLCFPNNPTGATATKEHLTAWVNYARANGSIIFFDAAYEAFITDASLPHSIYEIEGARQCAIEFRSFSKNAGFTGTRCALTVVPQSLTAKAADGSDVQLWKLWNRRQSTKFNGVSYIVQRGAEAVYSPEGQAQVEELVKFYLQNATIIREKLTAAGLEVHGGVNAPYVWVKTPQGLSSWDFFDKLLHTCNVVGTPGSGFGAAGEGYFRLSAFNSRANVEAAMERIISKFPG
>NC_010296.1|WP_012267201.1|4273346_4274180_-|metallophosphoesterase
MRPFWLESLQVERLTIAIAGLPAHLQGIKLVQWSDLHCDEQHLPVAVLQEAIAITNQEKPDLIFLTGDFITDSPRPIFALVDSIKALESQGGIYACLGNHDSYPPHARETVRSALTSVGIRVLWNEIATPYGENFPIVGLADYWSGEFLPQILEQIAPDIPRLVLSHNPDTAMVLRDWRVDLQLSGHTHGGQVTIPGMGSLPIVLEKLRRSLPEPYCQWVPFHRQFSRVVRYWQWSEGFHRVGENQLYVNRGLGTYFPGRLFCPPEVTVITLINRTQ
>NC_010296.1|WP_012267200.1|4272463_4273243_-|pantothenate-kinase
MTEQDTDWIGLMIGNSRLHWGYFCGQTLLACLDTPHLREPLSNEFLQQIFPKLLTNKCNCALMVASVVPNQRELWANYGNLRRITLKDIPLLDLYPTFGIDRALAVLGAGEKYGFPCLVIDAGTALTFTGVDGDKKLVGGAIVPGLKVQLASLRERTAALPEVSLPERLPQMWAKETAEGIRSGIIYTILAGIEKFSLEWLNLYPESGIILTGGDGDLIRDYWQENAITSLLVDKTIIFQGIAAVKGISSGLIDKGEHI
>NC_010296.1|WP_002759431.1|4271325_4272393_-|NAD-dependent-epimerase/dehydratase-family-protein
MAIVLVTGSAGLIGSESVRFFCDRGYTVVGIDNNMRQVFFGEDASTEWNRAKLSQDYGDKYIHHAVDIRDHEAIADIFKTYSHDISLIIHTAAQPSHDWAAKDPYMDFSVNANGTLVLLENTRQHCPQAVFIFCSTNKVYGDRPNELPLVEKELRWEISENHPYFAHGIDELMSIDACKHSLFGASKVAADVLVQEYGRYFEMKTASFRGGCLTGPSHSGTQLHGFLSYLMKCTMIGKEYSIYGYKGKQVRDNIHSYDLVNAFYHFYQTPRVAEVYNIGGSRFSNCSMLEAIQECEAIADKKLNWQYVETNRIGDHIWWISDVSKFKNHYPDWQLTYTVTDILKEIFSQNVSRWL
>NC_010296.1|WP_004162580.1|4269725_4271249_-|hypothetical-protein
MLASKSWTEKILFLIFAVCLIHSFWGISGGWNNPLIDVHAFRQTQTAISVFYLLKGSPWLAYETPVLGVPWSIPMEFPLYQGIVAILVKLFQTPIDQTGRFVSAFFFYLSLIPIYVILSYLQVARAFRWLFLSLFLASPLYLFWARTFMIESTALFFSLAYLACIAVYFRYKSPIIALLACLFGIAASLTKVTTMAGFLILACVWIGINWVKKDSSRNLAKDLLIPVVVFIIIPFLLAKIWVNFADAQKLLNPMAADLITSKALRDWNFGTIAQKLSRSEWRNYLTRTLNDVFGGLIISVMALVILPIFTSKKLLSYGLSLLFILTVAIFTNLHFVHNYYPYANAIFLLGASGFTIMGLIEKKRKIWQSVGWFFLALILLSQLQFYRAFWYPTKLHGNSYLEIASQVQTVTSPEGVLLIYGDYWSSLIPYYSQRRALMFYNRASEEKFKNALYKLSRANHQVEAIVFCRKTRENREDKKYLDSLYNPNEKPVFSNKRCDIYTTRHGK
>NC_010296.1|WP_012266664.1|4268305_4269520_-|ISL3-like-element-ISMae36-family-transposase
MILDKFLNLKGTCIQGYLHLENIGIVCRIESKNQKATCPRCGLESDKLHQNHRHLVKDLPISGQPVYLQINRRQFKCDNCQRPFSEELDFVAKKRTYTKRLAANILEQLKEGDILNVSRINDVTEEEIQRMIEDIAEEITEPDLSELKRLGIDEIALVKGQKNYCAVLVNLDTGKLIAILEKRTQEELRETLTGWGKEVLEQIEEVSIDLWLPYKNLVKELMPSAEVVADRFHVMKQINQELDEQRRAEKRAVEAQKNKKQKAEKEAKLEVLKRSKYSLLKNEEDLTEPQKIKLEAIKEKFPNLKKMQELKEEFRKIYETSENPTEGMLSISEWLAKSSSVFTKSCQTIRNWFGEIISYFERRTTNGVVEGINNKLKLIKRRGYGFRNFRNFWVRSMLSWHLVC
>NC_010296.1|WP_012267199.1|4266984_4268256_-|glycosyltransferase
MLTKIYNNKIFRFLIAGGVAFLINLFLIYWFIDDLGFNTPFLKNVANVISIEISLIASFFIYRIWVWTGGDWTIRDVILIQLPLYHLSAGLAVLLRVFLIFPFLNWLGISPGVNTMIGVLLGASINYVASDSLIFKPKNKTNETEMYYPEGLAPAFQMDGYSHPRQSRDNYAVKTLSIVIPAYNEEDCIESTTHLISERLEEDKIDYEILVVNDNSKDNTEAVLQKINQENPRIRYINNYYPNGFGFAVRCGLENFSGDAVAVVMADNSDSPDNMVDYYYKLQEGYDCVFGSRFIKGGKVIDYPRHKLFVNRLANLFIQVLFGLKFNDTTNAFKIYRKEVIEGISPLLSHHFNLTVEMPLKAIVRGYSYTTIPITWRNRTTGVSKLKLKEMGSRYLFIVLSIWLEKHLSRGDYKRKRKKNQVV
>NC_010296.1|WP_012267198.1|4265892_4266957_-|NAD-dependent-epimerase/dehydratase-family-protein
MTRQVLITGGAGFVGSSLGLGLAQRYPDWKIIALDNLKRRGSELNIPRLKQAGIEFVHGDVRNAEDLEASALPVDLILECSAEPSVLAGYTSPGYVLQTNLIGTINCLELARQTQADFIFLSTSRVYPIAYLNQLNYTETDTRFQLSEQQDLPGVSAFGISEQFPLDLPRSLYGSTKLASELIINEYGDAYGLRTLINRCGVLTGPWQMGKVDQGVFALWVANHYFQKSLKYIGYGGTGKQVRDFLHVADLLDLIDIQIANLEQFKGQTFNVGGGQDFSLSLCETTKLCQEITGNSIMIEAIPENRTGDMPIFITDSRKITSVTGWQPQRDGRKLIQDIFDWIHTHEKELKGIF
>NC_010296.1|WP_012267197.1|4263882_4265865_-|hypothetical-protein
MQITKILASKTIVFNLIISLTQTYLFLAFLPTIHLINPGLDASWSYGISQAAKEKLVFGKEIVFTYGPLGYLTQGAALYSNFKQIILFRFAVHFVLLGLLILRIIKLQTNSFKILILINCIFIFVLGIHYDNTIGFTTDYQIFSIFLLVLSFEKFFVKYLQVNSIIVGMFTGLAILTKLTLGIYIAGTFYLFLFSGFYLAYRKQKLKNLIKYIQSLFNFTLIAISVASIFLYSGQSITVLTKLLVNFIISGIVAFVIDKILNKTRLTTFFKKLLPYLVFYLFYTTLLIQSFSSNNFPSLYEYILNSWQISSGYSSAMSLTGSKRAFISLILAILCCAVIINLLFRLCNSGSISLGTALLFTLFLGFKHGFVRQDFHVVLFCIIVLLIISLYLIKIDDNPVKNKPKLYMIYLIVLLSCVGITFQRINYINYINEPSKLSLLTIIRNYKFSNLNPSKVANNINIVVLLLDNNKFQAEVQRITSENLVKLNNRLKLPDSVLEKVQGKTIDIIPWEFSLIPGNQLNWKPRPIIQSYSAYTEKLDELNYQSLSQSPRDYLIYHFQSIDDRHPFFDEPKAFSYVVCNYQLDSVNSPFQIPAIKTNFYLLERQKVSRCSPTPLGETTNITWDQVYELPTRNSGITRVQVKFEYSWLGKIIKKIFRVC
>NC_010296.1|WP_012267203.1|4276112_4277054_-|NAD-dependent-epimerase/dehydratase-family-protein
MKILIMGGTRFIGVSLTKVLVEQGHEVVLFNRGNKPAPVAGVRQIHGDRTDPAQLKEKLKNESFEAIFDNNGRELSDTQPLVEIFRERIGHFVYVSSAGVYLKSDQMPHKEGDKLDPKSRHKGKHETENYLSEMGLPWTSIRPVYIYGPGNYNDLEAWFFDRLVRNRPIPIPGHGEHFTQFGHVVDLAKAMAAVLGNSQAIGQVYNISGDRYVTFNGLAKACAAAMGKNAEEIEIVNYNPKKFDFGKKKPFPLRVQHFYADINKATRELNWQPEYDLVSGLTDSFQNDYLPSGRDRQEIDLAIDDQILANQQN
>NC_010296.1|WP_012267206.1|4277994_4278450_+|DUF29-domain-containing-protein
MTLAKVKNLYDQDFALWIEATVKQLKSGDLSQVDLENLIEEVESLGKSQPKAVDNFLTRLLEHLLKRCYVVLPDCYWGWEIEIRNFRKELKKEFKYSPSLKRFMIEILEECYREALEAVKEDYPDSNFPDVCPFAEDIDGLLNHKFWEYEK
>NC_010296.1|WP_041804234.1|4278458_4279247_-|hypothetical-protein
MVGAKKSLNLSLLKTLGLVAVIGGLIIAIVEMQQEKVKTLTKEKLLDRNYRQESRLENAQVELLKNIPSFGFDNMLANWSMLQFIQYYGDVDARRETGYGLSPDFMEIVTKNDPKFVRAYLMMSVASSLNAGKPERTVEIMNKGLSKITPDVTDAYFLWLYKGVDELLFLGDIPAAKKSYQMAADWAKIAGNKFIEKSARGTVKFLETNPDSRAPRVGAWMLVWINSQDEETRRLAKENIEKLGGKLIVVNDNQVMAIPPKD
>NC_010296.1|WP_012267208.1|4279477_4279984_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKYLLFSAIKSQAKKARGFTLIELLVVVILLGVLAAISLPSLLGQIAKGRQAEARAALGLINRAQQGYRYEKGTFATLSELSLEAATISLTFYNISEVGTRNPVGVAYELDALTPFADDIKNYAGASGQTAAGAYTGIVCEDETPLEDNVSTSNSAGVLSCVNGIKIN
>NC_010296.1|WP_158303548.1|4280037_4280250_-|hypothetical-protein
MGKWGSGEVGKWGSGEVGKWGSGEVGEFQLKPQHPNTPTPEHPKTPTPEHPNTRTPEHPNTPTPPATRTQ
>NC_010296.1|WP_012267210.1|4280369_4280894_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MNSTFKFKLIQALNKKNGNKGFTLIELLVVVIIIGVLAAIALPNLLGQIAKGRQAEARTHLGTVNRAQQAYRLEQGNFGLFTAAAGSVSTGDLPVSIEPQYYNYTGPTATSTTSALTNASAIGAFDDDIRDYSAAVSQDAAGVFRSIICEATHPTAGVAAATTAATCTTGTRVR
>NC_010296.1|WP_012267212.1|4281529_4281859_-|hypothetical-protein
MSNETVTYSLESVLKEIKDSIKEVNQKMDTLQRDVNDLKVGQAKLTEKVEGMDKRLEKVENEQYTLVKAISDLQGFRGLIVPILIGAMSAAIGAIITVAIRILFLGNNP
>NC_010296.1|WP_012267213.1|4281943_4282375_-|DUF4164-family-protein
MSNETVTYSLESVLKEIKDSIKEVNQKIDTLQKDVNQKIDTLQKDVNQKIDTLQKDVNQKIDSLETRMDERFDKVEDRLTKVEIGQAELKGELKGDIKVLDEKIEGLTVRVGYQEFTNRGILIALVVAVLGGAAKLFGFFPNP
>NC_010296.1|WP_012267214.1|4282461_4282893_-|DUF4164-family-protein
MSNETVTYSLESVLKEIKDSIKEVNQKIDTLQKDVNQKIDTLQKDVNQKIDTLQKDVNQKIDSLETRMDERFDKVEDRLTKVEIGQAELKGELKGNIKVLDEKIEGLTVRVGYQEFTNRGILIALVVAVLGGAAKLFGFFPNP
>NC_010296.1|WP_012267215.1|4282976_4283375_-|DUF4164-family-protein
MSNETVTYSLESVLKEIKDSIKEVNQKIDTLQKDVNQKIDTLQKDVNQKIDSLETRMDERFDKVEDRLTKVEIGQAELKGELKGDIKVLDEKIEGLTVRVGYQEFTNRGILIALVVAVLGGAAKLFGFFPNP

Crispr_ID: NC_010296_28

• CRISPR_ID: NC_010296_28
• CRISPR_location: 4460210-4460329
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: RT

Consensus repeat of NC_010296_28

Consensus_repeat	Method
GAGTGCGATGCCAAAGGCACTGCGTAGCAG	CRISPRCasFinder

spacers of NC_010296_28

>28.1|4460240|60|NC_010296|CRISPRCasFinder
ATCGCCTCGCCCGTAGGTTGGATTGACGCAAGGAAACCCAACATCAATCAACTCATAACA

CRISPR arrays and Neighbor proteins around NC_010296_28

CRISPR arrays

The CRISPR arrays of NC_010296_28

>merge|NC_010296|28|4460210-4460329|CRISPRCasFinder
GAGTGCGATGCCAAAGGCACTGCGTAGCAGATCGCCTCGCCCGTAGGTTGGATTGACGCAAGGAAACCCAACATCAATCAACTCATAACAGAGTGCGATGCCGAAGGCACTGCGTAGCAG

>NC_010296|28|26|4460210-4460329|CRISPRCasFinder
GAGTGCGATGCCAAAGGCACTGCGTAGCAG	ATCGCCTCGCCCGTAGGTTGGATTGACGCAAGGAAACCCAACATCAATCAACTCATAACA
GAGTGCGATGCCGAAGGCACTGCGTAGCAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041804250.1|4455697_4456171_+|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl|CDD|350254
NC_010296.1|WP_012267355.1|4466820_4467096_-|hypothetical-protein	unknown	unknown	gnl|CDD|371241
NC_010296.1|WP_012267354.1|4466009_4466318_-|DUF4164-family-protein	unknown	unknown	gnl|CDD|372702
NC_010296.1|WP_041804254.1|4476348_4477440_-|glycosyl-transferase	unknown	unknown	gnl|CDD|340861
NC_010296.1|WP_002753443.1|4458411_4458804_-|hypothetical-protein	unknown	unknown	gnl|CDD|133136
NC_010296.1|WP_012267355.1|4466431_4466707_-|hypothetical-protein	unknown	unknown	gnl|CDD|371241
NC_010296.1|WP_050766313.1|4468887_4470648_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl|CDD|275209
NC_010296.1|WP_041804252.1|4471392_4472589_+|alanine-racemase	unknown	unknown	gnl|CDD|234600
NC_010296.1|WP_012267342.1|4453645_4454296_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
NC_010296.1|WP_080507034.1|4454468_4455368_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|378925
NC_010296.1|WP_002738090.1|4465600_4465897_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002797232.1|4472802_4474107_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NC_010296.1|WP_041804251.1|4458796_4459015_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267341.1|4453125_4453515_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267363.1|4474235_4476227_-|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl|CDD|223733
NC_010296.1|WP_002738180.1|4459798_4459996_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|224514
NC_010296.1|WP_012267340.1|4452722_4453112_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267345.1|4456173_4456401_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002753441.1|4459206_4459431_-|DUF433-domain-containing-protein	unknown	unknown	gnl|CDD|225291
NC_010296.1|WP_012267353.1|4464142_4465516_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl|CDD|235392

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_050766313.1|4468887_4470648_-|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	1.2e-50	166.8	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_041804250.1|4455697_4456171_+|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl|CDD|350254	cd18687, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_3.	4.25638e-63
NC_010296.1|WP_012267355.1|4466820_4467096_-|hypothetical-protein	gnl|CDD|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	0.00722045
NC_010296.1|WP_041804254.1|4476348_4477440_-|glycosyl-transferase	gnl|CDD|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0.000195689
NC_010296.1|WP_002753443.1|4458411_4458804_-|hypothetical-protein	gnl|CDD|133136	cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	0.000140229
NC_010296.1|WP_002797232.1|4472802_4474107_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.10948e-83
NC_010296.1|WP_050766313.1|4468887_4470648_-|group-II-intron-reverse-transcriptase/maturase	gnl|CDD|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.76929e-121
NC_010296.1|WP_041804252.1|4471392_4472589_+|alanine-racemase	gnl|CDD|234600	PRK00053, alr, alanine racemase; Reviewed.	0
NC_010296.1|WP_012267354.1|4466009_4466318_-|DUF4164-family-protein	gnl|CDD|372702	pfam13747, DUF4164, Domain of unknown function (DUF4164). This is a family of short, approx 100 residue-long, bacterial proteins of unknown function. There is several conserved LE/LD sequence pairs.	3.86286e-07
NC_010296.1|WP_012267342.1|4453645_4454296_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.45643e-53
NC_010296.1|WP_012267363.1|4474235_4476227_-|AarF/ABC1/UbiB-kinase-family-protein	gnl|CDD|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	1.62439e-179
NC_010296.1|WP_080507034.1|4454468_4455368_+|ABC-transporter-permease	gnl|CDD|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	3.28828e-08
NC_010296.1|WP_012267355.1|4466431_4466707_-|hypothetical-protein	gnl|CDD|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	0.00722045
NC_010296.1|WP_002738180.1|4459798_4459996_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	7.31171e-10
NC_010296.1|WP_002753441.1|4459206_4459431_-|DUF433-domain-containing-protein	gnl|CDD|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.95945e-19
NC_010296.1|WP_012267353.1|4464142_4465516_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl|CDD|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0

Protein sequences

>NC_010296.1|WP_002738180.1|4459798_4459996_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKYKIVLYRSEEGITVGVPALPGCWSEGDTEEEALTNIQDAIREYLAALEERLQDGEIREIEMQV
>NC_010296.1|WP_002753441.1|4459206_4459431_-|DUF433-domain-containing-protein
MYKISVNPQIHFGKPCIEGTRITVQSVLELLNEGLSFSIIIQDYYPDLQIEDIRACLQYAIALVAAEDIKLVSA
>NC_010296.1|WP_041804251.1|4458796_4459015_-|hypothetical-protein
MSLTELILLVNNLSQTDKLSLFKLLAAQIPDAELQVIFSASEYPIWSPYDATEAANILMHMIQDDGEASTHA
>NC_010296.1|WP_002753443.1|4458411_4458804_-|hypothetical-protein
MPSTVEFPLSDDEALPTIPITLSHAGLSVSANALLDTGSTVNLLPYDIGPQLGAIWEEQTVRLPLAGNLARVEARGLFVYVQIGNLEPVRLAFAWAKTSQIPLILGQTNFFREFDVCFQRSRCTIEIIRF
>NC_010296.1|WP_012267345.1|4456173_4456401_+|hypothetical-protein
MFQDEIVEEIHRIREEYSRSFNHDLKAIFADLQKQQEEGGREVVNLSRKHGLTTRWSGQRKEVGDDATEISRRST
>NC_010296.1|WP_041804250.1|4455697_4456171_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSETVYIETSILGYLTARPSRDIIVAANIEITREWWNTRRGDFQLYSSQAVVKETSQGDVAIASQRLEILGNLSLLDLNQNVLDLAERFLERSNLPTKADVDAVHIAVATVHGMDYLLTWNCKHIANAQIQGKLAEISLDLGYQLPILCTPYELLGG
>NC_010296.1|WP_080507034.1|4454468_4455368_+|ABC-transporter-permease
MSDTVISSITNQVDSLREVNVSPPNKSFEILKEQVRVEFLQLWRKPMVLVFSLLLPLFIVYIYSNMVDKQLIYQQLIAYAILGLLIISIQTFGTKVAEEKTKGWMKLLQVTPLPPPIYIVAKIIVAIFISGLCLALLFSFFAVTLDFDQPFLTWLFVFCILIVGMIPLNAMMLALGYWIDKDIFGYFTLPIMIVWIVSGLILPIKILPKTVQNLLPYLPIPTYHYAQIALWAGGIPSEKVHIWLDWQWLIWATVVFGMLAAWGYQRSQIDQKLTWFSLLEQIKKKLSKFSLLERLFARF
>NC_010296.1|WP_012267342.1|4453645_4454296_+|ABC-transporter-ATP-binding-protein
MNDISLTINEGEFVLLLGLNSSGKTTALNIITGVYTPSEGQVELFGNQLSDNLIPREIKERMGIVFSKVELPEQLTVEEIISLFQSYYSNPFGIDEAIKLFELKNWRKTLLKNQQELSQGRNKRLLIALALSGNPDLLLFDEPTANLDPPGRRLFWQLMRDLSSQGKTILICMPEENSAQTEQTTSTIEDLSRARELATRIGFFGLCYAMDGSYKG
>NC_010296.1|WP_012267341.1|4453125_4453515_+|hypothetical-protein
MSQDLRNQKPDVDNSSDIRVKQSPNGELKQFLKQPFGIALAMILIVLLSGTTFVVGKASVSRSFCIASFNCQANTDNDIGGNTSAKAGKNGTVNIEQPSTQQKPSEDHWTEIAIGVGAIAIALWWIVLL
>NC_010296.1|WP_012267340.1|4452722_4453112_+|hypothetical-protein
MSYQLISELLAKYFHQIKQVLTQKSLIVLLLVWTPILFLQTGIMQYLDAQKLPLANSPEISTNYRGINPGLLPVPVDPVSERIRENLYLDNLDIEESSDKDENSLDWLIPVAIGAGAIALCLATGCLIP
>NC_010296.1|WP_012267353.1|4464142_4465516_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MLNTGDTIAAIATAIVPEQGSIGIVRLSGSEAVAIARRLFHSPNRQKWQSHRLLYGYIRHPQSQAIIDEALLLLMLAPRSFTREDVVEFHCHGGIMPVQQVLQLCLENGARLAQAGEFSLRAFLNGRIDLTQAESVVDLVGARSPQAAQFALAGLQGKLAQPIRHLRATCLDILAEIEARIDFEEDLPPLDHAAVLHSIEQVFCQVNLILATAERGELLRSGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDIVESQLVVAGIPVQVLDTAGIRSASDRVEQIGVERSRQTARSADLVLLTVSAESGWTQEDEEIYRSVSDRRLILVINKIDLANPETVIYPAEIKRVVKLSAAQNQGIEDLEKSLINAVQNQELQAANLDLAINQRQAAALTRAKIALQQVKKTIDQNLPFDFWSIDLRTAIQSLGEITGEEVTESVLDRIFSRFCIGK
>NC_010296.1|WP_002738090.1|4465600_4465897_-|hypothetical-protein
MSNETVTYSLDVVLKEIKDSIKEVSQKFDKIDERLTKVEIGIADLKGDIKVLDGKIEGIDNRLRSVEGTQKNQVWTLIILLGSAIITAAWKVFFSSNI
>NC_010296.1|WP_012267354.1|4466009_4466318_-|DUF4164-family-protein
MSNETVTYSLEAVLTRIEGKIDSLEKRVNERFDKVEDRLTKLEIGVTDLKGDIKVLDEKIEGIDNRLKSVEGTQKNQVWTLIILLGSAIITAGWKVFFSSNI
>NC_010296.1|WP_012267355.1|4466431_4466707_-|hypothetical-protein
MSNETVTYSLEAVLTRIEGKIDKIDERLTKVEIGLTDLKGDIKVLDEKIEGIDNRLISVEGTQKNQVWTLIILLGSAIFTAGWKVFFSSNI
>NC_010296.1|WP_012267355.1|4466820_4467096_-|hypothetical-protein
MSNETVTYSLEAVLTRIEGKIDKIDERLTKVEIGLTDLKGDIKVLDEKIEGIDNRLISVEGTQKNQVWTLIILLGSAIFTAGWKVFFSSNI
>NC_010296.1|WP_050766313.1|4468887_4470648_-|group-II-intron-reverse-transcriptase/maturase
MVLSSNEKVMNTATKPMYEWKDINWRKAERCVFKLPKRIFKASQRGDVKLVHKLQRLLLKSWYAKLIAVRRVSQDNQGKKTAGVDGIKSLTPKQRMALVNNLKLGNKSKATRRVWIPKPNTDEKRPLGIPTMYERALQALVKLALEPEWEAKFEPNSYGFRPARSAHDAIGAIYISINKKPKYVLDADISKCFDQINHQKLLTKLQTYPKLRQQIKAWLKSGVMDGKNLFPTNEGTPQGGVISPLLANIALHGMEERVKQYARTLKGNKSKNEQALTLIRYADDFVILHEDLKVIKECQEIIKQWLAEMGLELKPSKTRISHTLETYDDYVGFDFLGFNIRQYQVGKHHGAKSSKGVKLGFKNLIKPSAEKVKSHLKKLGEVVNSQKSSPQDALIKRLNPIIRGWSNYYSSVVSSKTFTDCDYYFFEKLKRWADRRHPMKNKTWIMRKYWHTEGKDNWVFSTREGKNPFKLARHLDTKIVRYVKVKGDKSPYDGDLIYWSSRMGKHPEMPPEKAVLLKRQQGRCAYCGLYFQDGDILETDHIIPKSKGGKNNRDNKQLLHRHCHDSKTALDKTGTHDKEPLERGAV
>NC_010296.1|WP_041804252.1|4471392_4472589_+|alanine-racemase
MVFSIEPKIINPPKNRHDYQLSEAIRYRAWVEIDRSALQQNVRKVKALLAPKTELIAVIKADAYGHGAVKVANSVLEAGAQSLAIATIGEGIELREAGIVAPIMILGAVNTPEEVAALAHWQLQPTLVQIEQVQIFASVMRRLEQRLPVHIKLDTGMSRLGTQWQNGTKFVEQVLEAPNLKIASIYSHFATADDPNPEIMQLQRQRFQQAIAELRSKGYHPPCLHLANSAATLSDRSLHYDRVRVGLALYGLYPADHLTDKVPLQPVLQVKARIAQVKTIAAGSGVSYGHQYIAAKDTRIAVVGIGYADGIPRNLSNRLKVSLRGRLVPQIGAITMDQLMIDVSEIPEVKTGEIVTLIGKDGPQCITADDWARDLGTISWEILCGFKHRLPRIIISNG
>NC_010296.1|WP_002797232.1|4472802_4474107_+|cytochrome-P450
MTISKDLPLPPGSFGLPLLGETIAFLTDGDFASKRHNKYGQLFRTHIFGSPTIILSGAEANRFLLSNENKYFAATWPKSTKTLLGSASLAVHTGDVHASRRRLIYQAFQPRSLASYIPTVETITAHYLERWQTATTLSWYPELRNYTLDIACKLFVGLDDGSATKLGEAFDTWCAGLFTLPIPLPWTAFGKALRCREELLEAIETIILERKKNDDLGQDALAILLQAKDENGQSLSLAELKDQVLLLLFAGHETLTSAIATFCLQMALHPDIFQLVLEEITNFDLSTPLSVDTLKQMTYLDRVLKEVLRFTPPVGGGFRRVIEDCQFNGYHLPKGWVVQYQISNTHKDNNIYSHPETFDPDRFLAEEKPYGYIPFGAGLRECIGKEFARLEMKILAVRLVQKYDWQLLPNQDLTLTSIPTPHPRDGLQVTFKPR
>NC_010296.1|WP_012267363.1|4474235_4476227_-|AarF/ABC1/UbiB-kinase-family-protein
MSEQMISPETQTPEAITVEVQPVHIPEEHREDIGPMDDNVAESWRYNPQVINDYYRRRPLDFLGRLIEIALPVLSFVIGIWWDKLRGKSPKNEIRRAVQLREMLTKLGPTYIKIGQALSTRPDLVPPLYLEELTTLQDQIPSFPNEIAYRFIEEELGYSPEEIYAELSPNPIAAASLGQVYKGKLKTGERVAVKVQRPDLIRCITLDVYIMRSLATWVKGNIKRLRSDLVAITDELASRIFEEINYLHEGQNAEKFAQLYGHIAEIYIPKIYWKYTGRRVLTMEWVDGTKLTNIKEIQAQGIDATHLVNVGVQCSLRQLLEHGFFHADPHPGNLLATPDGKLAYLDFGMMSNIEPYQRYGLIEAVVHLVNRDFESLAKDYVKLDFLSPTTNLEPIVPAFSEVFGNALGASVAELNFKSITDKMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLLTDPSTELRDSLRDLLFKDGTFRWNRLENLLRNAKDSNDFNFEKVTDQALDFLLSDRGIFIREKLVNELVNALDNFGRRTWFNLTVNFRQQVGLAVQETPPELLGDAKSFEHLRNIFTILQETKGFDAMAMVPVMTKLIAKPETQQMGQKIAEGLLQKSLARLIRYLVLEFDRPNHRQNGELPKALPAAD
>NC_010296.1|WP_041804254.1|4476348_4477440_-|glycosyl-transferase
MSRPVVYFAVTNHGFGHAVRSASVVANIIELNPEILPILVTTAPRWLLDSYISGEYIQRHRGFDVGVIQSDSLTMDKLATKEKLEQIIAQSRAIIASEVNFIKTNRVGLVVADLPPLAALIAKSAGLPCWMIGNFGWDFIYRDWGEEFASISDWISRCYNQCDRLFKLPLAEAMTAFPHVTEANLTGGTPRYSEEQLRQEFKLNAPKEKTILLSFGGLGLEAIPYDNLASFPDWQFITFEKNAPELPNLVRLQDKPDRSYRPVDFMPLCDRIISKPGYSTFAEALKLEVPIVSLTREGFAESAILLAGIQDYSDHQIISSEEFFQGNWDFLRQAPQPPRLKVKLAKDGAESIARAIVEYFERQ

Crispr_ID: NC_010296_30

• CRISPR_ID: NC_010296_30
• CRISPR_location: 4596180-4596338
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_010296_30

Consensus_repeat	Method
CTCTACGGCGGTAACGGGAACGAT	CRISPRCasFinder

spacers of NC_010296_30

>30.1|4596204|30|NC_010296|CRISPRCasFinder
ACCCTCTCCGGCGATAGTGGCGATGATATC
>30.2|4596258|57|NC_010296|CRISPRCasFinder
TATCTCCTCGGTGGGATCGGGAATGATGTCGTGAACGGCGATGGCGGCGATGATATC

CRISPR arrays and Neighbor proteins around NC_010296_30

CRISPR arrays

The CRISPR arrays of NC_010296_30

>merge|NC_010296|30|4596180-4596338|CRISPRCasFinder
ATCTCCGGCAATCAGGGCAACGATACCCTCTCCGGCGATAGTGGCGATGATATCCTCAACGGCGGTTCCGATAACGATTATCTCCTCGGTGGGATCGGGAATGATGTCGTGAACGGCGATGGCGGCGATGATATCCTCGTCGGCGGTAGCGGCAATGAC

>NC_010296|30|28|4596180-4596338|CRISPRCasFinder
ATCTCCGGCAATCAGGGCAACGAT	ACCCTCTCCGGCGATAGTGGCGATGATATC
CTCAACGGCGGTTCCGATAACGAT	TATCTCCTCGGTGGGATCGGGAATGATGTCGTGAACGGCGATGGCGGCGATGATATC
CTCGTCGGCGGTAGCGGCAATGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002740068.1|4589522_4589768_+|ATP-synthase-F0-subunit-C	unknown	unknown	gnl|CDD|177001
NC_010296.1|WP_041804279.1|4594830_4595394_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002795846.1|4590563_4591106_+|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl|CDD|180941
NC_010296.1|WP_002800073.1|4593427_4594375_+|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl|CDD|235535
NC_010296.1|WP_002763366.1|4591106_4591655_+|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl|CDD|235593
NC_010296.1|WP_012267475.1|4611939_4612755_+|prohibitin-family-protein	unknown	unknown	gnl|CDD|259799
NC_010296.1|WP_012267470.1|4603319_4604507_+|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl|CDD|225412
NC_010296.1|WP_002784839.1|4601003_4601609_-|DedA-family-protein	unknown	unknown	gnl|CDD|223659
NC_010296.1|WP_002789747.1|4588121_4588484_+|ATP-synthase-subunit-I	unknown	unknown	unknown
NC_010296.1|WP_002763350.1|4607476_4608649_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl|CDD|235472
NC_010296.1|WP_002795871.1|4609316_4610150_-|acyl-CoA-desaturase	unknown	unknown	gnl|CDD|224316
NC_010296.1|WP_002795844.1|4587056_4587497_+|photosystem-II-protein-PsbQ	unknown	unknown	gnl|CDD|274404
NC_010296.1|WP_002795868.1|4605159_4605831_-|riboflavin-synthase	unknown	unknown	gnl|CDD|236455
NC_010296.1|WP_002795864.1|4601798_4603076_-|adenosylhomocysteinase	unknown	unknown	gnl|CDD|235488
NC_010296.1|WP_012267473.1|4605846_4607142_-|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|234685
NC_010296.1|WP_012267476.1|4613072_4614335_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|238742
NC_010296.1|WP_012267463.1|4591723_4593232_+|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl|CDD|236448
NC_010296.1|WP_002795872.1|4610269_4611493_+|methionine-gamma-lyase-family-protein	unknown	unknown	gnl|CDD|311036
NC_010296.1|WP_002795845.1|4589998_4590430_+|F0F1-ATP-synthase-subunit-B'	unknown	unknown	gnl|CDD|235999
NC_010296.1|WP_002739857.1|4588542_4589292_+|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl|CDD|176987

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002740068.1|4589522_4589768_+|ATP-synthase-F0-subunit-C	gnl|CDD|177001	CHL00061, atpH, ATP synthase CF0 C subunit.	7.03718e-36
NC_010296.1|WP_002795844.1|4587056_4587497_+|photosystem-II-protein-PsbQ	gnl|CDD|274404	TIGR03042, hypothetical_protein, photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology. [Energy metabolism, Photosynthesis].	5.83648e-58
NC_010296.1|WP_002795846.1|4590563_4591106_+|F0F1-ATP-synthase-subunit-B	gnl|CDD|180941	PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.	1.03944e-61
NC_010296.1|WP_002800073.1|4593427_4594375_+|F0F1-ATP-synthase-subunit-gamma	gnl|CDD|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	1.64896e-140
NC_010296.1|WP_002763366.1|4591106_4591655_+|F0F1-ATP-synthase-subunit-delta	gnl|CDD|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	2.3596e-57
NC_010296.1|WP_012267475.1|4611939_4612755_+|prohibitin-family-protein	gnl|CDD|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	2.99733e-66
NC_010296.1|WP_002784839.1|4601003_4601609_-|DedA-family-protein	gnl|CDD|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.86475e-49
NC_010296.1|WP_002763350.1|4607476_4608649_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl|CDD|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NC_010296.1|WP_002795871.1|4609316_4610150_-|acyl-CoA-desaturase	gnl|CDD|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	3.42703e-114
NC_010296.1|WP_002795864.1|4601798_4603076_-|adenosylhomocysteinase	gnl|CDD|235488	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional.	0
NC_010296.1|WP_002795868.1|4605159_4605831_-|riboflavin-synthase	gnl|CDD|236455	PRK09289, PRK09289, riboflavin synthase.	1.52678e-92
NC_010296.1|WP_012267470.1|4603319_4604507_+|ImmA/IrrE-family-metallo-endopeptidase	gnl|CDD|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	1.77644e-26
NC_010296.1|WP_012267473.1|4605846_4607142_-|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_010296.1|WP_012267476.1|4613072_4614335_+|VWA-domain-containing-protein	gnl|CDD|238742	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.	1.05058e-52
NC_010296.1|WP_012267463.1|4591723_4593232_+|F0F1-ATP-synthase-subunit-alpha	gnl|CDD|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_010296.1|WP_002795872.1|4610269_4611493_+|methionine-gamma-lyase-family-protein	gnl|CDD|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
NC_010296.1|WP_002795845.1|4589998_4590430_+|F0F1-ATP-synthase-subunit-B'	gnl|CDD|235999	PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.	1.0898e-51
NC_010296.1|WP_002739857.1|4588542_4589292_+|F0F1-ATP-synthase-subunit-A	gnl|CDD|176987	CHL00046, atpI, ATP synthase CF0 A subunit.	3.98052e-153

Protein sequences

>NC_010296.1|WP_041804279.1|4594830_4595394_+|hypothetical-protein
MTSAANSGNILMGLGLEAILAQFANSETYYQNLTAIFGNQYDTSKAETLRIQWQEGDFSNLPAILVLPADRLAGARGAYSITTDTIYIADRQTSFEGLVNLLLEEIGHAIDRSLNPIDTKGDEGAIFAAFVLGQELSPEILNRWREEDDRATIVVDGRGLVVEKQDIVGTNNDDIYREPRAQISLRD
>NC_010296.1|WP_002800073.1|4593427_4594375_+|F0F1-ATP-synthase-subunit-gamma
MPNLKAIRDQIQSVKNTKKITEAMRLVAAAKVRRAQEQVLCTRPFADALAQVLYNLQGRLAFSDVNLPLLAQREVKTVALLVVTGDRGLCGGYNTNVIRRAEQRMNELKEQGINYQLVVAGRKAAQYFERRNAPIAAKFINLEQIPTADEAGTIGDELLSLFLSETVDRVELIYTRFISLISATPVIQTLLPLTTQGLAVQDDEIFRLVTKEGKFKVQREKMASQPAQVFPQDMIFEQNPVQILDSLLPLYLNNQLLRALQESAASELAARMTAMSNASENASELIGTLSRTYNKARQAAITQELLEVVAGANAL
>NC_010296.1|WP_012267463.1|4591723_4593232_+|F0F1-ATP-synthase-subunit-alpha
MVAIRPDEISTIIRQQIESYNQEVQVSNVGTVLQVGDGTARIYGLQQAMSGELLEFEDGTVGIALNLEEDNVGAVLMGDGFGIKEGGTVKATGKIAQVPVGDALVGRVVDALGRPIDGKGEILASETRLVESPAPGIVARKSVCEPMQTGITAIDAMIPVGRGQRELIIGDRKTGKTAIAIDTIINQKSEDVICVYVAIGQKASTVAQVIDTLTQRGAMDYTVVVAANANDPATLQYIAPYTGASIAEYFMYKGKATLVIYDDLTKQAQAYRQLSLLMRRPPGREAYPGDVFYLHSRLLERAAKLSDALGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSTDLFNAGFRPAINAGISVSRVGSAAQTKAMKKVAGKLKLELAQFDELEAFAQFASDLDAATQAQLARGQRLRQILKQPQNFPLSVWEQVAVVYAGLNGYLDDIATDKVIDFCAGLREYLKTSKPRYVEIVSTEKQLNDEAEGLLKDGINEYKQAFK
>NC_010296.1|WP_002763366.1|4591106_4591655_+|F0F1-ATP-synthase-subunit-delta
MQGSLISSEIAEPYAQALLSVAQSSGQLEAIGGEIKSLLELLENAPDLRAFIGNPVIKEEAKKAVLSQVMGSSANPYLTNFMMLLVDKRRIQFLEPVCQQYLTLARVLTNTVLAEVSSATELNDSQKQIVIDKVKTLTGANVVELKTKVDGSLIGGVVIKVGSQVFDASIRGQLQRLSLSLR
>NC_010296.1|WP_002795846.1|4590563_4591106_+|F0F1-ATP-synthase-subunit-B
MIIDTILLLATEAKEAAAEGFGINTDILGTNLFNLSILLGLIIFYGRKVLGQILGERQSKIAEALAEAENRKNIAATALAEEQKKLALAKQEAEKIIDNSRSRAKAVTADIAAQAELDIQRMRESAAKDLSAEQDRVLVELRQRITALALANVESQLSTGLEESVQQTLIDRSLANLGGK
>NC_010296.1|WP_002795845.1|4589998_4590430_+|F0F1-ATP-synthase-subunit-B'
MFDFDATLPVMALQFILLAVILNAVFYKPLSKVLDERAEYIRQTESGAKEQLAKTEALVQEYELQLSSARKQSQEIIAQAQAEAQKLASERVAAAQKEAIARKEAVAAEIAQQKEEAFRSLEGQVASLSRQILEKLLGPELVR
>NC_010296.1|WP_002740068.1|4589522_4589768_+|ATP-synthase-F0-subunit-C
MNPTVAAASVIAAALAVGLAAIGPGVGQGTASGEAVSGIARQPEAEGRIRGTLLLSLAFMESLTIYGLVIALVLLFANPFA
>NC_010296.1|WP_002739857.1|4588542_4589292_+|F0F1-ATP-synthase-subunit-A
MLDSLSVLNFYSLASLEVGQHWYWHIGGLKIHGQVIAVSWIVFAILIIASIAATRKIQKVPSGIQNLMEYVLEFLRDLAKNQLGEKEYRPWLPFIGTLFLFIFVSNWLGALIPWKLIELPEGELAAPTNDINTTVALALLTSLAYFYAGISKKGLGYFAHYLEPIPVLLPIKILEDFTKPLSLSFRLFGNILADELVVAVLVFLVPLVVPLPLMALGLFTSAIQALVFATLAGAYIHEALESEHEEEHA
>NC_010296.1|WP_002789747.1|4588121_4588484_+|ATP-synthase-subunit-I
MREYYQLQNTLLITTLILSGLIFIPVCLFYSLNTALNYLLGAMVGVVYLKLLAGEVEKLGVTKNRVGKKGLALFAGLIIIASRWQELHIVPVFLGFLTYKGAIIVYTLQTIFKLEQKADS
>NC_010296.1|WP_002795844.1|4587056_4587497_+|photosystem-II-protein-PsbQ
MPRLRSIISLVLVLLTTLLVSCSGPQATIPTVYSPQKIEQLQVYIQPIAEFRQKMSVLQDLIADKNWVDTRTYIHGPLGQLRQEMVGLSRNLLPKDQEKAKQLAKNLFVHFERIDAAAKEKDASLAATQFQEALKDFDAFLNIVPS
>NC_010296.1|WP_002784839.1|4601003_4601609_-|DedA-family-protein
MTEWITNTMTSMGYLGIALLMFLENLFPPIPSELIMPLAGFTVHEGQMEFIPAVVAGIFGTVIGALPWYYLGRVVDEEKIEKLADKYGKWITVSAKDIQKANQWFNRHGSKAVLLCRLVPGVRTLISLPAGMNHMAMIPFLVYSTIGTTLWVVFLTAAGYFLGKNYPLVEEYLAPVSKIALLVLVIWFILWIIRKRNRRYE
>NC_010296.1|WP_002795864.1|4601798_4603076_-|adenosylhomocysteinase
MVATPVQQKYDIKDISLAPIGKQRIEWAGREMPVLRQLAERYAIEKPFAGLRLVACCHVTTETANLAIALKAGGADALLIASNPLSTQDDVAACLVADYGIPVYAIKGEDNDTYHRHVQIALDHKPQIIIDDGCDVVATLVKERSHQLPDIIGTTEETTTGIVRLQAMLKAGVLSFPAMNVNDAETKHFFDNRYGTGQSTLDGIIRATNILLAGKTVVVAGYGWCGKGVAMRAKGLGSNVIVTEINAVRAIEAAMDGFRVMPMDEAAKEGDIFITVTGNKHVIRAEHFDLMKDGAIVSNSGHFDIEIDLQALGAKADNVKEVRNFTQQYRLKSGKSVVVIGEGRLVNLAAAEGHPSAVMDMSFANQAIGVEYLVKNKGKLAPGIYSIPYELDQEIARLKLQAMGIEIDTLTEAQLEYINSWTSGT
>NC_010296.1|WP_012267470.1|4603319_4604507_+|ImmA/IrrE-family-metallo-endopeptidase
MGEKLTGVNPKIIQWARERARYSLESVAVKFKKDVSVIEKWESGEDFPTYSQLEKLAEIYKRPLALFFFPEPPLEAEEKQEFRTLPDFEIENLAADTIYALRQAKAMQLSLQEINNGINPSTKKIFQDIAVSSSDDLRRLAEQIRNYLNVTLEEQLTWNDQETALKKWRSAVEEAGIFIFKRSFKQREISGFCLIDIEFPIIYLNNSTEKSRQIFTIFHELAHILLQTNGITKSDDRYINSLQGANKSIEIFCNKFAAEFLLPNHVFSEIIRETVVNVNDNDKIISKISSDYKVSREVVLRKLLDNNLISQKEYTLKVNEWYSEQVGKSQDKNKKSGGNPYANQATYLGENYLKLVFNKYYQGQYDIERVADYLNIKKVATVEKLEQYLLDKGLF
>NC_010296.1|WP_002795868.1|4605159_4605831_-|riboflavin-synthase
MFTGLIQALATIRVVDTDRLYLSVSSDTIIQDLMIGDSVAVDGVCLTVEEILPEGFLATASPETLQRTTLGRRIHTETNVNLETSLRVGSKIGGHFVTGHVDGIGCLVESIIVANSWEMTFAAPSSLEEQWNNYIARYIVGKGSIAVNGISLTVADCDASGSWFKVAVIPHTYAETNLSHLKLGDWVNLEGDILGKYVEKLLGMRSYHAPSEISLEFLAEHGY
>NC_010296.1|WP_012267473.1|4605846_4607142_-|glutamate-5-semialdehyde-dehydrogenase
MVTTSLSLPEIARETRQASRQLAILTNEERNEALEAIAEALTANADKILEANIADVQTAKAMQLSPALCARLELSPSKLKAAIAGVRDVAKLADPLATMQINRELDQGLILRRITCPLGVLGVIFEARPDALIQITSLAIKSGNGVILKGGKEAIRSCQALVTIIHQALSQTKVNPAAVRLLTTREEIQELLKLDQYIDLIIPRGSNEFVRYIQNNTRIPVLGHADGICHLYIDKEADLSKAIRITVDGKTQYPAACNTIETLLVHQDIARQFLPAVAQALEEKKVKLLGDEATRQMINVPSATEEDWQTEYSDLILSIKIVDSLESAIEHINYYGSRHTEGIVSENFNTAKTFSDRVDAAGVFHNCSTRFADGFRYGFGAEVGISTQKMPPRGPVGLEGLVTYKYQLVGDGHIVADYSGENAQSFTHKDL
>NC_010296.1|WP_002763350.1|4607476_4608649_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKISILGSTGSIGTQTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQIVAINNESQLEDLKSLISDLDYTPIILAGKEGVIEVARYGDSESVVTGIVGCAGLLPTIAAITAGKDIALANKETLIAGGPVVLPLVEKHRVKLLPADSEHSAIFQCLQGVPTGGLKKIILTASGGAFRDLPVEKLPQVTVADALKHPNWSMGRKITIDSATLMNKGLEVIEAHYLFGVDYNAIDIVIHPQSIIHSLIELQDTSVLAQLGWPDMRLPLLYALSWPERIYTDWEPLNLVKAGSLTFKEPDHQKYPCMGLAYAAGRAGGAMPAVLNAANEQAVALFLEEKISFLDIPRVIEKVCDRFAIHNTSTPSLDDILAADNWARQEVSNCLIANPV
>NC_010296.1|WP_002795871.1|4609316_4610150_-|acyl-CoA-desaturase
MTVATSEKLPIDWVTLIYMAFIHLVALLAFLPSNFSWGAVGVTLILYWITGGLGITLGFHRLVSHRSFKTPKWLEYFLVFCGTLACQGGAIAWIGLHRIHHKYSDTAPDPHDSNKGFWWSHMGWMLHEIPADEEIARFTQDIADDPFYKFCQNYFVPIQIVLGLILYAMGGWPFVIWGIFVRLVLVFHSTWFVNSATHKFGYVSHESHDNSKNCWWVALLTFGEGWHNNHHAYQYSARHGLQWWEVDLTWMTIRLLQILGLATNIKLPPTTATATES
>NC_010296.1|WP_002795872.1|4610269_4611493_+|methionine-gamma-lyase-family-protein
MDIPPLLHRAEKALLPIFSEIDAQVKENLRQVLGAFRENRVGVHHFASVSGYGHDDLGRDTLDQVFAQALGAEKAAVRVQFVSGTHAIACALYGVLRPGDEMLAVAGAPYDTLEEVIGIRGSGQGSLKDFGVSYRQLELDSTGAIDWLALATAVKPQTRLVHIQRSCGYSWRSSLSIDEIERIVRIVKQQNPNTVCFVDNCYGEFINTQEPTNVGADLMAGSLIKNPGGTIVTAGGYIAGKAELVEMACYRLTAPGIGREGGATFDQNRLLYQGLFLAPQMVGEAMKGSHLIAYVGDKLGYPVNPAPFVPRRDIIQAIKLGSPDKLIAFCKAIQAYSPIGSYLDPIPAQMPGYESQVVMAGGTFIDGSTSEFSADGPLREPYIVFCQGGTHWTHISLALEQAIAALS
>NC_010296.1|WP_012267475.1|4611939_4612755_+|prohibitin-family-protein
MNYNRNIIPLMAGGILILAFTTILRPFAVIDTGERGVVMYFGKVQKQILDEGIHPVIPIVTKIKPINVRVQTTEVKAKGSSKDLQDVETTIIVNWHIDPDKVNQIYQQVGDINEIVSGIINPAVSEIVKAATAQRPVQNILQERGELKREIDTSLAQRLRRYGITINDVSLVNFGFSEEFNAAIEAKQVAEQKAEEAAFRAQQAAQEAKAEINRAKGQAEAQKLLRQNLTAEILQQRAIEKWDGRFPVVMTGSGSLPLINIDSNLLSSQKE
>NC_010296.1|WP_012267476.1|4613072_4614335_+|VWA-domain-containing-protein
MRVTLKSALSDSHIDANQSSSQRQLMLSIAATSEQINTNLPINLCLVLDHSGSMQGKPLETVKKAALSLIESLGVNDRLSVIAFDHRAKVILPSQSREDDLTLIRSKIQQLQAGGGTAIDEGIKLGIQESSTGSKGYVSHIFLLTDGENEHGNNQRCLKLAEVAAEYGITLNTFGFGDHWNQDILEKIADIAGGSLSYIERPEQALIEFTRLFNRLQSVRLTNAFLQLELDARTHLAELKPIAQVAPETIEMSIQKEGNFYITRLGDLMIDEEKIILLNLYIDQIPPGTHTIAKVKIRYDDPASGQKGLETATVSLNIASQAIYQSQLNEQVQKSTLTLAKYRQTQIAEEKLKQGDRAAAATMLQTAAKTALQLGEKNAATVLQTNATRLQVGEELSEGDLKKTRIIAKTRLQTDGETGK

Crispr_ID: NC_010296_29

• CRISPR_ID: NC_010296_29
• CRISPR_location: 4595670-4595967
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NC_010296_29

Consensus_repeat	Method
CTCTACGGCGGTAACGGGAACGAT	CRISPRCasFinder

spacers of NC_010296_29

>29.1|4595694|60|NC_010296|CRISPRCasFinder
AACAATATCGACGGGGGCGCAGGCAACGATAAGGTTTTCACCAACGGCGGCGATGACTCG
>29.2|4595778|30|NC_010296|CRISPRCasFinder
TACCTCGACGGGGGAAGCGACAATGACGAA
>29.3|4595832|30|NC_010296|CRISPRCasFinder
TCCCTCTACGGGAGCGAGGGAAACGATGAA
>29.4|4595886|57|NC_010296|CRISPRCasFinder
CTCGTTGACGGCGGTGCAGGGGGCGATATTCTCTACCAAGACGCGGGAAACGATTAT

CRISPR arrays and Neighbor proteins around NC_010296_29

CRISPR arrays

The CRISPR arrays of NC_010296_29

>merge|NC_010296|29|4595670-4595967|CRISPRCasFinder
CTATTCGGCGGGACCGCCAACGATAACAATATCGACGGGGGCGCAGGCAACGATAAGGTTTTCACCAACGGCGGCGATGACTCGGTGTACGGTAAGAACGGGAACGATTACCTCGACGGGGGAAGCGACAATGACGAACTCTACGGCAACGAGGGAAACGATTCCCTCTACGGGAGCGAGGGAAACGATGAACTCTACGGCGGTAACGGGAACGATCTCGTTGACGGCGGTGCAGGGGGCGATATTCTCTACCAAGACGCGGGAAACGATTATCTCTACGGCGGTAACGGGAACGATA

>NC_010296|29|27|4595670-4595967|CRISPRCasFinder
CTATTCGGCGGGACCGCCAACGAT	AACAATATCGACGGGGGCGCAGGCAACGATAAGGTTTTCACCAACGGCGGCGATGACTCG
GTGTACGGTAAGAACGGGAACGAT	TACCTCGACGGGGGAAGCGACAATGACGAA
CTCTACGGCAACGAGGGAAACGAT	TCCCTCTACGGGAGCGAGGGAAACGATGAA
CTCTACGGCGGTAACGGGAACGAT	CTCGTTGACGGCGGTGCAGGGGGCGATATTCTCTACCAAGACGCGGGAAACGATTAT
CTCTACGGCGGTAACGGGAACGATA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002740068.1|4589522_4589768_+|ATP-synthase-F0-subunit-C	unknown	unknown	gnl|CDD|177001
NC_010296.1|WP_041804279.1|4594830_4595394_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002795846.1|4590563_4591106_+|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl|CDD|180941
NC_010296.1|WP_002800073.1|4593427_4594375_+|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl|CDD|235535
NC_010296.1|WP_002763366.1|4591106_4591655_+|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl|CDD|235593
NC_010296.1|WP_012267475.1|4611939_4612755_+|prohibitin-family-protein	unknown	unknown	gnl|CDD|259799
NC_010296.1|WP_012267470.1|4603319_4604507_+|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl|CDD|225412
NC_010296.1|WP_002784839.1|4601003_4601609_-|DedA-family-protein	unknown	unknown	gnl|CDD|223659
NC_010296.1|WP_002789747.1|4588121_4588484_+|ATP-synthase-subunit-I	unknown	unknown	unknown
NC_010296.1|WP_002763350.1|4607476_4608649_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl|CDD|235472
NC_010296.1|WP_002795871.1|4609316_4610150_-|acyl-CoA-desaturase	unknown	unknown	gnl|CDD|224316
NC_010296.1|WP_002795844.1|4587056_4587497_+|photosystem-II-protein-PsbQ	unknown	unknown	gnl|CDD|274404
NC_010296.1|WP_002795868.1|4605159_4605831_-|riboflavin-synthase	unknown	unknown	gnl|CDD|236455
NC_010296.1|WP_002795864.1|4601798_4603076_-|adenosylhomocysteinase	unknown	unknown	gnl|CDD|235488
NC_010296.1|WP_012267473.1|4605846_4607142_-|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|234685
NC_010296.1|WP_012267476.1|4613072_4614335_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|238742
NC_010296.1|WP_012267463.1|4591723_4593232_+|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl|CDD|236448
NC_010296.1|WP_002795872.1|4610269_4611493_+|methionine-gamma-lyase-family-protein	unknown	unknown	gnl|CDD|311036
NC_010296.1|WP_002795845.1|4589998_4590430_+|F0F1-ATP-synthase-subunit-B'	unknown	unknown	gnl|CDD|235999
NC_010296.1|WP_002739857.1|4588542_4589292_+|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl|CDD|176987

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002740068.1|4589522_4589768_+|ATP-synthase-F0-subunit-C	gnl|CDD|177001	CHL00061, atpH, ATP synthase CF0 C subunit.	7.03718e-36
NC_010296.1|WP_002795844.1|4587056_4587497_+|photosystem-II-protein-PsbQ	gnl|CDD|274404	TIGR03042, hypothetical_protein, photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology. [Energy metabolism, Photosynthesis].	5.83648e-58
NC_010296.1|WP_002795846.1|4590563_4591106_+|F0F1-ATP-synthase-subunit-B	gnl|CDD|180941	PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.	1.03944e-61
NC_010296.1|WP_002800073.1|4593427_4594375_+|F0F1-ATP-synthase-subunit-gamma	gnl|CDD|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	1.64896e-140
NC_010296.1|WP_002763366.1|4591106_4591655_+|F0F1-ATP-synthase-subunit-delta	gnl|CDD|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	2.3596e-57
NC_010296.1|WP_012267475.1|4611939_4612755_+|prohibitin-family-protein	gnl|CDD|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	2.99733e-66
NC_010296.1|WP_002784839.1|4601003_4601609_-|DedA-family-protein	gnl|CDD|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.86475e-49
NC_010296.1|WP_002763350.1|4607476_4608649_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl|CDD|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NC_010296.1|WP_002795871.1|4609316_4610150_-|acyl-CoA-desaturase	gnl|CDD|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	3.42703e-114
NC_010296.1|WP_002795864.1|4601798_4603076_-|adenosylhomocysteinase	gnl|CDD|235488	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional.	0
NC_010296.1|WP_002795868.1|4605159_4605831_-|riboflavin-synthase	gnl|CDD|236455	PRK09289, PRK09289, riboflavin synthase.	1.52678e-92
NC_010296.1|WP_012267470.1|4603319_4604507_+|ImmA/IrrE-family-metallo-endopeptidase	gnl|CDD|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	1.77644e-26
NC_010296.1|WP_012267473.1|4605846_4607142_-|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_010296.1|WP_012267476.1|4613072_4614335_+|VWA-domain-containing-protein	gnl|CDD|238742	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.	1.05058e-52
NC_010296.1|WP_012267463.1|4591723_4593232_+|F0F1-ATP-synthase-subunit-alpha	gnl|CDD|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_010296.1|WP_002795872.1|4610269_4611493_+|methionine-gamma-lyase-family-protein	gnl|CDD|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
NC_010296.1|WP_002795845.1|4589998_4590430_+|F0F1-ATP-synthase-subunit-B'	gnl|CDD|235999	PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.	1.0898e-51
NC_010296.1|WP_002739857.1|4588542_4589292_+|F0F1-ATP-synthase-subunit-A	gnl|CDD|176987	CHL00046, atpI, ATP synthase CF0 A subunit.	3.98052e-153

Protein sequences

>NC_010296.1|WP_041804279.1|4594830_4595394_+|hypothetical-protein
MTSAANSGNILMGLGLEAILAQFANSETYYQNLTAIFGNQYDTSKAETLRIQWQEGDFSNLPAILVLPADRLAGARGAYSITTDTIYIADRQTSFEGLVNLLLEEIGHAIDRSLNPIDTKGDEGAIFAAFVLGQELSPEILNRWREEDDRATIVVDGRGLVVEKQDIVGTNNDDIYREPRAQISLRD
>NC_010296.1|WP_002800073.1|4593427_4594375_+|F0F1-ATP-synthase-subunit-gamma
MPNLKAIRDQIQSVKNTKKITEAMRLVAAAKVRRAQEQVLCTRPFADALAQVLYNLQGRLAFSDVNLPLLAQREVKTVALLVVTGDRGLCGGYNTNVIRRAEQRMNELKEQGINYQLVVAGRKAAQYFERRNAPIAAKFINLEQIPTADEAGTIGDELLSLFLSETVDRVELIYTRFISLISATPVIQTLLPLTTQGLAVQDDEIFRLVTKEGKFKVQREKMASQPAQVFPQDMIFEQNPVQILDSLLPLYLNNQLLRALQESAASELAARMTAMSNASENASELIGTLSRTYNKARQAAITQELLEVVAGANAL
>NC_010296.1|WP_012267463.1|4591723_4593232_+|F0F1-ATP-synthase-subunit-alpha
MVAIRPDEISTIIRQQIESYNQEVQVSNVGTVLQVGDGTARIYGLQQAMSGELLEFEDGTVGIALNLEEDNVGAVLMGDGFGIKEGGTVKATGKIAQVPVGDALVGRVVDALGRPIDGKGEILASETRLVESPAPGIVARKSVCEPMQTGITAIDAMIPVGRGQRELIIGDRKTGKTAIAIDTIINQKSEDVICVYVAIGQKASTVAQVIDTLTQRGAMDYTVVVAANANDPATLQYIAPYTGASIAEYFMYKGKATLVIYDDLTKQAQAYRQLSLLMRRPPGREAYPGDVFYLHSRLLERAAKLSDALGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSTDLFNAGFRPAINAGISVSRVGSAAQTKAMKKVAGKLKLELAQFDELEAFAQFASDLDAATQAQLARGQRLRQILKQPQNFPLSVWEQVAVVYAGLNGYLDDIATDKVIDFCAGLREYLKTSKPRYVEIVSTEKQLNDEAEGLLKDGINEYKQAFK
>NC_010296.1|WP_002763366.1|4591106_4591655_+|F0F1-ATP-synthase-subunit-delta
MQGSLISSEIAEPYAQALLSVAQSSGQLEAIGGEIKSLLELLENAPDLRAFIGNPVIKEEAKKAVLSQVMGSSANPYLTNFMMLLVDKRRIQFLEPVCQQYLTLARVLTNTVLAEVSSATELNDSQKQIVIDKVKTLTGANVVELKTKVDGSLIGGVVIKVGSQVFDASIRGQLQRLSLSLR
>NC_010296.1|WP_002795846.1|4590563_4591106_+|F0F1-ATP-synthase-subunit-B
MIIDTILLLATEAKEAAAEGFGINTDILGTNLFNLSILLGLIIFYGRKVLGQILGERQSKIAEALAEAENRKNIAATALAEEQKKLALAKQEAEKIIDNSRSRAKAVTADIAAQAELDIQRMRESAAKDLSAEQDRVLVELRQRITALALANVESQLSTGLEESVQQTLIDRSLANLGGK
>NC_010296.1|WP_002795845.1|4589998_4590430_+|F0F1-ATP-synthase-subunit-B'
MFDFDATLPVMALQFILLAVILNAVFYKPLSKVLDERAEYIRQTESGAKEQLAKTEALVQEYELQLSSARKQSQEIIAQAQAEAQKLASERVAAAQKEAIARKEAVAAEIAQQKEEAFRSLEGQVASLSRQILEKLLGPELVR
>NC_010296.1|WP_002740068.1|4589522_4589768_+|ATP-synthase-F0-subunit-C
MNPTVAAASVIAAALAVGLAAIGPGVGQGTASGEAVSGIARQPEAEGRIRGTLLLSLAFMESLTIYGLVIALVLLFANPFA
>NC_010296.1|WP_002739857.1|4588542_4589292_+|F0F1-ATP-synthase-subunit-A
MLDSLSVLNFYSLASLEVGQHWYWHIGGLKIHGQVIAVSWIVFAILIIASIAATRKIQKVPSGIQNLMEYVLEFLRDLAKNQLGEKEYRPWLPFIGTLFLFIFVSNWLGALIPWKLIELPEGELAAPTNDINTTVALALLTSLAYFYAGISKKGLGYFAHYLEPIPVLLPIKILEDFTKPLSLSFRLFGNILADELVVAVLVFLVPLVVPLPLMALGLFTSAIQALVFATLAGAYIHEALESEHEEEHA
>NC_010296.1|WP_002789747.1|4588121_4588484_+|ATP-synthase-subunit-I
MREYYQLQNTLLITTLILSGLIFIPVCLFYSLNTALNYLLGAMVGVVYLKLLAGEVEKLGVTKNRVGKKGLALFAGLIIIASRWQELHIVPVFLGFLTYKGAIIVYTLQTIFKLEQKADS
>NC_010296.1|WP_002795844.1|4587056_4587497_+|photosystem-II-protein-PsbQ
MPRLRSIISLVLVLLTTLLVSCSGPQATIPTVYSPQKIEQLQVYIQPIAEFRQKMSVLQDLIADKNWVDTRTYIHGPLGQLRQEMVGLSRNLLPKDQEKAKQLAKNLFVHFERIDAAAKEKDASLAATQFQEALKDFDAFLNIVPS
>NC_010296.1|WP_002784839.1|4601003_4601609_-|DedA-family-protein
MTEWITNTMTSMGYLGIALLMFLENLFPPIPSELIMPLAGFTVHEGQMEFIPAVVAGIFGTVIGALPWYYLGRVVDEEKIEKLADKYGKWITVSAKDIQKANQWFNRHGSKAVLLCRLVPGVRTLISLPAGMNHMAMIPFLVYSTIGTTLWVVFLTAAGYFLGKNYPLVEEYLAPVSKIALLVLVIWFILWIIRKRNRRYE
>NC_010296.1|WP_002795864.1|4601798_4603076_-|adenosylhomocysteinase
MVATPVQQKYDIKDISLAPIGKQRIEWAGREMPVLRQLAERYAIEKPFAGLRLVACCHVTTETANLAIALKAGGADALLIASNPLSTQDDVAACLVADYGIPVYAIKGEDNDTYHRHVQIALDHKPQIIIDDGCDVVATLVKERSHQLPDIIGTTEETTTGIVRLQAMLKAGVLSFPAMNVNDAETKHFFDNRYGTGQSTLDGIIRATNILLAGKTVVVAGYGWCGKGVAMRAKGLGSNVIVTEINAVRAIEAAMDGFRVMPMDEAAKEGDIFITVTGNKHVIRAEHFDLMKDGAIVSNSGHFDIEIDLQALGAKADNVKEVRNFTQQYRLKSGKSVVVIGEGRLVNLAAAEGHPSAVMDMSFANQAIGVEYLVKNKGKLAPGIYSIPYELDQEIARLKLQAMGIEIDTLTEAQLEYINSWTSGT
>NC_010296.1|WP_012267470.1|4603319_4604507_+|ImmA/IrrE-family-metallo-endopeptidase
MGEKLTGVNPKIIQWARERARYSLESVAVKFKKDVSVIEKWESGEDFPTYSQLEKLAEIYKRPLALFFFPEPPLEAEEKQEFRTLPDFEIENLAADTIYALRQAKAMQLSLQEINNGINPSTKKIFQDIAVSSSDDLRRLAEQIRNYLNVTLEEQLTWNDQETALKKWRSAVEEAGIFIFKRSFKQREISGFCLIDIEFPIIYLNNSTEKSRQIFTIFHELAHILLQTNGITKSDDRYINSLQGANKSIEIFCNKFAAEFLLPNHVFSEIIRETVVNVNDNDKIISKISSDYKVSREVVLRKLLDNNLISQKEYTLKVNEWYSEQVGKSQDKNKKSGGNPYANQATYLGENYLKLVFNKYYQGQYDIERVADYLNIKKVATVEKLEQYLLDKGLF
>NC_010296.1|WP_002795868.1|4605159_4605831_-|riboflavin-synthase
MFTGLIQALATIRVVDTDRLYLSVSSDTIIQDLMIGDSVAVDGVCLTVEEILPEGFLATASPETLQRTTLGRRIHTETNVNLETSLRVGSKIGGHFVTGHVDGIGCLVESIIVANSWEMTFAAPSSLEEQWNNYIARYIVGKGSIAVNGISLTVADCDASGSWFKVAVIPHTYAETNLSHLKLGDWVNLEGDILGKYVEKLLGMRSYHAPSEISLEFLAEHGY
>NC_010296.1|WP_012267473.1|4605846_4607142_-|glutamate-5-semialdehyde-dehydrogenase
MVTTSLSLPEIARETRQASRQLAILTNEERNEALEAIAEALTANADKILEANIADVQTAKAMQLSPALCARLELSPSKLKAAIAGVRDVAKLADPLATMQINRELDQGLILRRITCPLGVLGVIFEARPDALIQITSLAIKSGNGVILKGGKEAIRSCQALVTIIHQALSQTKVNPAAVRLLTTREEIQELLKLDQYIDLIIPRGSNEFVRYIQNNTRIPVLGHADGICHLYIDKEADLSKAIRITVDGKTQYPAACNTIETLLVHQDIARQFLPAVAQALEEKKVKLLGDEATRQMINVPSATEEDWQTEYSDLILSIKIVDSLESAIEHINYYGSRHTEGIVSENFNTAKTFSDRVDAAGVFHNCSTRFADGFRYGFGAEVGISTQKMPPRGPVGLEGLVTYKYQLVGDGHIVADYSGENAQSFTHKDL
>NC_010296.1|WP_002763350.1|4607476_4608649_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKISILGSTGSIGTQTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQIVAINNESQLEDLKSLISDLDYTPIILAGKEGVIEVARYGDSESVVTGIVGCAGLLPTIAAITAGKDIALANKETLIAGGPVVLPLVEKHRVKLLPADSEHSAIFQCLQGVPTGGLKKIILTASGGAFRDLPVEKLPQVTVADALKHPNWSMGRKITIDSATLMNKGLEVIEAHYLFGVDYNAIDIVIHPQSIIHSLIELQDTSVLAQLGWPDMRLPLLYALSWPERIYTDWEPLNLVKAGSLTFKEPDHQKYPCMGLAYAAGRAGGAMPAVLNAANEQAVALFLEEKISFLDIPRVIEKVCDRFAIHNTSTPSLDDILAADNWARQEVSNCLIANPV
>NC_010296.1|WP_002795871.1|4609316_4610150_-|acyl-CoA-desaturase
MTVATSEKLPIDWVTLIYMAFIHLVALLAFLPSNFSWGAVGVTLILYWITGGLGITLGFHRLVSHRSFKTPKWLEYFLVFCGTLACQGGAIAWIGLHRIHHKYSDTAPDPHDSNKGFWWSHMGWMLHEIPADEEIARFTQDIADDPFYKFCQNYFVPIQIVLGLILYAMGGWPFVIWGIFVRLVLVFHSTWFVNSATHKFGYVSHESHDNSKNCWWVALLTFGEGWHNNHHAYQYSARHGLQWWEVDLTWMTIRLLQILGLATNIKLPPTTATATES
>NC_010296.1|WP_002795872.1|4610269_4611493_+|methionine-gamma-lyase-family-protein
MDIPPLLHRAEKALLPIFSEIDAQVKENLRQVLGAFRENRVGVHHFASVSGYGHDDLGRDTLDQVFAQALGAEKAAVRVQFVSGTHAIACALYGVLRPGDEMLAVAGAPYDTLEEVIGIRGSGQGSLKDFGVSYRQLELDSTGAIDWLALATAVKPQTRLVHIQRSCGYSWRSSLSIDEIERIVRIVKQQNPNTVCFVDNCYGEFINTQEPTNVGADLMAGSLIKNPGGTIVTAGGYIAGKAELVEMACYRLTAPGIGREGGATFDQNRLLYQGLFLAPQMVGEAMKGSHLIAYVGDKLGYPVNPAPFVPRRDIIQAIKLGSPDKLIAFCKAIQAYSPIGSYLDPIPAQMPGYESQVVMAGGTFIDGSTSEFSADGPLREPYIVFCQGGTHWTHISLALEQAIAALS
>NC_010296.1|WP_012267475.1|4611939_4612755_+|prohibitin-family-protein
MNYNRNIIPLMAGGILILAFTTILRPFAVIDTGERGVVMYFGKVQKQILDEGIHPVIPIVTKIKPINVRVQTTEVKAKGSSKDLQDVETTIIVNWHIDPDKVNQIYQQVGDINEIVSGIINPAVSEIVKAATAQRPVQNILQERGELKREIDTSLAQRLRRYGITINDVSLVNFGFSEEFNAAIEAKQVAEQKAEEAAFRAQQAAQEAKAEINRAKGQAEAQKLLRQNLTAEILQQRAIEKWDGRFPVVMTGSGSLPLINIDSNLLSSQKE
>NC_010296.1|WP_012267476.1|4613072_4614335_+|VWA-domain-containing-protein
MRVTLKSALSDSHIDANQSSSQRQLMLSIAATSEQINTNLPINLCLVLDHSGSMQGKPLETVKKAALSLIESLGVNDRLSVIAFDHRAKVILPSQSREDDLTLIRSKIQQLQAGGGTAIDEGIKLGIQESSTGSKGYVSHIFLLTDGENEHGNNQRCLKLAEVAAEYGITLNTFGFGDHWNQDILEKIADIAGGSLSYIERPEQALIEFTRLFNRLQSVRLTNAFLQLELDARTHLAELKPIAQVAPETIEMSIQKEGNFYITRLGDLMIDEEKIILLNLYIDQIPPGTHTIAKVKIRYDDPASGQKGLETATVSLNIASQAIYQSQLNEQVQKSTLTLAKYRQTQIAEEKLKQGDRAAAATMLQTAAKTALQLGEKNAATVLQTNATRLQVGEELSEGDLKKTRIIAKTRLQTDGETGK

Crispr_ID: NC_010296_31

• CRISPR_ID: NC_010296_31
• CRISPR_location: 4808313-4808414
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_31

Consensus_repeat	Method
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA	CRISPRCasFinder

spacers of NC_010296_31

>31.1|4808350|28|NC_010296|CRISPRCasFinder
GCGTAAACGACCACTCTAATCTCTGATC

CRISPR arrays and Neighbor proteins around NC_010296_31

CRISPR arrays

The CRISPR arrays of NC_010296_31

>merge|NC_010296|31|4808313-4808414|CRISPRCasFinder
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAAGCGTAAACGACCACTCTAATCTCTGATCTCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA

>NC_010296|31|29|4808313-4808414|CRISPRCasFinder
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA	GCGTAAACGACCACTCTAATCTCTGATC
TCATGACTGAGATATGTCTGAGTTTTTTGCGATAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002735375.1|4816564_4817020_-|50S-ribosomal-protein-L13	unknown	unknown	gnl|CDD|181703
NC_010296.1|WP_012267606.1|4787183_4787651_-|DUF29-domain-containing-protein	unknown	unknown	gnl|CDD|366774
NC_010296.1|WP_012267617.1|4803949_4805302_-|16S-rRNA-(cytosine(967)-C(5))-methyltransferase	unknown	unknown	gnl|CDD|237856
NC_010296.1|WP_148204774.1|4805298_4805997_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223477
NC_010296.1|WP_012267623.1|4809875_4810997_+|AAA-like-domain-containing-protein	unknown	unknown	gnl|CDD|373105
NC_010296.1|WP_012267607.1|4787647_4789996_-|HDIG-domain-containing-protein	unknown	unknown	gnl|CDD|224397
NC_010296.1|WP_041804305.1|4807946_4808243_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267622.1|4808442_4809699_+|AAA-like-domain-containing-protein	unknown	unknown	gnl|CDD|373105
NC_010296.1|WP_012267627.1|4812764_4813265_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267629.1|4815529_4815733_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_050766317.1|4813288_4815442_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|315987
NC_010296.1|WP_012267609.1|4790256_4791471_-|ISL3-family-transposase	unknown	unknown	gnl|CDD|376574
NC_010296.1|WP_002760058.1|4815893_4816127_-|50S-ribosomal-protein-L31	unknown	unknown	gnl|CDD|177058
NC_010296.1|WP_002796000.1|4801628_4803263_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl|CDD|100087
NC_010296.1|WP_002738526.1|4812276_4812564_-|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl|CDD|178809
NC_010296.1|WP_002760057.1|4816146_4816560_-|30S-ribosomal-protein-S9	unknown	unknown	gnl|CDD|178888
NC_010296.1|WP_012267625.1|4811453_4812284_-|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl|CDD|376806
NC_010296.1|WP_012267614.1|4798214_4801184_+|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|143442
NC_010296.1|WP_002760083.1|4803549_4803960_-|TerB-family-tellurite-resistance-protein	unknown	unknown	gnl|CDD|143581
NC_010296.1|WP_002760089.1|4795421_4796606_-|NAD(P)H-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl|CDD|180969

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012267606.1|4787183_4787651_-|DUF29-domain-containing-protein	gnl|CDD|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	2.55173e-52
NC_010296.1|WP_012267617.1|4803949_4805302_-|16S-rRNA-(cytosine(967)-C(5))-methyltransferase	gnl|CDD|237856	PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.	0
NC_010296.1|WP_148204774.1|4805298_4805997_-|alpha/beta-hydrolase	gnl|CDD|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	1.40317e-50
NC_010296.1|WP_012267623.1|4809875_4810997_+|AAA-like-domain-containing-protein	gnl|CDD|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	5.13194e-25
NC_010296.1|WP_012267607.1|4787647_4789996_-|HDIG-domain-containing-protein	gnl|CDD|224397	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only].	0
NC_010296.1|WP_012267622.1|4808442_4809699_+|AAA-like-domain-containing-protein	gnl|CDD|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	7.17701e-158
NC_010296.1|WP_050766317.1|4813288_4815442_+|tetratricopeptide-repeat-protein	gnl|CDD|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	4.39002e-16
NC_010296.1|WP_002735375.1|4816564_4817020_-|50S-ribosomal-protein-L13	gnl|CDD|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	3.85432e-96
NC_010296.1|WP_012267609.1|4790256_4791471_-|ISL3-family-transposase	gnl|CDD|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	3.9194e-79
NC_010296.1|WP_002760058.1|4815893_4816127_-|50S-ribosomal-protein-L31	gnl|CDD|177058	CHL00136, rpl31, ribosomal protein L31; Validated.	2.4596e-41
NC_010296.1|WP_002796000.1|4801628_4803263_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl|CDD|100087	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_010296.1|WP_002738526.1|4812276_4812564_-|ATP-dependent-Clp-protease-adapter-ClpS	gnl|CDD|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.61351e-43
NC_010296.1|WP_002760057.1|4816146_4816560_-|30S-ribosomal-protein-S9	gnl|CDD|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	1.48765e-76
NC_010296.1|WP_012267625.1|4811453_4812284_-|CPBP-family-intramembrane-metalloprotease	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	5.82243e-10
NC_010296.1|WP_012267614.1|4798214_4801184_+|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl|CDD|143442	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.	0
NC_010296.1|WP_002760083.1|4803549_4803960_-|TerB-family-tellurite-resistance-protein	gnl|CDD|143581	cd07177, terB_like, tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.	7.66633e-10
NC_010296.1|WP_002760089.1|4795421_4796606_-|NAD(P)H-quinone-oxidoreductase-subunit-H	gnl|CDD|180969	PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H; Validated.	0

Protein sequences

>NC_010296.1|WP_041804305.1|4807946_4808243_-|hypothetical-protein
MLDIFPSKSKDKGDSGTSAKSDNYLTSAEKSLLSDLLKVRAATALSFEIETDRIGEADLQDKLEKLADKGYIKVNEEESYKIFTPTWKTRWLRVNGIL
>NC_010296.1|WP_148204774.1|4805298_4805997_-|alpha/beta-hydrolase
MKRLPQHPSHPGENRYRIDKKENCEEKTLSFNPIVIPPSPENPARYLVIMLHGWGADAMDLAPLASMLDLADCQFLFPNAPFDHPQVPGGRAWYALETSDYQGLVPSRQQLHDWIISLEATTGIPLERTFLTGFSQGGAMTLDVGLSLPLAGLGSLSGYLHGEPHPQGPQNVLIVHGKQDPVVPIAAARQARDLLLGLGVNVEYHELNMGHEIPIPALTILRQFLRNRLETA
>NC_010296.1|WP_012267617.1|4803949_4805302_-|16S-rRNA-(cytosine(967)-C(5))-methyltransferase
MNNARQLALLILRDIDRSSAYPDRALDRHLSASSLNCLDTALTTEIVYGIIRRQRTLDALLDRLGKKTAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGKLAAVVNGMLRQYLRLTANGDDPLLLPENTASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNRSPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIERLEGFRAGNYTLQDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEANIKRLDLKAIEIHLGDSRDRPQWHGIADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLAKRQGELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCVSEYYTETGAIEVLPHRHNQDGFFMAKLVKEVWDEK
>NC_010296.1|WP_002760083.1|4803549_4803960_-|TerB-family-tellurite-resistance-protein
MKNKQLLKILIGVAWIDGVIQPSERNYLRQVAVREKLDDDPEIKPLLSELKPVKTSECYRWLESYLGDNPSPEIYQDLLTSISTLIYSDDDVDIQEAKLLTKVQSFDPTHDSHRSMLDKLVTGIQKLYHRAITGSN
>NC_010296.1|WP_002796000.1|4801628_4803263_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MTIETVATKPFSDQKPGTSGLRKSVPVFQQPHYLENFIQAIFNTLDGIEGQTLVVGGDGRYYNRQAIQTILKIAAANGIGRILVGTDGIVSTPAISGLIRENNAFGGIVLSASHNPGGPEGDFGIKYNITNGGPAPENITDAIYAETKVISSYKILLGADINLDRPSSFKLGTMDVEVIDAVTPYVKMMEKIFDFDRIQALLTSGKFKMCMDSLHAVTGPYAYAIFEQRLGAPKGTVLNGIPLEDFGGGHPDPNLVYAHDLVEILFGQEAPDFGAASDGDGDRNMILGRNFFVTPSDSLAVLTANAHLVPGYQNGITGVARSMPTSAAADRVAAKLGIDCYETPTGWKFFGNLLDAGKATLCGEESFGTGSNHIREKDGLWAVLFWLNILAVKGESVEEIVRSHWQEFGRNFYSRHDYEEVALEPAKEMMARLQKLVLDLKGKQFGNYEVEYADDFSYTDPVDGSVSKNQGIRIGFTDGSRIIYRLSGTGTKGATLRVYLESYEPDASKHDIDTQKALQPLIDLAEEIGQIRQSTGREQPTVIT
>NC_010296.1|WP_012267614.1|4798214_4801184_+|L-glutamate-gamma-semialdehyde-dehydrogenase
MVIQIDSTQNYETKTQEIARQLLAETREKKGLWSALQDQMRWDDKLLDWAMSNPNLRVQLFRFIDCLPALRSNAEIANHLQQYLGDASVELPSALKSILNFSDPNSLPAQTAASLISKSVETLARKYIAGEDLGQITRTVTRLRKEKMAFTIDLLGEAVITEAETQVYLQSYLDLMTHLAQEASKWNKVSQIDEADGDLLPQVQVSVKLTAFYSQFDPMDPIGSKEKVCDRIRLLLRRAQELGVAVHFDMEQYVYKNLTLAILKELLLEEEFRSRTDIGITLQAYLRDSAQDLQDLINWAKKRGYPLTVRLVKGAYWDQETIKSRQNHWPQPVYNEKSATDANYERMTQLLLENHQYLYAAIGSHNVRSQALACAIAESLEIPRRRFEMQVLYGMGDQLAKALVKRGHRVRVYSPYGQLLPGMAYLIRRLLENTANSSFLRQNLEDRPVEDLIAAPRVLGKDNPIIPGFPNAPDTDYANEQLRNKASQALTFVKNSLGKTYLPLINGEYVATNVQINSVNPCNPQEIVGKVGLIEVEQAEKAIIAAKQAFPAWKRTPVAKRAEILRKAADLMEARRHELSAWICLEVGKVIQQADPEVSEAIDFCRYYASEMERLDLGHNFDVAGENNRYSYQPRGIALVISPWNFPLAIAVGMTVAALVAGNCTLLKPAETSSVITAKFAEILLEAGIPAGVFQYIPGKGSQVGAHLVSHPDVHLIAFTGSREVGCRIYTDASIVQKGQKHLKRVIAEMGGKNALIVDESADLDQAVVGAVKSAFGYTGQKCSACSRIIVLESVYDSFVDRFVEATKSLNIGPTDLPSTEVGPVIDEKAQARIREYIETGKKEAELALEMPIPEVGYFVSPTVFKNVPPDAVIAMEEIFGPVVAIIKVSNFEEALAVANGTDYALTGGLYSRTPAHINRAMQEFEVGNLYINRGITGAIVSRQPFGGFKMSGVGSKAGGPDYLLQFLEPRHISENIQRQGFAPIEGAD
>NC_010296.1|WP_002760089.1|4795421_4796606_-|NAD(P)H-quinone-oxidoreductase-subunit-H
MAKIETRTEPMVLNMGPHHPSMHGVLRLIVTLDGEDVIDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLADIAVPKRAQYIRVIMLELNRIANHLLWLGPFMADVGAQTPFFYIFREREMIYDLWEAATGMRLINNNYFRIGGVAVDLPYGWVDKCVDFCDYFDPKVDEYEKLITNNPIFRRRIEGIGCITRDEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWEVHWETAGDCFARYLVRIREMRESVKIIRQALKGLPGGPYENLEAKRMAEGKKSAWNDFDYQYIAKKVAPTFKIPKGEHYVRLESGKGELGIFIVGNDDVFPWRWKIRAADFNNLQILPHILKGVKVADIMAILGSIDIIMGSVDR
>NC_010296.1|WP_012267609.1|4790256_4791471_-|ISL3-family-transposase
MILDKFLNLKGTCIQGYLHLENIGIVCRIESKNQKATCPRCGLESDKLHQNHRHLVKDLPISGQPVYLQVNRRQFKCDNCQKPLSEELDFVAKKRTYTKRLAANILEQLKEGDILNVSRINDVTEEEIQRMIEDIAEEITEPDLSELKRLGIDEIALVKGQKNYCAVLVNLDTGKLIAILEKRTQEELRETLTGWGKEVLEQIEEVSIDLWLPYKNLVKELMPSAEVVADRFHVMKQINQELDEQRRAEKRAVEAQKNKKQKAEKEAKLEVLKRSKYSLLKNEEDLTEPQKIKLEAIKEKFPNLKKMQELKEELRKIYETSKNPTEGLLSISEWLAKSSSVFTKSCQTIRNWFGEIISYFERRTTNGVVEGINNKLKLIKRRGYGFRNFRNFWVRSMLSWHLVC
>NC_010296.1|WP_012267607.1|4787647_4789996_-|HDIG-domain-containing-protein
MNHFLHSFTVFPDSARKSRSYSLGKLRRPLIFLFTVGCLTSVVGYRFYNQPKLAVGTISPVTIIAPEDARFQDQETTALKRQKIRAGLLPRLKRDPQTTAQIERSLRDTLGQLSQISPILRRNSILMGRNISNATMETLLTFSAPQWSTLQSRLNYEESFTNLLTKEQEYAVSEIQAYRQRVTKGSFEQFIDRLGQLRQIKEQTSQNYRHSSLNKLKYADLITAAQMGDREWQNLEKALLQAGRRILVQGIPPGISTSHLQDTIAVQISSDRLTSRQQSLAENILLAALEGEANLIEDREATKEQATKAVEAVDTVMSSAQTGQIIVKAGEKITQAQFVLIDGFGLSERGINWMGLGSTAILVTSAIGTFCLVAQRLHRPLRHRDFILLGLLSFTTPILAIANIPFTNLAAVGLLVSSFYGPTLAVTQVLLTAGLSLFSSQGISADLIAGTIGGLLAAMIAGKLRSRDELSLLGMGIGVSQGGVYLLTYLIVSATASTIIYTLLPTALVYGLSGIAWTVIALGLSPYLERCFDVVTPIRLVELSNPNCSLLKRLATEAPGTFQHTLFVACLAEAAARKLHCNVELIRTGTLYHDIGKMHDPLGFIENQMGGPNKHDEINDPYVSAEIIKKHVSEGLVMARRHGLPRVIRDFIPEHQGNLLISYFYQQALQKSAQNGQEFVDEAAFRYDGPIPQSRETAIVMLADSSEAALRSLKEASPEQAMDMIKKIFQARWRDQQLVDSGIRQEELPIIAEVFVQVWQQFHHQRIAYPKAVLEVSSAKKI
>NC_010296.1|WP_012267606.1|4787183_4787651_-|DUF29-domain-containing-protein
MKKDTWLNQLQFLYEQDEHLWLTETIKLLKANRLAELDIQHLIEELEALSKRDKNRVESFLRQIIIHLLLWQYWSKEFELNHRHWQGEIATFRVQLNGYLSTNLEKYLLDNQEKIYQDAVFIVGQKTEISPHNFPLNCPYSLEQMLDRHWLPERN
>NC_010296.1|WP_012267622.1|4808442_4809699_+|AAA-like-domain-containing-protein
MGRSLKVKSEYIPRVKQAVKLNGYASQELLAEDLGFAKSTISLFLNGKSISNLNFFEICQKLALDYREITDWDELEETAAATSEDEGENRAADFSKYIERPPVEQLCLETVSQAGSLLRIKSAKGMGKTLLVDRILSQVDKREYKTVSFSFLQASKGILGDLDRLLSWFALIISKKLGLAALFQEKWQEGLGLYSCTAYFEDHLLKKLDKPLILVLEEIDSLFAYTSVADDFLSLFRLWHEEAKNNNTWQKLHLIITYSTENYVPADLNKSPFNVGTEILLPDFTLEQVLTLANKYQANLGKDELQRIINLVGGHPYLIQKAIYGISQKQLSLADFLETAATEAGIYGDHLRGHLLNLQEHPNLAAGMKKVVESSSPVDLGAAINWQLHSLGLVTFVQNAVQPRYPLYSDYFRYRLSS
>NC_010296.1|WP_012267623.1|4809875_4810997_+|AAA-like-domain-containing-protein
MATNFYHIGGSVPLNAPSYIKREADDIFYDYLKNGQYCYVLNSRQMGKSSLWVQTQKRLQEDNIDCATIDLSGIGKNISEDIWYRVLFEQLVKRFDLSIRGKEQTWWDERAYKSAINRLDQFVEDILLKEVSRPIVICFDEIDSVLSLKFSTDDFFAWLRSCHEKRPHNRDYQRLTFCMLGVAAVYNFILDNNRSPFNIGQDIRLSGFTIRDARKLAEGLQDKVPNPQGVLEEVIDWTGGQPFLTQKICRLISTSRPEFGKESPANPINVGDFIQSQVISNWVSQDSPEHLKTIRNRLLNKRVTGRRMLKLYLEILRNGEITDDGSLDQIELRLTGLVVEDRQKLKVYNKIYRNVFNETWVTTDERPGHNFWN
>NC_010296.1|WP_012267625.1|4811453_4812284_-|CPBP-family-intramembrane-metalloprotease
MNKRLRVIATYPVPLRLGIFILLLLFLWLPIALPLYHFFATNANLVSILTLSVLYLEFLGLSHWWGRTIYGDEGLADYGLIWRRKTPIELINGLAIGLFFTFSLFLSQAFLGWLNFLPANPQIGKIILEGFLVALAVGFAEELLFRGWLLGELEKDYRPAIALVISALIFALAHFIKPLAEIIRTFPQFPALVLLGLILGWAKRACGGNLGKSIGLHAGLIWAYYILNVGQLIKYTGTVPDWLTGIDKNPLAGVMGLLFLTILAIWIRKKAVLSER
>NC_010296.1|WP_002738526.1|4812276_4812564_-|ATP-dependent-Clp-protease-adapter-ClpS
MSTEVIEKRSTATIRKPAPRYRVLLHNDDFNSMEYVVQSLMQTIAGMTQPQAVDIMMEAHTNGTALVITCIQEHAEFYCETLKNKGLTSSIEPDE
>NC_010296.1|WP_012267627.1|4812764_4813265_+|hypothetical-protein
MATDELQNLEDNIQRLKQQLAGIRDAWTGARPEDKVLLQQRINDKRIEIKELEREKWDLIASESQEASFPDAEVMVAEIVTELTAITKEPPSELASAQILELLNQILAKLNQPERSAAAKLKAAISTIPPFVSLTYEAELDTESTFKRYFPTFNRAIAGVKNRLKK
>NC_010296.1|WP_050766317.1|4813288_4815442_+|tetratricopeptide-repeat-protein
MGKSTVNFVGREDELTLIHQKLQTEQGVIVCAVEGLGGIGKTALALEYAKRYQQEYAAQYWLSLRLSGLAEEIVKLAAPYLSLPEILKKESLEKQVYWYWQNWLPQQGKLLLILDDVPNIDRIPDRMLPKDSRIKILVTTRERCLSTEFESIALDVLPLDKCVELLTKIVGTAKVEQEKALVEQICHEILGRLTLAVELVGEYLAKNRHLKFSHLRDKLNLAHTALTKERNHRDYGHLGVAAAIKISWDDLSSAVQKVAILLSLFAPVAIAWTLLEDTAKSTEITESELEEARGQLDNSHLMQPVDEDYSFYRIHPLVREFFQQQLQEIPKINSLYRCAFVETLLTIAENIPQTPTREIIAAVTPAIPHLQLVSQTMLDDIPNLEDNLIQVFLGVALFYKGQGEYDLAAVPLTKCCEEIQSRLGENNLYFASSLNNLALLYKPQGRYAEAEPLYKRSLSLIKQLLGENHPSVATSVNNLALLYQCQGRYTEAESLYKHSLSLREQLLGENHLDVAQSLNNLVVLYEYQGRYAEAEPLCKRCLSLIEQLLGENNLYFATILNNLAELYRFQGRYAEAEPLSKRCLSLKEQLLGENHPDVAQSLNNLAFLYQCQGKYAEAELLYKRSLSLREQRLGENHPSVAKSLNNLAVLYESQGRYAEAEPLYVRAIAIYQERLGENHPHTQKVRQNFMILLSRLSDEELQQRFPDEIVNLLKSIR
>NC_010296.1|WP_012267629.1|4815529_4815733_-|hypothetical-protein
MKYNLMRYWRSHTVAYTLFLDSLPDLLAQVAQKVKQIKDTEQRQNFASCTGLFCAYLKEGSSFIRFF
>NC_010296.1|WP_002760058.1|4815893_4816127_-|50S-ribosomal-protein-L31
MPKKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEGRVDRFLRKYKMGDKSSKKADQK
>NC_010296.1|WP_002760057.1|4816146_4816560_-|30S-ribosomal-protein-S9
MQATDSKNKVVYWGTGRRKSAVAAVRLVPGTGAITVNGRDGETHFNRIPTYIQTIKAPLETLGLENEYDIIVKAEGGGLTGQADAVKLGVARALCQLAPENRPPLKSEGYLTRDPRAKERKKYGLHKARKAPQYSKR
>NC_010296.1|WP_002735375.1|4816564_4817020_-|50S-ribosomal-protein-L13
MNKTPLPNLETLEQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQKVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGAEHPHQAQQPEVLAINTIPAGGN

Crispr_ID: NC_010296_32

• CRISPR_ID: NC_010296_32
• CRISPR_location: 5076925-5077097
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_010296_32

Consensus_repeat	Method
CCCCCTTGATAAGGGGGGTGCCGAT	CRISPRCasFinder

spacers of NC_010296_32

>32.1|5076950|49|NC_010296|CRISPRCasFinder
AGGCGGGGGGATCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGGGAT
>32.2|5077024|49|NC_010296|CRISPRCasFinder
CCCCCCTTAGTCCCCCCTTGATAAGGGGGGTGCCGATCCCCCCTTAATC

CRISPR arrays and Neighbor proteins around NC_010296_32

CRISPR arrays

The CRISPR arrays of NC_010296_32

>merge|NC_010296|32|5076925-5077097|CRISPRCasFinder
TAGCCTTGATAAGGGGGGTGCCGATAGGCGGGGGGATCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGGGATCCCCCTTGATAAGGGGGGTGCCGATCCCCCCTTAGTCCCCCCTTGATAAGGGGGGTGCCGATCCCCCCTTAATCCCCCCTTGATAAGGGGGGTGTCTGA

>NC_010296|32|30|5076925-5077097|CRISPRCasFinder
TAGCCTTGATAAGGGGGGTGCCGAT	AGGCGGGGGGATCCCCCTTGATAAGGGGGGTGCCGATAGGCGGGGGGAT
CCCCCTTGATAAGGGGGGTGCCGAT	CCCCCCTTAGTCCCCCCTTGATAAGGGGGGTGCCGATCCCCCCTTAATC
CCCCCTTGATAAGGGGGGTGTCTGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_041804358.1|5069689_5070112_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_125732807.1|5087905_5088160_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267821.1|5083469_5083721_-|DUF2283-domain-containing-protein	unknown	unknown	gnl|CDD|378367
NC_010296.1|WP_012267811.1|5071342_5071837_+|phosphoribosyltransferase	unknown	unknown	gnl|CDD|225145
NC_010296.1|WP_012263965.1|5074260_5075670_-|IS4-family-transposase	unknown	unknown	gnl|CDD|373239
NC_010296.1|WP_012267812.1|5072170_5074078_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl|CDD|235362
NC_010296.1|WP_012267819.1|5082766_5083174_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl|CDD|226180
NC_010296.1|WP_041805004.1|5071086_5071320_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267822.1|5084695_5085235_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012264307.1|5080676_5081525_-|IS630-like-element-ISMae21-family-transposase	unknown	unknown	gnl|CDD|279973
NC_010296.1|WP_012267824.1|5086155_5087664_+|calcium-binding-protein	unknown	unknown	gnl|CDD|380205
NC_010296.1|WP_012265278.1|5075753_5076824_+|IS630-like-element-ISMae27-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_012267809.1|5070228_5070504_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267807.1|5067897_5069313_-|AAA-like-domain-containing-protein	unknown	unknown	gnl|CDD|373105
NC_010296.1|WP_039899626.1|5083178_5083400_-|transcriptional-regulator	unknown	unknown	gnl|CDD|274230
NC_010296.1|WP_012267829.1|5090203_5090641_-|pentapeptide-repeat-containing-protein	unknown	unknown	gnl|CDD|224276
NC_010296.1|WP_012267805.1|5062784_5063477_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267830.1|5090755_5092228_-|BCD-family-MFS-transporter	unknown	unknown	gnl|CDD|349950
NC_010296.1|WP_012267806.1|5063690_5067848_-|AAA-like-domain-containing-protein	unknown	unknown	gnl|CDD|238121
NC_010296.1|WP_012267826.1|5088509_5088902_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012267821.1|5083469_5083721_-|DUF2283-domain-containing-protein	gnl|CDD|378367	pfam10049, DUF2283, Protein of unknown function (DUF2283). Members of this family of hypothetical bacterial proteins have no known function.	8.02657e-15
NC_010296.1|WP_012267811.1|5071342_5071837_+|phosphoribosyltransferase	gnl|CDD|225145	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only].	2.94769e-21
NC_010296.1|WP_012263965.1|5074260_5075670_-|IS4-family-transposase	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	2.74384e-20
NC_010296.1|WP_012267812.1|5072170_5074078_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl|CDD|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_010296.1|WP_012267819.1|5082766_5083174_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl|CDD|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	3.18079e-35
NC_010296.1|WP_012267829.1|5090203_5090641_-|pentapeptide-repeat-containing-protein	gnl|CDD|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	5.00815e-21
NC_010296.1|WP_012264307.1|5080676_5081525_-|IS630-like-element-ISMae21-family-transposase	gnl|CDD|279973	pfam01710, HTH_Tnp_IS630, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes insertion sequences from Synechocystis PCC 6803 three of which are characterized as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily.	1.47772e-44
NC_010296.1|WP_012267824.1|5086155_5087664_+|calcium-binding-protein	gnl|CDD|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	3.03526e-24
NC_010296.1|WP_012265278.1|5075753_5076824_+|IS630-like-element-ISMae27-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.95756e-18
NC_010296.1|WP_012267807.1|5067897_5069313_-|AAA-like-domain-containing-protein	gnl|CDD|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	5.61729e-140
NC_010296.1|WP_039899626.1|5083178_5083400_-|transcriptional-regulator	gnl|CDD|274230	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids. [Mobile and extrachromosomal element functions, Other].	3.49627e-14
NC_010296.1|WP_012267830.1|5090755_5092228_-|BCD-family-MFS-transporter	gnl|CDD|349950	cd06176, MFS_BCD_PucC-like, Bacteriochlorophyll delivery (BCD) family, also called PucC family, of the Major Facilitator Superfamily. The bacteriochlorophyll delivery (BCD) family, also called PucC family, is composed of the PucC protein and related proteins including LhaA (also called ORF477 and F1696) and bacteriochlorophyll synthase 44.5 kDa chain (also called ORF428). These proteins are found in photosynthetic organisms. Rhodobacter capsulatus LhaA and PucC are implicated in light-harvesting complex 1 and 2 (LH1 and LH2) assembly. PucC may function to shepherd or sequester LH2 alpha and beta proteins to facilitate proper assembly, as well as deliver bacteriochlorophyll a to nascent LH2 complexes. The BCD family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.75301e-145
NC_010296.1|WP_012267806.1|5063690_5067848_-|AAA-like-domain-containing-protein	gnl|CDD|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	9.51796e-93

Protein sequences

>NC_010296.1|WP_012265278.1|5075753_5076824_+|IS630-like-element-ISMae27-family-transposase
MSGVPNINVAESVEDLKSLLKQQVTSLNFAKVQSLYLLKIKEVETVRHLAVLIGRSERTIHRWLSCYREGGIENLLSEPEKLGRPKKISVEEAALIQNELKDPEGFQSYKEIHFWVSIILEIPTSYITVYRLVRNELQAKLKVARPQNLKQLPGEVKIFQNNLSEQLQALLEKESEKVSQYLKVRFWCQDESRFGCHTIVRDKITIKGIKPLGNFQYNFQYLWLYGLIEPRTGSSFFYEFSHLDGECFNQYLTLFSQAFSEELHIIQLDNAPAHTATDLEIPDNIILFYQPPYCPEVNPIERVWLYLKNLLAWGNFNSLDNLRSKLYHLLNSLSNDTIGYLTGWSWILEALCLSGI
>NC_010296.1|WP_012263965.1|5074260_5075670_-|IS4-family-transposase
MEKWAAQELQYADLGDTRRKKRLISIVENLASQPSTSVPQASGNLAAASATYDFWNSPYFHPSDIIAAQAKSTVERIKEHPIVLAVQDTTSLDFTTQKAKKGMGYLDYKKSFGLKVHTTLGVSPVGIPLGLINQYVWAREEKNLGIAKQRKKRETQEKESQRWLDSLSETQQQIPEDIQVVTIGDCEADIFDLFAQSRSPNSHLLIRGTHNRKVNYLEDKQRSGHSEPKYLHQSIREIKACGTLDVQVKRNPNHEARLAKLTVRFASFEIQVPSHHSKATPRQPVKLQVILAEEENPHSGVNPISWLLLTSLDISSFESAITCVRWYSYRWLIERYHFVLKSGCGLEKLQLETGRRIEMALATYSIVAWRLLWLTYQARLHGEESCESFLEEHEWQSLCATIHKKSPPPEKPPSFREAVRMIASLGGFLGRKGDGEPGVKTIWLGLRRLHDISQTWKLSHQISPPIEPP
>NC_010296.1|WP_012267812.1|5072170_5074078_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MTFSSAADFQDEFDVIVVGAGHSGCEAALACARLGCRTLLLTLNLDKIAWQPCNPAVGGPAKSQLTHEVDALGGEIGKMADRTYLQKRVLNASRGPAVWALRAQTDKREYAAVMKGIVETQANLVIREAMATDLILGANEQVLGVETYFGTCFAAKAVILTTGTFLGGKIWIGGKSMAAGRAGEFAAVGLTETLNRLGFETGRLKTGTPARVDKRSVDYSRMEPQPPDDEVRWFSFDPEVWIEREQMNCHLTRTTAATHQLIRDNLHLSPIYGGFIDSKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDIPELYIQGFSTGLPENVQLAMLRTLPGLENCVMLRAAYAVEYDYLPATQCYPTLMTKKIEGLFCAGQINGTTGYEEAAAQGLVAGINAARFALGKELIVFPREESYLGTLVDDLCTKDLREPYRMLTSRSEYRLVLRSDNADQRLTPLGREIGLIDNRRWQLFQSKQANIIAEKERLHETRIKERDQVAIAIVKDTEQKIKGSLSLADLLRRPSLHYLDLDRYGLGNPDINLAEREGVEIEIKYSGYLKRQQNQIDQISRHSNRHLSPDIDYMKIETLSMESREKLTKIKPATIGQASRIGGVNPADINALLVYLEMRQMSAVKS
>NC_010296.1|WP_012267811.1|5071342_5071837_+|phosphoribosyltransferase
MADVYVSWDEYHRLIEKLAVKIDHSGWQFAQIVCLAKGGLRVGDILCRLFRQPLAILYAASYGGQNHQIRGELTISSNLAMIEAKLKSPLLLVDDLVDSGITLQKTSILLREKYGITNIKTAVIWYKAASRIKPDYYVEYYPDNPWIHQPFERYELITPKDLLS
>NC_010296.1|WP_041805004.1|5071086_5071320_+|hypothetical-protein
MDAFSPFPPDWTENAVHAYNFCCPYCGSKAKEAQAVWINRRAPVLGEDSRRKWQEFYHCQCDRVWWAWSSDRPAENK
>NC_010296.1|WP_012267809.1|5070228_5070504_+|hypothetical-protein
MSWDYLNRCLKQEAKAVGKGIIKDVTHISHLENWVKHVGTRAVCNALSSTLAYMTQPITLSDRAYMSPQERDLAYKKMREDFEGYKRRLGC
>NC_010296.1|WP_041804358.1|5069689_5070112_+|hypothetical-protein
MAIHLLPFAAKLTMGAVTAYITFKGCQATAKKINELLDKRYPNVKFRLNATIVDWSVKLIRSTVSSMLAEDKKGEIKKQLQALSIDAWVELFRRIIKDAFNGGNAPNGTESEDPSEEELVIDIIAQTAYTCLLEEAVANS
>NC_010296.1|WP_012267807.1|5067897_5069313_-|AAA-like-domain-containing-protein
MPLRLTPEAFDNIYHEQLTPIQKRILRRLLRGKSYQSIRGDKTVWLDREVLTERNRENLQPRQRERLEMLEAGQLTEQSLLAHHLRGICNTFGVESTGNLTDDLRQVVNNCVRYIPDFVTVDTLEQYELNIPLPSGTVATDSLYYQERSPIEQNCHTYLNNAGEQAILLRLKAPSRMGKTSLIKGLLNNTMVKNGQGKAVYLDLNTDREILTPDVFYPWLCKQIGRQIGLDIRENLRSQWDKESFASDACDEFLEDFILSKIDKPIFLGLDNLLCVCEDPALTDFLEKLRAWHEKGVTNQLWRKLVLILAYSTDDYVIKSLAGSPLANVGKGQELREFNHREVLNLSQKHSLRLTETQLEALQEMIGGHPYLIRQAMYSLSKEEKTLETILAEAATEVGIYHEYLSRLYRSICQYGLKECLKKVIESNRPVVLNPIETFELYSLGLVSRTKDGVEIGCRLYREYFARYLHL
>NC_010296.1|WP_012267806.1|5063690_5067848_-|AAA-like-domain-containing-protein
MINNFYKYGGKLHAHTPSYVKRFADGQLYELLKQNYFCYVFNCRQMGKSSLQAQVKIRLEATNAQENQCVYLSLQEMGVSQSSSENQWYRGLSKKIFRGLNLQKQANFDECWSRFSGQGSVSSFSDFIVEVLLPLTSSNLVIFIDEIDKILELSFRDNFFGLIRAFHEKRAEYDEFNRLTFCFLGVATPNDLIQNPLQSPFNIGRAIELRGFEFNESLVLAQGLQDVANVPEEVLREILFWTGGQPFLTQKVCALLVESQVRIGEGQEKSFIEEFIYSSIIRNWEAQDDPLHLKYIKTRLLAKEILTGKLLEIYRHILQNGYFTTEGNQLESELRLSGLVVKRNADLEIFNPIYREVFSLEWVQKQLDNLRPYAVALNAWLASEKNNVYLLDETETARADIWREGKFLTREDEEFIRDSKLAQKDKDSAQKIEAEREAKKILEKAKKKAQKALTGSIIASALIIAGTLVFAIIQTTKAERASQEANQSMQALTNIKKERDKIGQEVIRANDRLSQVSAERRQIELNARQRLAVAQGNLKRLETARNQAQQQVTQFQRQKTILERERQIILAQKLEAESRTRKSQGELQEIKGSLQVNRQRLEEVNRNLQKAEQAQQLTIKLTQLEQRGINISRRFENGNEGQISLLIEALEIGQELQNVAKSGFKNEYSAPGFLLTIRTIINEIQERNRLVFQAKIITLSPNGQYIVTESKDGAIHLWDLKGNLLTEFKGHQEDVETVAFSPDGKYLVTGSEDDTARLWDLKGNLLKEFKGHQGDVETVAFSPDGKYLATGSMDDTARLWDLNGNLIAELKGHQNNVVSVNFSPDGKYLATGSKDNTLRLWDLKGNLLTEFKGHQKDEDVESVAFSPNGKYLATGSEDENDTARLWDIKGNLVKEFKKNKRIVFSPDSKYLVTRSFEAELWDIKRNVITELNGHQRGVIDVSFSPDGKYLATLDYYGAVRLWNLKGNLIIQFKVHFDQGKRLEFSPDGQYLMSIASTGVIDKNDTLFVWDLPKDLITQLSCLKDNERIQPCIASNVLIDIAKDCYESTESIAFQAIYCSIHHISSVSFSPNGKYLATGPKRSAIAQIWDLQGKLLVNLGKRDLKFGATVADFDASVAFSPNSQYLATGSEDGIARLWNLQGKLLIEFKGHRKNLDINTIAFSPDDQYLATGSQDNTARLWDLKGNLLAQFKGHQQGVSSVAFSPDGKYLATGSGDNTARLWDLKGNLLTKFKGHQQGVSSVAFSPDGKYLATGSGDNTARLWDLKGNLLTKFKGHQEGVSSVAFSPDGKYLATGSWDNTARLWDLQGNILAEFKGHQEGVKSVAFSPDGKYLATGSMDATARLWLIEDLDALLVRGCHWLKDYFVSHPQDLQELPVCQQALKTSR
>NC_010296.1|WP_012267805.1|5062784_5063477_-|hypothetical-protein
MRTTYNPNIFNQLNEFSIAREQLEKRQDHLLELGDVICAYNLHQDVGVSLLHKHFDLDPQERLVEDFVDNQFLIQPRIEADCSDVTAYLWKVEAAQQSGTWNYFPLEFARVNHETHNIKEAAESVTSNHEFLAEMATKLSELGLADIFGIAIIHRGLIKLAEGEIIVETTDDAARTLTCSATVQASIDPDKLTQTLWTFEPNNPVKGATACYIHNDCSHCVRHCRHCINH
>NC_010296.1|WP_012264307.1|5080676_5081525_-|IS630-like-element-ISMae21-family-transposase
MSYSLDLRKKVIDYVENGGSITKAAALFNIGRATIYRWLGREKLEATKVKHRQRKLDWKALSKDVQENPEARLRDRAEKFGVRPSAICYALKNMKVTRKKKELRYRERNREERMKYYRVLRELIKIYGSESLVFIDESGFEEFQACFYAWSKKGKKVFGDRQGKRGKRENLVAGRRKGKKDFIAPMVFTRSLNAEGFEGWLSLYLLPSLTITSVLIMDNAPIHRKTVIKQLVEEAGHQVVFLPKYSPDLNDIEHDFSALKRARMYAPVGTPLDEIIRTYCVA
>NC_010296.1|WP_012267819.1|5082766_5083174_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MNQLIWIADGVAIAIHHRQIAEHGGLEGIRDEGLLESALSRPQNLLAYSKSPPDMASLAAAYAYGIVKNHPFVDGNKRTAYVVTRTFLRLNGYDVQASSQEKYQIWIDLAVGKLSEEELADWIRKRLLKIPLMSG
>NC_010296.1|WP_039899626.1|5083178_5083400_-|transcriptional-regulator
MKLKVTTVGNSMGVIFPKELVEKLRLSKGDMLYVLETPNGFELTPYDPEFVQQMEVAEEVMREDWNVLRKLAT
>NC_010296.1|WP_012267821.1|5083469_5083721_-|DUF2283-domain-containing-protein
MKIDYDRAANAAYIRRFEGKVIDSEEVAPGIVYDYDETDRIVGIEILAVKQRTAEQFKNIDFLLEESEKQEIRQWFGKLILNC
>NC_010296.1|WP_012267822.1|5084695_5085235_-|hypothetical-protein
MKKLYPIITATSLVFIASLAGYHLPATGDQSPVKKIPVFIPDDTNVSLKNGTSLSGRLIKFDSQAKTIALGRDSKTKEVAMKEIKQIEFQGKVIIKSGRLVIRGEEKSSNPKENRKRWQEPLQNFKIIDVNEGKAEVTLTSLDSPEIGGIEDVVRNSSYVVEEIKFNPSDKIEIQVNPH
>NC_010296.1|WP_012267824.1|5086155_5087664_+|calcium-binding-protein
MPLITGDIFNNIITPLFASLGVIGWYSGLGGDDIIFGYDGDDFLDGGNGNDFLDGDDGSDTLHGGLGNDFLDGGDGNDTLNGGLGDDTLYGGLGNDTSDGGDGNDLIIGNDGDDLLLGNAGNDFLIGNAGNDSLDGGLGDDFLNGGDGNDILNGGVGVDSMDGGNGDDLYGVDNSGDIVRELLNTAPGGTADTVLSSVTYSLAPGTLGTQGFGIENLILTGSANINATGNGANNILVGNIGNNVLDGGLGNDTLNGGDGNDILNGGVGVDSMDGGNGDDLYGVDNSGDIVRELLNTAPGGTADTVLSSVTYSLAPGTLGTQGFGIENLILTGSANINATGNGTNNILVGNIGNNVLGGGLGNDALNGSSGQDTLVDFAGSDLFWLDEIGLANRDLIFGFSVLDDRIVLADRLDSSLVGFISPGIKGLGFTGGPLPGNPLNPASFFSGAGFTGGSLGAPSGIYVNTTNGDIWYNDSTVLGSSLIANVGAGAAAGMTNSHFVYG
>NC_010296.1|WP_125732807.1|5087905_5088160_+|hypothetical-protein
MKLLLYAVDDRNMTLQELMRWVEKLSSIEKRQLIEKITAEMASESAEVNQPRPSLWGICADLGQAPSAEDIDKTRREAWGDFTA
>NC_010296.1|WP_012267826.1|5088509_5088902_-|hypothetical-protein
MSIDDPRQVRLLIEKMEASLPIPVRATPETLKIAETKGERYKPDHQFSIDKIFYTGDEGGIICSLKNESGKQTGLICSLTHLRIDNDHPLAADIQSYQKKRSMRIALQDGKTGKALRIAKQNRPKKGFGK
>NC_010296.1|WP_012267829.1|5090203_5090641_-|pentapeptide-repeat-containing-protein
MKRTLMIALGSLASLLLINPVGAENPQQVQQLLNTRECPGCDLRGADLRGAHLIGADLRKANLQGANLEEANLEGADLTDANLEGANLTAAFLTNASFNQADLDGVNFTSAVIYDADVTGASMERINLTNAQIYGTGIAVGGGNP
>NC_010296.1|WP_012267830.1|5090755_5092228_-|BCD-family-MFS-transporter
MATSDISNSTHSSPKPLPKLGLFTMFRLGLFQMGLGIMSLLTLGVLNRIMIDELKVLPFLATAAIAMHQFVSPARIWFGQRSDGKTIFGHHRSGYVWIGAAVFTALAFVALQVVWQLGLSIQTSGWNTISYAWIALLALIFALYGLALSASSTPFAALLVDVSDEDNRSQLVGIVWSMLMVGIVVGAIVSSRLLDTPNICGTNILTYDPTQSAPIANIPQLKANINPVFAIMPAIVFGLCILATFGVEKKYSRFSSRSTLVQREDQITFKDALQVLTASRQTGLFFTFLLMMTLSLFMQDAIMEPFGGEVFGMCIAQTTQLNAFWGTGTLFGIAATGFMLIPRIGKQKTTKYGCIFATICFILLIFAGFSANQSLLKSSLLFFGLASGMITAGATSLMLDLTAAETAGTFIGAWGLSQAIARGLATVLGGTILNIGKVVFSSPVLAYGLVFLVQALGMILAVWLLSRVDVKEFKENARAAIATVMKGEID

Crispr_ID: NC_010296_33

• CRISPR_ID: NC_010296_33
• CRISPR_location: 5174081-5174180
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_33

Consensus_repeat	Method
CAAGTTTGACAGCCTGTCTTTTGACAA	CRISPRCasFinder

spacers of NC_010296_33

>33.1|5174108|46|NC_010296|CRISPRCasFinder
AAAAGTAAAAGTTTGCTTTTAACTGTCCCATTGATTAATTCTACAC

CRISPR arrays and Neighbor proteins around NC_010296_33

CRISPR arrays

The CRISPR arrays of NC_010296_33

>merge|NC_010296|33|5174081-5174180|CRISPRCasFinder
CAAGTTTGACAGCCTGTCTTTTGACAAAAAAGTAAAAGTTTGCTTTTAACTGTCCCATTGATTAATTCTACACCAAGTTTGACAGCTTGTCTTTTGACAA

>NC_010296|33|31|5174081-5174180|CRISPRCasFinder
CAAGTTTGACAGCCTGTCTTTTGACAA	AAAAGTAAAAGTTTGCTTTTAACTGTCCCATTGATTAATTCTACAC
CAAGTTTGACAGCTTGTCTTTTGACAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012267176.1|5179730_5181227_+|IS5-like-element-ISMae6-family-transposase	unknown	unknown	gnl|CDD|290319
NC_010296.1|WP_012267906.1|5182526_5183330_-|type-1-glutamine-amidotransferase	unknown	unknown	gnl|CDD|225974
NC_010296.1|WP_012267907.1|5185019_5186210_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NC_010296.1|WP_050766356.1|5166208_5166436_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_050766324.1|5176683_5176932_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002732729.1|5174241_5174562_+|c-type-cytochrome	unknown	unknown	gnl|CDD|184253
NC_010296.1|WP_012267901.1|5176899_5177094_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267898.1|5173671_5174049_-|plastocyanin	unknown	unknown	gnl|CDD|235060
NC_010296.1|WP_012267897.1|5173306_5173618_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002800853.1|5167914_5168247_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267895.1|5168248_5171134_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_010296.1|WP_012267894.1|5167661_5167904_-|DUF4926-domain-containing-protein	unknown	unknown	gnl|CDD|379816
NC_010296.1|WP_012267896.1|5171567_5173295_-|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl|CDD|180319
NC_010296.1|WP_002767942.1|5165783_5166017_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267900.1|5174678_5176358_+|DUF3352-domain-containing-protein	unknown	unknown	gnl|CDD|371750
NC_010296.1|WP_012267905.1|5181529_5182450_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002776995.1|5183518_5184856_-|Mur-ligase-family-protein	unknown	unknown	gnl|CDD|223840
NC_010296.1|WP_012267890.1|5165519_5165777_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|224937
NC_010296.1|WP_012267903.1|5177793_5178165_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012267893.1|5167168_5167504_-|XisI-protein	unknown	unknown	gnl|CDD|341357

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012267176.1|5179730_5181227_+|IS5-like-element-ISMae6-family-transposase	gnl|CDD|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.64282e-34
NC_010296.1|WP_012267906.1|5182526_5183330_-|type-1-glutamine-amidotransferase	gnl|CDD|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.30743e-121
NC_010296.1|WP_012267907.1|5185019_5186210_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.62076e-111
NC_010296.1|WP_012267890.1|5165519_5165777_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.74051e-15
NC_010296.1|WP_012267898.1|5173671_5174049_-|plastocyanin	gnl|CDD|235060	PRK02710, PRK02710, plastocyanin; Provisional.	4.02235e-69
NC_010296.1|WP_012267894.1|5167661_5167904_-|DUF4926-domain-containing-protein	gnl|CDD|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	3.76533e-15
NC_010296.1|WP_012267900.1|5174678_5176358_+|DUF3352-domain-containing-protein	gnl|CDD|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	2.03914e-178
NC_010296.1|WP_012267893.1|5167168_5167504_-|XisI-protein	gnl|CDD|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	3.51688e-54
NC_010296.1|WP_012267896.1|5171567_5173295_-|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	gnl|CDD|180319	PRK05945, sdhA, succinate dehydrogenase/fumarate reductase flavoprotein subunit.	0
NC_010296.1|WP_002732729.1|5174241_5174562_+|c-type-cytochrome	gnl|CDD|184253	PRK13697, PRK13697, cytochrome c6; Provisional.	2.05842e-46
NC_010296.1|WP_012267895.1|5168248_5171134_-|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.40371e-17
NC_010296.1|WP_002776995.1|5183518_5184856_-|Mur-ligase-family-protein	gnl|CDD|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.22533e-90

Protein sequences

>NC_010296.1|WP_012267898.1|5173671_5174049_-|plastocyanin
MKKLGLLVATLVLVVSSFFFNTAAASAETFTVKMGGDAGTLQFDPPALTIKAGDTVKWVNNKLSPHNIVFDSTKVPEAQASKLSHKGLAFSAGESFESTFSEPGTYTYYCEPHRGAGMVGTITVQ
>NC_010296.1|WP_012267897.1|5173306_5173618_-|hypothetical-protein
MGCGVWGVGCGVWGVGCGVWGVGCGEVGKWGSGEVGKWGSGEVGRINKNSLLTTGYCLLSPISCLLSPVSCLLSPVSCLVKYKVSVTKLTSEQFSPHHRNRSP
>NC_010296.1|WP_012267896.1|5171567_5173295_-|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit
MKEHDVVIVGGGLAGCRAALEIKRLNPTIDVAVVAKTHPIRSHSVAAQGGIAAALQNVDPKDNPKAHAYDTVKGSDFLADQDAVDILTKEAPEVIIELEHLGVLFSRLEDGRIAQRAFGGHSHNRACYAADKTGHAMLHELVSNLGRNQVKIYDEWYVLRLILEEGTAKGVVMYQIATGQLEILRAKAIMFGTGGYGRVYNTTSNDFACTGDGLALSAKAGIPLEDMEFVQFHPTGLYPVGVLISEAVRGEGAYLINSEGRRFMEDYAPSRMELAPRDITSRAITLEIRAGRGVNLDGSAGGPFVYLDLRHLGREKIMSRIPFCWEEAHRLVGVDAVEEPMPVRPTVHYCMGGIPVNTDGRVRLSADTLSEGFFSAGECSCVSVHGANRLGSNSLLECVVYGRRTGKSIAKYVEKRAFPVFNPDIYLQDAKEEITALLTKKGTIRIGQLRQQFQDCMTQHCGVFRTEATMREGIKQIGELKRQYEQIYLDDRGDCWNTELIEAWELQSLMVVGEIILTSALNRQESRGAHSREDFPQRDDQNFLQHTLAYYSPSGIDIDYMPVVIQDFTPVERKY
>NC_010296.1|WP_012267895.1|5168248_5171134_-|tetratricopeptide-repeat-protein
MWYNRKVVMSEEKDMPSIFICYSHQDKGWRDRLLKFLEPLNDEEKIVWSDIDIQPGDIWDEKIKDSLSQVTIAMVLVSQDLLNSRYVKNEELPRILKRREEEGVVIIPIFLRHSTVKSVSFKYTNEEGIEQRFYLHQFQSPSNNSPSNPLCDLKKSEYEKVFVSVEDKLRSLIEESKKKQSEPSKKAVQPLTTSGLVDTQLPPVRRWQGRREELQELQTALGNDHLRLIEITAAGGYGKTALARKFTDQLTADWPVLWVNFNQPYPLAQFGRWLLEELKQNYDEKWNDGQLIDAISKGLTAKPCLLVLNNLETVLTAPVNLVYQQFLQKWLNTESSSKLLVTSREQLKFPVNLQDYYYSWPLKGLKEADAMRYVTEDHGLTGSDEELAQFVDKMGGHPLLMELVCSLMKDKFGKGVSVTESQNLGLNMFDVEGYHRDTETCVREVITASLERLSKEFRESLTRLSVLRENFDDRLAQGLIPEITEEDLRYLARLSLLQEFPPEYNVKRRQFQFLPLISMVVQDQANPEILRSAHQLALDYYLAHLPVPPWESLEDLKEYLEAFYHAGELGEWQLAYDILDEDRGGEWKNKSVDSFLDLQGFYRKQADHYEQVIAGSQREQVCYRNSLSYLGSCYRSLGQYEKAIAFNQQCLDISKEMEDWQGVAISLGNLGFCYKSLGKYDKAIAYHQQYHDISEEIGDRRGVAISLGNMGSCYYSLGQYEKAIAYHQQSLEISEEIGYRQGVASSLGNLGNCYKSLGQYEKAIFYHQQCHDISEAMGDRKGVAISLGNLGNCYYDLGQYEKAIDLYQQYHDISEKISFRQGVAISFGNLSNCYSSLGQYEKAIAYHQQSLDISEKIGDWQGVASSLHTIGSILLKLENYSEAESKIQASLVISQDIDYKYLIAYSLRVLAEIFHKTNRPELALSHCQEALKLCQELGIPLVKDCEELLGQIQGNLGEANK
>NC_010296.1|WP_002800853.1|5167914_5168247_-|hypothetical-protein
MKLPNADQANLGDKLERYCLNPEHSKGKHKALLFKQRLGITLANKEILENALKKAVMEGEAELYKIDQYGTHYDLKFNLCTDIGESLILSCWIVQITENFPRLTNVYPIN
>NC_010296.1|WP_012267894.1|5167661_5167904_-|DUF4926-domain-containing-protein
MNTIQEYDLVALTEDVTATHKTTHQPILLRRGQMGTVLMSFNQQAFLIDFTDQNGQTFAMETVDHSKLLRLISEPELVSV
>NC_010296.1|WP_012267893.1|5167168_5167504_-|XisI-protein
MDKLNHYRKIIHQILVPYSQIIYNNADIQNRLAFDPQNDQYLVISEGWQQNQRYHDCLIHLEIINDKIWVQCDNTEDGITKELLSAGIAKEDIVLGFHEPKIRQYTGFAVA
>NC_010296.1|WP_050766356.1|5166208_5166436_-|hypothetical-protein
MCYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYLLSVICYRVIVLSVIS
>NC_010296.1|WP_002767942.1|5165783_5166017_-|hypothetical-protein
MSTTINLQITFESLTEAIKSLDLTQKQQLLEILEQQIFQAEETSYQDDEETLAELQQVRDEYQSGDYVTLEQYLSKD
>NC_010296.1|WP_012267890.1|5165519_5165777_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MDYSIKISKSVQKQIDNLPNPIKSRILEKIKDLSVEPRPPGVVKLKNSDYEYRLRVGDYRVRYEIDDPKQVILILQCKHRRDVYR
>NC_010296.1|WP_002732729.1|5174241_5174562_+|c-type-cytochrome
MKRLLISLCLLLAVVTFGMARPALADGASIFSANCASCHMGGKNVVNAAKTLKKEDLVKYGKDSVEAIVTQVTKGMGAMPAFGGRLSAEDIEAVANYVLAQAEKGW
>NC_010296.1|WP_012267900.1|5174678_5176358_+|DUF3352-domain-containing-protein
MKLRSFFYILGATVIILLGVATASFAWILADSPLSLLKGGVLREPMAAIFVPKQAPVMVSLLVNPERLESFGQLIATPANRRRSHQQIKDLEKSLLGKTGLNYQKEIKPWLGEEITLAVTSLDFDRDTDNGIQPGYLLAIQSKDGERAKEFLQASYSKQAVSGKFDLVFELYKGVNLIYQRPLTAGDNNRFLASAVVGDTVLFANNIKVLREALNNVQVPDLNLKNSPDYREALKNITEPRIAIVYGNLPPLSAWIANQPVPESPEAKQRLATAFSLKSGGIVAQTALIGVLGQDDQAPILSSPVGALSFIGENSLLVAASRDLNRFWTQVEEGLEADSPLQELITQVLNRFQSPLGLNLPEDIFSWVRGEYSLALVPSSKGMEPDSVFVGERVMGVEVDSAIEHLDELARSRGYNVVNLPLLDRTVTAWTKLTTAVPGGKAQLETIVTGVHTRVDNYEIIASSVEAMGLALSAQKNPILSSGKFRQAITALPAENDGYFYVDWRQLQPVIEAKFPIVRVLELSIKPLFNNLRSLTISSQGSENSVRRGTIFFNLGVKS
>NC_010296.1|WP_050766324.1|5176683_5176932_+|hypothetical-protein
MTTITIVPEFAGKTLTYKAICGNQETSGLTPGQALDLMETSLIAEGENMGETLVILQRFRPDNLFSKQQQERLQELMEEFHQ
>NC_010296.1|WP_012267901.1|5176899_5177094_-|hypothetical-protein
MFPQFKKLAEQRIEAIRERKEREERYIEEREREEREEREERDRNRMVVKPRNNVLLMKFFHQFL
>NC_010296.1|WP_012267903.1|5177793_5178165_-|hypothetical-protein
MLAELAAAEIAKIAFEAVIGKLTEGAMDKGVELCKKIKQKLQKEPAAAQVLAAAEQTKSEAMIEQQVVPFLQVEMLKDTNFAQEIQTLAQQIIAFLIHKRYIPDPEQLNQQRFKCAAQMREPL
>NC_010296.1|WP_012267176.1|5179730_5181227_+|IS5-like-element-ISMae6-family-transposase
MYRKSELPSTPPENFELPFEGKLSQDNRWVIMANLIPWSEFEAEYASLFSEEMGAPAKTFRTALGALIIKEKLGTSDRETVEQIKENPYLQYFLGFSAYSNEPQFEASMLVHFRERITRELINKVNRFMVKNSREIKEEENTEKKLESETQSQPENRGKLILDASCAPADISYPTDLNLLNQGRKQTEKIIDILYETIKGKLVQKPRTYRLLARKSYLEVAKKRKPTVKQRRKALKRQLQYLKRNLDHIEQLLAEGASLQSLKKRDYKLLLVVTEVYRQQLWMYQNNKQSIEDRIVSLTQPHIRPIVRGKAGKPVEFGAKFSASCIDGYIFLDRISWDNFNESGDLKAQIEAYYDYTGYYPESVHVDKIYRTRENRAWCKERGIRISGPPLGRPAKNVSKEQKKQATDDERIRNCIEGKFGQGKRRFSLGKVMAKLPHTSFSAIAITFLVMNLSNLLRQVFWAFLCLKWKNSTFSRSMIRISYNLKINQQLKLMLVAK
>NC_010296.1|WP_012267905.1|5181529_5182450_-|hypothetical-protein
MTGKIIDRQTAGFLVLIIPLAVLIILLFTAWPLILLVFLLTLAVKVWQDYRWSKLSMVINPYFNQLLQDNQGCLTPIDLSAKANLTAKLARQFLDRKAEEFGAQKKAVGDKGMAYYFITASTLGSIFDESDPSLEEIGEKQVPAITASRSPLTNLEPSQEAKSPLIVAEKSENSVSEVPVISSSQSLTNLGKLFEEKEEENTAAISVQETVIQEPEEIINPSLNSSASSLFQSESEVREESLTSVSETISSMSLADLAKRLGVTPAVLGRNKKNKSETEFADWSRIRDPDGIAWKFDAKNSLFVAN
>NC_010296.1|WP_012267906.1|5182526_5183330_-|type-1-glutamine-amidotransferase
MQELELKIGWLYPTLMSTYGDRGNVITIQRRCQWRDIPVTIIPLDAQTEAETFYQVDIIVGGGAQDRQQEIVMRDLQGKKAAAMKEQLSAGIPGVFTCGSPQLLGHYYEPAFGQRIEGLGLLDLVSKHPGPNAKRCIGNVVFEITASPLAEEIKAMTGEKPLVIGFENHGGRTYLQTVSPLGKVITGYGNNGEDGYEGAFYHNAIATYAHGPLLPKNPFLADWLIQKALEQKYQKPIFLTKLDDSLALKARFAMFERLELTGVTNKA
>NC_010296.1|WP_002776995.1|5183518_5184856_-|Mur-ligase-family-protein
MQLFDRIRLGIAVAVAKTVTAVVKGLRLGAASVLPGEIARRLHPRLLPLLCGQVRRGVILVVGTNGKTTTSLLLRTILERQGAKVTHNTTGANLINGLITALLADANLFGTLKADYAILEVDENILPLVLKDCRPRAILALNLFRDQLDRYGEVDTISRRWQGAISPLPTDTLVILNADDPTLSHLGQQLPQRVVYFGLSEPELYLEEIPHAVDSIYCPKCGASLDYRGVYLSHLGDFSCPSCGFKKSNPAFHSHDWPQILIGVYNKYNTLAAGLVAQELGIKDREIFETVQGFKAAFGRAEELEIEGKKVRILLSKNPVGMNETIRAVADILQKEKSSTTLLVLNDRIPDGTDVSWIWDVDTEKLTRLGTTLVVTGDRLYDMALRLQYSQDSLAYPVNLIVESDLKKAIQIALNNTKNEETLHILPTYSAMLEVREILTGRKIL
>NC_010296.1|WP_012267907.1|5185019_5186210_+|trypsin-like-peptidase-domain-containing-protein
MGLLTRLGISLGLIALGGTVGVLGNQYLSRKAPLEVNKPPAILPASLSLPVIPQNDGNVNFIAQAVQKVGPAVVRIDSAREVADQIPEEFKQPFFRRFFGNEVPIPREHLERGTGSGFIVSTDGLLLTNAHVVEGTTQVKVTLKNGQTYQGKVLGVDNMTDVALVKIEAKNLPTVTFGKAETLTPGEWAIAIGNPLGLDNTVTVGIISALGRTSSEVGVPDKRVRFIQTDAAINPGNSGGPLLNAKGEVIGINTAIRADAQGLGFAIPIETAQKVAGQLSSKGKAEHPYIGIHMVTLNPELRQQLNETKELNFNIDQNEGVIVLRVVENSPAQKAGMQAGDIIETVAGNPVKTAADVQQGVETSAIGGNLEIEINRRGKQQTLTVQPGVFPSKTSD

Crispr_ID: NC_010296_34

• CRISPR_ID: NC_010296_34
• CRISPR_location: 5383058-5383144
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_34

Consensus_repeat	Method
TTACCGCGTTCTATCCCTCGTAACTCC	CRISPRCasFinder

spacers of NC_010296_34

>34.1|5383085|33|NC_010296|CRISPRCasFinder
CCAATTTCCTTGCCAATTTCCTTACCGATTTCC

CRISPR arrays and Neighbor proteins around NC_010296_34

CRISPR arrays

The CRISPR arrays of NC_010296_34

>merge|NC_010296|34|5383058-5383144|CRISPRCasFinder
TTACCGCGTTCTATCCCTCGTAACTCCCCAATTTCCTTGCCAATTTCCTTACCGATTTCCTTACCGCGTTCTATTCCTCGTAACTCC

>NC_010296|34|32|5383058-5383144|CRISPRCasFinder
TTACCGCGTTCTATCCCTCGTAACTCC	CCAATTTCCTTGCCAATTTCCTTACCGATTTCC
TTACCGCGTTCTATTCCTCGTAACTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012268052.1|5386865_5387861_-|DUF4351-domain-containing-protein	unknown	unknown	gnl|CDD|316753
NC_010296.1|WP_012268040.1|5369290_5370454_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|184450
NC_010296.1|WP_012268043.1|5373547_5374513_-|o-succinylbenzoate-synthase	unknown	unknown	gnl|CDD|235061
NC_010296.1|WP_125730803.1|5376102_5377280_+|IS630-like-element-ISMae25-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_164516991.1|5372079_5372220_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268048.1|5384357_5385401_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	unknown
NC_010296.1|WP_012268041.1|5370516_5371989_-|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl|CDD|235810
NC_010296.1|WP_012268051.1|5386433_5386670_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268044.1|5374841_5375885_-|IS630-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_002764487.1|5383874_5384222_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_012268039.1|5368106_5368925_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268042.1|5372198_5373572_-|2-succinylbenzoate--CoA-ligase	unknown	unknown	gnl|CDD|236019
NC_010296.1|WP_012268050.1|5385881_5386397_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002764487.1|5382363_5382711_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_012268055.1|5389028_5390036_-|DUF4351-domain-containing-protein	unknown	unknown	gnl|CDD|316753
NC_010296.1|WP_041804414.1|5390282_5390471_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268049.1|5385455_5385746_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_012268054.1|5388443_5388878_+|PIN-domain-containing-protein	unknown	unknown	gnl|CDD|366841
NC_010296.1|WP_002738971.1|5388240_5388453_+|DUF2281-domain-containing-protein	unknown	unknown	gnl|CDD|378366
NC_010296.1|WP_012268046.1|5381407_5382367_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012268052.1|5386865_5387861_-|DUF4351-domain-containing-protein	gnl|CDD|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	3.42303e-20
NC_010296.1|WP_002738971.1|5388240_5388453_+|DUF2281-domain-containing-protein	gnl|CDD|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	0.000628516
NC_010296.1|WP_002764487.1|5383874_5384222_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.25169e-15
NC_010296.1|WP_125730803.1|5376102_5377280_+|IS630-like-element-ISMae25-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.3303e-19
NC_010296.1|WP_012268041.1|5370516_5371989_-|NADH-quinone-oxidoreductase-subunit-M	gnl|CDD|235810	PRK06473, PRK06473, NADH-quinone oxidoreductase subunit M.	0
NC_010296.1|WP_012268055.1|5389028_5390036_-|DUF4351-domain-containing-protein	gnl|CDD|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	5.82825e-20
NC_010296.1|WP_012268044.1|5374841_5375885_-|IS630-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.13064e-22
NC_010296.1|WP_012268043.1|5373547_5374513_-|o-succinylbenzoate-synthase	gnl|CDD|235061	PRK02714, PRK02714, o-succinylbenzoate synthase.	0
NC_010296.1|WP_012268049.1|5385455_5385746_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	1.54702e-17
NC_010296.1|WP_012268042.1|5372198_5373572_-|2-succinylbenzoate--CoA-ligase	gnl|CDD|236019	PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.	0
NC_010296.1|WP_012268040.1|5369290_5370454_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl|CDD|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_010296.1|WP_002764487.1|5382363_5382711_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.25169e-15
NC_010296.1|WP_012268054.1|5388443_5388878_+|PIN-domain-containing-protein	gnl|CDD|366841	pfam01850, PIN, PIN domain.	2.55218e-09

Protein sequences

>NC_010296.1|WP_002764487.1|5382363_5382711_-|DUF4347-domain-containing-protein
MTSTLLPSFPAVDDVLFNFAQSDGLSQANRVDSVRNQRLTATVVFLDAGVSDYQSLQAGVIPEVATVILSPNQDGIEQISAFLPQNPQITTTTSIIKSVRYAIALHSLRVSKQLK
>NC_010296.1|WP_012268046.1|5381407_5382367_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MNPTTANYDEPWKEALSEYFEAFLYFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEERWTELEASSNPFAMIVMAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEEKTMPLMSNMELRGIERGKEIGVLEKSRDDIKTVLTVRFGQISSEIEEIIGKMTNPTILEELLKLAATANSLAEFKQSLAKINI
>NC_010296.1|WP_125730803.1|5376102_5377280_+|IS630-like-element-ISMae25-family-transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTPKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>NC_010296.1|WP_012268044.1|5374841_5375885_-|IS630-family-transposase
MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHKKICQLAGISPNTLLTYLRDYEEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPATINEAVYRIEELTGIKRSLTQVRKFLKSMGMKCLKVGSLPSKADPDEQEDYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELWSKIAALGITIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>NC_010296.1|WP_012268043.1|5373547_5374513_-|o-succinylbenzoate-synthase
MYFWQFRVYQRPLLHPLQTHHGLWQIREGIIIRLEAEDGRIGWGEIAPLPEFGSETLSAAILFCQSLENPLSINSIFSIPEQFPACQFAFESALEDLSIENKSRELEPRNYSYLLPTGAAVFPCLDDILATNQTNTYKWKIAVNSLPQELKLFEKLITRLPRNIKLRLDANGGLSIADSKIWLKIADESKIIEFIEQPLPPSQWLEMLQLSQDFTTGIALDESVANLRQIEECYQRGWRGIFVIKPAITGSIQGLRNLWKKYPLDLVFSSVLETNIGRKSALRLAQEYPKKERALGFGVQQWFNNSDPDWLEKLWTTSANN
>NC_010296.1|WP_012268042.1|5372198_5373572_-|2-succinylbenzoate--CoA-ligase
MDDISKQLAYLSQKDWLYGYNSQKFYQLYQSYSQQFIAADNPRLTILLAEVNPIKFLAIFLAAVRVKSCLFLANPDWKTNEWQQVFSLMQPDDIFGENIKVFNYNSPPVNPLTNSLMIPTGGTSGKIRFAIHNWLTLTASVKGFSEYFQVKQVNSFCLLPLYHVSGLMQFLRSFLTGGDFAVIPYHKIKEKRVNNLNLQDYFISLVPSQLQFFLENDPRWLANFKTVLLGGSPAWPSLLEKAREYNICLSPTYGMTETASQIVTLKPEDFRRGNNSSGQLLPHAQIKINPDNQKIIIEAKSLFLGYYPHLNQASYFETDDLGYLDKSGYLYIIGCDSQKIITGGENVYPLEVENAIRQTDLVKDVVVLGLPDSRWGQVIVAFYVPVNSQIGQASIQSLIKDKLVNYKLPKHWIKLPEIPKSPQGKINRTNLIKLAETFLTPSQTTDPNYSSYLNGEL
>NC_010296.1|WP_164516991.1|5372079_5372220_+|hypothetical-protein
MSQRLPLPEIRREKNSDFAAIYRVNRLAFGWENDANLGNPHNSPLR
>NC_010296.1|WP_012268041.1|5370516_5371989_-|NADH-quinone-oxidoreductase-subunit-M
MLNAFIWLPIIGAILIAYTPLEAKKVRGLALTLAVVLLLLNILLGWQFDPSNPQMQFTVNLPWINFLGFNYALGVDGLSFSLLFLNSILTIIALYASGTEVNRPKFYYSLLLLLNAGVAGAFLAQDLLLFFLFYELEIVPLYFLIAIWGGQRRGYAGMKFLLYTAISGFLVLISFLGLVWLTGADNFAYNPLLSNNLDVKTQLLLLIPLLIGLAIKIPIFPFHTWLPDAHVEASTPVSVLLAGILLKLGTYGLLRFGVGLFLDAWVTLAPWLATIAAISALYGASCAIAQKDMKKVVAYSSISHMAYILLAAAATTRLSITAAILQMISHGLISALLFLLVGVVYKKTGSRDVDYLRGLLNPERGLPITGMLMILAAMASAGIPGMVGFIAEFLVFRGSFPIFPIQTLLCLVASGLTAVYFLLMINRVFFGRLTPELSRIPRSTWPERFPEIALALFIIVLGLQPSWMIHWTENQASVLLTGTAISQRQS
>NC_010296.1|WP_012268040.1|5369290_5370454_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MSQKPIYLDCHATTPMEPQVLAAMLPYFTEHFGNASSINHVYGWTAEAAVKQARETIAAAINSSPEEIIFTSGATEANNLAIKGVAEAYFAKGRHIVTVVTEHRAVLDPCHYLEKLGFEVTILPVGADGLIDLELLEKSLRPDTILLSIMAANNEIGVIQPLAAIGAICRQYQVLFHTDAAQAIGKIPLDVEEMNIDLMSLTAHKVHGPKGIGALYVRRRNPRVRLAAQIQGGGQEKGLRSGTIFTPQIVGFAKAVELGIKAIEEDNSHLNQLKARLWEIISQLDRIYLNGHPSQRLAGNLNISIEGVDGAALLLGLQPIVALSSGSACSSSHTAPSHVLTALGRPESLAYASLRFGLSRFNTLEEIELVGEQVVLTVNSLRKAKNF
>NC_010296.1|WP_012268039.1|5368106_5368925_-|hypothetical-protein
MAKKSKAFSELLRLQKMSQGSEKPLKSFEKKLREKSLPFKEIVVSPSGEVTMSEVLEDFIEPYRESNETKGSMRTLLTIGIIAWNLALSPESKRQEMIDRVFNKDLLKGDKRLKADIQELIDELIARKNRYFSENKRMIVDFELKELGSEYHLSVASSLSPEFSESEFAFKVGDSVIVKQGVLDPDLGTDIGGWQGRIVIIERQSNLIGIEWDSITLKNIPSSVIDQCEVENLDWAQMCLFSTDVELTQPRDTEEDVAAIIEQIASNIVGAI
>NC_010296.1|WP_002764487.1|5383874_5384222_-|DUF4347-domain-containing-protein
MTSTLLPSFPAVDDVLFNFAQSDGLSQANRVDSVRNQRLTATVVFLDAGVSDYQSLQAGVIPEVATVILSPNQDGIEQISAFLPQNPQITTTTSIIKSVRYAIALHSLRVSKQLK
>NC_010296.1|WP_012268048.1|5384357_5385401_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MNPTTANYDEPWKEALSEYFEAFLYFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEESWSELEASSNPFAIIVMAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLMSNMELRGIERGKEIGKEIGKEIGELRGIERGKEIGKEIGKEIGALQKSRDAIKTVLTVRFGQISSEIEEIIGKMTNPTILEELLKLAATANSLAEFKQSLAKINI
>NC_010296.1|WP_012268049.1|5385455_5385746_-|DUF4347-domain-containing-protein
MTSILLPSFPAVDDVLFNFAQSDGLSQANRVDSVRNQRLTATVVFLDAGVSDYQSLQAGVIPEVATVILTPNQDGIEQISAFLPQNPQITTIHLYY
>NC_010296.1|WP_012268050.1|5385881_5386397_-|hypothetical-protein
MAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLVSNMELRGRKIGEEIGELRGIERGKEIGKEIGKEIGALQKSRDAIKTVLTVRFGQISSEIEEIIGKMTNPTILEELLKLAATANSLAEFKQSLAKINI
>NC_010296.1|WP_012268051.1|5386433_5386670_-|hypothetical-protein
MTSQTANYDEPWKEALSEYFEAFLCFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYSVISYQLSVISD
>NC_010296.1|WP_012268052.1|5386865_5387861_-|DUF4351-domain-containing-protein
MTNNIDHYRLFKELISTFFVEFIELFFPQLIDYLDRESITFLDKEVFTDVTEGERYESDLVAQVKFRGKESFFLIHVEAQESSRKWFNRRMFTYFARFHEKFVLPIYPIVIFSYSKPKREAISQYVVDFPDLKVLEFNYQVVQLNRLNWRDFLNQPNPVASALMAKMNIAEKERAKVKAECLRLLITLRLNPAKMELISGFIDTYLNLNPVEEIQFQQEISTFSQPVQEGVMQITTSWMRQGIELGIEQGIERGIEQGIEQGIEQGIEQGIEREKTLILRQIKRKLGEINPSLETKIMQLSIDDVEVLGEALFDFSTVEDLINWLNTLITL
>NC_010296.1|WP_002738971.1|5388240_5388453_+|DUF2281-domain-containing-protein
MSVADEIYKIVKSMPEDRANKILDFAKFLQAKPELEDKPLDFRDAAGLGQEMWQSIDVDAYIQQERSSWE
>NC_010296.1|WP_012268054.1|5388443_5388878_+|PIN-domain-containing-protein
MGIVLQPGNIVFLDTAPFIDFFEQHPIFFPYMEKLFYDVSIYQVKVITSMITFIEIVTHPARIGNQELVEQYRTYFTRSSQITLLPIDLSIAKEAIALPTQYTLKTPDAIQLGTAIAYSATYIITNDRQWKQLTHQNVLLVDEM
>NC_010296.1|WP_012268055.1|5389028_5390036_-|DUF4351-domain-containing-protein
MTNNIDHDRLFKELISTFFVEFIELFFPQLIDYLDRDSITFLDKEVFTDVTEGERYESDLVAQVKFRGKESFFLIHVEAQESSRKWFNRRMFTYFARFHEKFVLPIYPIVIFSYSKPKREAISQYVVDFPDLKVLEFNYQVVQLNRLNWRDFLNQPNPVASALMAKMNIAEKERAKVKAECLRLLITLRLDAARMQLISGFIDTYLNLNPVEEIQFQQEISTFSQPVQEGVMQITTSWMRQGIELGIEQGIERGIEQGIEQGIEQGIEQGIEQGIEREKTLILRQIKRKLGEINPSLETKIMQLSIDDVEVLGEALFDFSTVEDLINWLNTLITL
>NC_010296.1|WP_041804414.1|5390282_5390471_+|hypothetical-protein
MQQALLYSEKSVLATDCYDLTPLTYEERGMLPAKNPTENGFLEETRFLDQKLITFSLDLTLK

Crispr_ID: NC_010296_35

• CRISPR_ID: NC_010296_35
• CRISPR_location: 5384581-5384667
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_35

Consensus_repeat	Method
TTACCGCGTTCTATCCCTCGTAACTCC	CRISPRCasFinder

spacers of NC_010296_35

>35.1|5384608|33|NC_010296|CRISPRCasFinder
CCAATTTCCTTGCCAATTTCCTTACCGATTTCC

CRISPR arrays and Neighbor proteins around NC_010296_35

CRISPR arrays

The CRISPR arrays of NC_010296_35

>merge|NC_010296|35|5384581-5384667|CRISPRCasFinder
TTACCGCGTTCTATCCCTCGTAACTCCCCAATTTCCTTGCCAATTTCCTTACCGATTTCCTTACCGCGTTCTATTCCTCGTAACTCC

>NC_010296|35|33|5384581-5384667|CRISPRCasFinder
TTACCGCGTTCTATCCCTCGTAACTCC	CCAATTTCCTTGCCAATTTCCTTACCGATTTCC
TTACCGCGTTCTATTCCTCGTAACTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012268052.1|5386865_5387861_-|DUF4351-domain-containing-protein	unknown	unknown	gnl|CDD|316753
NC_010296.1|WP_002738971.1|5388240_5388453_+|DUF2281-domain-containing-protein	unknown	unknown	gnl|CDD|378366
NC_010296.1|WP_002764487.1|5383874_5384222_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_125730803.1|5376102_5377280_+|IS630-like-element-ISMae25-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_164516991.1|5372079_5372220_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268054.1|5388443_5388878_+|PIN-domain-containing-protein	unknown	unknown	gnl|CDD|366841
NC_010296.1|WP_012268041.1|5370516_5371989_-|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl|CDD|235810
NC_010296.1|WP_002756581.1|5392347_5393583_+|bifunctional-sterol-desaturase/short-chain-dehydrogenase	unknown	unknown	gnl|CDD|236016
NC_010296.1|WP_012268051.1|5386433_5386670_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268044.1|5374841_5375885_-|IS630-family-transposase	unknown	unknown	gnl|CDD|315923
NC_010296.1|WP_012268042.1|5372198_5373572_-|2-succinylbenzoate--CoA-ligase	unknown	unknown	gnl|CDD|236019
NC_010296.1|WP_012268049.1|5385455_5385746_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_041804414.1|5390282_5390471_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268050.1|5385881_5386397_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002764487.1|5382363_5382711_-|DUF4347-domain-containing-protein	unknown	unknown	gnl|CDD|372982
NC_010296.1|WP_012268055.1|5389028_5390036_-|DUF4351-domain-containing-protein	unknown	unknown	gnl|CDD|316753
NC_010296.1|WP_002796508.1|5390708_5392136_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|224136
NC_010296.1|WP_012268047.1|5382846_5383878_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	unknown
NC_010296.1|WP_012268043.1|5373547_5374513_-|o-succinylbenzoate-synthase	unknown	unknown	gnl|CDD|235061
NC_010296.1|WP_012268046.1|5381407_5382367_-|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012268052.1|5386865_5387861_-|DUF4351-domain-containing-protein	gnl|CDD|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	3.42303e-20
NC_010296.1|WP_002738971.1|5388240_5388453_+|DUF2281-domain-containing-protein	gnl|CDD|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	0.000628516
NC_010296.1|WP_002764487.1|5383874_5384222_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.25169e-15
NC_010296.1|WP_125730803.1|5376102_5377280_+|IS630-like-element-ISMae25-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.3303e-19
NC_010296.1|WP_012268041.1|5370516_5371989_-|NADH-quinone-oxidoreductase-subunit-M	gnl|CDD|235810	PRK06473, PRK06473, NADH-quinone oxidoreductase subunit M.	0
NC_010296.1|WP_002756581.1|5392347_5393583_+|bifunctional-sterol-desaturase/short-chain-dehydrogenase	gnl|CDD|236016	PRK07424, PRK07424, bifunctional sterol desaturase/short chain dehydrogenase; Validated.	0
NC_010296.1|WP_012268055.1|5389028_5390036_-|DUF4351-domain-containing-protein	gnl|CDD|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	5.82825e-20
NC_010296.1|WP_012268044.1|5374841_5375885_-|IS630-family-transposase	gnl|CDD|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.13064e-22
NC_010296.1|WP_012268043.1|5373547_5374513_-|o-succinylbenzoate-synthase	gnl|CDD|235061	PRK02714, PRK02714, o-succinylbenzoate synthase.	0
NC_010296.1|WP_012268049.1|5385455_5385746_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	1.54702e-17
NC_010296.1|WP_012268042.1|5372198_5373572_-|2-succinylbenzoate--CoA-ligase	gnl|CDD|236019	PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.	0
NC_010296.1|WP_002764487.1|5382363_5382711_-|DUF4347-domain-containing-protein	gnl|CDD|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.25169e-15
NC_010296.1|WP_002796508.1|5390708_5392136_-|glycosyltransferase-family-2-protein	gnl|CDD|224136	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane].	1.98002e-58
NC_010296.1|WP_012268054.1|5388443_5388878_+|PIN-domain-containing-protein	gnl|CDD|366841	pfam01850, PIN, PIN domain.	2.55218e-09

Protein sequences

>NC_010296.1|WP_002764487.1|5383874_5384222_-|DUF4347-domain-containing-protein
MTSTLLPSFPAVDDVLFNFAQSDGLSQANRVDSVRNQRLTATVVFLDAGVSDYQSLQAGVIPEVATVILSPNQDGIEQISAFLPQNPQITTTTSIIKSVRYAIALHSLRVSKQLK
>NC_010296.1|WP_012268047.1|5382846_5383878_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MNPTTANYDEPWKEALSEYFEAFLCFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEERWSELEASSNPFAIIVMAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLMSNMELRGIERGKEIGKEIGKEIGELRGIERGKEIGKEIGALENARDFVKTVLQARLGEVPLDVEQYLNKVSVLSTLQGIVKLAATANSLAEFKQSLAKINI
>NC_010296.1|WP_002764487.1|5382363_5382711_-|DUF4347-domain-containing-protein
MTSTLLPSFPAVDDVLFNFAQSDGLSQANRVDSVRNQRLTATVVFLDAGVSDYQSLQAGVIPEVATVILSPNQDGIEQISAFLPQNPQITTTTSIIKSVRYAIALHSLRVSKQLK
>NC_010296.1|WP_012268046.1|5381407_5382367_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MNPTTANYDEPWKEALSEYFEAFLYFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYKVWLLRGEEVWILIHIEIQSQYEENFPQRMYIYNYRAFDLYQKPVISLAILGDERVNWRPDSYNYTIAGCEVSLKFPTVKLLDYEERWTELEASSNPFAMIVMAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEEKTMPLMSNMELRGIERGKEIGVLEKSRDDIKTVLTVRFGQISSEIEEIIGKMTNPTILEELLKLAATANSLAEFKQSLAKINI
>NC_010296.1|WP_125730803.1|5376102_5377280_+|IS630-like-element-ISMae25-family-transposase
MGRGRRDKVNLTGEQRENLEQISRNGYAPAKKILHARILLMCDEGEQAKRKWTDEEIGEALEVHRNTVGRIRQRFLQKGEKPALERKSRKTPPTPAKVDGAAAAQIIALCCSEPPSGRAEWTIRLLTSELKQRQIITEISSPTVWRTPKKNQLRPWKTQRYCIPEQDLARFVAQMEVVLDLYGTQPSEEEPLIAMDEASKQLLGEVYPPIPMQPGQDKKEDYHYSREGVQALFMFFDPHRGWRRVSNRDSRTRIDWAEEIRQLLDVDYPKARKVKLVCDNLNTHNIASLYEAFPAPVAHRLARRLEIYYTPRNGSWLNVAETELSVLSRQCLDRRISSKEELKREIETWQKERNQTASTVIWTFTTSDARVKLKHLYPVFEEEESGESIAPN
>NC_010296.1|WP_012268044.1|5374841_5375885_-|IS630-family-transposase
MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHKKICQLAGISPNTLLTYLRDYEEGGIEKLKEINFYRPKSELESQKETLKKYFEKNPPATINEAVYRIEELTGIKRSLTQVRKFLKSMGMKCLKVGSLPSKADPDEQEDYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSGRKRFNVLGALNAITHEVILVTNDTYITATQVCELWSKIAALGITIPITLVLDNARYQKCKIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYGKYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV
>NC_010296.1|WP_012268043.1|5373547_5374513_-|o-succinylbenzoate-synthase
MYFWQFRVYQRPLLHPLQTHHGLWQIREGIIIRLEAEDGRIGWGEIAPLPEFGSETLSAAILFCQSLENPLSINSIFSIPEQFPACQFAFESALEDLSIENKSRELEPRNYSYLLPTGAAVFPCLDDILATNQTNTYKWKIAVNSLPQELKLFEKLITRLPRNIKLRLDANGGLSIADSKIWLKIADESKIIEFIEQPLPPSQWLEMLQLSQDFTTGIALDESVANLRQIEECYQRGWRGIFVIKPAITGSIQGLRNLWKKYPLDLVFSSVLETNIGRKSALRLAQEYPKKERALGFGVQQWFNNSDPDWLEKLWTTSANN
>NC_010296.1|WP_012268042.1|5372198_5373572_-|2-succinylbenzoate--CoA-ligase
MDDISKQLAYLSQKDWLYGYNSQKFYQLYQSYSQQFIAADNPRLTILLAEVNPIKFLAIFLAAVRVKSCLFLANPDWKTNEWQQVFSLMQPDDIFGENIKVFNYNSPPVNPLTNSLMIPTGGTSGKIRFAIHNWLTLTASVKGFSEYFQVKQVNSFCLLPLYHVSGLMQFLRSFLTGGDFAVIPYHKIKEKRVNNLNLQDYFISLVPSQLQFFLENDPRWLANFKTVLLGGSPAWPSLLEKAREYNICLSPTYGMTETASQIVTLKPEDFRRGNNSSGQLLPHAQIKINPDNQKIIIEAKSLFLGYYPHLNQASYFETDDLGYLDKSGYLYIIGCDSQKIITGGENVYPLEVENAIRQTDLVKDVVVLGLPDSRWGQVIVAFYVPVNSQIGQASIQSLIKDKLVNYKLPKHWIKLPEIPKSPQGKINRTNLIKLAETFLTPSQTTDPNYSSYLNGEL
>NC_010296.1|WP_164516991.1|5372079_5372220_+|hypothetical-protein
MSQRLPLPEIRREKNSDFAAIYRVNRLAFGWENDANLGNPHNSPLR
>NC_010296.1|WP_012268041.1|5370516_5371989_-|NADH-quinone-oxidoreductase-subunit-M
MLNAFIWLPIIGAILIAYTPLEAKKVRGLALTLAVVLLLLNILLGWQFDPSNPQMQFTVNLPWINFLGFNYALGVDGLSFSLLFLNSILTIIALYASGTEVNRPKFYYSLLLLLNAGVAGAFLAQDLLLFFLFYELEIVPLYFLIAIWGGQRRGYAGMKFLLYTAISGFLVLISFLGLVWLTGADNFAYNPLLSNNLDVKTQLLLLIPLLIGLAIKIPIFPFHTWLPDAHVEASTPVSVLLAGILLKLGTYGLLRFGVGLFLDAWVTLAPWLATIAAISALYGASCAIAQKDMKKVVAYSSISHMAYILLAAAATTRLSITAAILQMISHGLISALLFLLVGVVYKKTGSRDVDYLRGLLNPERGLPITGMLMILAAMASAGIPGMVGFIAEFLVFRGSFPIFPIQTLLCLVASGLTAVYFLLMINRVFFGRLTPELSRIPRSTWPERFPEIALALFIIVLGLQPSWMIHWTENQASVLLTGTAISQRQS
>NC_010296.1|WP_012268049.1|5385455_5385746_-|DUF4347-domain-containing-protein
MTSILLPSFPAVDDVLFNFAQSDGLSQANRVDSVRNQRLTATVVFLDAGVSDYQSLQAGVIPEVATVILTPNQDGIEQISAFLPQNPQITTIHLYY
>NC_010296.1|WP_012268050.1|5385881_5386397_-|hypothetical-protein
MAHLKTKATTGKLPQREQWKWKLIRGLYEKEFEREQIIKLFEIIDNMMTLSPELQSSLESKIKQFEEERTMPLVSNMELRGRKIGEEIGELRGIERGKEIGKEIGKEIGALQKSRDAIKTVLTVRFGQISSEIEEIIGKMTNPTILEELLKLAATANSLAEFKQSLAKINI
>NC_010296.1|WP_012268051.1|5386433_5386670_-|hypothetical-protein
MTSQTANYDEPWKEALSEYFEAFLCFFFPEVHQLIDWTKIPESLEKELKRITASAKTKKRFADKLYSVISYQLSVISD
>NC_010296.1|WP_012268052.1|5386865_5387861_-|DUF4351-domain-containing-protein
MTNNIDHYRLFKELISTFFVEFIELFFPQLIDYLDRESITFLDKEVFTDVTEGERYESDLVAQVKFRGKESFFLIHVEAQESSRKWFNRRMFTYFARFHEKFVLPIYPIVIFSYSKPKREAISQYVVDFPDLKVLEFNYQVVQLNRLNWRDFLNQPNPVASALMAKMNIAEKERAKVKAECLRLLITLRLNPAKMELISGFIDTYLNLNPVEEIQFQQEISTFSQPVQEGVMQITTSWMRQGIELGIEQGIERGIEQGIEQGIEQGIEQGIEREKTLILRQIKRKLGEINPSLETKIMQLSIDDVEVLGEALFDFSTVEDLINWLNTLITL
>NC_010296.1|WP_002738971.1|5388240_5388453_+|DUF2281-domain-containing-protein
MSVADEIYKIVKSMPEDRANKILDFAKFLQAKPELEDKPLDFRDAAGLGQEMWQSIDVDAYIQQERSSWE
>NC_010296.1|WP_012268054.1|5388443_5388878_+|PIN-domain-containing-protein
MGIVLQPGNIVFLDTAPFIDFFEQHPIFFPYMEKLFYDVSIYQVKVITSMITFIEIVTHPARIGNQELVEQYRTYFTRSSQITLLPIDLSIAKEAIALPTQYTLKTPDAIQLGTAIAYSATYIITNDRQWKQLTHQNVLLVDEM
>NC_010296.1|WP_012268055.1|5389028_5390036_-|DUF4351-domain-containing-protein
MTNNIDHDRLFKELISTFFVEFIELFFPQLIDYLDRDSITFLDKEVFTDVTEGERYESDLVAQVKFRGKESFFLIHVEAQESSRKWFNRRMFTYFARFHEKFVLPIYPIVIFSYSKPKREAISQYVVDFPDLKVLEFNYQVVQLNRLNWRDFLNQPNPVASALMAKMNIAEKERAKVKAECLRLLITLRLDAARMQLISGFIDTYLNLNPVEEIQFQQEISTFSQPVQEGVMQITTSWMRQGIELGIEQGIERGIEQGIEQGIEQGIEQGIEQGIEREKTLILRQIKRKLGEINPSLETKIMQLSIDDVEVLGEALFDFSTVEDLINWLNTLITL
>NC_010296.1|WP_041804414.1|5390282_5390471_+|hypothetical-protein
MQQALLYSEKSVLATDCYDLTPLTYEERGMLPAKNPTENGFLEETRFLDQKLITFSLDLTLK
>NC_010296.1|WP_002796508.1|5390708_5392136_-|glycosyltransferase-family-2-protein
MAENYWSREDDNEELDPIGSLLSDWSDPEDEEDEFRSEIFQGRSGRRQKAAFSLMAIWTIIIGLHWLSWGYWAIIALTMVLSGQALRLLFTKPETPPIPLLDKDLASVPRVSLLVAAKNEETVITKLVNYLCHLDYPQDKLEVWIVDDYSTDNTGAILDRLALEYPQLQILHRPANAGGGKSGALNQVLSLTNGEIIGVFDADAGLSADLLRHVVPMFDDREVGAVQVRKAIANAAENFWTKGQAVEMIFDSCFQQQRIAVGGIGELRGNGQFVRRSALNRCGGWNEQTITDDLDLTIRLHIDNWKINILNFPAVAEEGVTTAIALWHQRNRWAEGGFQRYLDYWKAILKSPMPWPKKFDLIAFLIVQYILPAAAIPDLLITITRHQAPILTPLTGLALSLSLWGMVTGLIRVNTGKKFTFALGLDILAQTIRGMIYMMHWFIIIPSVSLRMALRPKRLKWVKTVHLGEHLRAEV
>NC_010296.1|WP_002756581.1|5392347_5393583_+|bifunctional-sterol-desaturase/short-chain-dehydrogenase
MSNLLLCVGLICGSIIWVEIVRDSYHALAHHWQPLYRLHVWHHRVFRPDLSVMSEEIYRRAHWYNDVPEALVMLAASVLPVLLAYSWGFDRPWLGWLGSLYTLTFLSTAIGRGLGIANLEELTDLTHRPGQFESLPAQWRVNRTYHWRHHFDNQKAYYCGTFTFMDKLMGTALSLKGKTIAITGANGTLGRSLLKYLQLKGAKVIALTSRENAIAIEINGESVPVKTVKWQIGEETQLEDLFRSVDILILNHGVNVHGQRTPEAIELAYQVNTFSVWRLMELFFKTVRTNEQIARKEVWVNTSEAEVNPAFSPLYELSKRAIGDMITLRRLDAPCVVRKLILGPFKSNLNPLGIMSADWVAKQIIKAVQRDSRNIIITINPLTFITFPIKEFSVSTYLKLFTRSPKNRENP

Crispr_ID: NC_010296_36

• CRISPR_ID: NC_010296_36
• CRISPR_location: 5470868-5470989
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_36

Consensus_repeat	Method
GGTAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAG	CRISPRCasFinder

spacers of NC_010296_36

>36.1|5470907|44|NC_010296|CRISPRCasFinder
GCTGACAGGGGGGATCAAACCCCCTCAAGGTAAGGTTGATTGTC

CRISPR arrays and Neighbor proteins around NC_010296_36

CRISPR arrays

The CRISPR arrays of NC_010296_36

>merge|NC_010296|36|5470868-5470989|CRISPRCasFinder
GGTAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAGGCTGACAGGGGGGATCAAACCCCCTCAAGGTAAGGTTGATTGTCGGTAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAG

>NC_010296|36|34|5470868-5470989|CRISPRCasFinder
GGTAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAG	GCTGACAGGGGGGATCAAACCCCCTCAAGGTAAGGTTGATTGTC
GGTAGGTGTTAAAAACTGTCAGACACCCCCCTTATCAAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_158303567.1|5466031_5466172_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268120.1|5474029_5474659_-|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl|CDD|234873
NC_010296.1|WP_012268122.1|5476545_5477229_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268115.1|5468429_5469161_-|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|99749
NC_010296.1|WP_012268117.1|5469967_5470738_-|class-II-glutamine-amidotransferase	unknown	unknown	gnl|CDD|372525
NC_010296.1|WP_012268105.1|5457789_5458323_-|hypothetical-protein	unknown	unknown	gnl|CDD|227278
NC_010296.1|WP_012268119.1|5472890_5474000_+|threonine-synthase	unknown	unknown	gnl|CDD|236013
NC_010296.1|WP_002734319.1|5460867_5461113_+|photosystem-I-iron-sulfur-center-protein-PsaC	unknown	unknown	gnl|CDD|177005
NC_010296.1|WP_012268127.1|5479481_5480654_+|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|133022
NC_010296.1|WP_012268121.1|5474865_5476380_-|TonB-family-protein	unknown	unknown	gnl|CDD|237864
NC_010296.1|WP_012268104.1|5457225_5457750_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NC_010296.1|WP_158303568.1|5476387_5476543_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002756687.1|5477730_5477943_+|high-light-inducible-protein	unknown	unknown	gnl|CDD|177653
NC_010296.1|WP_002756689.1|5478908_5479121_+|hypothetical-protein	unknown	unknown	gnl|CDD|212463
NC_010296.1|WP_012268108.1|5461628_5462720_-|ISAs1-family-transposase	unknown	unknown	gnl|CDD|379382
NC_010296.1|WP_012263965.1|5471101_5472511_+|IS4-family-transposase	unknown	unknown	gnl|CDD|373239
NC_010296.1|WP_012268125.1|5478001_5478847_-|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|178151
NC_010296.1|WP_012268107.1|5458645_5460616_-|acetate--CoA-ligase	unknown	unknown	gnl|CDD|234677
NC_010296.1|WP_012268110.1|5464230_5465889_-|IS1634-family-transposase	unknown	unknown	gnl|CDD|379471
NC_010296.1|WP_041804419.1|5469236_5469965_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224058

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012268120.1|5474029_5474659_-|imidazoleglycerol-phosphate-dehydratase-HisB	gnl|CDD|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	2.61898e-129
NC_010296.1|WP_012268108.1|5461628_5462720_-|ISAs1-family-transposase	gnl|CDD|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	1.27456e-24
NC_010296.1|WP_012268115.1|5468429_5469161_-|Uma2-family-endonuclease	gnl|CDD|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.61054e-14
NC_010296.1|WP_012268105.1|5457789_5458323_-|hypothetical-protein	gnl|CDD|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.35363e-06
NC_010296.1|WP_002734319.1|5460867_5461113_+|photosystem-I-iron-sulfur-center-protein-PsaC	gnl|CDD|177005	CHL00065, psaC, photosystem I subunit VII.	2.22262e-53
NC_010296.1|WP_012268117.1|5469967_5470738_-|class-II-glutamine-amidotransferase	gnl|CDD|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	5.68115e-150
NC_010296.1|WP_012268119.1|5472890_5474000_+|threonine-synthase	gnl|CDD|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NC_010296.1|WP_012268121.1|5474865_5476380_-|TonB-family-protein	gnl|CDD|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	3.57986e-07
NC_010296.1|WP_012268104.1|5457225_5457750_-|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.92287e-33
NC_010296.1|WP_002756687.1|5477730_5477943_+|high-light-inducible-protein	gnl|CDD|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	3.71017e-05
NC_010296.1|WP_002756689.1|5478908_5479121_+|hypothetical-protein	gnl|CDD|212463	cd01716, Hfq, bacterial Hfq-like. Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotropic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.	5.20869e-08
NC_010296.1|WP_012268127.1|5479481_5480654_+|glycosyltransferase-family-2-protein	gnl|CDD|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.59285e-48
NC_010296.1|WP_012263965.1|5471101_5472511_+|IS4-family-transposase	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	2.74384e-20
NC_010296.1|WP_012268125.1|5478001_5478847_-|diaminopimelate-epimerase	gnl|CDD|178151	PLN02536, PLN02536, diaminopimelate epimerase.	3.18176e-150
NC_010296.1|WP_012268107.1|5458645_5460616_-|acetate--CoA-ligase	gnl|CDD|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NC_010296.1|WP_012268110.1|5464230_5465889_-|IS1634-family-transposase	gnl|CDD|379471	pfam14104, DUF4277, Domain of unknown function (DUF4277). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 110 amino acids in length. There is a conserved NGLGF sequence motif.	9.61303e-54
NC_010296.1|WP_041804419.1|5469236_5469965_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	9.37056e-65

Protein sequences

>NC_010296.1|WP_012268117.1|5469967_5470738_-|class-II-glutamine-amidotransferase
MCQLLGMNCNVPTDICFSFEGFCARGGKTDEHRDGWGIAFFEGLGCRTFIDVKPSIASPIAELIKNYPIHSTNVIAHIRKATQGEIKLENCHPFRRELWGKYWVFAHNGNLENFSPAAGDFYQPVGETDSEKAFCLILNTLRETFPQGKPSLEQLYQVLKTITNSIACQGIFNYLLSDGEHFFAYCSTKLSYIIRQYPFAAAHLIDEDVSVDFQALARPGDQVAIIATTPLTDNEVWTTINSGELLVFQEGAAILS
>NC_010296.1|WP_041804419.1|5469236_5469965_+|ATP-binding-cassette-domain-containing-protein
MILELQQVNLAIRRGSAYLLEDITFGIKQGEKLAIVGASGAGKTTLLRLLNRLQEPSTGNIYFQGKSIKEIPVISLRQQIVLLPQESKLLGMTVRDALAYPLQLKKFTPAEINQRIDHWTSLLKIPQQWFERGELELSLGQRQLVAITRALLLEPSILLLDEPTSALDTGTATRLLEVLNNQSSMTIIMVNHQLDFLGEFAERVIYLEAGKIGSDCLAHQLDWLGLKTQLIDLEKSRQSDHW
>NC_010296.1|WP_012268115.1|5468429_5469161_-|Uma2-family-endonuclease
MVSQVNKTEIIYPESDGKPMADNTKQFNWIVTIKQNLDWLYIDDPQVFVAGDLLWYPVQGQPKIAAAPDTMVVFGRPKGDRGSYKQWQEDNLAPQVVFEILSPSNTSIEMAKKLLFYDRYGVQEYYVYDPDDNSLEAWQRIGDSLDSVSEVNNWVSPRLGIRFDLTDELKIYRPDGTQFSSYSEINQLLEQEKQRAENERQRAENERQRAENERQRAEQVNQQLVEMEAKLQKYRQLFGELPN
>NC_010296.1|WP_158303567.1|5466031_5466172_+|hypothetical-protein
MTVEGAECGIKVNLIPPESQGSKLKSKDDLPSQSYQVQAGSISPLQ
>NC_010296.1|WP_012268110.1|5464230_5465889_-|IS1634-family-transposase
MNQSTEIEVKNLDHLGLVAGIIDEIGIVEIINEQVSIERGEIVTAGQVVKAIILNGLGFVSRALYLFPQFFEDKATEHLLGEGIEPKHLNDDKIGRVMDKLYQLNVSVIFLLISLAAVKKFGVATENSHLDSTSLSVEGEYNKEYPTVEILKSGAVGEEIETRQQPIKITYGYSRDRRPDLKQFMIDLIVSGDGDVPLFLKVGDGNEADKAVFGQIAREFKKQVDFDSLIVGDSALYSKENLKLMKEMRWLSRVPLSIKEAQELVDSISEKELTDSEIPGYSWRETISNYGGIEQRWLLVESQARQESDLKKLEKKIEQEKNSAQEKIRQLSRREFENRAVALAIAKGLSDSLKSHQLTEIKVNLIPPESQGSKLKSKDDLPSQSYQVQAKLELNLTAIERLKKRAGRFVLATNDLEKQRLSSEDILKKYKGQQAPERGFSFLKDPCFFAHSVFLKSPHRIEVMAMLMGLCLLVYTIGQRQLRLSLKQQETGLKNPLGKLTDRPTLRWIFQGFQGIHLVRIQDNQKISNLTDERRNILRFFPKPCQEYYLLS
>NC_010296.1|WP_012268108.1|5461628_5462720_-|ISAs1-family-transposase
MLSLIEKLKQVKDFRKDKGKRHPLWIVLVVIILGTMLGYSGYRELGEFAKNNRHRLSQEFNIIPERVPSYSTIRRVMMGVEWQILLKMFNEWALEEYGQRDDINWLGMDGKSLKNTLKNPNNEQQNFIMFVSLFSQESGLVLHLKRIENKKGSEIDEGQAIIEDCSLQNKVFTGDALHCQKKTISLIAKTKNDYVITVKGNQKNLYKRIQDLSNSSKPESCFLEQDNSHGRKISRKIEVFKVRKNERQGFENLRRVIKVERKGSRGDKTYEETAYYISSLTESAQVFAKIIRGHWKIENQLHWVKDVIFEEDKSEISDFQAASNWSILTTIGLNLFRGLGFLSITEGQRWLAERWEKLIVLST
>NC_010296.1|WP_002734319.1|5460867_5461113_+|photosystem-I-iron-sulfur-center-protein-PsaC
MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAAQIASSPRTEDCIGCKRCETACPTDFLSIRVYLGAETTRSMGLAY
>NC_010296.1|WP_012268107.1|5458645_5460616_-|acetate--CoA-ligase
MTEIAIESILQENRLFPPSAEFAQNATIKSFEEYQQLYAKAKADPSAFWAQLAEKELHWFEKWSEILDWQPPFAKWFVNGKINICYNCIDRHLTTWRRNKAAIIWEGEPGDSRTITYEQLHREVCQFANALKELGVKKGDVVGIYMPMIPEAAIAMLACARIGAPHSVVFGGFSADALRDRLNDAAAKVVITADGGFRKDKVVALKEQVDLALADNSAPSVEKVLVVQRSKEPINMVADRDYWWHDLQKQVSANCPAEPMDSEDMLFILYTSGSTGKPKGVVHTTGGYNLYTHVTCKWIFDLKDTDVYWCTADVGWITGHSYIVYGPLSNGATTVMYEGVPRPSNLGCFWDVIEKYRVNIFYTAPTAIRAFIKMGEDIPNSRDLSSLRLLGTVGEPINPEAWMWYHRVIGKEKCPIVDTWWQTETGGIMITPLPGAIATKPGSATLPFPGIIAEVVDLEGNPTHANEGGYLVVKHPWPGMMRTVYKNPDRFRNTYWEHIAPKDGQYLYFAGDGSRQDEDGYFWVMGRVDDVMSVSGHRLGTMEIESALVSHPAVAEAAVVGRPDEIKGEEVYAFVTLEGHYEASPELAQALKDHVVKEIGIIARPGEIRFTDVLPKTRSGKIMRRLLRTLASGQEISGDTSTLEDRSVLDKLRQGA
>NC_010296.1|WP_012268105.1|5457789_5458323_-|hypothetical-protein
MTTTTTTNNDLKRLEDLILNGQKIIEHRFNEIDNRLTTMDNRLTTMDNRLTTMETRLIDVDNRLATVDNRLTTMDNRLTTVETRLIEVDNRLKVIENGQAEMKADVKNLQKDTTDLKIELTEVKGDIKTLDSKFDDMNKRLEKVEGTQKNQIWTLITVLSGSLLAVGFRSFFIDNNP
>NC_010296.1|WP_012268104.1|5457225_5457750_-|GNAT-family-N-acetyltransferase
MKSDRLILRPWQLPADKESFFQIYQNSEVTDFLPRIRQLATDIESLNAHFSERLPTIRNQGNGSDWWAMIDRKNNQIIGSIILQNLPDNHGYPTPDSEIGWHLRCDYWGQGYMTEAAKVILEYGLITLQLPIIYAVVNPDNYRSIRVTERLGMQSMGLTNKYYDTEALLFSIEA
>NC_010296.1|WP_012263965.1|5471101_5472511_+|IS4-family-transposase
MEKWAAQELQYADLGDTRRKKRLISIVENLASQPSTSVPQASGNLAAASATYDFWNSPYFHPSDIIAAQAKSTVERIKEHPIVLAVQDTTSLDFTTQKAKKGMGYLDYKKSFGLKVHTTLGVSPVGIPLGLINQYVWAREEKNLGIAKQRKKRETQEKESQRWLDSLSETQQQIPEDIQVVTIGDCEADIFDLFAQSRSPNSHLLIRGTHNRKVNYLEDKQRSGHSEPKYLHQSIREIKACGTLDVQVKRNPNHEARLAKLTVRFASFEIQVPSHHSKATPRQPVKLQVILAEEENPHSGVNPISWLLLTSLDISSFESAITCVRWYSYRWLIERYHFVLKSGCGLEKLQLETGRRIEMALATYSIVAWRLLWLTYQARLHGEESCESFLEEHEWQSLCATIHKKSPPPEKPPSFREAVRMIASLGGFLGRKGDGEPGVKTIWLGLRRLHDISQTWKLSHQISPPIEPP
>NC_010296.1|WP_012268119.1|5472890_5474000_+|threonine-synthase
MTTISRSIPQSPTKSSSIGGWRGLIEEYRQFLPVSSNTPVITLLEGNTPLIPAPYLSAQIGRDVKVFVKYDGLNPTGSFKDRGMTMAISKAKEEGAKAVICASTGNTSAAAAAYARRAGMRAFVIIPDGYVALGKLAQALLYGAEVIAINGNFDDALKIVRQLSENYPVTLVNSVNPYRLEGQKTAAFEIVDVLGNAPDWLCIPVGNAGNISAYWMGFCQYHQIGKCDRLPKMIGFQAAGAAPFISKQPVDHPETLATAIRIGNPANWEKAWAASHASQGQFHAVSDEEILAAYRILGGQEGVFCEPASAASVAGLLKVHQQVPDGATVVCVLTGNGLKDPDSAVKHSNNQLKSGIAPELTQVAQIMGF
>NC_010296.1|WP_012268120.1|5474029_5474659_-|imidazoleglycerol-phosphate-dehydratase-HisB
MISTSQIPDSFVSPCRRASVSRTTKETDVQVTIDLDGSGNCRAQTGIPFLDHMLQQIASHAAIDLDVRATGDIEIDDHHTNEDVGITLGQALLQALGDKKGIVRFGHFVAPLDEALVQVALDFSGRPHLSYGLEIPTQRVGTYDTQLVREFFVALVNHSQMTLHIRQLDGINSHHIIEATFKAFARAMSMAIAIDPRRAGIIPSSKGVL
>NC_010296.1|WP_012268121.1|5474865_5476380_-|TonB-family-protein
MTSSYFGLETEENKLINSNNLSFAASLGIHGLILAIILPNFLNNPAQEPKKDLRNVNLIELNSLEQSRLPSLDSSLSSLPELPNPNLSSSSLPPLPPMDGIHNSTLPPLPSVSSLPPLPSLPALPPLSSLPSVNIYSPPVASIPSLGRLPIPRNFPTSTPSLPSPPAVPTLPDNDNLPRETNNNRIPPYFDPYQDNLTLDRLRNSPLSASQQAQQQLNNSLARTPEPNGQSPLDEQRRQQLMWEMRERLRSLEADKSNTSNEEAMRNNLAWLARVQKTNPNALNELNQPNQGSRGITTVNLTGNYPATACSRQLAGTAVYGVTVDAQGRLSSEPQLIKSAGFPIFNQQAAREVSLTRFNNPSGASRSYHVRVSFAPNPEVCRGAIANPPKPEGSNLNTRNSPPVTPAIETPLRPNQPPQPAVSPQPDNVKPPETTGPNPPQTQPEPPKEAIIEQKAPETPPQTPALNQPEGSPASPPTSQNPQPLSEEALPPGPPAEAKTEPES
>NC_010296.1|WP_158303568.1|5476387_5476543_-|hypothetical-protein
MAEKVFRWWQGVGCGVWGGGVLTPINSPPSRKKIALTIRIELTFPLQALLN
>NC_010296.1|WP_012268122.1|5476545_5477229_-|hypothetical-protein
MAEISPEINLMQIATILNQYRFEMRGYKAQELIERWLPIYSLNWIRMAILEALYQGRYKVISVEEILKIWHRRGHPTFHFTGEFERLVCKNLLDSQLDGKKPAVIPKREQINIPSPTLEQPCPEPEAGKTDNNGTVATSKDSLLNLETSLFNDPRKGMSNVEELFSQLTPETPKFPELESVPKSPNSPGTRENFPANFKPAIDEFIPLLDPSELYPKLKAVARSPHK
>NC_010296.1|WP_002756687.1|5477730_5477943_+|high-light-inducible-protein
MTARGYTTEEQGRLNNFAVEPKMYVDSSSSLGFTKNAEKLNGRLAMIGFVSLLAIELLTGKGIIAWITSL
>NC_010296.1|WP_012268125.1|5478001_5478847_-|diaminopimelate-epimerase
MKIPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLVTCVSMGNPHCVTFVGDLASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVAALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI
>NC_010296.1|WP_002756689.1|5478908_5479121_+|hypothetical-protein
MSQFDPGLPSIKQVQSYIQEKREVEIKLSTDDLLVGRILWQDVNCLYLVDHYDKPTLIWQQSLVYLRPKA
>NC_010296.1|WP_012268127.1|5479481_5480654_+|glycosyltransferase-family-2-protein
MLENQVRADAASNEQIPTLELSIIMPCLNEAETLATCIGKARDYLEQHKIAGEVLIADNGSSDGSQEIATNSGARVVPIPERGYGSALRGGIAAAKGQYIIMGDADDSYDFTNLSPFLEKLRQGYDLVMGNRFQGGIKPGAMPVLHKYLGNPVLTWLGRLFFGSPCGDFHCGLRGFSKQAIEQLNLRTTGMEFASEMVVKASLYGLKITEVPTTLSPDGRSRPPHLKTWRDGWRHLRFLLMYSPRWLFLYPGLALMFLGLIATIWFMTQPRVHTLLYSATALIIGFQIVSFAIFTKAFAISEGLLPEDRKLRRFLRYINLEVGLIIGVILLVLGMGGSLYALYIWNARLYGALDPAVTMRIVIPSVTALALGVQVVFSSFFLSVLQLKRK

Crispr_ID: NC_010296_37

• CRISPR_ID: NC_010296_37
• CRISPR_location: 5490949-5491051
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010296_37

Consensus_repeat	Method
TATGAAACGTGCTGTCAAGCGGATC	CRISPRCasFinder

spacers of NC_010296_37

>37.1|5490974|53|NC_010296|CRISPRCasFinder
GGTAGGATTCTTGGAGTCCTAGTTATCGTAGTATTTTCGGCGTTTATCTGGTT

CRISPR arrays and Neighbor proteins around NC_010296_37

CRISPR arrays

The CRISPR arrays of NC_010296_37

>merge|NC_010296|37|5490949-5491051|CRISPRCasFinder
TATGAAACGTGCTGTCAAGCGGATCGGTAGGATTCTTGGAGTCCTAGTTATCGTAGTATTTTCGGCGTTTATCTGGTTTATGAAACGTGCTGTCAAGTGGATC

>NC_010296|37|35|5490949-5491051|CRISPRCasFinder
TATGAAACGTGCTGTCAAGCGGATC	GGTAGGATTCTTGGAGTCCTAGTTATCGTAGTATTTTCGGCGTTTATCTGGTT
TATGAAACGTGCTGTCAAGTGGATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_002796580.1|5489598_5490375_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_002756734.1|5496130_5496874_-|DUF561-domain-containing-protein	unknown	unknown	gnl|CDD|113257
NC_010296.1|WP_012268141.1|5499006_5500155_-|sulfotransferase	unknown	unknown	gnl|CDD|379204
NC_010296.1|WP_002756735.1|5496966_5497134_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041805028.1|5500191_5500812_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268137.1|5492875_5493124_+|DUF29-domain-containing-protein	unknown	unknown	gnl|CDD|366774
NC_010296.1|WP_041804423.1|5484623_5486171_-|glycosyltransferase-family-39-protein	unknown	unknown	gnl|CDD|379080
NC_010296.1|WP_012268129.1|5483032_5483998_+|glycosyltransferase	unknown	unknown	gnl|CDD|133055
NC_010296.1|WP_012268138.1|5493287_5494235_-|PRC-barrel-domain-containing-protein	unknown	unknown	gnl|CDD|368352
NC_010296.1|WP_002777513.1|5492559_5492817_+|BrnA-antitoxin-family-protein	unknown	unknown	gnl|CDD|373040
NC_010296.1|WP_041805027.1|5497325_5498678_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl|CDD|184646
NC_010296.1|WP_004158845.1|5480713_5481331_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|369777
NC_010296.1|WP_012268132.1|5486293_5486593_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804421.1|5484015_5484426_+|GtrA-family-protein	unknown	unknown	gnl|CDD|377229
NC_010296.1|WP_012268127.1|5479481_5480654_+|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|133022
NC_010296.1|WP_002777515.1|5492290_5492557_+|BrnT-family-toxin	unknown	unknown	gnl|CDD|367913
NC_010296.1|WP_012268128.1|5481350_5482367_+|glycosyltransferase	unknown	unknown	gnl|CDD|133055
NC_010296.1|WP_002796578.1|5486668_5489134_-|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl|CDD|214361
NC_010296.1|WP_012268139.1|5494499_5495759_-|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl|CDD|237001
NC_010296.1|WP_004158847.1|5482376_5483009_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_002756734.1|5496130_5496874_-|DUF561-domain-containing-protein	gnl|CDD|113257	pfam04481, DUF561, Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.	5.02841e-107
NC_010296.1|WP_012268141.1|5499006_5500155_-|sulfotransferase	gnl|CDD|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	1.42559e-06
NC_010296.1|WP_012268137.1|5492875_5493124_+|DUF29-domain-containing-protein	gnl|CDD|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	2.1605e-22
NC_010296.1|WP_002796578.1|5486668_5489134_-|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl|CDD|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
NC_010296.1|WP_041804423.1|5484623_5486171_-|glycosyltransferase-family-39-protein	gnl|CDD|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	0.00145436
NC_010296.1|WP_012268138.1|5493287_5494235_-|PRC-barrel-domain-containing-protein	gnl|CDD|368352	pfam05239, PRC, PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.	5.68538e-05
NC_010296.1|WP_002777513.1|5492559_5492817_+|BrnA-antitoxin-family-protein	gnl|CDD|373040	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system. BrnA is family of antitoxins that neutralizes the toxin BrnT, pfam04365. It consists of 3 alpha-helices and a C-terminal ribbon-helix-helix DNA binding domain. As in other toxin-antitoxin systems, BrnA negatively autoregulates the brnTA operon and has higher affinity for the DNA operator when complexed with BrnT. It dimerizes with two molecules of its toxin BrnT.	1.1758e-10
NC_010296.1|WP_041805027.1|5497325_5498678_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl|CDD|184646	PRK14360, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NC_010296.1|WP_004158845.1|5480713_5481331_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.03655e-07
NC_010296.1|WP_041804421.1|5484015_5484426_+|GtrA-family-protein	gnl|CDD|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.07273e-12
NC_010296.1|WP_012268127.1|5479481_5480654_+|glycosyltransferase-family-2-protein	gnl|CDD|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.59285e-48
NC_010296.1|WP_002777515.1|5492290_5492557_+|BrnT-family-toxin	gnl|CDD|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	2.47597e-33
NC_010296.1|WP_012268128.1|5481350_5482367_+|glycosyltransferase	gnl|CDD|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	5.78599e-31
NC_010296.1|WP_012268129.1|5483032_5483998_+|glycosyltransferase	gnl|CDD|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	6.4196e-41
NC_010296.1|WP_012268139.1|5494499_5495759_-|2-oxo-acid-dehydrogenase-subunit-E2	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	4.42104e-170
NC_010296.1|WP_004158847.1|5482376_5483009_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.45302e-17

Protein sequences

>NC_010296.1|WP_002796580.1|5489598_5490375_+|hypothetical-protein
MTRQSQKLYELNVVKLFRDAGGLSHYAELQHVPDHLERPDIIARIDSITIGIEIRNLFNDEKEGSGSRDCKRRGIYESVVKTCSHIHSRRSDKWIDVQVSFSSYVDADLIARRERKIAEMLVKLVEKYDPKIGDYFTLRAEKLWGPDWPEEIDFVRVMRLEGDDPPHWSYTDSFWVGETTDELIQNALDDKEPNVLKWRDGFDEALLLLVLDGSVGASMLRPHEQLMNNEYLSSFDRACVMEFDGKSYRELRLRRAKV
>NC_010296.1|WP_002796578.1|5486668_5489134_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLRDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVAAGSSSQGRTKTPTLDEFGSNLTQMASEGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPDILEEKRVVTLDIGLLVAGTKYRGEFEERLKKIMDEIRQAGNVVLVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIERDAALERRFQPVMVGEPSVEETIEILYGLRERYEQHHKLKILDEALEAAAKLSDRYISDRFLPDKAIDLIDEAGSRVRLINSQLPPAAKELDKELRQILKQKDDAVRGQDFEKAGELRDREMEIKTQIRNLASTKKGEDGNDEPFVDAEEIAHIVASWTGVPVNKLTETESEKLLHMEDTLHQRLIGQEDAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGSEDAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRLTDAKGRTVDFKNTLLIMTSNIGSKVIEKGGGGLGFEFADNQAEAQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLNKEEVKEIAEILLKDVFKRLTEQNITLSVTDKFKERLIEEGYNPAYGARPLRRAIMRLLEDVLAEEILSGRVSDGDTAMVDIDEEGKVKVISGERRELIAPVIE
>NC_010296.1|WP_012268132.1|5486293_5486593_-|hypothetical-protein
MKVWVVGCVLLFLLVEFYQWAKGFILPLPLYIFAGALLSIASNYSQDMSNLFAGNEQVDQTASLSDIPDILTAETAIASLEAADQKIVKSGIAESRHEY
>NC_010296.1|WP_041804423.1|5484623_5486171_-|glycosyltransferase-family-39-protein
MKTVTKLALIALLWITIINPANVPPDTDVRLKMAHALWTGTEEVSLPPNYRPSSRLDHVGVLGVDGKRYEAYDIGQSLLMLPADWIGTQLSKVFPSIKPYLLREFAVSFLVVIPLNVLVVLSCYWLLRLFDFQEKIAASASLIWLLGTTVLHYAQTFQQNNPVLLCVILGYACALAYIKTNKVTYVFLSGLAIGAAIIIRSTTIIYALTVFGFLISCLIYKNFKLNQIFKTAILWNVGLFPFLFVSRLFNYLRFGDFWTTAASLSIEQIRNGAIFSGLPELPPNYPFIHPPYVGILGVLFSPAKSIFIYDPFLLPCLVLGIILFNKLTPYIRIYFISSIFALVFHIILTSKLDFWHGDGSWAARYHVTSVHLLLVPLIALLILEMLSINRLKRWLISSLVVLSILVQFASLVFDPSVNSGVVIFAEPKSFLSFRLAERIDSVSCLIGLSRSQSCLTEEKYSKSDLAGRKYSKSALASRVYFWPLKSNKAQGLLWTIWGFLLITALISTLLFLVIG
>NC_010296.1|WP_041804421.1|5484015_5484426_+|GtrA-family-protein
MKFIAVNRLFRSSFFRFCLVGVFCAFQNILILYLLTNYLKLHYVLSIFVQMFYVNTLGFYLNRKYTFTGRIKIGSILGELIKYHGIMLSSSFAVAIAMYFLVDLFKVWYLSAYIILTILMTIYNFLAHKKWTFTRK
>NC_010296.1|WP_012268129.1|5483032_5483998_+|glycosyltransferase
MNDHLWLSVLIPTYNGDKYLKDTLDSILEQNERNVEYIIIDDGSTDRTLSIIKNYEDKIPIKLFERKRIGNWVANTNFALQNASGDYVCLLHQDDLWLNNRLKIIKEILNDYPDTDLLLHPSIFIDDRGKKLGLWTCPLPAFPKYVNRDILIERLLIQNFISIPAPIFKREIALQVGGMNEKLWYTADWDLWLKIAFHERDEKIIYYPYPLSAFRIHSSSQTVVRSSKTGEFYNQLNVVAHDYLDRWEVSTYRKKRIRSLAEFSIQVNTILARMAHGERSRLELIKLLLSSFSLGFLGVYKYLRYSRIQERIIARLKANII
>NC_010296.1|WP_004158847.1|5482376_5483009_+|class-I-SAM-dependent-methyltransferase
MPIGTFVRNLLGPWEKPISDIYRNIFIDLADLTHQIHKWVNPEIILELGCGEGALTELLASAYPSSHIIGIDITPRVGRMFQGNLDHVRFEQKSIQEFVAETPQSVDLVVISDVMHHVPWSMHEEFLTYAGKSVKPNGYIILKDWCKNNSPIHYLCYLFERYITGDKVKYKTTKQFRDMIYKLFGKQSILLESTVRPWKNNIVFLIKISS
>NC_010296.1|WP_012268128.1|5481350_5482367_+|glycosyltransferase
MSKPWLSVLIPTYNGEKYLVKALNSIAIQDDFDIECLAIDDGSTDETLAILQYFQTKIPLKIVQREPQKNWVANTNYLLNMARADYVCFLHQDDMWLTWRLMILKKLTIQFPEANLILNPSIFVNIQGQKLGLWRCPLPSYPIMISSEQMISKLLVQNFISIPAPIFKREMALKVGGLDEKLWYTADWDFWLKLAQDGQIIYYPKPLSVFRIHSHSQTVTRSSYIQDFRQQLESVIDEHLEAWNTSSQTKSKIRKIANFSIAHWRNFIFTRYRRFSVCFIHLECSTLWSLMSSRSHGNCHSFRTRFSLGSTGDFFQFLFKCFGTKTKMKTAEDKLIGG
>NC_010296.1|WP_004158845.1|5480713_5481331_+|class-I-SAM-dependent-methyltransferase
MNRKINPFNQDTKNQSYSERLLNKQTAKWKEILDVQAPYRWNLQRLNLGFTLDIGCGIGRNLMNLKGNGIGIDHNFHSVEVCRARGFMAFTPEEFQQSSFDEPEKFDSILLAHVAEHMSYLEVINLLNDYVYLLKNHGKLVIITPQEAGFKSDATHVEFMNFAKLKAIARELDSKIIKQYSFPFPRIVGKLFKYNEFVSLSQKEK
>NC_010296.1|WP_012268127.1|5479481_5480654_+|glycosyltransferase-family-2-protein
MLENQVRADAASNEQIPTLELSIIMPCLNEAETLATCIGKARDYLEQHKIAGEVLIADNGSSDGSQEIATNSGARVVPIPERGYGSALRGGIAAAKGQYIIMGDADDSYDFTNLSPFLEKLRQGYDLVMGNRFQGGIKPGAMPVLHKYLGNPVLTWLGRLFFGSPCGDFHCGLRGFSKQAIEQLNLRTTGMEFASEMVVKASLYGLKITEVPTTLSPDGRSRPPHLKTWRDGWRHLRFLLMYSPRWLFLYPGLALMFLGLIATIWFMTQPRVHTLLYSATALIIGFQIVSFAIFTKAFAISEGLLPEDRKLRRFLRYINLEVGLIIGVILLVLGMGGSLYALYIWNARLYGALDPAVTMRIVIPSVTALALGVQVVFSSFFLSVLQLKRK
>NC_010296.1|WP_002777515.1|5492290_5492557_+|BrnT-family-toxin
MAYQWNRAKAAANLRKHGIDFADAVSVFSDDLAITIPDERFDEERFVTIGVDVFGRVLVVVYTMRGDEIRFISARKATRQERQQYEEG
>NC_010296.1|WP_002777513.1|5492559_5492817_+|BrnA-antitoxin-family-protein
MDAEYDFSQGKRGAIEPTPPGKSRITIRLDDEVLAWFREQVHIAGGGNYQTLINEALRQYIQQSREPLEETLRRVVREELERIER
>NC_010296.1|WP_012268137.1|5492875_5493124_+|DUF29-domain-containing-protein
MQRLSAFGELGRWLDSINDRRSQIRRKLEDSPSLRGYPAQILDKEYTRARREAARQTGLFLSVFPEFCPYTIAQVIEDWWPQ
>NC_010296.1|WP_012268138.1|5493287_5494235_-|PRC-barrel-domain-containing-protein
MITENSRLRSEFLNTQVITRNTGKKLGVVKDILVDIDQREVVALGLRDNILSLSGMPQYMYLSSISQTGDVVLVEDDNVLESVDIDAYTPLIGSEVITETGEPLGKVRDYQFDPLSGQLHSIVIASLGLPLIPEQLISTYEIAIEEVVSSGPNRLIVFEGAEERLTQVSVGVLERLGIGRPPWEREEEEAYYTPAARPENQLGTGIPLRTPVEAAKPVEERWSEDEWEKEPLRATPPPQKRAEARYYEEEYEEEEDNWGEARSERAESFSRPQYDDYEDKAEDDMWDDDVEPDYNPPRINITEKKKERIPEYEDG
>NC_010296.1|WP_012268139.1|5494499_5495759_-|2-oxo-acid-dehydrogenase-subunit-E2
MIRDIFMPALSSTMTEGKIVSWVKSPGEKVSKGETVLVVESDKADMDVESFYDGYLAVILVEAGQEAPVGEAIAYIAETEAEIELAKAQGKTATAAPSKPVETPEIAPPPVSIPVAAVKDNGRLVASPRAKKLAKELKVDLKTLVGSGPHGRITAEDVEKATGKVSTAPAPVITPPQPVSVPVAAPKAPIPASAPVGRTVPLTTLQKAVAQNMSVSLQVPTFQVGYTITTDPLDQLYQQLKSKGVTMTALLAKAVANTLAKHPIVNASYSDAGIQYHGAINVSVAVAMPGGGLITPVLRSADQMDIYSLSRSWKDLVDRARSKQLQPEEYNSGTFTISNLGMFGVDRFTAILPPNQGAILAVGASRPQIVVNKDGLFGVQKQMTVNLTSDHRVIYGADAASFLQDLAKLIETEVQSLTM
>NC_010296.1|WP_002756734.1|5496130_5496874_-|DUF561-domain-containing-protein
MINFTLQQAFARRHALKVISGLNNFDRSQVLSVVKAATAGGATFVDIAANADLIRTVKALTNLPVCVSAVEPELLVMAVDAGADLIEIGNFDSFYAQGRIFEAAEVLALTRQTRDLLPEITLSVTVPHLLPLDEQVRLAEALVSQGADIIQTEGGTSSQPRHAGILGLIEKAAPTLAAAHAISHAVKVPVLCASGLSIVTAPMAIAAGAAGIGVGSAINQLDNEVAMVAAVRGLVESLQAQPVHIGN
>NC_010296.1|WP_002756735.1|5496966_5497134_-|hypothetical-protein
MTTVLTKESSAMKQIRTTYQADQQVKYLHLEAEIEVLLQQLQNLKRKNQENQHLN
>NC_010296.1|WP_041805027.1|5497325_5498678_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MVAVAILAAGKGTRMKSSLPKVLHPLGSRSLVERVLNVSESLHPQRKLVIIGYQGQQVRNTLQHLDDIEFVEQKEQLGTGHAIQQLIPHLEDFQGDLLVLNGDVPLLRPETLQNLLQIHQDHGNAATLLTANLPNPKGYGRVFCDGNNLVKQIVEERDCTDAQRQNHRINGGIYCFNWSKLAAILPNLTPNNDQGEYYLTDVVNFLDPVMAVDVEDFLEITGINDRKQLAAAYDILQTRVKDDWMAAGVTIIDPDSVTIEDTVTLSADVIIEPQTHLRGETIIASGCRIGPGSLIENSRIGSDVTVLFSVISDSQVDSGCRIGPYAHLRGEAKIGANCRVGNFVEIKKSSIGNKTNIAHLSYLGDATLGEKVNVGAGTITANYDGVKKHQTMIGSGTKTGANSVLVAPLKLGKNVTVAAGSTITKNVPDNALVIARESQRVIENWADQFQ
>NC_010296.1|WP_012268141.1|5499006_5500155_-|sulfotransferase
MSGQFLYIQKKQKNNPALVADVSDFDYLEGEKIDDIAQVVSQRNVSLYCLDHQQKQVIFVETPSDIDIFAYPFLYQAQFEYAHRLIAISYETICQLAQTFKIPDNQLIFIYPVGRCGSTLLSRIFHQVEYVISLSEPDIFSQIVGLRMPDKSNDCQLAELLLVLTALLCKPNQLKNPSFYVFKLRGFCIEIADILHKVFPHSKGIFLYRDAQKVVESCIRAFDPYMSSHLLLIKEKKNFYNRFITLFEEYSDLIDYSNSIDFYLVRWLSYMHRYLWLYQQKLPLCAIRYEDLTTHPKQIISYLFDYCGLSIEIESIILEIDKLLKTDSQNNSIFSWQNTRRNKVSNLSEIHQKTTRILQKHPEIRKSNFILPGTVKIKDNKD
>NC_010296.1|WP_041805028.1|5500191_5500812_-|hypothetical-protein
MTVPYAGHLTDKNQVLNEKYYVRHLIETIKRIRLTSQTDALALAYMIDEDYEAARLWGRYTAQEMTHDLLFIKDLRQHGYTEKQVFEIQPFQATEAMIDYLKNKIKEIGSLPAVAYSLFVEWNSDQSSGYVIDKVAEKFSKSFVIGAKAHVKIDENEDHYEMMLDVAHRLIVKYADEEILIDILRKIAEFIAAYFYELYQETVITS

Crispr_ID: NC_010296_38

• CRISPR_ID: NC_010296_38
• CRISPR_location: 5821983-5822248
• CRISPR_type: TypeV
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: Cas14c_CAS-V-F,cas14k

Consensus repeat of NC_010296_38

Consensus_repeat	Method
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	CRT
ATACCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	PILER-CR
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CRISPRCasFinder

spacers of NC_010296_38

>38.1|5822019|42|NC_010296|CRT
TAAAAAAATAAGGCTAATTTATTAATTAGCCTTACTCTTATT
>38.2|5822097|38|NC_010296|CRT
ATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTC
>38.3|5822171|42|NC_010296|CRT
TGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGA
>38.4|5822097|35|NC_010296|PILER-CR
ATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAA
>38.5|5822171|39|NC_010296|PILER-CR
TGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCG
>38.6|5822096|39|NC_010296|CRISPRCasFinder
CATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTC
>38.7|5822170|43|NC_010296|CRISPRCasFinder
CTGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGA

CRISPR arrays and Neighbor proteins around NC_010296_38

CRISPR arrays

The CRISPR arrays of NC_010296_38

>merge|NC_010296|38|5821983-5822248|CRT,PILER-CR,CRISPRCasFinder
AGCAAAATTAATTACACATTAGGATTAGTTGGAAACTAAAAAAATAAGGCTAATTTATTAATTAGCCTTACTCTTATTCCTTACCTATTAGGTCAAATAGGATTAGTTGGAAACATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTCCCTTACCTATTAGGTCAAATAGGATTAGTTGGAAACTGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGACCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAG

>NC_010296|38|6|5821983-5822248|CRT
AGCAAAATTAATTACACATTAGGATTAGTTGGAAAC	TAAAAAAATAAGGCTAATTTATTAATTAGCCTTACTCTTATT
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	ATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTC
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	TGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGA
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAG

>NC_010296|38|4|5822058-5822248|PILER-CR
ATTCCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	ATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAA
TTCCCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC	TGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCG
AGACCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAG

>NC_010296|38|36|5822061-5822247|CRISPRCasFinder
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CATAAAGTTTTGAGCGGTGCGCTCAGACCAGTCAAATTC
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA	CTGAGTTAACTGATACTTCTTAATCGAAGCTTGTCCACCGAGA
CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010296.1|WP_012268387.1|5830297_5831065_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223488
NC_010296.1|WP_002737442.1|5825382_5825571_-|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804468.1|5812779_5813637_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
NC_010296.1|WP_002797402.1|5823519_5824956_+|DUF697-domain-containing-protein	unknown	unknown	gnl|CDD|206646
NC_010296.1|WP_012268383.1|5827399_5828464_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14k	-	gnl|CDD|223747
NC_010296.1|WP_002797394.1|5815059_5815791_+|glutathione-peroxidase	unknown	unknown	gnl|CDD|223750
NC_010296.1|WP_012268375.1|5816528_5817815_+|transposase	Cas14c_CAS-V-F	-	gnl|CDD|223747
NC_010296.1|WP_158303570.1|5832131_5832272_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_041804469.1|5813898_5814849_-|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl|CDD|234712
NC_010296.1|WP_012268378.1|5818708_5819242_+|DNA-starvation/stationary-phase-protection-protein-Dps	unknown	unknown	gnl|CDD|236521
NC_010296.1|WP_012268380.1|5820819_5821677_+|IS5-family-transposase	unknown	unknown	gnl|CDD|372577
NC_010296.1|WP_012264449.1|5826827_5827397_+|IS607-family-transposase	unknown	unknown	gnl|CDD|239738
NC_010296.1|WP_002737690.1|5825101_5825398_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|368240
NC_010296.1|WP_012268385.1|5828946_5830023_-|AI-2E-family-transporter	unknown	unknown	gnl|CDD|182881
NC_010296.1|WP_002797403.1|5826044_5826737_+|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223736
NC_010296.1|WP_002739432.1|5818013_5818220_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|224514
NC_010296.1|WP_012268376.1|5818222_5818450_+|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl|CDD|377942
NC_010296.1|WP_002739434.1|5815999_5816350_+|hypothetical-protein	unknown	unknown	unknown
NC_010296.1|WP_012268379.1|5819274_5820558_-|protein-kinase	unknown	unknown	gnl|CDD|270916
NC_010296.1|WP_012268381.1|5822456_5823365_-|transglutaminase-family-protein	unknown	unknown	gnl|CDD|224224

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010296.1|WP_012268383.1|5827399_5828464_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14k	-	3.7e-31	102.8	1.8
NC_010296.1|WP_012268375.1|5816528_5817815_+|transposase	Cas14c_CAS-V-F	-	9.1e-82	269.9	15.3

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010296.1|WP_012268387.1|5830297_5831065_+|ABC-transporter-ATP-binding-protein	gnl|CDD|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	9.96611e-126
NC_010296.1|WP_041804468.1|5812779_5813637_+|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.04266e-36
NC_010296.1|WP_002797402.1|5823519_5824956_+|DUF697-domain-containing-protein	gnl|CDD|206646	cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.	5.62943e-40
NC_010296.1|WP_012268383.1|5827399_5828464_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl|CDD|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.3452e-21
NC_010296.1|WP_002797394.1|5815059_5815791_+|glutathione-peroxidase	gnl|CDD|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.62757e-92
NC_010296.1|WP_012268375.1|5816528_5817815_+|transposase	gnl|CDD|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.71698e-52
NC_010296.1|WP_041804469.1|5813898_5814849_-|undecaprenyl-diphosphate-phosphatase	gnl|CDD|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	2.52228e-93
NC_010296.1|WP_012268378.1|5818708_5819242_+|DNA-starvation/stationary-phase-protection-protein-Dps	gnl|CDD|236521	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional.	1.58294e-88
NC_010296.1|WP_012268380.1|5820819_5821677_+|IS5-family-transposase	gnl|CDD|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.03839e-19
NC_010296.1|WP_012264449.1|5826827_5827397_+|IS607-family-transposase	gnl|CDD|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	8.97981e-51
NC_010296.1|WP_002737690.1|5825101_5825398_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	4.09698e-07
NC_010296.1|WP_012268385.1|5828946_5830023_-|AI-2E-family-transporter	gnl|CDD|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	8.77391e-40
NC_010296.1|WP_002797403.1|5826044_5826737_+|Crp/Fnr-family-transcriptional-regulator	gnl|CDD|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.72665e-27
NC_010296.1|WP_002739432.1|5818013_5818220_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	8.11386e-16
NC_010296.1|WP_012268376.1|5818222_5818450_+|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl|CDD|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	2.01838e-15
NC_010296.1|WP_012268379.1|5819274_5820558_-|protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.00622e-16
NC_010296.1|WP_012268381.1|5822456_5823365_-|transglutaminase-family-protein	gnl|CDD|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	7.37436e-35

Protein sequences

>NC_010296.1|WP_012268380.1|5820819_5821677_+|IS5-family-transposase
MFISKIMDYQNLSDEQFKRRFGVYKQTYRKMVESVKSVEADSNSPSKRGPKPKLSIEEQVLVTLEYWREYRTYFHIGTSWELSESTICRIVNKTEKMLLQSGNFRLKGKKALLNQAEIPVITVMDVTETPIERPQKKQKDFLGGKRGYHTLKSQLVADQNTEEIICVFCGKGRGHDFSLFKKSRVRFHPLTTSIEDSGYQGIAAYHSNSYTPKKKSKNRKLTELEKEYNKALAKERIIIEHINRKLKIFKILSCKYRNRRRRYSLRVNLLAAIYNGELGIGIAAS
>NC_010296.1|WP_012268379.1|5819274_5820558_-|protein-kinase
MLDRVLHSRYQVQQVLGKKTILARDRQTTQLVIIKLISVPSGQGSQFIGEITGKIALLRQLSHPSLPKYLDSFEIDSSQEQIIAIVRPYLSAQPLENYLNSSYLLAEQDLKQIAKYLLEILSYLHQQDVPINHGNIKLSNILFDTQSHRFYLVDFAFDSDSPTTDLEDIGKTLISLATGIKHRYIPENFEQKTNLSAFFIYWLKRLSNSPPDPHFRSVTEALASLYSCQLILVSIGNLTKPYGSEVTVYKKDNLLQIKIASKTKQKFFNNLKTQLRQFLPSLFFTIILLTIVGIYDLKLVAFLIPIILIFLLNLISSSLSWQLWKSFWQGELELKITPKKVSLYQKLWGLKFKLTAHAASCEIYSLIRRNVTVTMQGENVNIIPPSLVLVANHREYVITASEDVSEAELDWLAQQLSDWLRLPITRI
>NC_010296.1|WP_012268378.1|5818708_5819242_+|DNA-starvation/stationary-phase-protection-protein-Dps
MVATPVKTKTTGQYYATRIDLALDIRKAIVEILSQTLAASLDLKTQVKQAHWNVKGLNFYQLHSLFDEMATELEGYGDMVAERITALGGTALGTARIAAANSILPEYPADIVDGSEHIVALAERYALYAAHLRSAIDTTGNQGDADTADLYTEISRDIDKRLWFLEAHLIKSEDVIR
>NC_010296.1|WP_012268376.1|5818222_5818450_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MSSALPVLSGREVVRVFETFGWQVARQSVSHIIMVKEGEQVTLSVPDHREVAKGTLRSLIRTAGITVQEFVSGMR
>NC_010296.1|WP_002739432.1|5818013_5818220_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKLTVTLDRDEDGVWVVECPSIPGCVSQGKTRAEALENIRDAIIACLQVRAERGLPLTIETHQVEVMA
>NC_010296.1|WP_012268375.1|5816528_5817815_+|transposase
MLVVEAKLKNGTPEQYQKLDEAIRTSQFVRNSCVRYWMDNQGTNRNDLQKLCAVLANNKETPWVNKLNSQARQSAADRAWQSISKFYQNCHAKIPGKKGFPRFKKHSRSVEYKLTGYKLSDERRQIKFTDGFKAGEFDLWCSQKTLVYYSEQQIKRVRVVRRADGYYCQFLIDVERQEYHKPTGQITGIDLGLKEFYTDAQGNTVENPRYLSKSEKRLKKAQRRLSKRFRQGKKQSKNYHKQRIKVARLHLKVSRQRKDKAIKDALALVQSNDLVVYEALKVRNLVKNRKLSKSISDASWYQFTEWLNYFAKIYRIVCVAVPPHFTSQDCSVCGTRVQKTLSTRTHQCPNCKTILDRDHNAAINILKKGLKYLGNYLNGTVGQTETDPNALGESDLWVFNGDIENLSCLVEQGISDSDRSRIPRHSVA
>NC_010296.1|WP_002739434.1|5815999_5816350_+|hypothetical-protein
MRIADFVKARDFIKPNEKVVVIFTEGKHFVLHDDNTGSTGQWKIDPNREVDRIILYHRDDENNANNLYIANHAGAEPADREGRYDIRLTHVQYIGATSVNWVEFAEGGQNPIRYLP
>NC_010296.1|WP_002797394.1|5815059_5815791_+|glutathione-peroxidase
MLPNREGQRVPDVTFPVRQNNQWVNITSEELFKGKTVVLFALPGAFTPTCSTSHLPGYNELAPVFRENGVDSIVCLSVNDTFVMNEWAKDQECDNVVLIPDGNGEFSAGMGMLVDKADLGFGQRSWRYSMLVKDGVIEKMFIEPEEPGDPFKVSDAETMLNYINPEAKKPPLVSLFSKVGCPYCLRAKKMLEEKGLQYEEIILGRDATSRSLRAMSGNTTTPQVFINGQLIGGSEELAAYLGA
>NC_010296.1|WP_041804469.1|5813898_5814849_-|undecaprenyl-diphosphate-phosphatase
MMFSLLKKSYKWLGLAIITVILAITPAVIAQSTTSAIPLAKINWLQAIFLGFVQGVTEFLPISSTAHLKAIPVFLGWGDPGVTYTAVIQLGSIAAVLSYFWQDLRQISTGMVKAVASSDYRSQDFRLAVGIILGTIPIVFFGLLMKLFIPDLDNSPLRSMTAIACASIVMALLLGTAEKIGKHKRSFETLRQKDGVLMGLAQALALIPGVSRSGSTLTAGLFMGLERAVAARFSFLLGIPAITLAGLVEFKGVLDQINTSELIPLGIGVISSGIFSYLSIAWLLDYLKKQSTWVFVWYRLFFGVTILIGVALGRFS
>NC_010296.1|WP_041804468.1|5812779_5813637_+|alpha/beta-hydrolase
MKTQIIDKTITVRGVPHYYEWIRQSESAQKKPVMVFIHGWGGSGRYWRSTAAAVCDRFDCLLYDMRGFGRSKLPEKSPDLSYDLEEYALDLALFLDSLEIEKIYLNSHSMGASVATFFITMYPERVVKAVLTCNGIFEYNKAAFAAFHKFGKYVVQFRYDWFLKVPFADQLFMARFLHRSIPKSERIAFLEDFLAADYEAALGTIYTSVSKKAVEIMPGKFAEIKVPTLLVSGEKDIIIPAKMGKMAADLNNNIQYVEMANTAHFPMLEDAPTYLRKLQDFLEIN
>NC_010296.1|WP_012268381.1|5822456_5823365_-|transglutaminase-family-protein
MSVIYDLEHITSYHYRKLVTFGEHRAIFLPSAGHGERIISYSVEANIAAKTRWTMDTLSNNVVGIEFAQAASELIVTCRLRAEHFGLKAIADFPLDQRAIEIPIQYTPDEWLDLVVFMRPHAEDADGSLAAWAKSFVAGDQDDTLDVMARMMAAIKDNFTYQSRESEGTQSPGETLRLKSGTCRDYAWLMIEALRRLGLACRFVSGYLYDAALDGGEVGMTGSGATHAWLQVYLPGAGWRNYDPTNQITAGFDLIRVAIARHPGQIIPLSGSWFGDADDYLSMDVKVTIRKLGTLPDFDPRE
>NC_010296.1|WP_002797402.1|5823519_5824956_+|DUF697-domain-containing-protein
MTSDPFLDRAWNTEDLEQALRGVGTIQEELNYNQARNSLSKLVDRLDLTSIEKIGLEAEIDRLVALLEKLDRSLIQIAAFGLVGRGKSSILNALVGQEIFTTGPLHGVTRTIKGVNWQLSSDDTFPHLARLTLNGQGNAQVQLLDTPGIDEVDGQTREILACQVAQQVDLILFIISGDMTKVEFSALAKLREAGKPMILVFNKIDQYPEVDRLAIYEKIASERVKELLSPDEIVMVAASPLLAETVKGQDGRLKMQRFCGKPQIEALKLKILEILEREGKSLVALNSMLYADEVNEQIVARKMAIRDRGANQLIQKAVMIKASAIALNPVTVLDLFTGAVIDLAMILALSRLYGIDLTRQGAIALLQKIALNMGGISASEFLAVLGLSSLKGLLGLSIPATGGISLLPYTSIALTQAGVAGVSCYAIGQVTKTYLANGATWGPDGPKAVVASILDSLDETSILNRIKRELGSKLGVGG
>NC_010296.1|WP_002737690.1|5825101_5825398_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MADRVNYRLVWSPKAIEDVDAIASYISRDSPSYAAAVVRRILDISYSLENCPLEAKKCAEFSDDTIREKSAYAYRLIYQIQGAVVIIAAIVHSKHFLD
>NC_010296.1|WP_002737442.1|5825382_5825571_-|hypothetical-protein
MNSIRQKVESLLNQLPDDCSIEDIQYHLYVLEKVRQSLNAASLENTIPQEEVEGLLNKWLIE
>NC_010296.1|WP_002797403.1|5826044_5826737_+|Crp/Fnr-family-transcriptional-regulator
MSSSVPSSDFIPLIGQETEIFNWAKSHYRNHTFAKDEKVATRPGLLYFVESGAIRIVGKAQVNVIDQKSSRQLPMADSEEVFLGFVGAGQPFEIVSQFPFQLQAQAHLDGTELVWLYWEDIEKWPQLRAAVMETFRHQYQRKLFWLSILGQKRSLDRLMGFLVLLLEEYGQPCVEGYYLPYPLTHAQIASAIGTTRVTVTRLIGKLRQQNSIFFKQDNLIGLPSLFLSQN
>NC_010296.1|WP_012264449.1|5826827_5827397_+|IS607-family-transposase
MKLSDYAKKTGISYRTAWRWWKQGNLTGYQLPSGTIIITDDNHSKPDLIACIYARVSSAENKDNLDRQADRLKDYAVARGYKIYKVVKEVGSGLNDNRQQLAKILVDPNYNVLIVEHKDRLARFGTNYLEILLKELDKKVEIVNQSEDNQDELMSDLIAIITSFCSRIYGLRRSKRKTEKIIAELKDNG
>NC_010296.1|WP_012268383.1|5827399_5828464_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLVAERHIIKKGHRFWAEIDNLSWQSKNLYNSANYLIRQNFIYGHGYLTYNQMASLRSKTEQYQALPAKVSQQVLRGLDKNWPSFFAASSEFKSHPDKFLVKPKIPSYKEPKKGRNLLVYTIQSLSKVGLRQGIVKLSGTSIALPTRVAERIAEVRIVPKCDCYVIEVIYEKTEQFLAPNEKIAALDLGIDNLMAVTSNQPDFIPLLINGRPLKSLNQFYNQRRAKLQSLLKGNRQSSQRMRRLTRCRNQKVDDYLHQASRYLVNLLVDQEITTLVIGKNDGWKQEVNLGKVNNQKFVTIPHARLIEMISYKCQLEGISVILQEESYTSASNFLNDDPLPVYGQITEKPVFSGN
>NC_010296.1|WP_012268385.1|5828946_5830023_-|AI-2E-family-transporter
MKNDAKIIDLVIRLFFLGLLLFAGFTLLRPFLTMILWGAILAIAWYPLFLWLKKLLAGRAKLATVLLTLLCLGIIIGPVSGIAAVLAGNLRTMAEYIDTGAVLIPPPPADVATWPLIGERIAGLWQQASDNTGQFLQRFEPQLKELGKISLSLATSTGLTVLKFIASILIAAALTLSAKNLTRPMNRLAEKIAPGRGIALAGLTASTVRNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTLLTLILGILQIGPGLIVLGALIHAWVTLPNSIALLFTLWMIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYGIIGLFVGPVLLGLCYELVRAWIGEDSPEPVANSHDRPI
>NC_010296.1|WP_012268387.1|5830297_5831065_+|ABC-transporter-ATP-binding-protein
MPANLLEVRGATRRFGGLVAVDGVSFQVQKNEIFGLIGPNGAGKTTLFNLITGLIPLSSGDLIYQGDSLANYRPHQIAQAGIARTFQNLRLFGELSALENVAIAGNIHNSSNLWTGIFGLPVSRREEEKTYKRAAELLDLVGLTDQSNRKASNLAYGDQRRLEIARALALQPQLLLLDEPAAGMNPSEKGSLSQLIRQIRDNLALTVLLIEHHVPLVMGLCDRIAVLDFGKLIALGEPATVRENPAVIEAYLGDE
>NC_010296.1|WP_158303570.1|5832131_5832272_+|hypothetical-protein
MNYPYGIIPTELSLRNYPYDRNCCYSDYKIGSIFFLKTLDKWRDLL

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010296_5	5.2|546364|19|NC_010296|CRT	546364-546382	19	NC_010296.1	403675-403693	0	1.0
NC_010296_5	5.2|546364|19|NC_010296|CRT	546364-546382	19	NC_010296.1	1661232-1661250	0	1.0
NC_010296_5	5.2|546364|19|NC_010296|CRT	546364-546382	19	NC_010296.1	1761578-1761596	0	1.0
NC_010296_5	5.2|546364|19|NC_010296|CRT	546364-546382	19	NC_010296.1	1979029-1979047	0	1.0
NC_010296_5	5.2|546364|19|NC_010296|CRT	546364-546382	19	NC_010296.1	3091296-3091314	0	1.0
NC_010296_5	5.2|546364|19|NC_010296|CRT	546364-546382	19	NC_010296.1	3217867-3217885	0	1.0
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NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5083850-5083874	1	0.96
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5364283-5364307	1	0.96
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5474710-5474734	1	0.96
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5646727-5646751	1	0.96
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5646763-5646787	1	0.96
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5682691-5682715	1	0.96
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5733077-5733101	1	0.96
NC_010296_32	32.1|5076950|49|NC_010296|CRISPRCasFinder	5076950-5076998	49	NC_010296.1	1786524-1786572	1	0.98
NC_010296_32	32.1|5076950|49|NC_010296|CRISPRCasFinder	5076950-5076998	49	NC_010296.1	1786561-1786609	1	0.98
NC_010296_32	32.1|5076950|49|NC_010296|CRISPRCasFinder	5076950-5076998	49	NC_010296.1	4972351-4972399	1	0.98
NC_010296_32	32.1|5076950|49|NC_010296|CRISPRCasFinder	5076950-5076998	49	NC_010296.1	4972388-4972436	1	0.98
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	3845423-3845471	1	0.98
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	3845460-3845508	1	0.98
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	3845497-3845545	1	0.98
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	310007-310039	1	0.97
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	2605441-2605473	1	0.97
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	5665885-5665917	1	0.97
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	310007-310039	1	0.97
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	2605441-2605473	1	0.97
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	5665885-5665917	1	0.97
NC_010296_5	5.2|546364|19|NC_010296|CRT	546364-546382	19	NC_010296.1	2778633-2778651	2	0.895
NC_010296_5	5.4|546438|19|NC_010296|CRT	546438-546456	19	NC_010296.1	2289924-2289942	2	0.895
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NC_010296.1	632681-632708	2	0.929
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NC_010296.1	759411-759438	2	0.929
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NC_010296.1	1879047-1879074	2	0.929
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NC_010296.1	3262259-3262286	2	0.929
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NC_010296.1	3377991-3378018	2	0.929
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NC_010296.1	5110934-5110961	2	0.929
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NC_010296.1	5634997-5635024	2	0.929
NC_010296_23	23.1|2869775|37|NC_010296|CRISPRCasFinder	2869775-2869811	37	NC_010296.1	995671-995707	2	0.946
NC_010296_23	23.1|2869775|37|NC_010296|CRISPRCasFinder	2869775-2869811	37	NC_010296.1	2126077-2126113	2	0.946
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	151400-151424	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	237822-237846	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	403667-403691	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	404249-404273	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	700491-700515	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	1370666-1370690	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	1761580-1761604	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	1797536-1797560	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	1797610-1797634	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	1979031-1979055	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	2289926-2289950	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	2354105-2354129	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	2407121-2407145	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	2569721-2569745	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	2622227-2622251	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	2778657-2778681	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	3005425-3005449	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	3005457-3005481	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	3541352-3541376	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	3541389-3541413	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	3541426-3541450	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	3541463-3541487	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	4211781-4211805	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	4993756-4993780	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5277949-5277973	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5354023-5354047	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5364246-5364270	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5514512-5514536	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5514549-5514573	2	0.92
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_010296.1	5823419-5823443	2	0.92
NC_010296_32	32.1|5076950|49|NC_010296|CRISPRCasFinder	5076950-5076998	49	NC_010296.1	4972277-4972325	2	0.959
NC_010296_32	32.1|5076950|49|NC_010296|CRISPRCasFinder	5076950-5076998	49	NC_010296.1	4972314-4972362	2	0.959
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	2190692-2190740	2	0.959
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	2354108-2354156	2	0.959
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	3541362-3541410	2	0.959
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	3541399-3541447	2	0.959
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	3541436-3541484	2	0.959
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	5277952-5278000	2	0.959
NC_010296_32	32.2|5077024|49|NC_010296|CRISPRCasFinder	5077024-5077072	49	NC_010296.1	5514515-5514563	2	0.959
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	309995-310027	2	0.939
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	2605453-2605485	2	0.939
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	3837018-3837050	2	0.939
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	3837030-3837062	2	0.939
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	3837042-3837074	2	0.939
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	5603455-5603487	2	0.939
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NC_010296.1	5663180-5663212	2	0.939
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	309995-310027	2	0.939
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	2605453-2605485	2	0.939
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	3837018-3837050	2	0.939
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	3837030-3837062	2	0.939
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	3837042-3837074	2	0.939
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	5603455-5603487	2	0.939
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NC_010296.1	5663180-5663212	2	0.939

1. spacer 5.2|546364|19|NC_010296|CRT matches to position: 403675-403693, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

2. spacer 5.2|546364|19|NC_010296|CRT matches to position: 1661232-1661250, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

3. spacer 5.2|546364|19|NC_010296|CRT matches to position: 1761578-1761596, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

4. spacer 5.2|546364|19|NC_010296|CRT matches to position: 1979029-1979047, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

5. spacer 5.2|546364|19|NC_010296|CRT matches to position: 3091296-3091314, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

6. spacer 5.2|546364|19|NC_010296|CRT matches to position: 3217867-3217885, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

7. spacer 5.2|546364|19|NC_010296|CRT matches to position: 3541360-3541378, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

8. spacer 5.2|546364|19|NC_010296|CRT matches to position: 3541397-3541415, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

9. spacer 5.2|546364|19|NC_010296|CRT matches to position: 3541434-3541452, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

10. spacer 5.2|546364|19|NC_010296|CRT matches to position: 3541471-3541489, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

11. spacer 5.2|546364|19|NC_010296|CRT matches to position: 5277947-5277965, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

12. spacer 5.2|546364|19|NC_010296|CRT matches to position: 5364281-5364299, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

13. spacer 5.2|546364|19|NC_010296|CRT matches to position: 5514547-5514565, mismatch: 0, identity: 1.0

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttaatccc	Protospacer
*******************

14. spacer 5.4|546438|19|NC_010296|CRT matches to position: 225126-225144, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

15. spacer 5.4|546438|19|NC_010296|CRT matches to position: 2151597-2151615, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

16. spacer 5.4|546438|19|NC_010296|CRT matches to position: 2190724-2190742, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

17. spacer 5.4|546438|19|NC_010296|CRT matches to position: 2569729-2569747, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

18. spacer 5.4|546438|19|NC_010296|CRT matches to position: 3915512-3915530, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

19. spacer 5.4|546438|19|NC_010296|CRT matches to position: 4698676-4698694, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

20. spacer 5.4|546438|19|NC_010296|CRT matches to position: 5354021-5354039, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

21. spacer 5.4|546438|19|NC_010296|CRT matches to position: 5474718-5474736, mismatch: 0, identity: 1.0

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttaatccc	Protospacer
*******************

22. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 671718-671745, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

23. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 1120867-1120894, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

24. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 2672468-2672495, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

25. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 2850671-2850698, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

26. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 3577743-3577770, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

27. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 4068809-4068836, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

28. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 4332641-4332668, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

29. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 4412369-4412396, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

30. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 5353202-5353229, mismatch: 0, identity: 1.0

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttctgccccct	Protospacer
****************************

31. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 9446-9482, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

32. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 485477-485513, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

33. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 497546-497582, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

34. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 542400-542436, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

35. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 667105-667141, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

36. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 821857-821893, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

37. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 825385-825421, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

38. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 993923-993959, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

39. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1048703-1048739, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

40. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1318345-1318381, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

41. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1520731-1520767, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

42. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1646452-1646488, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

43. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1650042-1650078, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

44. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1725458-1725494, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

45. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 2157484-2157520, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

46. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 2500512-2500548, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

47. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 2551453-2551489, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

48. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 2854063-2854099, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

49. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 2999817-2999853, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

50. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3070699-3070735, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

51. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3673120-3673156, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

52. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3863889-3863925, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

53. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3920704-3920740, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

54. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 4211874-4211910, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

55. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 4301777-4301813, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

56. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 4604768-4604804, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

57. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 4778841-4778877, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

58. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 4943938-4943974, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

59. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 5050016-5050052, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

60. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 5369102-5369138, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

61. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 5435787-5435823, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

62. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 5447639-5447675, mismatch: 0, identity: 1.0

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgcccg	Protospacer
*************************************

63. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4223568-4223592, mismatch: 0, identity: 1.0

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttaat	Protospacer
*************************

64. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5795360-5795384, mismatch: 0, identity: 1.0

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttaat	Protospacer
*************************

65. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 1443310-1443358, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

66. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 1443347-1443395, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

67. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 1443384-1443432, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

68. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 1443421-1443469, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

69. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 1443458-1443506, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

70. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 3938448-3938496, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

71. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 3938485-3938533, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

72. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4290624-4290672, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

73. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4290661-4290709, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

74. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4290698-4290746, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

75. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4290735-4290783, mismatch: 0, identity: 1.0

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccgataggcggggggat	Protospacer
*************************************************

76. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 83017-83049, mismatch: 0, identity: 1.0

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgatttcc	Protospacer
*********************************

77. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 5663252-5663284, mismatch: 0, identity: 1.0

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgatttcc	Protospacer
*********************************

78. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 83017-83049, mismatch: 0, identity: 1.0

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgatttcc	Protospacer
*********************************

79. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 5663252-5663284, mismatch: 0, identity: 1.0

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgatttcc	Protospacer
*********************************

80. spacer 5.2|546364|19|NC_010296|CRT matches to position: 1485334-1485352, mismatch: 1, identity: 0.947

tcgatccccccttaatccc	CRISPR spacer
tctatccccccttaatccc	Protospacer
** ****************

81. spacer 5.2|546364|19|NC_010296|CRT matches to position: 4223576-4223594, mismatch: 1, identity: 0.947

tcgatccccccttaatccc	CRISPR spacer
tcgatccccccttagtccc	Protospacer
**************.****

82. spacer 5.2|546364|19|NC_010296|CRT matches to position: 5364244-5364262, mismatch: 1, identity: 0.947

tcgatccccccttaatccc	CRISPR spacer
tcgatccctccttaatccc	Protospacer
********.**********

83. spacer 5.4|546438|19|NC_010296|CRT matches to position: 1975549-1975567, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

84. spacer 5.4|546438|19|NC_010296|CRT matches to position: 2340157-2340175, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

85. spacer 5.4|546438|19|NC_010296|CRT matches to position: 2878703-2878721, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

86. spacer 5.4|546438|19|NC_010296|CRT matches to position: 3845455-3845473, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

87. spacer 5.4|546438|19|NC_010296|CRT matches to position: 3845492-3845510, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

88. spacer 5.4|546438|19|NC_010296|CRT matches to position: 3845529-3845547, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

89. spacer 5.4|546438|19|NC_010296|CRT matches to position: 5083858-5083876, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

90. spacer 5.4|546438|19|NC_010296|CRT matches to position: 5277984-5278002, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

91. spacer 5.4|546438|19|NC_010296|CRT matches to position: 5347566-5347584, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

92. spacer 5.4|546438|19|NC_010296|CRT matches to position: 5733075-5733093, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

93. spacer 5.4|546438|19|NC_010296|CRT matches to position: 5795368-5795386, mismatch: 1, identity: 0.947

ccgatccccccttaatccc	CRISPR spacer
ccgatccccccttagtccc	Protospacer
**************.****

94. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 1807024-1807051, mismatch: 1, identity: 0.964

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttttgccccct	Protospacer
*******************.********

95. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 3243028-3243055, mismatch: 1, identity: 0.964

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttatgccccct	Protospacer
******************* ********

96. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 3244257-3244284, mismatch: 1, identity: 0.964

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttatgccccct	Protospacer
******************* ********

97. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 3710989-3711016, mismatch: 1, identity: 0.964

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttatgccccct	Protospacer
******************* ********

98. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 4149648-4149675, mismatch: 1, identity: 0.964

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttatgccccct	Protospacer
******************* ********

99. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 4454381-4454408, mismatch: 1, identity: 0.964

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttatgccccct	Protospacer
******************* ********

100. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 5624197-5624224, mismatch: 1, identity: 0.964

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagccgatttatgccccct	Protospacer
******************* ********

101. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 309036-309072, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaactcccg	Protospacer
******************************** ****

102. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 347049-347085, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgtccg	Protospacer
*********************************.***

103. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 587675-587711, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacacccg	Protospacer
********************************.****

104. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1051072-1051108, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaactcccg	Protospacer
******************************** ****

105. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1164244-1164280, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccgacgcccg	Protospacer
*****************************.*******

106. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 1797311-1797347, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacgaccg	Protospacer
********************************* ***

107. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 2617681-2617717, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacccccg	Protospacer
******************************** ****

108. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3093968-3094004, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacacccg	Protospacer
********************************.****

109. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3162674-3162710, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagtatgaaacccaacgcccg	Protospacer
*******************.*****************

110. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3414059-3414095, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaactcccg	Protospacer
******************************** ****

111. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3465592-3465628, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacacccg	Protospacer
********************************.****

112. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3711857-3711893, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaactcccg	Protospacer
******************************** ****

113. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 3995683-3995719, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagtatgaaacccaacgcccg	Protospacer
*******************.*****************

114. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 4854216-4854252, mismatch: 1, identity: 0.973

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagcatgaaacccaacacccg	Protospacer
********************************.****

115. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 225128-225152, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

116. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1074608-1074632, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

117. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1389885-1389909, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

118. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1661224-1661248, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

119. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1797573-1797597, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

120. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1975551-1975575, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

121. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2151589-2151613, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

122. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2190689-2190713, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

123. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2190726-2190750, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

124. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2354142-2354166, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

125. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2577428-2577452, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

126. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2855244-2855268, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

127. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3091288-3091312, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

128. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3217869-3217893, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

129. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3361991-3362015, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

130. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3542991-3543015, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

131. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3845420-3845444, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

132. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3845457-3845481, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

133. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3845494-3845518, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

134. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3845531-3845555, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

135. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3915514-3915538, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

136. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4239761-4239785, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

137. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4698668-4698692, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

138. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4767142-4767166, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

139. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4826386-4826410, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

140. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4977640-4977664, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

141. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5083850-5083874, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

142. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5364283-5364307, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

143. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5474710-5474734, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

144. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5646727-5646751, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

145. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5646763-5646787, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

146. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5682691-5682715, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttaat	Protospacer
************.************

147. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5733077-5733101, mismatch: 1, identity: 0.96

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttagtccccccttgat	Protospacer
**********************.**

148. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 1786524-1786572, mismatch: 1, identity: 0.98

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccggtaggcggggggat	Protospacer
***********************************.*************

149. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 1786561-1786609, mismatch: 1, identity: 0.98

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatcccccttgataaggggggtgccggtaggcggggggat	Protospacer
***********************************.*************

150. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4972351-4972399, mismatch: 1, identity: 0.98

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatccgccttgataaggggggtgccgataggcggggggat	Protospacer
************** **********************************

151. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4972388-4972436, mismatch: 1, identity: 0.98

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatccgccttgataaggggggtgccgataggcggggggat	Protospacer
************** **********************************

152. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 3845423-3845471, mismatch: 1, identity: 0.98

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttagtccccccttgataaggggggtgccgatccccccttagtc	Protospacer
**********************************************.**

153. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 3845460-3845508, mismatch: 1, identity: 0.98

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttagtccccccttgataaggggggtgccgatccccccttagtc	Protospacer
**********************************************.**

154. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 3845497-3845545, mismatch: 1, identity: 0.98

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttagtccccccttgataaggggggtgccgatccccccttagtc	Protospacer
**********************************************.**

155. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 310007-310039, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

156. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 2605441-2605473, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

157. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 5665885-5665917, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

158. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 310007-310039, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

159. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 2605441-2605473, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

160. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 5665885-5665917, mismatch: 1, identity: 0.97

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccgatttcc	Protospacer
***********.*********************

161. spacer 5.2|546364|19|NC_010296|CRT matches to position: 2778633-2778651, mismatch: 2, identity: 0.895

tcgatccccccttaatccc	CRISPR spacer
tcgattctcccttaatccc	Protospacer
*****.*.***********

162. spacer 5.4|546438|19|NC_010296|CRT matches to position: 2289924-2289942, mismatch: 2, identity: 0.895

ccgatccccccttaatccc	CRISPR spacer
ccgattcccccttagtccc	Protospacer
*****.********.****

163. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 632681-632708, mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagcctatttatgccccct	Protospacer
************** **** ********

164. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 759411-759438, mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagtcgatttatgccccct	Protospacer
************.****** ********

165. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 1879047-1879074, mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagcctatttatgccccct	Protospacer
************** **** ********

166. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 3262259-3262286, mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagcctatttatgccccct	Protospacer
************** **** ********

167. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 3377991-3378018, mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagcctatttatgccccct	Protospacer
************** **** ********

168. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 5110934-5110961, mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagcctatttatgccccct	Protospacer
************** **** ********

169. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to position: 5634997-5635024, mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagtcgatttatgccccct	Protospacer
************.****** ********

170. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 995671-995707, mismatch: 2, identity: 0.946

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggtttggttgaagcatgaaatccaacgcccg	Protospacer
********** ***************.**********

171. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to position: 2126077-2126113, mismatch: 2, identity: 0.946

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
aacgtaggttgggttgaagtatgaaacccaacccccg	Protospacer
*******************.************ ****

172. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 151400-151424, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttgatccccccttaat	Protospacer
***********..************

173. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 237822-237846, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

174. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 403667-403691, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

175. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 404249-404273, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

176. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 700491-700515, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatcctcccttaat	Protospacer
************.***.********

177. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1370666-1370690, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

178. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1761580-1761604, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

179. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1797536-1797560, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

180. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1797610-1797634, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatcccccctttat	Protospacer
************.********* **

181. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 1979031-1979055, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

182. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2289926-2289950, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gattcccccttagtccccccttgat	Protospacer
***.******************.**

183. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2354105-2354129, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

184. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2407121-2407145, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

185. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2569721-2569745, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

186. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2622227-2622251, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

187. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 2778657-2778681, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

188. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3005425-3005449, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

189. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3005457-3005481, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

190. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3541352-3541376, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

191. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3541389-3541413, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

192. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3541426-3541450, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

193. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 3541463-3541487, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

194. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4211781-4211805, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

195. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 4993756-4993780, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

196. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5277949-5277973, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

197. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5354023-5354047, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

198. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5364246-5364270, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccctccttaatccccccttaat	Protospacer
******.*****.************

199. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5514512-5514536, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

200. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5514549-5514573, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

201. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to position: 5823419-5823443, mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

202. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4972277-4972325, mismatch: 2, identity: 0.959

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatctaccttgataaggggggtgccgataggcggggggat	Protospacer
*************. **********************************

203. spacer 32.1|5076950|49|NC_010296|CRISPRCasFinder matches to position: 4972314-4972362, mismatch: 2, identity: 0.959

aggcggggggatcccccttgataaggggggtgccgataggcggggggat	CRISPR spacer
aggcggggggatctaccttgataaggggggtgccgataggcggggggat	Protospacer
*************. **********************************

204. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 2190692-2190740, mismatch: 2, identity: 0.959

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttaatccccccttaataaggggggtgccgatccccccttaatc	Protospacer
*********.*********.*****************************

205. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 2354108-2354156, mismatch: 2, identity: 0.959

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttaatccccccttgataaggggggtgctgatccccccttaatc	Protospacer
*********.***********************.***************

206. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 3541362-3541410, mismatch: 2, identity: 0.959

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttaatccccccttgataaggggggtgtcgatccccccttaatc	Protospacer
*********.**********************.****************

207. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 3541399-3541447, mismatch: 2, identity: 0.959

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttaatccccccttgataaggggggtgtcgatccccccttaatc	Protospacer
*********.**********************.****************

208. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 3541436-3541484, mismatch: 2, identity: 0.959

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttaatccccccttgataaggggggtgtcgatccccccttaatc	Protospacer
*********.**********************.****************

209. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 5277952-5278000, mismatch: 2, identity: 0.959

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttaatccccccttgataaggggggtgccgatccccccttagtc	Protospacer
*********.************************************.**

210. spacer 32.2|5077024|49|NC_010296|CRISPRCasFinder matches to position: 5514515-5514563, mismatch: 2, identity: 0.959

ccccccttagtccccccttgataaggggggtgccgatccccccttaatc	CRISPR spacer
ccccccttaatccccccttgataaggggggtgtcgatccccccttaatc	Protospacer
*********.**********************.****************

211. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 309995-310027, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

212. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 2605453-2605485, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

213. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 3837018-3837050, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

214. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 3837030-3837062, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

215. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 3837042-3837074, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

216. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 5603455-5603487, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgcgttcc	Protospacer
***************************  ****

217. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to position: 5663180-5663212, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

218. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 309995-310027, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

219. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 2605453-2605485, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

220. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 3837018-3837050, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

221. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 3837030-3837062, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

222. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 3837042-3837074, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

223. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 5603455-5603487, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttaccgcgttcc	Protospacer
***************************  ****

224. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to position: 5663180-5663212, mismatch: 2, identity: 0.939

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttaccaatttccttaccaatttcc	Protospacer
***********.**************.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010296_20	20.2|2814883|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2814883-2814917	35	LC425523	Uncultured phage DNA, contig: NODE636	11672-11706	0	1.0
NC_010296_20	20.6|2815173|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815173-2815207	35	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	9352-9386	0	1.0
NC_010296_20	20.23|2816394|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2816394-2816427	34	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	107457-107490	0	1.0
NC_010296_20	20.27|2816682|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2816682-2816715	34	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	37131-37164	0	1.0
NC_010296_20	20.30|2816896|39|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2816896-2816934	39	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	3871-3909	0	1.0
NC_010296_20	20.31|2816972|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2816972-2817006	35	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	19051-19085	0	1.0
NC_010296_20	20.31|2816972|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2816972-2817006	35	LC425517	Uncultured phage DNA, contig: NODE382	8976-9010	0	1.0
NC_010296_20	20.48|2818196|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818196-2818229	34	LC425515	Uncultured phage DNA, contig: NODE375	19612-19645	0	1.0
NC_010296_20	20.56|2818771|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818771-2818806	36	LC425515	Uncultured phage DNA, contig: NODE375	6291-6326	0	1.0
NC_010296_20	20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820283-2820316	34	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	16155-16188	0	1.0
NC_010296_20	20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820283-2820316	34	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	16155-16188	0	1.0
NC_010296_20	20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820283-2820316	34	LC425517	Uncultured phage DNA, contig: NODE382	10947-10980	0	1.0
NC_010296_20	20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820283-2820316	34	LC425517	Uncultured phage DNA, contig: NODE382	10947-10980	0	1.0
NC_010296_21	21.3|2823213|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2823213-2823248	36	LC425514	Uncultured phage DNA, contig: NODE331	9296-9331	0	1.0
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	89932-89965	0	1.0
NC_010296_22	22.33|2828582|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828582-2828617	36	MT840188	Bacteriophage sp. contig_37 genomic sequence	8188-8223	0	1.0
NC_010296_22	22.33|2828582|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828582-2828617	36	LC425514	Uncultured phage DNA, contig: NODE331	6469-6504	0	1.0
NC_010296_20	20.13|2815679|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815679-2815713	35	MT840186	Bacteriophage sp. contig_1047 genomic sequence	10586-10620	1	0.971
NC_010296_20	20.15|2815824|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815824-2815858	35	LC425526	Uncultured phage DNA, contig: NODE982	4236-4270	1	0.971
NC_010296_20	20.47|2818124|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818124-2818158	35	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	27969-28003	1	0.971
NC_010296_20	20.49|2818267|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818267-2818301	35	MT840188	Bacteriophage sp. contig_37 genomic sequence	8617-8651	1	0.971
NC_010296_20	20.50|2818339|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818339-2818373	35	LC425515	Uncultured phage DNA, contig: NODE375	3137-3171	1	0.971
NC_010296_20	20.53|2818556|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818556-2818591	36	LC425515	Uncultured phage DNA, contig: NODE375	5200-5235	1	0.972
NC_010296_20	20.59|2818988|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818988-2819022	35	MT840188	Bacteriophage sp. contig_37 genomic sequence	2194-2228	1	0.971
NC_010296_20	20.59|2818988|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818988-2819022	35	LC425514	Uncultured phage DNA, contig: NODE331	1851-1885	1	0.971
NC_010296_20	20.73|2819995|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819995-2820031	37	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	27242-27278	1	0.973
NC_010296_20	20.97|2821730|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821730-2821764	35	LC425515	Uncultured phage DNA, contig: NODE375	5038-5072	1	0.971
NC_010296_21	21.4|2823286|37|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2823286-2823322	37	LC425515	Uncultured phage DNA, contig: NODE375	7901-7937	1	0.973
NC_010296_21	21.20|2824453|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2824453-2824487	35	LC425515	Uncultured phage DNA, contig: NODE375	12942-12976	1	0.971
NC_010296_22	22.4|2826487|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2826487-2826521	35	NC_001597	Microcystis aeruginosa plasmid pMA2 DNA, complete sequence	4323-4357	1	0.971
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NZ_CP046974	Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence	23186-23213	2	0.929
NC_010296_20	20.4|2815028|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815028-2815062	35	LC425525	Uncultured phage DNA, contig: NODE869	6830-6864	2	0.943
NC_010296_20	20.4|2815028|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815028-2815062	35	MT840186	Bacteriophage sp. contig_1047 genomic sequence	17731-17765	2	0.943
NC_010296_20	20.11|2815534|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815534-2815567	34	LC425517	Uncultured phage DNA, contig: NODE382	10268-10301	2	0.941
NC_010296_20	20.13|2815679|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815679-2815713	35	LC425522	Uncultured phage DNA, contig: NODE620	2179-2213	2	0.943
NC_010296_20	20.16|2815896|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815896-2815929	34	LC425525	Uncultured phage DNA, contig: NODE869	3229-3262	2	0.941
NC_010296_20	20.16|2815896|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815896-2815929	34	MT840186	Bacteriophage sp. contig_1047 genomic sequence	14438-14471	2	0.941
NC_010296_20	20.22|2816323|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2816323-2816356	34	LC425525	Uncultured phage DNA, contig: NODE869	7091-7124	2	0.941
NC_010296_20	20.49|2818267|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818267-2818301	35	LC425514	Uncultured phage DNA, contig: NODE331	7010-7044	2	0.943
NC_010296_20	20.55|2818700|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818700-2818733	34	LC425515	Uncultured phage DNA, contig: NODE375	6035-6068	2	0.941
NC_010296_20	20.63|2819275|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819275-2819309	35	LC425526	Uncultured phage DNA, contig: NODE982	500-534	2	0.943
NC_010296_20	20.63|2819275|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819275-2819309	35	LC425519	Uncultured phage DNA, contig: NODE671	9585-9619	2	0.943
NC_010296_20	20.83|2820715|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820715-2820749	35	LC425520	Uncultured phage DNA, contig: NODE385	3238-3272	2	0.943
NC_010296_20	20.105|2822307|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2822307-2822341	35	LC425519	Uncultured phage DNA, contig: NODE671	5680-5714	2	0.943
NC_010296_21	21.3|2823213|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2823213-2823248	36	MT840188	Bacteriophage sp. contig_37 genomic sequence	10906-10941	2	0.944
NC_010296_22	22.6|2826631|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2826631-2826665	35	LC425520	Uncultured phage DNA, contig: NODE385	2939-2973	2	0.943
NC_010296_22	22.7|2826703|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2826703-2826736	34	MT840190	Bacteriophage sp. contig_8960 genomic sequence	3289-3322	2	0.941
NC_010296_22	22.13|2827133|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827133-2827168	36	NZ_CP046059	Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence	7630-7665	2	0.944
NC_010296_22	22.13|2827133|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827133-2827168	36	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	17119-17154	2	0.944
NC_010296_22	22.27|2828145|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828145-2828180	36	MT840188	Bacteriophage sp. contig_37 genomic sequence	8764-8799	2	0.944
NC_010296_22	22.27|2828145|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828145-2828180	36	LC425514	Uncultured phage DNA, contig: NODE331	7157-7192	2	0.944
NC_010296_22	22.29|2828290|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828290-2828324	35	LC425515	Uncultured phage DNA, contig: NODE375	10771-10805	2	0.943
NC_010296_22	22.32|2828508|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828508-2828544	37	LC425515	Uncultured phage DNA, contig: NODE375	11321-11357	2	0.946
NC_010296_22	22.38|2828946|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828946-2828980	35	NZ_CP046059	Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence	1687-1721	2	0.943
NC_010296_22	22.38|2828946|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828946-2828980	35	MT840190	Bacteriophage sp. contig_8960 genomic sequence	3403-3437	2	0.943
NC_010296_22	22.40|2829090|40|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2829090-2829129	40	MT840190	Bacteriophage sp. contig_8960 genomic sequence	14230-14269	2	0.95
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	60785-60809	2	0.92
NC_010296_7	7.1|1085311|28|NC_010296|CRISPRCasFinder	1085311-1085338	28	NZ_CP046974	Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence	7134-7161	3	0.893
NC_010296_20	20.16|2815896|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815896-2815929	34	LC425522	Uncultured phage DNA, contig: NODE620	6036-6069	3	0.912
NC_010296_20	20.58|2818915|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818915-2818950	36	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	27604-27639	3	0.917
NC_010296_20	20.67|2819563|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819563-2819597	35	MT840186	Bacteriophage sp. contig_1047 genomic sequence	8410-8444	3	0.914
NC_010296_21	21.2|2823140|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2823140-2823175	36	LC425515	Uncultured phage DNA, contig: NODE375	6033-6068	3	0.917
NC_010296_21	21.11|2823794|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2823794-2823828	35	LC425526	Uncultured phage DNA, contig: NODE982	423-457	3	0.914
NC_010296_21	21.17|2824229|37|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2824229-2824265	37	MT840186	Bacteriophage sp. contig_1047 genomic sequence	25527-25563	3	0.919
NC_010296_22	22.34|2828655|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2828655-2828690	36	LC425515	Uncultured phage DNA, contig: NODE375	5426-5461	3	0.917
NC_010296_34	34.1|5383085|33|NC_010296|CRISPRCasFinder	5383085-5383117	33	NZ_CP043059	Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence	48568-48600	3	0.909
NC_010296_35	35.1|5384608|33|NC_010296|CRISPRCasFinder	5384608-5384640	33	NZ_CP043059	Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence	48568-48600	3	0.909
NC_010296_20	20.79|2820429|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820429-2820462	34	LC425517	Uncultured phage DNA, contig: NODE382	10373-10406	4	0.882
NC_010296_20	20.105|2822307|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2822307-2822341	35	MT840187	Bacteriophage sp. Joined_contig_543 genomic sequence	16679-16713	4	0.886
NC_010296_21	21.20|2824453|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2824453-2824487	35	LC425515	Uncultured phage DNA, contig: NODE375	13062-13096	4	0.886
NC_010296_21	21.20|2824453|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2824453-2824487	35	LC425515	Uncultured phage DNA, contig: NODE375	13182-13216	4	0.886
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	AP017992	Planktothrix agardhii NIES-204 plasmid plasmid1 DNA, complete sequence	92427-92451	4	0.84
NC_010296_20	20.84|2820787|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820787-2820823	37	LC425520	Uncultured phage DNA, contig: NODE385	13548-13584	5	0.865
NC_010296_27	27.1|4276012|25|NC_010296|CRISPRCasFinder	4276012-4276036	25	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	39017-39041	5	0.8
NC_010296_22	22.14|2827206|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827206-2827240	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	269881-269915	6	0.829
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NC_008500	Streptococcus thermophilus LMD-9 plasmid 1, complete sequence	398-431	6	0.824
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NC_005323	Streptococcus thermophilus SMQ-173 plasmid pSMQ173b, complete sequence	77-110	6	0.824
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NC_025196	Streptococcus thermophilus pER1-2 plasmid ORF1, ORF2, ORF3, ORF4 and ORF5 DNA	36-69	6	0.824
NC_010296_30	30.1|4596204|30|NC_010296|CRISPRCasFinder	4596204-4596233	30	NC_009930	Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence	166416-166445	6	0.8
NC_010296_30	30.1|4596204|30|NC_010296|CRISPRCasFinder	4596204-4596233	30	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	507549-507578	6	0.8
NC_010296_30	30.1|4596204|30|NC_010296|CRISPRCasFinder	4596204-4596233	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4689562-4689591	6	0.8
NC_010296_15	15.1|2382069|30|NC_010296|CRISPRCasFinder	2382069-2382098	30	MK620899	Gordonia phage GodonK, complete genome	45211-45240	7	0.767
NC_010296_15	15.1|2382069|30|NC_010296|CRISPRCasFinder	2382069-2382098	30	MN096369	Gordonia phage Phendrix, complete genome	45073-45102	7	0.767
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_CP041048	Citrobacter sp. CF971 plasmid pBM527-2, complete sequence	93730-93761	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	MN783744	Klebsiella oxytoca plasmid pFDL-VIM, complete sequence	137499-137530	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_CP022274	Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence	132095-132126	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_CP042536	Citrobacter freundii strain E51 plasmid pE51_002, complete sequence	101044-101075	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_CP034714	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence	102148-102179	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_CP010360	Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence	126669-126700	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_CP012168	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence	132304-132335	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	MN783743	Escherichia coli plasmid pGA_VIM, complete sequence	148757-148788	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_CP034084	Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence	90593-90624	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MH220284	Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence	89490-89521	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MG228427	Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence	89534-89565	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MG550958	Escherichia coli strain G3216 plasmid pG3216.2, complete sequence	7965-7996	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MH325469	Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence	206950-206981	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MH325468	Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence	123305-123336	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MH594478	Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence	115673-115704	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MH594477	Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence	116437-116468	7	0.781
NC_010296_20	20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817339-2817370	32	NZ_MG053108	Citrobacter freundii strain 33587 plasmid pCf587, complete sequence	167880-167911	7	0.781
NC_010296_20	20.52|2818483|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818483-2818518	36	LC425515	Uncultured phage DNA, contig: NODE375	268-303	7	0.806
NC_010296_20	20.86|2820935|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2820935-2820968	34	MG592541	Vibrio phage 1.174.O._10N.261.55.A8, partial genome	104-137	7	0.794
NC_010296_30	30.1|4596204|30|NC_010296|CRISPRCasFinder	4596204-4596233	30	NZ_CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	192972-193001	7	0.767
NC_010296_30	30.1|4596204|30|NC_010296|CRISPRCasFinder	4596204-4596233	30	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	235445-235474	7	0.767
NC_010296_17	17.1|2623144|38|NC_010296|CRISPRCasFinder	2623144-2623181	38	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	109278-109315	8	0.789
NC_010296_20	20.6|2815173|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2815173-2815207	35	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	16186-16220	8	0.771
NC_010296_20	20.52|2818483|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2818483-2818518	36	MT840189	Bacteriophage sp. Joined_contig_348 genomic sequence	7621-7656	8	0.778
NC_010296_21	21.8|2823577|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder	2823577-2823611	35	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	360065-360099	8	0.771
NC_010296_22	22.15|2827278|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827278-2827312	35	NZ_CP039899	Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence	372089-372123	8	0.771
NC_010296_22	22.15|2827278|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827278-2827312	35	NZ_CP039890	Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence	372089-372123	8	0.771
NC_010296_17	17.1|2623144|38|NC_010296|CRISPRCasFinder	2623144-2623181	38	NZ_CP025929	Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence	109280-109317	9	0.763
NC_010296_20	20.88|2821083|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821083-2821116	34	MN856008	Siphoviridae sp. isolate 424, complete genome	21276-21309	9	0.735
NC_010296_20	20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821874-2821906	33	NC_041887	Rhodococcus phage Weasels2, complete genome	70331-70363	9	0.727
NC_010296_20	20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821874-2821906	33	NC_014839	Pantoea sp. At-9b plasmid pPAT9B02, complete sequence	146961-146993	9	0.727
NC_010296_20	20.100|2821944|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821944-2821978	35	NC_041887	Rhodococcus phage Weasels2, complete genome	70329-70363	9	0.743
NC_010296_22	22.9|2826845|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2826845-2826879	35	NC_013518	Sebaldella termitidis ATCC 33386 plasmid pSTERM01, complete sequence	15489-15523	9	0.743
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NC_019401	Cronobacter phage vB_CsaM_GAP32, complete genome	261446-261479	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	89340-89373	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	12730-12763	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	70174-70207	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	11543-11576	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	53047-53080	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP017417	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence	42972-43005	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	28828-28861	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	112091-112124	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	166673-166706	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP044176	Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence	72615-72648	9	0.735
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	94622-94655	9	0.735
NC_010296_30	30.1|4596204|30|NC_010296|CRISPRCasFinder	4596204-4596233	30	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	360300-360329	9	0.7
NC_010296_20	20.22|2816323|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2816323-2816356	34	MK994522	Methanobacterium virus PhiF1, complete genome	44989-45022	10	0.706
NC_010296_20	20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819204-2819237	34	KY883651	Vibrio phage JSF20, complete genome	39152-39185	10	0.706
NC_010296_20	20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819204-2819237	34	KY883653	Vibrio phage JSF34, complete genome	39152-39185	10	0.706
NC_010296_20	20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819204-2819237	34	KY883652	Vibrio phage JSF24, complete genome	39152-39185	10	0.706
NC_010296_20	20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819204-2819237	34	NC_013651	Vibrio phage N4, complete genome	18-51	10	0.706
NC_010296_20	20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819204-2819237	34	FJ409640	Vibriophage N4, complete genome	18-51	10	0.706
NC_010296_20	20.63|2819275|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819275-2819309	35	MN692957	Marine virus AFVG_117M60, complete genome	959-993	10	0.714
NC_010296_20	20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821874-2821906	33	KR233165	Escherichia phage PEC04, complete genome	114745-114777	10	0.697
NC_010296_20	20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821874-2821906	33	MT176424	Citrobacter phage PhiZZ6, complete genome	122575-122607	10	0.697
NC_010296_20	20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821874-2821906	33	MG867727	Escherichia phage vB_EcoM-G28, complete genome	125638-125670	10	0.697
NC_010296_20	20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821874-2821906	33	KF925357	Escherichia phage HY01, complete genome	122070-122102	10	0.697
NC_010296_20	20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2821874-2821906	33	NC_031085	Shigella phage SHBML-50-1, complete genome	124355-124387	10	0.697
NC_010296_23	23.1|2869775|37|NC_010296|CRISPRCasFinder	2869775-2869811	37	NZ_CP026605	Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence	200595-200631	10	0.73
NC_010296_23	23.1|2869775|37|NC_010296|CRISPRCasFinder	2869775-2869811	37	KF356199	Microcystis phage MaMV-DC, complete genome	20185-20221	10	0.73
NC_010296_20	20.40|2817623|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2817623-2817657	35	NZ_CP035695	Vibrio furnissii strain 2419-04 plasmid unnamed1	10871-10905	11	0.686
NC_010296_20	20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819204-2819237	34	KY883648	Vibrio phage JSF35, complete genome	38478-38511	11	0.676
NC_010296_20	20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819204-2819237	34	KY883648	Vibrio phage JSF35, complete genome	38538-38571	11	0.676
NC_010296_20	20.64|2819347|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819347-2819380	34	NZ_CP045561	Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence	139646-139679	11	0.676
NC_010296_20	20.64|2819347|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2819347-2819380	34	NZ_CP014478	Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence	138702-138735	11	0.676
NC_010296_22	22.7|2826703|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2826703-2826736	34	MN694330	Marine virus AFVG_250M1134, complete genome	33693-33726	11	0.676
NC_010296_22	22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827424-2827457	34	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	126451-126484	11	0.676
NC_010296_22	22.21|2827711|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT	2827711-2827746	36	NZ_AP018258	Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome	51873-51908	11	0.694

1. spacer 20.2|2814883|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425523 (Uncultured phage DNA, contig: NODE636) position: , mismatch: 0, identity: 1.0

atggattttacatgggatgaagaaaaatcaaaatt	CRISPR spacer
atggattttacatgggatgaagaaaaatcaaaatt	Protospacer
***********************************

2. spacer 20.6|2815173|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 0, identity: 1.0

aacttaatcctctaaaaaatcatgagagtcataga	CRISPR spacer
aacttaatcctctaaaaaatcatgagagtcataga	Protospacer
***********************************

3. spacer 20.23|2816394|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

cggcattctctatcggcgcgtctccgatagactc	CRISPR spacer
cggcattctctatcggcgcgtctccgatagactc	Protospacer
**********************************

4. spacer 20.27|2816682|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 0, identity: 1.0

ctaaaattactagaagggggcgtggtatgattag	CRISPR spacer
ctaaaattactagaagggggcgtggtatgattag	Protospacer
**********************************

5. spacer 20.30|2816896|39|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 0, identity: 1.0

gatgccattggtgagccgtctttatctgatgatgaaagg	CRISPR spacer
gatgccattggtgagccgtctttatctgatgatgaaagg	Protospacer
***************************************

6. spacer 20.31|2816972|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 0, identity: 1.0

cttatcccttagcgaaaaaaagcagattgcctctt	CRISPR spacer
cttatcccttagcgaaaaaaagcagattgcctctt	Protospacer
***********************************

7. spacer 20.31|2816972|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425517 (Uncultured phage DNA, contig: NODE382) position: , mismatch: 0, identity: 1.0

cttatcccttagcgaaaaaaagcagattgcctctt	CRISPR spacer
cttatcccttagcgaaaaaaagcagattgcctctt	Protospacer
***********************************

8. spacer 20.48|2818196|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 0, identity: 1.0

tttgattggaattgatactcaatttctctttctc	CRISPR spacer
tttgattggaattgatactcaatttctctttctc	Protospacer
**********************************

9. spacer 20.56|2818771|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 0, identity: 1.0

aacgattttaaggattccggggatgcagtctcgctc	CRISPR spacer
aacgattttaaggattccggggatgcagtctcgctc	Protospacer
************************************

10. spacer 20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 0, identity: 1.0

ttaaaagcaggtagttttaactacctgcttgatt	CRISPR spacer
ttaaaagcaggtagttttaactacctgcttgatt	Protospacer
**********************************

11. spacer 20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 0, identity: 1.0

ttaaaagcaggtagttttaactacctgcttgatt	CRISPR spacer
ttaaaagcaggtagttttaactacctgcttgatt	Protospacer
**********************************

12. spacer 20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425517 (Uncultured phage DNA, contig: NODE382) position: , mismatch: 0, identity: 1.0

ttaaaagcaggtagttttaactacctgcttgatt	CRISPR spacer
ttaaaagcaggtagttttaactacctgcttgatt	Protospacer
**********************************

13. spacer 20.77|2820283|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425517 (Uncultured phage DNA, contig: NODE382) position: , mismatch: 0, identity: 1.0

ttaaaagcaggtagttttaactacctgcttgatt	CRISPR spacer
ttaaaagcaggtagttttaactacctgcttgatt	Protospacer
**********************************

14. spacer 21.3|2823213|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to LC425514 (Uncultured phage DNA, contig: NODE331) position: , mismatch: 0, identity: 1.0

tgctaatcattcttttaaatctaattcagtaaactt	CRISPR spacer
tgctaatcattcttttaaatctaattcagtaaactt	Protospacer
************************************

15. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
actatggtataatgaaagtacaaacaaagaaaag	Protospacer
**********************************

16. spacer 22.33|2828582|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840188 (Bacteriophage sp. contig_37 genomic sequence) position: , mismatch: 0, identity: 1.0

gccaataaatccaattctcgccggcgcgtcttgaca	CRISPR spacer
gccaataaatccaattctcgccggcgcgtcttgaca	Protospacer
************************************

17. spacer 22.33|2828582|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425514 (Uncultured phage DNA, contig: NODE331) position: , mismatch: 0, identity: 1.0

gccaataaatccaattctcgccggcgcgtcttgaca	CRISPR spacer
gccaataaatccaattctcgccggcgcgtcttgaca	Protospacer
************************************

18. spacer 20.13|2815679|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 1, identity: 0.971

taatcacttttattgctgactttgctgtacatctt	CRISPR spacer
taatcacttttattgctgacgttgctgtacatctt	Protospacer
******************** **************

19. spacer 20.15|2815824|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 1, identity: 0.971

tcctatggatgggcatcggagggtattagcttggt	CRISPR spacer
ccctatggatgggcatcggagggtattagcttggt	Protospacer
.**********************************

20. spacer 20.47|2818124|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 1, identity: 0.971

cgatttccccaaaaatacgatcttctttgtttagg	CRISPR spacer
cgatttccccaaaaatacgatcttctttatttagg	Protospacer
****************************.******

21. spacer 20.49|2818267|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840188 (Bacteriophage sp. contig_37 genomic sequence) position: , mismatch: 1, identity: 0.971

caattttccctaaaacaacatctcgatcatgattc	CRISPR spacer
caattttccctaaaacaatatctcgatcatgattc	Protospacer
******************.****************

22. spacer 20.50|2818339|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.971

gggcttaacgcgatcgggttcctaaccgactttca	CRISPR spacer
gggcttaacgcgatcgggtttctaaccgactttca	Protospacer
********************.**************

23. spacer 20.53|2818556|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.972

gtgatcaagattaatcgaccggggaattaaattagc	CRISPR spacer
gtgatcaagattaatcgaccgaggaattaaattagc	Protospacer
*********************.**************

24. spacer 20.59|2818988|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840188 (Bacteriophage sp. contig_37 genomic sequence) position: , mismatch: 1, identity: 0.971

tccacaacgacgacgaccccttaacagcataaatc	CRISPR spacer
tccacaacgaggacgaccccttaacagcataaatc	Protospacer
********** ************************

25. spacer 20.59|2818988|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425514 (Uncultured phage DNA, contig: NODE331) position: , mismatch: 1, identity: 0.971

tccacaacgacgacgaccccttaacagcataaatc	CRISPR spacer
tccacaatgacgacgaccccttaacagcataaatc	Protospacer
*******.***************************

26. spacer 20.73|2819995|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 1, identity: 0.973

ttccctatatcgcttctttgagcggggagatttaatt	CRISPR spacer
tttcctatatcgcttctttgagcggggagatttaatt	Protospacer
**.**********************************

27. spacer 20.97|2821730|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.971

ctcaaacaaatcggctaaatcaaaactccagtttt	CRISPR spacer
ctcaaacaaatcggctaaatcaaaactccaatttt	Protospacer
******************************.****

28. spacer 21.4|2823286|37|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.973

gtgattgaggtgtaggtagttcccgcccatccaactg	CRISPR spacer
gtgattgaggtgtaggcagttcccgcccatccaactg	Protospacer
****************.********************

29. spacer 21.20|2824453|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 1, identity: 0.971

cgcctactaaattcccctcatcttgaattgatagc	CRISPR spacer
cgcctactaaattcccctcatcctgaattgatagc	Protospacer
**********************.************

30. spacer 22.4|2826487|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_001597 (Microcystis aeruginosa plasmid pMA2 DNA, complete sequence) position: , mismatch: 1, identity: 0.971

aggcgggccgggagacagcctttttctttgatcag	CRISPR spacer
aggcgggccgggagatagcctttttctttgatcag	Protospacer
***************.*******************

31. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to NZ_CP046974 (Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence) position: , mismatch: 2, identity: 0.929

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagtcgatttatgccccct	Protospacer
************.****** ********

32. spacer 20.4|2815028|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425525 (Uncultured phage DNA, contig: NODE869) position: , mismatch: 2, identity: 0.943

caatggcaagtggagaggggtgtttatgatttaaa	CRISPR spacer
caatggcaagtggaaaggggtgtttatgattcaaa	Protospacer
**************.****************.***

33. spacer 20.4|2815028|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 2, identity: 0.943

caatggcaagtggagaggggtgtttatgatttaaa	CRISPR spacer
cagtggcaagtggagaggggtgtttatgattcaaa	Protospacer
**.****************************.***

34. spacer 20.11|2815534|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425517 (Uncultured phage DNA, contig: NODE382) position: , mismatch: 2, identity: 0.941

agaaatgtgtcgaattgggcagtttattgaccta	CRISPR spacer
tgaaatgtgtcgaattgggcagtttatcgaccta	Protospacer
 **************************.******

35. spacer 20.13|2815679|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425522 (Uncultured phage DNA, contig: NODE620) position: , mismatch: 2, identity: 0.943

taatcac-ttttattgctgactttgctgtacatctt	CRISPR spacer
-aatcactttttattgctgactttgctatacatctt	Protospacer
 ****** *******************.********

36. spacer 20.16|2815896|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425525 (Uncultured phage DNA, contig: NODE869) position: , mismatch: 2, identity: 0.941

tcgattaatcatcctaaagatatcggcagaaccg	CRISPR spacer
tcgattaatcatcctaaaaatatcggcagaacca	Protospacer
******************.**************.

37. spacer 20.16|2815896|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 2, identity: 0.941

tcgattaatcatcctaaagatatcggcagaaccg	CRISPR spacer
tcgattaatcatcctaaaaatatcggcagaacca	Protospacer
******************.**************.

38. spacer 20.22|2816323|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425525 (Uncultured phage DNA, contig: NODE869) position: , mismatch: 2, identity: 0.941

aaccctgattctaatgcaagagaattgacttcta	CRISPR spacer
aatcctgattctaatgcaagaggattgacttcta	Protospacer
**.*******************.***********

39. spacer 20.49|2818267|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425514 (Uncultured phage DNA, contig: NODE331) position: , mismatch: 2, identity: 0.943

caattttccctaaaacaacatctcgatcatgattc	CRISPR spacer
caattttccctaaaacaatgtctcgatcatgattc	Protospacer
******************..***************

40. spacer 20.55|2818700|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 2, identity: 0.941

aagttccaatggtacgaaacagcctgggcagacc	CRISPR spacer
aagccccaatggtacgaaacagcctgggcagacc	Protospacer
***..*****************************

41. spacer 20.63|2819275|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 2, identity: 0.943

gttaaagatttaataggcattgtttttactcctaa	CRISPR spacer
gtcagagatttaataggcattgtttttactcctaa	Protospacer
**.*.******************************

42. spacer 20.63|2819275|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425519 (Uncultured phage DNA, contig: NODE671) position: , mismatch: 2, identity: 0.943

gttaaagatttaataggcattgtttttactcctaa-	CRISPR spacer
gttaaagatttaataggcactg-ttttactcctaaa	Protospacer
*******************.** ************ 

43. spacer 20.83|2820715|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425520 (Uncultured phage DNA, contig: NODE385) position: , mismatch: 2, identity: 0.943

attttagacatttttaggtctgtgccaagaatgca	CRISPR spacer
cgtttagacatttttaggtctgtgccaagaatgca	Protospacer
  *********************************

44. spacer 20.105|2822307|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425519 (Uncultured phage DNA, contig: NODE671) position: , mismatch: 2, identity: 0.943

caactcctgctcaacctactaaaatagagaaaata	CRISPR spacer
caattcctgctcaacctattaaaatagagaaaata	Protospacer
***.**************.****************

45. spacer 21.3|2823213|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to MT840188 (Bacteriophage sp. contig_37 genomic sequence) position: , mismatch: 2, identity: 0.944

tgctaatcattcttttaaatctaattcagtaaactt	CRISPR spacer
tactaatcattcttttaaatccaattcagtaaactt	Protospacer
*.*******************.**************

46. spacer 22.6|2826631|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425520 (Uncultured phage DNA, contig: NODE385) position: , mismatch: 2, identity: 0.943

actacacacaaccgaattgtaagtgataatttatc	CRISPR spacer
actacacacaaccaaattctaagtgataatttatc	Protospacer
*************.**** ****************

47. spacer 22.7|2826703|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840190 (Bacteriophage sp. contig_8960 genomic sequence) position: , mismatch: 2, identity: 0.941

ctgacagaacgggttgaatgggaaggtaagccta	CRISPR spacer
ctgaccgaaagggttgaatgggaaggtaagccta	Protospacer
***** *** ************************

48. spacer 22.13|2827133|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046059 (Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.944

tgggagattggaatcacagccgaaaaataggatcga	CRISPR spacer
tgggagatggggatcacagccgaaaaataggatcga	Protospacer
******** **.************************

49. spacer 22.13|2827133|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 2, identity: 0.944

tgggagattggaatcacagccgaaaaataggatcga	CRISPR spacer
tgggaaatgggaatcacagccgaaaaataggatcga	Protospacer
*****.** ***************************

50. spacer 22.27|2828145|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840188 (Bacteriophage sp. contig_37 genomic sequence) position: , mismatch: 2, identity: 0.944

ttttttgtattccgtggaagaatacgaagaaatgaa	CRISPR spacer
ttttttgtattctgtggaagaatacgaggaaatgaa	Protospacer
************.**************.********

51. spacer 22.27|2828145|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425514 (Uncultured phage DNA, contig: NODE331) position: , mismatch: 2, identity: 0.944

ttttttgtattccgtggaagaatacgaagaaatgaa	CRISPR spacer
ttttttgtattctgtggaagaatacgaggaaatgaa	Protospacer
************.**************.********

52. spacer 22.29|2828290|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 2, identity: 0.943

aaagctaggctaatagcggcactgattaaaatttc	CRISPR spacer
aaggctaggctaatagcggcactaattaaaatttc	Protospacer
**.********************.***********

53. spacer 22.32|2828508|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 2, identity: 0.946

ctgccattgtccgcaatggtagccctaagctatctga	CRISPR spacer
ctgccattgtccgcaatggtagccctaaattatctga	Protospacer
****************************..*******

54. spacer 22.38|2828946|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046059 (Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.943

catgattttctaaatattcagctatctctagccga	CRISPR spacer
cgtgattttctaagtattcagctatctctagccga	Protospacer
*.***********.*********************

55. spacer 22.38|2828946|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840190 (Bacteriophage sp. contig_8960 genomic sequence) position: , mismatch: 2, identity: 0.943

catgattttctaaatattcagctatctctagccga	CRISPR spacer
cgtgattttctaagtattcagctatctctagccga	Protospacer
*.***********.*********************

56. spacer 22.40|2829090|40|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840190 (Bacteriophage sp. contig_8960 genomic sequence) position: , mismatch: 2, identity: 0.95

ctcactttaggctagtgtttgccctctcgtgaaaaagcaa	CRISPR spacer
cttactttaggctagtgtttgccctctcgtgaaaaagcac	Protospacer
**.************************************ 

57. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.92

gatccccccttagtccccccttaat	CRISPR spacer
gatccccccttaatccccccttgat	Protospacer
************.*********.**

58. spacer 7.1|1085311|28|NC_010296|CRISPRCasFinder matches to NZ_CP046974 (Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence) position: , mismatch: 3, identity: 0.893

ataaggatttagccgatttctgccccct	CRISPR spacer
ataaggatttagtcgatttatgccccca	Protospacer
************.****** ******* 

59. spacer 20.16|2815896|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425522 (Uncultured phage DNA, contig: NODE620) position: , mismatch: 3, identity: 0.912

tcgattaatcatcctaaagatatcggcagaaccg	CRISPR spacer
tcgattgatcatcctaaaaatatcggcagaacca	Protospacer
******.***********.**************.

60. spacer 20.58|2818915|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 3, identity: 0.917

cccctcatcttgaattgatagcagcgacgcatcatt	CRISPR spacer
gccttcatcttgaattgatagcagcgacgcatcgtt	Protospacer
 **.*****************************.**

61. spacer 20.67|2819563|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 3, identity: 0.914

tgctgaatgaacttatatattgtgatgcctctaga	CRISPR spacer
tgctgaatgaatttatagattgtgatgcctctagc	Protospacer
***********.***** **************** 

62. spacer 21.2|2823140|36|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 3, identity: 0.917

cagcccgaatggtacgagacagcctgggcagaccaa	CRISPR spacer
aagccccaatggtacgaaacagcctgggcagaccaa	Protospacer
 ***** **********.******************

63. spacer 21.11|2823794|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to LC425526 (Uncultured phage DNA, contig: NODE982) position: , mismatch: 3, identity: 0.914

accaagtattttgctggtaaagaaacagacgaatt	CRISPR spacer
accaagtattttgctggtaaagaaatagacgagct	Protospacer
*************************.******..*

64. spacer 21.17|2824229|37|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to MT840186 (Bacteriophage sp. contig_1047 genomic sequence) position: , mismatch: 3, identity: 0.919

tttgaaactggcaatagcgtcggtgtaggagcggcgg	CRISPR spacer
tttgaaactggcaatagtgtcggtgtcggagcggctg	Protospacer
*****************.******** ******** *

65. spacer 22.34|2828655|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 3, identity: 0.917

aacagaaatattgctgatttcgccgctatgccacgc	CRISPR spacer
aacagaaatattgctgatttcgccgctatgccatag	Protospacer
*********************************.. 

66. spacer 34.1|5383085|33|NC_010296|CRISPRCasFinder matches to NZ_CP043059 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence) position: , mismatch: 3, identity: 0.909

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttacctttttct	Protospacer
**************************  ****.

67. spacer 35.1|5384608|33|NC_010296|CRISPRCasFinder matches to NZ_CP043059 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence) position: , mismatch: 3, identity: 0.909

ccaatttccttgccaatttccttaccgatttcc	CRISPR spacer
ccaatttccttgccaatttccttacctttttct	Protospacer
**************************  ****.

68. spacer 20.79|2820429|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425517 (Uncultured phage DNA, contig: NODE382) position: , mismatch: 4, identity: 0.882

cttctacccgcaataatagcgcttcgatctcttg	CRISPR spacer
cttctacccgcaataatagcgcttcgatttccaa	Protospacer
****************************.**. .

69. spacer 20.105|2822307|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840187 (Bacteriophage sp. Joined_contig_543 genomic sequence) position: , mismatch: 4, identity: 0.886

caactcctgctcaacctactaaaatagagaaaata	CRISPR spacer
cgattcctgctcaacctattagaatagagaaaata	Protospacer
*.*.**************.**.*************

70. spacer 21.20|2824453|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 4, identity: 0.886

cgcctactaaattcccctcatcttgaattgatagc	CRISPR spacer
cgcctactaaattcccctcatcctgaattgttggg	Protospacer
**********************.******* *.* 

71. spacer 21.20|2824453|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 4, identity: 0.886

cgcctactaaattcccctcatcttgaattgatagc	CRISPR spacer
cgcctactaaattcccctcatcctgaattgttggg	Protospacer
**********************.******* *.* 

72. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to AP017992 (Planktothrix agardhii NIES-204 plasmid plasmid1 DNA, complete sequence) position: , mismatch: 4, identity: 0.84

gatccccccttagtccccccttaat	CRISPR spacer
tgaccccccttagtccccccttagt	Protospacer
 . ********************.*

73. spacer 20.84|2820787|37|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425520 (Uncultured phage DNA, contig: NODE385) position: , mismatch: 5, identity: 0.865

cgttagtttcaattgaagcatcaagataaatatcatc	CRISPR spacer
cataggttttaattgaagcatcaagataaatgtcatc	Protospacer
*.* .****.*********************.*****

74. spacer 27.1|4276012|25|NC_010296|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 5, identity: 0.8

gatccccccttagtccccccttaat	CRISPR spacer
ttaccccccttagtccccccttatc	Protospacer
   ******************** .

75. spacer 22.14|2827206|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 6, identity: 0.829

ccggcttttttagctccctcagtaatgattattgg	CRISPR spacer
gctgcttttttagctccttcagtaataattaaagg	Protospacer
 * **************.********.****  **

76. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_008500 (Streptococcus thermophilus LMD-9 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.824

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
agcgtggtataataaaagtacaaagaaagaaagg	Protospacer
* ..*********.********** *******.*

77. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_005323 (Streptococcus thermophilus SMQ-173 plasmid pSMQ173b, complete sequence) position: , mismatch: 6, identity: 0.824

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
agcgtggtataataaaagtacaaagaaagaaagg	Protospacer
* ..*********.********** *******.*

78. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_025196 (Streptococcus thermophilus pER1-2 plasmid ORF1, ORF2, ORF3, ORF4 and ORF5 DNA) position: , mismatch: 6, identity: 0.824

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
agcgtggtataataaaagtacaaagaaagaaagg	Protospacer
* ..*********.********** *******.*

79. spacer 30.1|4596204|30|NC_010296|CRISPRCasFinder matches to NC_009930 (Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence) position: , mismatch: 6, identity: 0.8

accctctccggcgatagtggcgatgatatc	CRISPR spacer
aggatgtcgggcgatggtggcgatgatatc	Protospacer
*   * ** ******.**************

80. spacer 30.1|4596204|30|NC_010296|CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 6, identity: 0.8

accctctccggcgatagtggcgatgatatc	CRISPR spacer
accgtctccggcgataggggcgatcgtcgc	Protospacer
*** ************* ****** .*  *

81. spacer 30.1|4596204|30|NC_010296|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

accctctccggcgatagtggcgatgatatc	CRISPR spacer
gcgctatccggcgatactggcgatgacgtc	Protospacer
.* ** ********** *********..**

82. spacer 15.1|2382069|30|NC_010296|CRISPRCasFinder matches to MK620899 (Gordonia phage GodonK, complete genome) position: , mismatch: 7, identity: 0.767

cgtttaatgcgagaacaacgtcaagaaagc	CRISPR spacer
cttcgcagccgagaacaacgtcaaaaaagc	Protospacer
* *.  *  ***************.*****

83. spacer 15.1|2382069|30|NC_010296|CRISPRCasFinder matches to MN096369 (Gordonia phage Phendrix, complete genome) position: , mismatch: 7, identity: 0.767

cgtttaatgcgagaacaacgtcaagaaagc	CRISPR spacer
cttcgcagccgagaacaacgtcaaaaaagc	Protospacer
* *.  *  ***************.*****

84. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041048 (Citrobacter sp. CF971 plasmid pBM527-2, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

85. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MN783744 (Klebsiella oxytoca plasmid pFDL-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

86. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022274 (Citrobacter freundii strain 18-1 plasmid pA18-1, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

87. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042536 (Citrobacter freundii strain E51 plasmid pE51_002, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

88. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034714 (Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

89. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010360 (Enterobacter roggenkampii strain 35734 plasmid p35734-141.404kb, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

90. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012168 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

91. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MN783743 (Escherichia coli plasmid pGA_VIM, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

92. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034084 (Klebsiella pneumoniae subsp. pneumoniae strain R210-2 plasmid pR210-2-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

93. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220284 (Aeromonas sp. pRIVM0001_VIM-1 plasmid pRIVM0001_VIM-1_171012_B12, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

94. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG228427 (Kluyvera cryocrescens strain BO64W plasmid pKC-BO-N1-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

95. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG550958 (Escherichia coli strain G3216 plasmid pG3216.2, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

96. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH325469 (Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

97. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH325468 (Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

98. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH594478 (Citrobacter freundii strain AA593 plasmid pIBAC_Incx3_A/C, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

99. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH594477 (Citrobacter freundii strain AA535 plasmid pIBAC_IncA/C, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

100. spacer 20.36|2817339|32|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG053108 (Citrobacter freundii strain 33587 plasmid pCf587, complete sequence) position: , mismatch: 7, identity: 0.781

gggattgttttcttttgggatcgagttctcga	CRISPR spacer
caatttgttttcgtttggcatcgagttctcca	Protospacer
 .. ******** ***** *********** *

101. spacer 20.52|2818483|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 7, identity: 0.806

aaaggaattttaacagggggatacatttgttactag	CRISPR spacer
gaaggaattttaacaggggggtacatttcctaacaa	Protospacer
.*******************.******* .** .*.

102. spacer 20.86|2820935|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MG592541 (Vibrio phage 1.174.O._10N.261.55.A8, partial genome) position: , mismatch: 7, identity: 0.794

attttttttagcgacccttcggctttgctcgggg-	CRISPR spacer
attttttgtagcgacctttcggc-taactcggtta	Protospacer
******* ********.****** * .*****   

103. spacer 30.1|4596204|30|NC_010296|CRISPRCasFinder matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 7, identity: 0.767

accctctccggcgatagtggcgatgatatc	CRISPR spacer
ggacgttccggcgagtgtggcgatgatatc	Protospacer
.  * .********  **************

104. spacer 30.1|4596204|30|NC_010296|CRISPRCasFinder matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 7, identity: 0.767

accctctccggcgatagtggcgatgatatc	CRISPR spacer
aatcttcatggcgatcgtggcgatgatatc	Protospacer
* .**.. .****** **************

105. spacer 17.1|2623144|38|NC_010296|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.789

ggtggggtagggttgattcatgaatcaaccctacagat	CRISPR spacer
tgagcggtagggttgactcatgaatcaaccctaaccct	Protospacer
 * * ***********.****************    *

106. spacer 20.6|2815173|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 8, identity: 0.771

--aacttaatcctctaaaaaatcatgagagtcataga	CRISPR spacer
ccaaat--atcctctaaaaaatcattagagccacact	Protospacer
  ** *  ***************** ****.**.*  

107. spacer 20.52|2818483|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT840189 (Bacteriophage sp. Joined_contig_348 genomic sequence) position: , mismatch: 8, identity: 0.778

aaaggaattttaacagggggatacatttgttactag	CRISPR spacer
aagggaattttaacaggggggtacatttaacaagat	Protospacer
**.*****************.*******. .*  * 

108. spacer 21.8|2823577|35|NC_010296|CRT,PILER-CR,CRISPRCasFinder matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 8, identity: 0.771

atggtttttactcctaagtatttgtttttactggc	CRISPR spacer
ataattattaatcctaagtatttgtttttacatat	Protospacer
**..** *** ********************  ..

109. spacer 22.15|2827278|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039899 (Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence) position: , mismatch: 8, identity: 0.771

cccaactataccgatgatttcggtactgaatacaa---	CRISPR spacer
cccaactatacctttgatttcggta---aattcgtgca	Protospacer
************  ***********   *** *.    

110. spacer 22.15|2827278|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039890 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence) position: , mismatch: 8, identity: 0.771

cccaactataccgatgatttcggtactgaatacaa---	CRISPR spacer
cccaactatacctttgatttcggta---aattcgtgca	Protospacer
************  ***********   *** *.    

111. spacer 17.1|2623144|38|NC_010296|CRISPRCasFinder matches to NZ_CP025929 (Microcystis aeruginosa NIES-2481 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.763

ggtggggtagggttgattcatgaatcaaccctacagat--	CRISPR spacer
--agcggtagggttgactcatgaatcaaccctaaccctgc	Protospacer
   * ***********.****************    *  

112. spacer 20.88|2821083|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MN856008 (Siphoviridae sp. isolate 424, complete genome) position: , mismatch: 9, identity: 0.735

atgagcccattagttgagggattcacaaaagttt	CRISPR spacer
actacaccattagttgacggattaacaaaaggca	Protospacer
*. *  *********** ***** ******* . 

113. spacer 20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_041887 (Rhodococcus phage Weasels2, complete genome) position: , mismatch: 9, identity: 0.727

cgaaattctgcaattccatcggcaataattaaa	CRISPR spacer
ctcaattctgcaattctttcggcaataaaacgc	Protospacer
*  *************. **********   . 

114. spacer 20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_014839 (Pantoea sp. At-9b plasmid pPAT9B02, complete sequence) position: , mismatch: 9, identity: 0.727

cgaaattctgcaattccatcggcaataattaaa	CRISPR spacer
gtaaatgctgcaattgcatcggcaattccttca	Protospacer
  **** ******** **********  .*  *

115. spacer 20.100|2821944|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_041887 (Rhodococcus phage Weasels2, complete genome) position: , mismatch: 9, identity: 0.743

cgaaattctgcaattccatcggcaataattaaaaa-----	CRISPR spacer
ctcaattctgcaattctttcggcaat-----aaaacgctg	Protospacer
*  *************. ********     ****     

116. spacer 22.9|2826845|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_013518 (Sebaldella termitidis ATCC 33386 plasmid pSTERM01, complete sequence) position: , mismatch: 9, identity: 0.743

aaattttgcatttgctgaaaaaatctttgaccttc	CRISPR spacer
agaagttacatttgatgaaaaaatctttgataata	Protospacer
*.*  **.****** ***************.  * 

117. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tatatggtataatgacagtacaaagaatttttag	Protospacer
  ************* ******** **     **

118. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

119. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

120. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

121. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

122. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

123. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017417 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

124. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

125. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

126. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

127. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044176 (Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

128. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 9, identity: 0.735

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tttaaagtatattgaaagttcaaacaaagatatc	Protospacer
 .** .***** ******* ********** *  

129. spacer 30.1|4596204|30|NC_010296|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.7

accctctccggcgatagtggcgatgatatc	CRISPR spacer
cccctctccggcgatagtgccgccctgcgc	Protospacer
 ****************** ** .     *

130. spacer 20.22|2816323|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MK994522 (Methanobacterium virus PhiF1, complete genome) position: , mismatch: 10, identity: 0.706

aaccctgattctaatgcaagagaattgacttcta	CRISPR spacer
atattatattctactgcaagaaaattgacttgtt	Protospacer
*  ..  ****** *******.********* * 

131. spacer 20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to KY883651 (Vibrio phage JSF20, complete genome) position: , mismatch: 10, identity: 0.706

tcggaaaataatcttgatgtgactcttgatgccc	CRISPR spacer
cttgatgatagtcttgatgtgagtcttgatgtga	Protospacer
.. ** .***.*********** ********.  

132. spacer 20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to KY883653 (Vibrio phage JSF34, complete genome) position: , mismatch: 10, identity: 0.706

tcggaaaataatcttgatgtgactcttgatgccc	CRISPR spacer
cttgatgatagtcttgatgtgagtcttgatgtga	Protospacer
.. ** .***.*********** ********.  

133. spacer 20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to KY883652 (Vibrio phage JSF24, complete genome) position: , mismatch: 10, identity: 0.706

tcggaaaataatcttgatgtgactcttgatgccc	CRISPR spacer
cttgatgatagtcttgatgtgagtcttgatgtga	Protospacer
.. ** .***.*********** ********.  

134. spacer 20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_013651 (Vibrio phage N4, complete genome) position: , mismatch: 10, identity: 0.706

tcggaaaataatcttgatgtgactcttgatgccc	CRISPR spacer
cttgatgatagtcttgatgtgagtcttgatgata	Protospacer
.. ** .***.*********** ******** . 

135. spacer 20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to FJ409640 (Vibriophage N4, complete genome) position: , mismatch: 10, identity: 0.706

tcggaaaataatcttgatgtgactcttgatgccc	CRISPR spacer
cttgatgatagtcttgatgtgagtcttgatgata	Protospacer
.. ** .***.*********** ******** . 

136. spacer 20.63|2819275|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MN692957 (Marine virus AFVG_117M60, complete genome) position: , mismatch: 10, identity: 0.714

gttaaagatttaataggcattgtttttactcctaa----	CRISPR spacer
agcaaagatttaatagtcattgtttcta----tgaaatc	Protospacer
. .************* ********.**    *.*    

137. spacer 20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to KR233165 (Escherichia phage PEC04, complete genome) position: , mismatch: 10, identity: 0.697

cgaaattctgcaattccatcggcaataattaaa	CRISPR spacer
agttcatctgcagttccttcggcaataattttt	Protospacer
 *    ******.**** ************   

138. spacer 20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MT176424 (Citrobacter phage PhiZZ6, complete genome) position: , mismatch: 10, identity: 0.697

cgaaattctgcaattccatcggcaataattaaa	CRISPR spacer
agttcatctgcagttccttcggcaataattttt	Protospacer
 *    ******.**** ************   

139. spacer 20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MG867727 (Escherichia phage vB_EcoM-G28, complete genome) position: , mismatch: 10, identity: 0.697

cgaaattctgcaattccatcggcaataattaaa	CRISPR spacer
agttcatctgcagttccttcggcaataattttt	Protospacer
 *    ******.**** ************   

140. spacer 20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to KF925357 (Escherichia phage HY01, complete genome) position: , mismatch: 10, identity: 0.697

cgaaattctgcaattccatcggcaataattaaa	CRISPR spacer
agttcatctgcagttccttcggcaataattttt	Protospacer
 *    ******.**** ************   

141. spacer 20.99|2821874|33|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NC_031085 (Shigella phage SHBML-50-1, complete genome) position: , mismatch: 10, identity: 0.697

cgaaattctgcaattccatcggcaataattaaa	CRISPR spacer
agttcatctgcagttccttcggcaataattttt	Protospacer
 *    ******.**** ************   

142. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to NZ_CP026605 (Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
cctgtaggttgggttgaagaatgaagcccaacaaatc	Protospacer
  .**************** *****.******.  . 

143. spacer 23.1|2869775|37|NC_010296|CRISPRCasFinder matches to KF356199 (Microcystis phage MaMV-DC, complete genome) position: , mismatch: 10, identity: 0.73

--------aacgtaggttgggttgaagcatgaaacccaacgcccg	CRISPR spacer
ctcagccaaac--------ggttgaagcatgaaatccaacgctcg	Protospacer
        ***        ***************.*******.**

144. spacer 20.40|2817623|35|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035695 (Vibrio furnissii strain 2419-04 plasmid unnamed1) position: , mismatch: 11, identity: 0.686

aatctttcgcgaaacagcatcgctaacttaaatgg	CRISPR spacer
ccgctttcgtgaaaccgcatcgctaactggatctc	Protospacer
   ******.***** ************ .* .  

145. spacer 20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to KY883648 (Vibrio phage JSF35, complete genome) position: , mismatch: 11, identity: 0.676

tcggaaaataatcttgatgtgactcttgatgccc	CRISPR spacer
cttaatgatagtcttgatgtgagtcttgatgata	Protospacer
.. .* .***.*********** ******** . 

146. spacer 20.62|2819204|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to KY883648 (Vibrio phage JSF35, complete genome) position: , mismatch: 11, identity: 0.676

tcggaaaataatcttgatgtgactcttgatgccc	CRISPR spacer
cttaatgatagtcttgatgtgagtcttgatgata	Protospacer
.. .* .***.*********** ******** . 

147. spacer 20.64|2819347|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 11, identity: 0.676

ccatcgtaaattctgactgcatagctatctaatt	CRISPR spacer
tagccgtaaattctgactgaatagccataagaga	Protospacer
. ..*************** *****.**  .*  

148. spacer 20.64|2819347|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 11, identity: 0.676

ccatcgtaaattctgactgcatagctatctaatt	CRISPR spacer
tagccgtaaattctgactgaatagccataagaga	Protospacer
. ..*************** *****.**  .*  

149. spacer 22.7|2826703|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to MN694330 (Marine virus AFVG_250M1134, complete genome) position: , mismatch: 11, identity: 0.676

ctgacagaacgggttgaatgggaaggtaagccta	CRISPR spacer
tgattggtacgttttgaatgggaaggtaagccat	Protospacer
. . ..* ***  *******************  

150. spacer 22.17|2827424|34|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 11, identity: 0.676

actatggtataatgaaagtacaaacaaagaaaag	CRISPR spacer
tgaaataaataaagaaagtacaaaaaaagaaatt	Protospacer
   *  . **** *********** *******  

151. spacer 22.21|2827711|36|NC_010296|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018258 (Calothrix sp. NIES-4071 plasmid plasmid3 DNA, complete genome) position: , mismatch: 11, identity: 0.694

cagaggcttgagctaattcaaatttttcacgcgcta	CRISPR spacer
cgtagtcttgagctaattcaaattcttcatttaagc	Protospacer
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