CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_013366	Escherichia coli O111:H- str. 11128 plasmid pO111_3, complete sequence	0 crisprs	NA	0	0	1
NC_013364	Escherichia coli O111:H- str. 11128, complete genome	2 crisprs	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	0	4	18
NC_013368	Escherichia coli O111:H- str. 11128 plasmid pO111_5, complete sequence	0 crisprs	NA	0	0	0
NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	1 crisprs	NA	1	0	1
NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	1 crisprs	csa3	0	2	1
NC_013367	Escherichia coli O111:H- str. 11128 plasmid pO111_4, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013364_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013364_1

3445983-3446255

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

4 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_013364_1

>merge|NC_013364|1|3445983-3446255|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACAAAACCAAACTTCTCCATAAATTCCATAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGAGTGCTGACAGGTGTCTCGATTACCTGATCGGTTTATCCCCGCTGGCGCGGGGAACACGAACGCAATATCACGGCGTTCTGCGGCCTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTCGGGCCGGGTAAGTGAACCTGTCGGTTTTCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_013364|1|1|3445983-3446255|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_013364|1|1|3445983-3446255|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_013364|1|1|3445983-3446255|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AAAACCAAACTTCTCCATAAATTCCATAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAGTGCTGACAGGTGTCTCGATTACCTGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAACGCAATATCACGGCGTTCTGCGGCCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGGCCGGGTAAGTGAACCTGTCGGTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013364.1\|WP_001090398.1\|3442274_3443702_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_013364.1\|WP_000568972.1\|3438537_3439587_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_013364.1\|WP_000517476.1\|3440791_3441103_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_013364.1\|WP_000206431.1\|3448950_3450006_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NC_013364.1\|WP_000144863.1\|3446644_3447565_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_013364.1\|WP_001084109.1\|3450553_3452116_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_013364.1\|WP_001295182.1\|3437795_3438557_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_013364.1\|WP_000956458.1\|3455106_3455259_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NC_013364.1\|WP_001173673.1\|3441669_3442275_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_013364.1\|WP_001219242.1\|3439583_3440063_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_013364.1\|WP_001246104.1\|3441296_3441620_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_013364.1\|WP_000372108.1\|3443703_3444612_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_013364.1\|WP_000039843.1\|3455523_3456258_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_013364.1\|WP_000246138.1\|3440062_3440773_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_013364.1\|WP_000490429.1\|3444863_3445901_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_013364.1\|WP_000085038.1\|3448193_3448940_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_013364.1\|WP_000063176.1\|3446351_3446645_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_013364.1\|WP_000281442.1\|3447561_3448212_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_013364.1\|WP_000029342.1\|3450017_3450557_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_013364.1\|WP_001233921.1\|3452213_3454913_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
NC_013364.1\|WP_001090398.1\|3442274_3443702_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_013364.1\|WP_000568972.1\|3438537_3439587_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_013364.1\|WP_000517476.1\|3440791_3441103_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NC_013364.1\|WP_000206431.1\|3448950_3450006_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.10696e-155
NC_013364.1\|WP_000144863.1\|3446644_3447565_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.23259e-157
NC_013364.1\|WP_001084109.1\|3450553_3452116_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_013364.1\|WP_001295182.1\|3437795_3438557_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NC_013364.1\|WP_000956458.1\|3455106_3455259_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NC_013364.1\|WP_001173673.1\|3441669_3442275_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NC_013364.1\|WP_001219242.1\|3439583_3440063_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NC_013364.1\|WP_001246104.1\|3441296_3441620_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NC_013364.1\|WP_000372108.1\|3443703_3444612_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_013364.1\|WP_000039843.1\|3455523_3456258_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NC_013364.1\|WP_000246138.1\|3440062_3440773_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NC_013364.1\|WP_000490429.1\|3444863_3445901_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_013364.1\|WP_000085038.1\|3448193_3448940_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.02728e-49
NC_013364.1\|WP_000063176.1\|3446351_3446645_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NC_013364.1\|WP_000281442.1\|3447561_3448212_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.04911e-92
NC_013364.1\|WP_000029342.1\|3450017_3450557_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.30002e-26
NC_013364.1\|WP_001233921.1\|3452213_3454913_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.73288e-179

>NC_013364.1|WP_000490429.1|3444863_3445901_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NC_013364.1|WP_000372108.1|3443703_3444612_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NC_013364.1|WP_001090398.1|3442274_3443702_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTSGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NC_013364.1|WP_001173673.1|3441669_3442275_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NC_013364.1|WP_001246104.1|3441296_3441620_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NC_013364.1|WP_000517476.1|3440791_3441103_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NC_013364.1|WP_000246138.1|3440062_3440773_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NC_013364.1|WP_001219242.1|3439583_3440063_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NC_013364.1|WP_000568972.1|3438537_3439587_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEYILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLNDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NC_013364.1|WP_001295182.1|3437795_3438557_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NC_013364.1|WP_000063176.1|3446351_3446645_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NC_013364.1|WP_000144863.1|3446644_3447565_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPQPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NC_013364.1|WP_000281442.1|3447561_3448212_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFVQRLSQGYGKSRAFGCGLMLIKPGAEA
>NC_013364.1|WP_000085038.1|3448193_3448940_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGGDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGAWLSKEEPCTSQE
>NC_013364.1|WP_000206431.1|3448950_3450006_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NC_013364.1|WP_000029342.1|3450017_3450557_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWREELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NC_013364.1|WP_001084109.1|3450553_3452116_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGTAWQFLLGLLQTSFAPKNHGRWDDIWQDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NC_013364.1|WP_001233921.1|3452213_3454913_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKNRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIESPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NC_013364.1|WP_000956458.1|3455106_3455259_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NC_013364.1|WP_000039843.1|3455523_3456258_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NC_013364_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013364_2

3471957-3472351

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACA	PILER-CR

6 spacers

The CRISPR arrays of NC_013364_2

>merge|NC_013364|2|3471957-3472351|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAGCTCTACGTGAAGAATATTTGCAACACCCGCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACTCCAACCTTCCATGAGATACGCGCATTAGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACCGTGACCGCCTGTACACGCTGTAATGGCTCACCGGTTTATCCCCGCTGGCGCGGGGAACACACACTATCCGGGCGGTATTACGCCCAAATATCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCCGGGTGAAACCACTCGCGGCAGATCTTGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_013364|2|2|3471957-3472351|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAGCTC	TACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCAACCTTCCATGAGATACGCGCATTAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTGACCGCCTGTACACGCTGTAATGGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_013364|2|2|3471957-3472349|CRT
TGGTTTATCCCCGCTGGCGCGGGGAAC	TCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAGC	TCTACGTGAAGAATATTTGCAACACCCGCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACTCCAACCTTCCATGAGATACGCGCATTAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACCGTGACCGCCTGTACACGCTGTAATGGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACACACTATCCGGGCGGTATTACGCCCAAATATC
CGGTTTATCCCCGCTGGCGCGGGGAAC	ACCTGCCGGGTGAAACCACTCGCGGCAGATCTTG
CGGTTTATCCCCGCTGGCGCGGGGAAC

>NC_013364|2|2|3472018-3472350|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAGCT	CTACGTGAAGAATATTTGCAACACCCGCAAGAACGG
TTTATCCCCGCTGGCGCGGGGAACACTC	CAACCTTCCATGAGATACGCGCATTAGCGGCGG
TTTATCCCCGCTGGCGCGGGGAACACCG	TGACCGCCTGTACACGCTGTAATGGCTCACCGG
TTTATCCCCGCTGGCGCGGGGAACACAC	ACTATCCGGGCGGTATTACGCCCAAATATCCGG
TTTATCCCCGCTGGCGCGGGGAACACCT	GCCGGGTGAAACCACTCGCGGCAGATCTTGCGG
TTTATCCCCGCTGGCGCGGGGAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013364.1\|WP_000059312.1\|3465908_3467363_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_013364.1\|WP_000581937.1\|3479034_3479283_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NC_013364.1\|WP_000109367.1\|3461863_3462124_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NC_013364.1\|WP_000036723.1\|3474586_3475885_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_013364.1\|WP_000210878.1\|3475972_3477610_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_013364.1\|WP_001164569.1\|3468536_3469814_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NC_013364.1\|WP_001341834.1\|3462863_3463724_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NC_013364.1\|WP_001341835.1\|3463720_3464500_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NC_013364.1\|WP_000186445.1\|3482999_3485756_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NC_013364.1\|WP_001071648.1\|3477837_3478629_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_013364.1\|WP_001199970.1\|3472690_3473362_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_013364.1\|WP_001288224.1\|3473500_3473641_+\|hypothetical-protein	unknown	unknown	unknown
NC_013364.1\|WP_000254745.1\|3478699_3479035_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NC_013364.1\|WP_000039753.1\|3469839_3471318_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NC_013364.1\|WP_000226815.1\|3479360_3481595_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_013364.1\|WP_001130266.1\|3462140_3462716_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NC_013364.1\|WP_000147666.1\|3464477_3465887_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NC_013364.1\|WP_001268451.1\|3473654_3474527_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NC_013364.1\|WP_001299098.1\|3460601_3461873_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NC_013364.1\|WP_000021329.1\|3467432_3468218_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605

Protein	Function_ID	Function_description	E-value
NC_013364.1\|WP_000059312.1\|3465908_3467363_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NC_013364.1\|WP_000581937.1\|3479034_3479283_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NC_013364.1\|WP_000109367.1\|3461863_3462124_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
NC_013364.1\|WP_000036723.1\|3474586_3475885_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_013364.1\|WP_000210878.1\|3475972_3477610_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_013364.1\|WP_001164569.1\|3468536_3469814_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.54023e-29
NC_013364.1\|WP_001341834.1\|3462863_3463724_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.55254e-89
NC_013364.1\|WP_001341835.1\|3463720_3464500_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	3.2021e-62
NC_013364.1\|WP_000186445.1\|3482999_3485756_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NC_013364.1\|WP_001071648.1\|3477837_3478629_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NC_013364.1\|WP_001199970.1\|3472690_3473362_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.73859e-155
NC_013364.1\|WP_000226815.1\|3479360_3481595_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_013364.1\|WP_000254745.1\|3478699_3479035_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NC_013364.1\|WP_000039753.1\|3469839_3471318_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.84635e-108
NC_013364.1\|WP_001130266.1\|3462140_3462716_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NC_013364.1\|WP_000147666.1\|3464477_3465887_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NC_013364.1\|WP_001268451.1\|3473654_3474527_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.01855e-100
NC_013364.1\|WP_001299098.1\|3460601_3461873_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.77152e-127
NC_013364.1\|WP_000021329.1\|3467432_3468218_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.61186e-139

>NC_013364.1|WP_000039753.1|3469839_3471318_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPYADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NC_013364.1|WP_001164569.1|3468536_3469814_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEVRTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NC_013364.1|WP_000021329.1|3467432_3468218_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDSMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NC_013364.1|WP_000059312.1|3465908_3467363_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NC_013364.1|WP_000147666.1|3464477_3465887_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NC_013364.1|WP_001341835.1|3463720_3464500_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRIEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NC_013364.1|WP_001341834.1|3462863_3463724_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAVKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NC_013364.1|WP_001130266.1|3462140_3462716_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NC_013364.1|WP_000109367.1|3461863_3462124_+|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NC_013364.1|WP_001299098.1|3460601_3461873_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEEEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLEPSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NC_013364.1|WP_001199970.1|3472690_3473362_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_013364.1|WP_001288224.1|3473500_3473641_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDDESKITDAAVNLFIQI
>NC_013364.1|WP_001268451.1|3473654_3474527_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKFAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVYISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGKSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NC_013364.1|WP_000036723.1|3474586_3475885_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_013364.1|WP_000210878.1|3475972_3477610_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NC_013364.1|WP_001071648.1|3477837_3478629_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NC_013364.1|WP_000254745.1|3478699_3479035_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NC_013364.1|WP_000581937.1|3479034_3479283_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NC_013364.1|WP_000226815.1|3479360_3481595_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NC_013364.1|WP_000186445.1|3482999_3485756_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVMNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013364_1	1.1\|3446012\|32\|NC_013364\|PILER-CR,CRISPRCasFinder,CRT	3446012-3446043	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
NC_013364_2	2.1\|3471986\|32\|NC_013364\|CRISPRCasFinder	3471986-3472017	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
NC_013364_1	1.2\|3446073\|32\|NC_013364\|PILER-CR,CRISPRCasFinder,CRT	3446073-3446104	32	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	32377-32408	9	0.719
NC_013364_1	1.3\|3446134\|32\|NC_013364\|PILER-CR,CRISPRCasFinder,CRT	3446134-3446165	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	292180-292211	9	0.719
NC_013364_1	1.3\|3446134\|32\|NC_013364\|PILER-CR,CRISPRCasFinder,CRT	3446134-3446165	32	NZ_CP020740	[Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence	20747-20778	9	0.719

1. spacer 1.1|3446012|32|NC_013364|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

2. spacer 2.1|3471986|32|NC_013364|CRISPRCasFinder matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

-gacagaacggcctcagtagtctcgtcaggctc	CRISPR spacer
ccaccg-ctggccccagtagcctcgtcaggctt	Protospacer
  ** *  .****.******.***********.

3. spacer 1.2|3446073|32|NC_013364|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

gagagtgctgacaggtgtctcgattacctgat	CRISPR spacer
ggctttgctggcaggtctctcgattaccttgg	Protospacer
*.   *****.***** ************ .

4. spacer 1.3|3446134|32|NC_013364|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 9, identity: 0.719

gaacgcaatatcacggcgttctgcggcctcgg	CRISPR spacer
atcggcaatatcacggcgtttttcggcgccgc	Protospacer
.   ****************.* **** .**

5. spacer 1.3|3446134|32|NC_013364|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020740 ([Pseudomonas] mesoacidophila strain ATCC 31433 plasmid pATCC31433, complete sequence) position: , mismatch: 9, identity: 0.719

gaacgcaatatcacggcgttctgcggcctcgg	CRISPR spacer
accggcaacatcacggcgttcttcggcgccgc	Protospacer
.   ****.************* **** .**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

327707 : 338389

Streptococcus_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001285288.1\|327707_328811_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893251.1\|328822_330076_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
WP_162829202.1\|331296_332510_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000692308.1\|333402_333624_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.1e-10	45.8
WP_001186787.1\|333692_334169_-	RadC family protein	NA	NA	NA	NA
WP_000214420.1\|334184_334670_-	antirestriction protein	A9J566	Pseudomonas_phage	2.0e-12	31.0
WP_001234405.1\|334761_335580_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	4.7e-46	39.0
WP_000480477.1\|335669_336608_-	hypothetical protein	NA	NA	NA	NA
WP_000642924.1\|336673_337084_-	hypothetical protein	G5DES5	Salmonella_phage	2.1e-26	41.9
WP_162829202.1\|337175_338389_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0

DBSCAN-SWA_2

551083 : 630975

Escherichia_phage(33.33%)

tRNA,protease,tail,head,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000186631.1\|551083_551563_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_000365177.1\|551766_552561_-	TraB/GumN family protein	NA	NA	NA	NA
WP_001342071.1\|552698_553040_+	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	2.1e-40	74.5
WP_000078269.1\|553153_555658_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	3.8e-115	38.4
WP_000883048.1\|555919_556852_+	glutaminase A	NA	NA	NA	NA
WP_000982172.1\|556854_558147_+	amino acid permease	NA	NA	NA	NA
WP_001026747.1\|558271_558679_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000970323.1\|558679_559138_-	NfeD family protein	NA	NA	NA	NA
WP_000904502.1\|559134_560052_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_001157532.1\|560197_560875_+	iron ABC transporter ATP-binding protein FetA	G3M9Y6	Bacillus_virus	3.1e-27	33.8
WP_001345010.1\|560861_561644_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_001295322.1\|561706_562561_-	chaperedoxin	NA	NA	NA	NA
WP_000148941.1\|562621_563431_-	NADP(+)-dependent aldehyde reductase	NA	NA	NA	NA
WP_001295836.1\|563420_564044_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_001110573.1\|564014_564701_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-33	35.6
WP_000561841.1\|564697_567112_+	ABC transporter permease	NA	NA	NA	NA
WP_001320180.1\|571733_571994_+	hypothetical protein	NA	NA	NA	NA
WP_001297301.1\|572050_572224_+	hypothetical protein	NA	NA	NA	NA
WP_001158001.1\|573225_574320_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_000460145.1\|574388_575315_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
WP_000776388.1\|575544_576027_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_000141275.1\|576104_576920_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA
WP_001342079.1\|577009_578791_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	7.8e-38	27.0
WP_000943558.1\|578803_579580_+	hydroxypyruvate isomerase	NA	NA	NA	NA
WP_000765839.1\|579679_580558_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
WP_000401100.1\|580726_582181_+	putative allantoin permease	NA	NA	NA	NA
WP_000006887.1\|582240_583602_+	allantoinase AllB	NA	NA	NA	NA
WP_001298987.1\|583658_584960_+	uracil/xanthine transporter	NA	NA	NA	NA
WP_001315307.1\|584981_586127_+	glycerate 3-kinase	W6LM47	Streptococcus_phage	1.1e-48	41.9
WP_000540946.1\|586255_587041_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA
WP_001301144.1\|587051_588287_-	allantoate deiminase	NA	NA	NA	NA
WP_000703909.1\|588308_589358_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_000580836.1\|589674_591342_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_000495365.1\|591351_592611_+	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_000152513.1\|592621_593437_+	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000855355.1\|593433_594327_+	carbamate kinase	NA	NA	NA	NA
WP_000815554.1\|594463_595531_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_001295318.1\|595527_596037_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_000212252.1\|596154_596877_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_000256002.1\|596879_597374_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_000912342.1\|597547_598933_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.0e-45	34.8
WP_001143540.1\|598968_599490_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|599597_599810_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|599811_600678_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|601158_601701_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988363.1\|601920_602613_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001345007.1\|602643_605253_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_001255226.1\|606304_606820_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|606822_607455_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_001277425.1\|608083_608656_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	6.3e-90	97.4
WP_001345004.1\|608665_608998_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_000063245.1\|609053_610079_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.1e-188	97.4
WP_000158868.1\|610120_610516_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000752958.1\|610527_610827_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	8.4e-46	98.9
WP_085947772.1\|610847_612060_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-100	57.1
WP_000985133.1\|612153_612732_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.0e-79	98.4
WP_000683103.1\|612728_613124_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.4e-69	98.5
WP_012817849.1\|613131_613872_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.3e-129	97.6
WP_000479169.1\|613887_614310_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.1e-70	96.4
WP_000459457.1\|614291_614726_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840226.1\|614718_616899_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	90.7
WP_162829202.1\|616904_618117_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000239881.1\|618187_618856_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226384.1\|619401_620886_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201824.1\|621072_622026_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177454.1\|622538_623300_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
WP_001224569.1\|623482_624373_-	DUF4434 family protein	NA	NA	NA	NA
WP_001345000.1\|624373_627346_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_000383942.1\|627332_629570_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420935.1\|629838_630975_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

850510 : 884580

Enterobacteria_phage(56.76%)

holin,tail,integrase,head,capsid,transposase

attL 845103:845119|attR 876894:876910

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
845103:845119	attL	NA	NA	NA	NA
WP_000263438.1\|850510_851587_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	1.8e-199	99.4
WP_162829202.1\|851994_853208_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000075117.1\|853213_853411_-	hypothetical protein	A0A0N7KZA0	Stx2-converting_phage	1.2e-19	100.0
WP_085948261.1\|853410_853626_-\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	1.7e-32	97.2
WP_000023272.1\|854064_855915_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.9
WP_000499454.1\|856213_856372_-	DUF3927 family protein	NA	NA	NA	NA
WP_001302581.1\|856457_857201_-	hypothetical protein	NA	NA	NA	NA
WP_001097238.1\|857385_858075_-	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_032178163.1\|858089_858212_-	YlcG family protein	NA	NA	NA	NA
WP_000750155.1\|858551_859511_+	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_000994516.1\|859722_859911_-	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_001008192.1\|859907_860270_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	3.5e-62	98.3
WP_000002251.1\|860266_860557_-	DUF1364 domain-containing protein	K7PK25	Enterobacteria_phage	7.1e-50	97.9
WP_001286917.1\|860549_860762_-	hypothetical protein	K7PK10	Enterobacteria_phage	1.6e-35	100.0
WP_000950962.1\|860754_860931_-	protein ninF	A0A220NRM2	Escherichia_phage	1.9e-26	100.0
WP_000386661.1\|860930_861290_-	DUF2591 family protein	G8EYI2	Enterobacteria_phage	2.7e-62	95.0
WP_001254255.1\|861292_861469_-	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_000814614.1\|861465_861876_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	2.1e-71	98.5
WP_000344554.1\|861847_862210_-	hypothetical protein	A0A2I6PIG0	Escherichia_phage	4.4e-33	67.9
WP_000818841.1\|862227_862434_-	hypothetical protein	G8C7M4	Escherichia_phage	7.9e-27	98.5
WP_000145948.1\|862506_862797_-	hypothetical protein	K7PH23	Enterobacteria_phage	2.5e-50	100.0
WP_001254039.1\|864723_866229_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.6e-100	54.0
WP_000256792.1\|866265_866613_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_000522630.1\|866670_867699_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-114	61.3
WP_000201528.1\|867750_868125_+	hypothetical protein	NA	NA	NA	NA
WP_001204544.1\|868117_868471_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.5e-41	69.2
WP_000975037.1\|868485_869061_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.5e-51	58.7
WP_000683071.1\|869057_869453_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	4.2e-61	87.0
WP_001143011.1\|869460_870213_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.9e-132	97.2
WP_000479083.1\|870226_870658_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_000533403.1\|870684_871098_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000082363.1\|871078_873658_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	80.3
WP_000847298.1\|873654_873984_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000194798.1\|874691_875435_+\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	3.7e-151	100.0
WP_072147834.1\|875380_876010_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.5e-110	99.5
WP_000514984.1\|876250_879727_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.5
876894:876910	attR	NA	NA	NA	NA
WP_001230465.1\|879794_880394_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	1.8e-108	98.0
WP_000268900.1\|880458_881772_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZD68	Stx2-converting_phage	9.7e-78	98.9
WP_001023459.1\|881773_882043_+\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	4.6e-43	96.6
WP_000950982.1\|882148_883030_+	hypothetical protein	A5LH48	Enterobacteria_phage	3.9e-147	90.4
WP_044722167.1\|883299_884085_+	type III secretion system effector Cif	A5LH49	Enterobacteria_phage	6.5e-146	98.1
WP_021351651.1\|884208_884580_-	hypothetical protein	K7PH54	Enterobacteria_phage	1.1e-58	95.1

DBSCAN-SWA_4

1105695 : 1148254

Escherichia_phage(37.04%)

transposase,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156529.1\|1105695_1107456_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877161.1\|1107641_1108094_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750416.1\|1108169_1109210_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1109566_1110076_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001444487.1\|1110348_1110924_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875023.1\|1110886_1113049_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1113058_1113505_-	YccF domain-containing protein	NA	NA	NA	NA
WP_001297106.1\|1113627_1115682_+	DNA helicase IV	A7KV33	Bacillus_phage	7.7e-21	27.9
WP_000424181.1\|1115713_1116172_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1116267_1116930_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|1117102_1117516_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1117560_1117878_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116302.1\|1117935_1119126_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048244.1\|1119220_1119499_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|1119495_1119825_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375138.1\|1119915_1120575_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	54.9
WP_000273151.1\|1121975_1122218_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000878794.1\|1122285_1123326_-	exonuclease	K7PLW7	Enterobacteria_phage	2.1e-59	61.2
WP_162829202.1\|1123380_1124594_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000048507.1\|1124645_1126070_-	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|1126162_1126354_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|1126350_1126539_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000394557.1\|1127070_1127445_-	hypothetical protein	NA	NA	NA	NA
WP_000379580.1\|1127456_1127609_-	DUF1391 family protein	M4QQ57	Salicola_phage	3.9e-07	53.2
WP_000103686.1\|1127881_1128598_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	3.8e-52	42.0
WP_000471549.1\|1128647_1128863_+	transcriptional regulator	NA	NA	NA	NA
WP_000693949.1\|1128859_1129285_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262389.1\|1129356_1130427_+	hypothetical protein	A0A088CD36	Shigella_phage	3.2e-63	65.2
WP_001151153.1\|1130467_1130890_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.1e-64	92.1
WP_001266135.1\|1130886_1131183_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	7.5e-47	93.7
WP_001209481.1\|1131179_1131641_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	3.4e-38	92.9
WP_000403777.1\|1131618_1131975_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	3.0e-58	98.3
WP_000935420.1\|1132025_1132238_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	5.8e-33	94.3
WP_000224233.1\|1132489_1132753_+	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
WP_000207986.1\|1132763_1133633_+	DUF551 domain-containing protein	A0A1U9AJ59	Stx1_converting_phage	5.2e-120	76.8
WP_001278454.1\|1133748_1133853_+	hypothetical protein	NA	NA	NA	NA
WP_000902696.1\|1134041_1134254_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-25	91.4
WP_032280206.1\|1134421_1134682_+	hypothetical protein	NA	NA	NA	NA
WP_001265133.1\|1134701_1135751_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	3.4e-110	54.9
WP_001217436.1\|1135763_1136135_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
WP_000090265.1\|1136124_1136496_+	antitermination protein	Q777W5	Enterobacteria_phage	1.0e-53	84.0
WP_000265267.1\|1136647_1137466_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000917737.1\|1137752_1137950_+	hypothetical protein	S5MQK8	Escherichia_phage	2.6e-27	96.9
WP_000261909.1\|1138087_1138801_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000874357.1\|1139568_1141419_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.9
WP_024182511.1\|1141857_1142073_+\|holin	class II holin family protein	Q6H9V8	Enterobacteria_phage	1.7e-32	97.2
WP_000138558.1\|1142328_1142601_-	hypothetical protein	NA	NA	NA	NA
WP_001003118.1\|1142760_1143294_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
WP_000675929.1\|1143514_1143628_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	5.6e-11	97.3
WP_012816791.1\|1143849_1144035_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001303878.1\|1144561_1144876_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001303940.1\|1144957_1145182_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.7e-19	90.6
WP_162829202.1\|1145231_1146445_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_012817858.1\|1146531_1147425_-	Tir-cytoskeleton coupling protein TccP2	NA	NA	NA	NA
WP_001443410.1\|1147870_1148254_-	hypothetical protein	Q6H9S1	Enterobacteria_phage	4.4e-55	84.3

DBSCAN-SWA_5

1183583 : 1278699

106

Escherichia_phage(45.88%)

terminase,holin,tail,integrase,portal,bacteriocin,capsid,transposase,lysis

attL 1184852:1184868|attR 1283683:1283699

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000013654.1\|1183583_1184894_-	DUF3596 domain-containing protein	A0A1I9LJL6	Stx_converting_phage	3.2e-254	100.0
1184852:1184868	attL	NA	NA	NA	NA
WP_001208773.1\|1184946_1185231_-	excisionase family protein	G9L654	Escherichia_phage	9.1e-50	100.0
WP_001303965.1\|1185316_1185616_-	hypothetical protein	G9L655	Escherichia_phage	2.4e-53	100.0
WP_000022062.1\|1185703_1185985_-	hypothetical protein	NA	NA	NA	NA
WP_000951710.1\|1187091_1187301_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.8e-34	94.2
WP_000797282.1\|1187302_1187491_-	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	1.2e-29	95.2
WP_001261535.1\|1187487_1187664_-	hypothetical protein	A0A0F6TJP6	Escherichia_coli_O157_typing_phage	4.5e-23	96.6
WP_001033097.1\|1187663_1188218_-	ead/Ea22-like family protein	Q76H45	Enterobacteria_phage	1.0e-57	87.7
WP_000109677.1\|1188219_1188519_-	hypothetical protein	A5VWB2	Enterobacteria_phage	1.1e-56	97.0
WP_001214466.1\|1188515_1188683_-	DUF2737 family protein	Q716F2	Shigella_phage	4.7e-22	96.4
WP_001111307.1\|1188693_1188987_-	DUF2856 family protein	K7P7E6	Enterobacteria_phage	3.2e-50	97.9
WP_000951320.1\|1189010_1189394_-	hypothetical protein	K7P6P8	Enterobacteria_phage	1.9e-66	98.4
WP_000031374.1\|1189393_1189999_-	ERF family protein	K7P6W7	Enterobacteria_phage	2.1e-107	99.5
WP_000050554.1\|1190009_1190180_-	hypothetical protein	K7PJW0	Enterobacteria_phage	3.0e-24	100.0
WP_001183771.1\|1190255_1190426_-	hypothetical protein	A0A192Y6R1	Salmonella_phage	1.3e-24	100.0
WP_000167579.1\|1190620_1191091_-	hypothetical protein	G9L670	Escherichia_phage	8.2e-88	99.4
WP_000198444.1\|1191149_1191533_-	hypothetical protein	G9L671	Escherichia_phage	3.9e-64	100.0
WP_000745483.1\|1192021_1192186_-	hypothetical protein	G9L672	Escherichia_phage	5.1e-21	100.0
WP_000957426.1\|1192188_1193235_-	serine/threonine protein kinase	G9L673	Escherichia_phage	5.2e-207	100.0
WP_001221211.1\|1193228_1193690_-	hypothetical protein	G9L674	Escherichia_phage	1.3e-77	100.0
WP_000885203.1\|1193757_1194099_-	DUF3024 domain-containing protein	A0A1I9LJN9	Stx_converting_phage	3.9e-63	100.0
WP_000250473.1\|1194159_1194867_-	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	1.5e-133	100.0
WP_001180318.1\|1194945_1195173_+	helix-turn-helix domain-containing protein	G9L677	Escherichia_phage	7.8e-36	100.0
WP_000438541.1\|1195311_1195608_+	hypothetical protein	C1JJ56	Enterobacteria_phage	8.9e-48	100.0
WP_000185454.1\|1195640_1196579_+	replication protein	A0A1I9LJP3	Stx_converting_phage	1.3e-172	100.0
WP_000788928.1\|1196575_1197277_+	Replication protein P	C1JJ58	Enterobacteria_phage	3.4e-130	100.0
WP_000145931.1\|1197273_1197564_+	protein ren	A0A1I9LJP5	Stx_converting_phage	9.6e-47	100.0
WP_001000127.1\|1197634_1197913_+	hypothetical protein	Q9ZWY1	Enterobacteria_phage	3.4e-49	100.0
WP_000103679.1\|1198045_1198261_+	hypothetical protein	A0A1I9LJP7	Stx_converting_phage	1.3e-32	100.0
WP_001281772.1\|1198271_1198508_+	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
WP_000814576.1\|1198464_1198911_+	recombination protein NinB	A0A0N7C2V1	Escherichia_phage	2.4e-81	100.0
WP_000153280.1\|1198907_1199435_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_000335902.1\|1199616_1200666_+	hypothetical protein	Q9T208	Enterobacteria_phage	1.3e-181	100.0
WP_001004020.1\|1200817_1201540_+	phage antirepressor KilAC domain-containing protein	A0A1I9LJQ1	Stx_converting_phage	7.8e-130	100.0
WP_001107963.1\|1201539_1202145_+	recombination protein NinG	A0A0P0ZCS9	Stx2-converting_phage	1.7e-98	100.0
WP_000144764.1\|1202141_1202336_+	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_001204880.1\|1202328_1202763_+	antitermination protein	G9L695	Escherichia_phage	2.8e-82	100.0
WP_000874503.1\|1203984_1205922_+	SASA family carbohydrate esterase	A0A1I9LJQ8	Stx_converting_phage	0.0e+00	99.7
WP_000143458.1\|1206056_1206236_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290212.1\|1206276_1206549_+	DUF826 domain-containing protein	A0A1I9LJR2	Stx_converting_phage	1.2e-22	100.0
WP_000284506.1\|1206625_1206841_+\|holin	class II holin family protein	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_000087461.1\|1206845_1207379_+	lysozyme	V5USG4	Shigella_phage	7.9e-103	100.0
WP_001056885.1\|1207653_1208223_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	1.8e-105	100.0
WP_000455406.1\|1208222_1208372_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_001082654.1\|1208379_1208844_+\|lysis	lysis protein	A0A2R2Z341	Escherichia_phage	5.8e-78	100.0
WP_000738505.1\|1208875_1209169_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	6.8e-48	100.0
WP_001301714.1\|1209318_1209522_+	hypothetical protein	A0A2R2Z338	Escherichia_phage	7.7e-35	100.0
WP_001086073.1\|1209577_1210384_+\|terminase	terminase	A0A0P0ZG40	Escherichia_phage	1.3e-133	100.0
WP_000143984.1\|1210364_1212071_+	hypothetical protein	G9L6K0	Escherichia_phage	0.0e+00	99.8
WP_000787036.1\|1212070_1214215_+\|portal	portal protein	V5URY3	Shigella_phage	0.0e+00	100.0
WP_000345010.1\|1214372_1215380_+	hypothetical protein	A0A2R2Z355	Escherichia_phage	2.3e-180	100.0
WP_000214474.1\|1215403_1216618_+\|capsid	N4-gp56 family major capsid protein	A0A2R2Z358	Escherichia_phage	1.3e-233	100.0
WP_001140442.1\|1216673_1217063_+	hypothetical protein	A0A2R2Z353	Escherichia_phage	9.9e-63	100.0
WP_001290743.1\|1217112_1217574_+	hypothetical protein	A0A2R2Z354	Escherichia_phage	7.8e-75	100.0
WP_000829200.1\|1217557_1218121_+	hypothetical protein	A0A2R2Z349	Escherichia_phage	3.2e-102	100.0
WP_000207923.1\|1218120_1218771_+	hypothetical protein	A0A2R2X2B3	Escherichia_phage	7.8e-121	100.0
WP_000117994.1\|1218767_1220705_+\|tail	phage tail fiber C-terminal domain-containing protein	A0A1I9LJS9	Stx_converting_phage	1.1e-64	100.0
WP_001024006.1\|1220706_1220976_+\|tail	phage tail fiber C-terminal domain-containing protein	A0A1I9LJT0	Stx_converting_phage	2.2e-45	100.0
WP_001358663.1\|1221060_1222257_-\|transposase	IS110-like element ISEc20 family transposase	NA	NA	NA	NA
WP_001303606.1\|1222565_1222754_+	hypothetical protein	A0A2R2Z344	Escherichia_phage	6.9e-30	100.0
WP_001146326.1\|1223048_1224674_+	hypothetical protein	A0A1I9LJT3	Stx_converting_phage	0.0e+00	100.0
WP_000197192.1\|1224670_1225939_+	host specificity protein J	A0A2R2Z364	Escherichia_phage	4.9e-220	100.0
WP_000455634.1\|1225953_1226232_+	outer membrane protein	A0A2R2Z367	Escherichia_phage	1.1e-50	100.0
WP_001301884.1\|1226237_1226855_+	hypothetical protein	A0A2R2Z362	Escherichia_phage	1.1e-121	100.0
WP_000835360.1\|1226945_1227680_+	Ail/Lom family outer membrane beta-barrel protein	A0A2R2Z365	Escherichia_phage	1.3e-135	100.0
WP_000078907.1\|1227912_1228053_+	Hok/Gef family protein	A0A2R2X2B4	Escherichia_phage	3.1e-19	100.0
WP_000035558.1\|1228109_1228511_+	hypothetical protein	A0A2R2Z359	Escherichia_phage	3.7e-73	100.0
WP_000509484.1\|1228604_1229261_+	hypothetical protein	A0A2R2Z361	Escherichia_phage	4.1e-109	99.5
WP_000455649.1\|1229263_1229710_+	hypothetical protein	A0A2R2Z357	Escherichia_phage	6.2e-77	100.0
WP_000540391.1\|1229719_1229971_+\|bacteriocin	bacteriocin	A0A2R2Z351	Escherichia_phage	7.9e-13	100.0
WP_000012450.1\|1229981_1231247_+	hypothetical protein	A0A1I9LJU3	Stx_converting_phage	1.4e-206	100.0
WP_000331691.1\|1231316_1239698_+	hypothetical protein	A0A0P0ZCD0	Stx2-converting_phage	0.0e+00	99.7
WP_000756595.1\|1240248_1240593_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	4.6e-56	100.0
WP_000935259.1\|1240712_1240925_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
WP_000426668.1\|1241158_1241554_-	hypothetical protein	A0A1I9LJU8	Stx_converting_phage	4.7e-68	100.0
WP_001120841.1\|1241553_1241961_-	DUF551 domain-containing protein	A0A1I9LJU9	Stx_converting_phage	7.1e-80	99.3
WP_001024844.1\|1242438_1242723_-	DUF4752 family protein	A0A1I9LJV1	Stx_converting_phage	3.2e-47	100.0
WP_000763353.1\|1242719_1242941_-	TraR/DksA family transcriptional regulator	A0A0N7C094	Escherichia_phage	1.3e-35	100.0
WP_000203825.1\|1242988_1243618_-	anti-repressor protein	A0A0N6WET9	Escherichia_phage	2.6e-113	100.0
WP_001273658.1\|1244576_1244750_+	general stress protein	Q9KX95	Enterobacteria_phage	4.9e-06	96.3
WP_001240628.1\|1244832_1246161_-	pyrimidine utilization transport protein G	Q9KX94	Enterobacteria_phage	1.0e-231	98.4
WP_001028095.1\|1246181_1246676_-	pyrimidine utilization flavin reductase protein F	Q9KX93	Enterobacteria_phage	5.0e-51	97.9
WP_001001171.1\|1246686_1247277_-	malonic semialdehyde reductase	NA	NA	NA	NA
WP_001345413.1\|1247286_1248087_-	pyrimidine utilization protein D	NA	NA	NA	NA
WP_001126777.1\|1248094_1248481_-	pyrimidine utilization protein C	NA	NA	NA	NA
WP_001307708.1\|1248492_1249185_-	peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	NA	NA	NA	NA
WP_001297176.1\|1249184_1250276_-	pyrimidine utilization protein A	NA	NA	NA	NA
WP_000191700.1\|1250563_1251202_+	HTH-type transcriptional regulator RutR	NA	NA	NA	NA
WP_001299828.1\|1251241_1255204_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000979516.1\|1255258_1255468_+	hypothetical protein	NA	NA	NA	NA
WP_001018496.1\|1255626_1257135_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000497942.1\|1257800_1258631_+	FTR1 family protein	NA	NA	NA	NA
WP_000154411.1\|1258688_1259816_+	iron uptake system protein EfeO	NA	NA	NA	NA
WP_001199167.1\|1259821_1261093_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_000533522.1\|1261711_1262500_+	phosphate starvation-inducible protein PhoH	R4II13	Cronobacter_phage	7.8e-91	76.7
WP_000009226.1\|1263080_1263767_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000279869.1\|1264390_1265593_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	3.8e-44	34.4
WP_000282209.1\|1265779_1267597_-	hypothetical protein	NA	NA	NA	NA
WP_001303889.1\|1268708_1269005_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000579535.1\|1269231_1269429_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000335710.1\|1269647_1271081_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000282084.1\|1271901_1272465_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000233452.1\|1272619_1274980_+	DEAD/DEAH box helicase family protein	Q84473	Paramecium_bursaria_Chlorella_virus	1.8e-34	32.5
WP_000136079.1\|1275141_1275318_-	hypothetical protein	NA	NA	NA	NA
WP_000998045.1\|1275736_1277275_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.7e-299	99.8
WP_162829202.1\|1277486_1278699_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
1283683:1283699	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1436037 : 1503822

Stx2-converting_phage(37.74%)

tRNA,terminase,holin,tail,integrase,head,capsid,transposase

attL 1431131:1431145|attR 1437612:1437626

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1431131:1431145	attL	NA	NA	NA	NA
WP_000074981.1\|1436037_1437156_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	2.9e-83	43.9
WP_000003742.1\|1437124_1437394_-	excisionase	NA	NA	NA	NA
WP_000048442.1\|1437455_1439921_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.8e-56	57.1
1437612:1437626	attR	NA	NA	NA	NA
WP_001090200.1\|1440013_1440205_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|1440201_1440390_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_122993436.1\|1440729_1440870_+	hypothetical protein	NA	NA	NA	NA
WP_001171930.1\|1440873_1441092_-	hypothetical protein	NA	NA	NA	NA
WP_001447517.1\|1441132_1441522_-	hypothetical protein	NA	NA	NA	NA
WP_001303511.1\|1441817_1442096_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001302048.1\|1442097_1442289_-	hypothetical protein	NA	NA	NA	NA
WP_001169687.1\|1442309_1442681_-	hypothetical protein	NA	NA	NA	NA
WP_001444689.1\|1442778_1443081_+	transcriptional regulator	K7PHA1	Enterobacteria_phage	1.5e-05	34.8
WP_000693943.1\|1443077_1443503_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095671.1\|1443525_1444488_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.1e-69	51.2
WP_001151120.1\|1444528_1444951_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-63	89.9
WP_000004322.1\|1444947_1445202_+	hypothetical protein	A0A0U2RK51	Escherichia_phage	4.8e-42	94.0
WP_001002672.1\|1445194_1445506_+	hypothetical protein	A0A0U2QV73	Escherichia_phage	1.1e-59	97.1
WP_001204666.1\|1445811_1446390_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	2.6e-104	100.0
WP_000156210.1\|1446349_1447447_-	beta family protein	A0A0U2S621	Escherichia_phage	1.4e-210	99.5
WP_162829202.1\|1448081_1449295_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_072058819.1\|1449332_1449473_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.2e-12	95.0
WP_012817871.1\|1449640_1449913_+	hypothetical protein	I6PCV7	Cronobacter_phage	9.4e-12	49.2
WP_001369253.1\|1449914_1450970_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-87	47.8
WP_000140024.1\|1450970_1451336_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-38	64.3
WP_000640048.1\|1451344_1451875_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-72	72.6
WP_000917750.1\|1452116_1452314_+	hypothetical protein	S5MQK8	Escherichia_phage	1.0e-28	98.5
WP_000935544.1\|1452464_1453523_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	2.0e-198	94.0
WP_000874287.1\|1454319_1456170_+	SASA family carbohydrate esterase	H6WZJ9	Escherichia_phage	0.0e+00	98.1
WP_024164617.1\|1456608_1456824_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	98.6
WP_000731236.1\|1456828_1457173_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_000992167.1\|1457223_1457757_+	lysozyme	A0A0N7KZF9	Stx2-converting_phage	7.4e-101	98.9
WP_001056806.1\|1458027_1458597_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|1458596_1458743_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_012816791.1\|1458970_1459156_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000095736.1\|1459580_1459808_-	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_000279788.1\|1459849_1460215_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.0e-65	99.2
WP_000958415.1\|1460505_1461069_+\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	3.8e-79	100.0
WP_001369319.1\|1461065_1462727_+\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	0.0e+00	98.9
WP_000172984.1\|1462790_1464728_+\|capsid	phage major capsid protein	B6ETE8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|1464772_1464994_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000125988.1\|1467682_1468009_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001007905.1\|1468018_1468369_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573391.1\|1468365_1468812_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133388.1\|1468808_1469153_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275472.1\|1469219_1469936_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	5.6e-128	98.7
WP_001030042.1\|1469941_1470316_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	6.6e-64	98.4
WP_001453698.1\|1470411_1470621_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212932.1\|1470672_1473915_+\|tail	phage tail tape measure protein	A0A0P0ZE78	Stx2-converting_phage	0.0e+00	98.5
WP_000807928.1\|1473907_1474249_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	5.3e-60	95.6
WP_001447444.1\|1474248_1474947_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	4.4e-130	97.4
WP_001302649.1\|1474963_1475284_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.0e-49	100.0
WP_001154345.1\|1475391_1475565_+	Arc family DNA-binding protein	A0A0P0ZC65	Stx2-converting_phage	3.4e-23	100.0
WP_000967279.1\|1476612_1477350_+\|tail	phage tail protein	A0A0P0ZDT1	Stx2-converting_phage	1.9e-147	98.8
WP_122996286.1\|1477295_1477928_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_000514853.1\|1478164_1481644_+	host specificity protein J	A0A0P0ZDT4	Stx2-converting_phage	0.0e+00	97.4
WP_001230459.1\|1481711_1482311_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.0e-112	100.0
WP_000268887.1\|1482375_1483698_+\|tail	prophage tail fiber N-terminal domain-containing protein	Q687E6	Enterobacteria_phage	2.4e-76	99.1
WP_001023356.1\|1483699_1483969_+\|tail	phage tail fiber C-terminal domain-containing protein	A0A2R2Z347	Escherichia_phage	2.4e-44	98.9
WP_115801847.1\|1484075_1484165_+	hypothetical protein	NA	NA	NA	NA
WP_001301673.1\|1484184_1486533_+	type III secretion system effector E3 ubiquitin ligase NleL	NA	NA	NA	NA
WP_012817873.1\|1487123_1490525_+	type III secretion system effector EspN	A0A0N7KZG3	Stx2-converting_phage	1.6e-220	39.3
WP_001303921.1\|1491499_1491775_-	hypothetical protein	NA	NA	NA	NA
WP_000938117.1\|1491835_1493197_-	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	4.0e-50	28.9
WP_000799400.1\|1493560_1494424_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531601.1\|1494407_1495544_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000359438.1\|1495793_1497023_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|1497168_1498290_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000735412.1\|1498365_1499826_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1499825_1500497_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|1500664_1502035_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001297479.1\|1502038_1502680_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001297484.1\|1502715_1503822_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_7

1605038 : 1660600

Enterobacteria_phage(46.94%)

terminase,holin,protease,tail,portal,transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000268365.1\|1605038_1605587_+	recombinase family protein	G8I4U3	Mycobacterium_phage	2.7e-21	36.1
WP_162829202.1\|1607433_1608646_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000075578.1\|1608710_1609247_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	4.1e-59	71.9
WP_072127369.1\|1609279_1609561_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.6e-30	75.8
WP_001444682.1\|1609557_1609854_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.4e-47	93.7
WP_001209477.1\|1609850_1610312_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	6.9e-39	95.2
WP_000403788.1\|1610289_1610646_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	6.7e-58	97.5
WP_000137950.1\|1610741_1611113_+	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	2.7e-49	78.9
WP_000610381.1\|1611109_1611463_+	DUF551 domain-containing protein	Q9EY98	Enterobacteria_phage	5.5e-36	65.0
WP_000220602.1\|1611668_1611968_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2R2Z2Y1	Escherichia_phage	1.6e-49	96.0
WP_001260976.1\|1611973_1612231_-	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	6.6e-31	88.0
WP_001447497.1\|1612366_1612645_+	hypothetical protein	I6PCV7	Cronobacter_phage	6.9e-10	46.9
WP_001344904.1\|1612646_1613696_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.0e-109	54.3
WP_000904137.1\|1613708_1614083_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	62.7
WP_000762902.1\|1614079_1614901_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.8e-83	61.9
WP_000917735.1\|1615127_1615325_+	hypothetical protein	S5MQK8	Escherichia_phage	1.8e-28	98.5
WP_000483498.1\|1615475_1616534_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	1.7e-205	98.0
WP_000142980.1\|1617128_1619075_+	DUF1737 domain-containing protein	Q9EYC8	Enterobacteria_phage	0.0e+00	99.1
WP_000143458.1\|1619212_1619392_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290214.1\|1619432_1619678_+	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	3.2e-19	98.8
WP_001072901.1\|1619755_1619971_+\|holin	class II holin family protein	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_001344902.1\|1619974_1620220_+	hypothetical protein	NA	NA	NA	NA
WP_162829202.1\|1620245_1621458_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000992150.1\|1621881_1622415_+	lysozyme	B6DZ92	Enterobacteria_phage	2.1e-100	97.2
WP_001082532.1\|1622713_1623181_+\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	3.9e-74	96.1
WP_000373407.1\|1623594_1624071_+	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	3.3e-84	100.0
WP_001077625.1\|1624067_1626191_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000102413.1\|1626187_1626400_+	hypothetical protein	Q687G1	Enterobacteria_phage	2.3e-29	98.6
WP_000974564.1\|1626399_1627902_+\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_001114424.1\|1627846_1629871_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.8
WP_001097065.1\|1629958_1630285_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_001281350.1\|1630277_1630559_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_000974966.1\|1630561_1631185_+\|tail	phage tail protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_000682716.1\|1631197_1631596_+\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_000235090.1\|1631603_1632356_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000479043.1\|1632369_1632792_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000532073.1\|1632818_1633127_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_000918237.1\|1633170_1635816_+\|tail	phage tail tape measure protein	Q9EYE1	Enterobacteria_phage	0.0e+00	99.4
WP_000847298.1\|1635812_1636142_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001344666.1\|1636849_1637593_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.5e-147	98.4
WP_122996286.1\|1637538_1638171_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_000514851.1\|1638417_1641894_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	96.7
WP_001230455.1\|1641961_1642561_+	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.8e-111	99.0
WP_000279055.1\|1642625_1643939_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZCC1	Stx2-converting_phage	3.7e-77	97.0
WP_001023476.1\|1643940_1644210_+\|tail	phage tail fiber C-terminal domain-containing protein	A0A1U9AJC2	Stx1_converting_phage	2.7e-43	97.8
WP_000692020.1\|1645345_1645936_+	protein kinase	NA	NA	NA	NA
WP_000251936.1\|1646313_1646484_+	hypothetical protein	A0A0U2RK60	Escherichia_phage	9.4e-10	62.5
WP_001079509.1\|1646972_1647479_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001056491.1\|1647524_1648025_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1648110_1648290_-	general stress protein	NA	NA	NA	NA
WP_000443067.1\|1648670_1649477_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209520.1\|1649476_1650670_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000983912.1\|1650681_1652043_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.1e-36	40.2
WP_000763511.1\|1652043_1653639_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194584.1\|1653638_1655201_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1655292_1655337_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|1655474_1656356_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1656352_1656973_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1657073_1657946_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|1657985_1658576_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559281.1\|1658572_1659331_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	24.5
WP_000422045.1\|1659550_1660600_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_8

1737141 : 1775354

Stx2-converting_phage(41.46%)

tRNA,terminase,tail,head,portal,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000628065.1\|1737141_1738374_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|1738628_1739612_+	zinc transporter ZntB	NA	NA	NA	NA
WP_001296046.1\|1739886_1740060_+	hypothetical protein	NA	NA	NA	NA
WP_000123745.1\|1740089_1741463_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157407.1\|1741591_1742527_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_000040839.1\|1742578_1743814_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	3.8e-241	99.5
WP_000079604.1\|1743815_1744031_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_001302840.1\|1744130_1744319_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
WP_001443846.1\|1744356_1744506_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	2.5e-22	95.9
WP_162829202.1\|1744816_1746030_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000285960.1\|1746106_1746283_+	phage antirepressor KilAC domain-containing protein	Q5MBW0	Stx1-converting_phage	3.3e-26	98.3
WP_001280923.1\|1746377_1746509_+	hypothetical protein	A0A0P0ZG36	Escherichia_phage	3.8e-11	93.0
WP_012817877.1\|1746731_1746917_+	membrane protein	A0A1U9AJA4	Stx1_converting_phage	4.0e-22	85.2
WP_000828070.1\|1747317_1747644_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|1747775_1747976_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000829192.1\|1748017_1748383_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_000958380.1\|1748671_1749235_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.1e-89	100.0
WP_001411753.1\|1749231_1750893_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	99.3
WP_000173011.1\|1750956_1752894_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.7
WP_001063099.1\|1752938_1753160_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_012817878.1\|1753105_1755685_+\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	99.8
WP_000125990.1\|1755687_1756014_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001007905.1\|1756023_1756374_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573391.1\|1756370_1756817_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_000133393.1\|1756813_1757158_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_001275445.1\|1757224_1757941_+	immunoglobulin domain-containing protein	A0A0P0ZD29	Stx2-converting_phage	3.7e-124	95.8
WP_001030060.1\|1757946_1758321_+\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	3.0e-64	99.2
WP_001453698.1\|1758416_1758626_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212770.1\|1758677_1761920_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	99.0
WP_000807964.1\|1761912_1762254_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_012817879.1\|1762253_1762952_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	4.0e-131	97.8
WP_000194763.1\|1762962_1763706_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.4e-150	99.2
WP_064732755.1\|1763651_1764284_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	3.4e-97	90.4
WP_000649829.1\|1764474_1765002_-	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-59	60.5
WP_000515042.1\|1765135_1768633_+	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	94.3
WP_001230550.1\|1768703_1769303_+	Ail/Lom family outer membrane beta-barrel protein	B6ETG5	Enterobacteria_phage	3.0e-111	100.0
WP_000268964.1\|1769367_1770681_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZD68	Stx2-converting_phage	9.7e-78	99.1
WP_001023992.1\|1770682_1770952_+\|tail	phage tail fiber C-terminal domain-containing protein	A0A0P0ZCV7	Stx2-converting_phage	4.2e-44	95.5
WP_001131659.1\|1771064_1771640_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	5.3e-89	88.4
WP_001443810.1\|1771712_1772342_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.3e-77	92.2
WP_001143784.1\|1772423_1773065_+	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
WP_001295593.1\|1773645_1774080_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_000837930.1\|1774220_1775354_-	porin OmpN	Q1MVN1	Enterobacteria_phage	1.2e-116	58.3

DBSCAN-SWA_9

1973463 : 2068892

105

Stx2-converting_phage(29.03%)

terminase,holin,tail,protease,integrase,head,capsid,transposase,lysis

attL 2030058:2030074|attR 2064121:2064137

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000214712.1\|1973463_1973667_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000527750.1\|1973702_1975163_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	5.6e-42	30.3
WP_000347482.1\|1975251_1976535_-	MHS family MFS transporter	NA	NA	NA	NA
WP_012817881.1\|1976666_1976909_+	DinI-like family protein	Q687E4	Enterobacteria_phage	1.3e-25	81.9
WP_001345374.1\|1977027_1977177_+	hypothetical protein	NA	NA	NA	NA
WP_001121225.1\|1977504_1978155_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_000491542.1\|1978379_1979255_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	1.5e-162	100.0
WP_001023452.1\|1979395_1979665_-\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	6.4e-45	100.0
WP_162829202.1\|1979754_1980968_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_012817882.1\|1980993_1982778_-	SASA family carbohydrate esterase	H6WZJ9	Escherichia_phage	0.0e+00	96.6
WP_001059384.1\|1984305_1984995_-	antiterminator	I6PDF8	Cronobacter_phage	4.0e-59	51.1
WP_000140002.1\|1984991_1985357_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-38	67.5
WP_001265289.1\|1985357_1986413_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.9e-88	47.6
WP_032178572.1\|1986414_1986693_-	hypothetical protein	I6PCV7	Cronobacter_phage	2.8e-11	48.4
WP_001217394.1\|1986762_1987020_-	hypothetical protein	NA	NA	NA	NA
WP_000961821.1\|1987240_1987453_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.3e-16	72.9
WP_001449026.1\|1987731_1988490_-	AcfC family adhesin Paa	NA	NA	NA	NA
WP_001505071.1\|1989188_1989353_-	hypothetical protein	NA	NA	NA	NA
WP_000450683.1\|1989349_1990084_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.9e-108	84.3
WP_157825328.1\|1990117_1990660_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.5e-85	98.7
WP_000020556.1\|1990571_1991612_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	7.9e-91	87.2
WP_000705622.1\|1991583_1992135_-	hypothetical protein	NA	NA	NA	NA
WP_000787428.1\|1992421_1992829_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_001240336.1\|1993093_1993393_+	hypothetical protein	NA	NA	NA	NA
WP_001171894.1\|1993465_1993684_+	hypothetical protein	NA	NA	NA	NA
WP_000394552.1\|1993706_1994114_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	7.0e-11	37.8
WP_000920491.1\|1994091_1994325_-	hypothetical protein	NA	NA	NA	NA
WP_001342117.1\|1994318_1994486_-	hypothetical protein	NA	NA	NA	NA
WP_000449172.1\|1994885_1995074_+	cell division inhibitor	NA	NA	NA	NA
WP_000199480.1\|1995070_1995259_+	DUF1482 family protein	NA	NA	NA	NA
WP_000048484.1\|1995354_1997826_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.5e-58	57.7
WP_000113189.1\|1997890_1998139_+	excisionase	NA	NA	NA	NA
WP_000113674.1\|1998116_1999247_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.4
WP_000737224.1\|1999292_1999931_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_000028540.1\|2000287_2001031_+	UPF0259 family protein	NA	NA	NA	NA
WP_000808667.1\|2001060_2001600_+	septation protein A	NA	NA	NA	NA
WP_000108160.1\|2001704_2002103_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_000171274.1\|2002142_2002862_-	TonB system transport protein TonB	NA	NA	NA	NA
WP_001261191.1\|2002952_2003306_+	recombinase family protein	NA	NA	NA	NA
WP_001345079.1\|2003654_2004305_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	6.6e-27	32.4
WP_001144879.1\|2005811_2006402_-	T3SS effector guanine nucleotide exchange factor EspM1	NA	NA	NA	NA
WP_001303944.1\|2006585_2007233_+	T3SS effector E3 ubiquitin-protein ligase NleG	B6ETE1	Enterobacteria_phage	1.6e-41	41.1
WP_001414184.1\|2007369_2007516_-	hypothetical protein	NA	NA	NA	NA
WP_001303943.1\|2007943_2008222_+	hypothetical protein	NA	NA	NA	NA
WP_000950979.1\|2009695_2010607_-	type III secretion system effector kinase NleH1-2	A5LH48	Enterobacteria_phage	3.0e-134	82.2
WP_106409364.1\|2010713_2010836_-\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	3.8e-05	91.3
WP_001023476.1\|2011950_2012220_-\|tail	phage tail fiber C-terminal domain-containing protein	A0A1U9AJC2	Stx1_converting_phage	2.7e-43	97.8
WP_000216548.1\|2012221_2013526_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZCC1	Stx2-converting_phage	1.2e-72	95.4
WP_001228290.1\|2013677_2014277_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	4.1e-108	97.0
WP_000514717.1\|2014344_2017818_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	90.2
WP_096860308.1\|2018160_2018793_-\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	2.3e-101	97.1
WP_001369422.1\|2018738_2019482_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.1e-147	97.2
WP_001369426.1\|2019487_2020186_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	7.6e-130	97.0
WP_000807940.1\|2020185_2020527_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	4.7e-61	97.3
WP_000091308.1\|2021980_2022346_+	hypothetical protein	NA	NA	NA	NA
WP_000937595.1\|2022345_2023533_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001453698.1\|2025641_2025851_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030041.1\|2025946_2026321_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	5.0e-64	98.4
WP_001275467.1\|2026326_2027043_-	immunoglobulin domain-containing protein	A0A0P0ZD29	Stx2-converting_phage	4.7e-127	97.9
WP_000133393.1\|2027111_2027456_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	9.4e-57	99.1
WP_000573391.1\|2027452_2027899_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007911.1\|2027895_2028246_-\|head	phage head closure protein	H6WZL5	Escherichia_phage	2.0e-59	100.0
WP_000125984.1\|2028255_2028582_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
2030058:2030074	attL	NA	NA	NA	NA
WP_001063025.1\|2030946_2031168_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000173011.1\|2031212_2033150_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.7
WP_001369319.1\|2033213_2034875_-\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	0.0e+00	98.9
WP_000958415.1\|2034871_2035435_-\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	3.8e-79	100.0
WP_000279803.1\|2035724_2036090_-	HNH endonuclease	B6DZ96	Enterobacteria_phage	2.9e-64	96.7
WP_000095736.1\|2036131_2036359_+	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_000736096.1\|2036727_2036952_-	hypothetical protein	NA	NA	NA	NA
WP_001082554.1\|2036948_2037443_-\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	4.0e-77	93.8
WP_000992122.1\|2037740_2038274_-	lysozyme	A0A0N7KZF9	Stx2-converting_phage	2.8e-100	98.3
WP_000731236.1\|2038324_2038669_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_029785460.1\|2038673_2038889_-\|holin	class II holin family protein	Q6H9V8	Enterobacteria_phage	1.7e-32	97.2
WP_000143036.1\|2039325_2041176_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.4
WP_001344632.1\|2041623_2041755_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	5.2e-08	85.7
WP_000476993.1\|2042133_2042361_-	transcriptional regulator	NA	NA	NA	NA
WP_001003381.1\|2042438_2042846_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000379591.1\|2043038_2043191_+	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_001241298.1\|2043190_2043568_+	hypothetical protein	NA	NA	NA	NA
WP_001328010.1\|2043536_2043824_-	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|2044239_2044428_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083273.1\|2044424_2044616_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000048302.1\|2044709_2047181_+	exonuclease	A0A192Y6E0	Salmonella_phage	3.2e-58	56.1
WP_000005552.1\|2047253_2047505_+	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_000876990.1\|2047539_2048820_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.9e-155	62.1
WP_001360138.1\|2048839_2048950_-	hypothetical protein	NA	NA	NA	NA
WP_000836079.1\|2049007_2050027_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	9.7e-17	25.9
WP_001295394.1\|2050038_2051253_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|2051458_2051785_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705211.1\|2051919_2052261_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138581.1\|2052295_2052856_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|2052858_2053569_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001307224.1\|2053676_2053982_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001342196.1\|2056665_2059089_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.2e-208	48.6
WP_000213028.1\|2059099_2059717_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_000526492.1\|2059718_2060573_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000148710.1\|2060615_2061230_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_071526378.1\|2061388_2062681_+	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000919226.1\|2062633_2063329_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_000225276.1\|2063453_2064674_-	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
2064121:2064137	attR	NA	NA	NA	NA
WP_001019545.1\|2064808_2065702_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000091840.1\|2065808_2067062_+	MFS transporter	NA	NA	NA	NA
WP_000233090.1\|2067887_2067971_+	hypothetical protein	NA	NA	NA	NA
WP_001260840.1\|2068070_2068892_+\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_10

2192372 : 2230788

Enterobacteria_phage(86.11%)

tRNA,terminase,holin,tail,head,portal,plate,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100206497.1\|2192372_2192651_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	6.2e-27	93.4
WP_000159459.1\|2192661_2192940_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.5e-33	78.3
WP_000514277.1\|2192951_2193194_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_162829202.1\|2193258_2194472_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000686506.1\|2196044_2197004_+	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	7.1e-179	98.4
WP_000211267.1\|2197008_2197320_+	plasmid partitioning/stability family protein	A0A0A7NPT5	Enterobacteria_phage	2.2e-41	83.5
WP_001390707.1\|2197684_2197954_+	hypothetical protein	NA	NA	NA	NA
WP_000236489.1\|2198516_2199041_+	hypothetical protein	NA	NA	NA	NA
WP_000087824.1\|2199055_2200102_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.9e-201	99.1
WP_000613748.1\|2200101_2201853_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.3
WP_001262673.1\|2202007_2202844_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	100.0
WP_001055104.1\|2202867_2203920_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.3e-194	97.7
WP_000632344.1\|2203965_2204766_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	6.6e-130	91.4
WP_000063082.1\|2204868_2205363_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-89	99.4
WP_000864901.1\|2205362_2205563_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000104350.1\|2205565_2205889_+\|holin	phage holin family protein	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|2205885_2206278_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_000780569.1\|2206274_2206682_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.5e-66	98.5
WP_000920593.1\|2206819_2207287_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.0e-85	99.4
WP_000356341.1\|2207279_2207915_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.1e-114	99.5
WP_001369311.1\|2207926_2208493_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.1e-98	96.8
WP_001067548.1\|2208510_2208840_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	2.2e-55	100.0
WP_001111942.1\|2208843_2209740_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	1.1e-154	98.0
WP_000071739.1\|2209732_2210263_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	1.1e-93	99.4
WP_000108519.1\|2210265_2212398_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	4.2e-131	66.7
WP_000144026.1\|2212397_2212976_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-95	89.0
WP_000954196.1\|2213019_2213592_-	serine acetyltransferase	NA	NA	NA	NA
WP_000979957.1\|2213748_2214237_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	3.0e-85	99.4
WP_000853433.1\|2214249_2217057_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	94.9
WP_000333503.1\|2217043_2217199_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651581.1\|2217207_2217582_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	6.9e-37	73.2
WP_000290445.1\|2217637_2218150_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	7.8e-92	98.2
WP_000005431.1\|2218149_2219334_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.1e-225	99.0
WP_000132811.1\|2219491_2220601_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	9.6e-204	98.6
WP_001035742.1\|2220826_2222329_+	DNA-binding protein	NA	NA	NA	NA
WP_000488103.1\|2222572_2222833_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078923.1\|2223023_2223164_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	4.5e-18	95.7
WP_001229265.1\|2223470_2223770_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_000672378.1\|2223774_2226162_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000018594.1\|2226176_2227160_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
WP_001386830.1\|2227443_2227488_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124850.1\|2227610_2227967_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2228019_2228217_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001700733.1\|2228313_2228856_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.9
WP_001144192.1\|2228859_2230788_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.2e-130	37.4

DBSCAN-SWA_11

2389425 : 2450812

Stx2-converting_phage(37.93%)

tRNA,terminase,holin,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001258662.1\|2389425_2391198_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891620.1\|2391507_2392074_+	hydrolase	NA	NA	NA	NA
WP_001261931.1\|2392391_2392640_+	DinI-like family protein	A5LH55	Enterobacteria_phage	1.2e-37	96.3
WP_122993326.1\|2393011_2394025_-	peptidase M85	NA	NA	NA	NA
WP_122988840.1\|2394239_2394317_-	hypothetical protein	NA	NA	NA	NA
WP_001023381.1\|2394427_2394697_-\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	1.0e-42	96.6
WP_000279053.1\|2394698_2396012_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q9EYE8	Enterobacteria_phage	6.9e-76	98.6
WP_001230428.1\|2396076_2396676_-	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	1.4e-111	99.5
WP_000515051.1\|2396746_2400244_-	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	94.8
WP_000649829.1\|2400377_2400905_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-59	60.5
WP_064732755.1\|2401095_2401728_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	3.4e-97	90.4
WP_000194763.1\|2401673_2402417_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.4e-150	99.2
WP_012817889.1\|2402427_2403126_-\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	1.6e-127	95.7
WP_000807964.1\|2403125_2403467_-\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_000212809.1\|2403459_2406702_-\|tail	phage tail tape measure protein	H6WZM1	Escherichia_phage	0.0e+00	94.4
WP_001453698.1\|2406753_2406963_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030063.1\|2407058_2407433_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001275508.1\|2407438_2408155_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_000133388.1\|2408213_2408558_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|2408554_2409001_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|2408997_2409348_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125984.1\|2409358_2409685_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001063025.1\|2412211_2412433_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	5.8e-36	100.0
WP_000173011.1\|2412477_2414415_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.7
WP_012817891.1\|2414478_2416140_-\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	99.5
WP_000958380.1\|2416136_2416700_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.1e-89	100.0
WP_000279788.1\|2416990_2417356_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.0e-65	99.2
WP_000095736.1\|2417397_2417625_+	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_012816791.1\|2418049_2418235_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000539792.1\|2418462_2418609_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001056806.1\|2418608_2419178_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000992167.1\|2419448_2419982_-	lysozyme	A0A0N7KZF9	Stx2-converting_phage	7.4e-101	98.9
WP_000731236.1\|2420032_2420377_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.0e-58	100.0
WP_000284515.1\|2420381_2420597_-\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	2.0e-33	100.0
WP_001290230.1\|2420674_2420920_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000143458.1\|2420960_2421140_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_000143120.1\|2421277_2423215_-	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	0.0e+00	99.2
WP_001398907.1\|2423458_2423782_+	anti-adapter protein IraM	Q20GJ2	Phage_258-320	2.0e-61	100.0
WP_000738072.1\|2424079_2424349_-	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_001365678.1\|2424360_2425320_-	Shiga toxin Stx2a subunit A	A0A0P0ZDQ7	Stx2-converting_phage	3.6e-175	99.7
WP_000483505.1\|2425702_2426761_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.9e-205	98.0
WP_000917741.1\|2426912_2427110_-	hypothetical protein	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
WP_001204809.1\|2427325_2427706_-	antitermination protein Q	S5M7R9	Escherichia_phage	1.4e-66	99.2
WP_001202271.1\|2427724_2428714_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.9e-193	98.2
WP_001065352.1\|2428765_2429023_-	hypothetical protein	Q8W639	Enterobacteria_phage	1.2e-21	71.1
WP_000203852.1\|2429019_2430420_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	1.7e-245	92.4
WP_000988196.1\|2430416_2431295_-	ATP-binding protein	Q8W641	Enterobacteria_phage	2.0e-140	96.0
WP_001247844.1\|2431305_2432214_-	hypothetical protein	Q8W642	Enterobacteria_phage	2.4e-59	94.0
WP_000621233.1\|2432200_2432434_-	hypothetical protein	A0A1C9II64	Salmonella_phage	1.6e-12	47.2
WP_000587259.1\|2432430_2433093_-	ash family protein	Q8W643	Enterobacteria_phage	3.7e-110	92.5
WP_001090254.1\|2433201_2433909_-	Rha family transcriptional regulator	Q8W645	Enterobacteria_phage	1.6e-114	90.2
WP_000944728.1\|2433990_2434224_-	helix-turn-helix domain-containing protein	A0A1B5FPK9	Escherichia_phage	1.2e-28	77.0
WP_000800140.1\|2434380_2435070_+	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	5.2e-115	88.2
WP_000387836.1\|2435217_2435919_+	helix-turn-helix domain-containing protein	A0A1B5FPB8	Escherichia_phage	1.5e-37	59.7
WP_000147364.1\|2435915_2436116_+	hypothetical protein	NA	NA	NA	NA
WP_001365075.1\|2436501_2437074_+	hypothetical protein	Q8W653	Enterobacteria_phage	5.5e-78	71.3
WP_000720006.1\|2437443_2438271_+	hypothetical protein	Q8W654	Enterobacteria_phage	1.2e-129	97.5
WP_001484100.1\|2438311_2438683_+	DUF5406 family protein	Q8W655	Enterobacteria_phage	2.3e-61	95.1
WP_001193437.1\|2438874_2439129_+	excisionase family protein	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000063650.1\|2439162_2440449_+	DUF3596 domain-containing protein	Q20GI2	Phage_258-320	6.9e-254	99.8
WP_171895658.1\|2440453_2441230_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	4.7e-72	99.2
WP_000252979.1\|2441282_2441678_+	MAPEG family protein	NA	NA	NA	NA
WP_000019588.1\|2441718_2442462_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564748.1\|2442458_2443430_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000176765.1\|2443594_2446024_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_001214304.1\|2446048_2447149_-	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_001185741.1\|2447536_2448283_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001300190.1\|2448296_2448863_-	VOC family protein	NA	NA	NA	NA
WP_001025336.1\|2449078_2450812_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	6.8e-87	33.7

DBSCAN-SWA_12

2493340 : 2589242

111

Escherichia_phage(33.85%)

terminase,holin,tail,integrase,head,portal,capsid,transposase

attL 2582025:2582084|attR 2587987:2589299

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162829202.1\|2493340_2494553_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000287769.1\|2494669_2495080_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_001015023.1\|2495079_2495445_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_001245704.1\|2495522_2497010_+	alpha-amylase	NA	NA	NA	NA
WP_001344676.1\|2497043_2497457_-	lipoprotein	NA	NA	NA	NA
WP_000118907.1\|2497643_2498849_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_000790498.1\|2498845_2499079_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000334609.1\|2499185_2499857_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	5.6e-82	60.8
WP_000826461.1\|2499896_2501105_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	4.9e-209	93.5
WP_000879833.1\|2502496_2503294_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000734033.1\|2503303_2503855_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_001070440.1\|2504023_2504356_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001274299.1\|2504689_2505004_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_000994449.1\|2505217_2506876_+	flagellar M-ring protein FliF	NA	NA	NA	NA
WP_000067950.1\|2506868_2507864_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_001282694.1\|2507856_2508543_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000213292.1\|2508542_2509916_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000807584.1\|2509934_2510378_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000620091.1\|2510374_2511502_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000133124.1\|2511606_2512071_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_001295641.1\|2512075_2513080_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282098.1\|2513076_2513490_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_001302429.1\|2513492_2513858_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253450.1\|2513857_2514595_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187358.1\|2514604_2514874_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000942326.1\|2514881_2515667_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103994.1\|2515956_2516580_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_000867217.1\|2516623_2516812_-	protein DsrB	NA	NA	NA	NA
WP_000844800.1\|2516974_2517202_+	peroxide/acid resistance protein YodD	NA	NA	NA	NA
WP_000949111.1\|2517499_2518315_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001377491.1\|2518311_2520006_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
WP_000009309.1\|2520176_2520359_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_000922683.1\|2520437_2521355_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001210913.1\|2521527_2522448_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000786004.1\|2522436_2522907_-	VSPR family DNA mismatch endonuclease	E5E3X5	Burkholderia_phage	1.5e-33	47.6
WP_001157238.1\|2522887_2524306_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.8e-101	55.3
WP_000365565.1\|2524372_2525068_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	28.0
WP_001313057.1\|2525107_2525473_-	hypothetical protein	NA	NA	NA	NA
WP_000824375.1\|2526039_2527203_+	porin OmpC	Q1MVN1	Enterobacteria_phage	7.2e-109	56.2
WP_000218214.1\|2527793_2528645_+	protein deglycase HchA	NA	NA	NA	NA
WP_000826738.1\|2528752_2530111_-	two-component system sensor histidine kinase HprS	NA	NA	NA	NA
WP_001339045.1\|2530110_2530782_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
WP_000920136.1\|2530914_2531328_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000730130.1\|2531436_2532441_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_001240109.1\|2532441_2533077_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_001007759.1\|2533333_2533984_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_001079074.1\|2534326_2534857_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0
WP_122993429.1\|2536091_2537105_-	peptidase M85	NA	NA	NA	NA
WP_001023476.1\|2537510_2537780_-\|tail	phage tail fiber C-terminal domain-containing protein	A0A1U9AJC2	Stx1_converting_phage	2.7e-43	97.8
WP_000279057.1\|2537781_2539095_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZCC1	Stx2-converting_phage	3.7e-77	97.0
WP_001230455.1\|2539159_2539759_-	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.8e-111	99.0
WP_000514844.1\|2539825_2543302_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	99.7
WP_122996286.1\|2543548_2544181_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_001369128.1\|2544126_2544870_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	3.3e-147	98.0
WP_001152113.1\|2544875_2545574_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.7e-132	99.1
WP_000847298.1\|2545573_2545903_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000081781.1\|2545899_2548512_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	96.0
WP_000533440.1\|2548492_2548906_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_000479045.1\|2548932_2549355_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	1.7e-71	98.6
WP_000235098.1\|2549368_2550121_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	4.9e-135	99.2
WP_000683079.1\|2550128_2550524_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000974980.1\|2550520_2551054_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.6e-58	66.7
WP_001204554.1\|2551069_2551423_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
WP_000201501.1\|2551415_2551799_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522591.1\|2551850_2552879_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.6e-112	61.0
WP_000256823.1\|2552936_2553284_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	8.9e-23	58.1
WP_001253979.1\|2553320_2554826_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.0e-99	53.5
WP_001369121.1\|2554815_2556408_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	7.1e-184	60.9
WP_000259002.1\|2556404_2556611_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001426431.1\|2556594_2558523_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.6e-262	66.4
WP_001426432.1\|2558494_2559001_-\|terminase	terminase small subunit	O64316	Escherichia_phage	7.4e-34	47.3
WP_001444498.1\|2559427_2559652_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.3e-19	90.6
WP_001302717.1\|2559733_2560048_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_012817896.1\|2560574_2560760_-	membrane protein	A0A1U9AJA4	Stx1_converting_phage	4.0e-22	83.6
WP_001092858.1\|2561277_2561811_-	lysozyme	Q6H9V6	Enterobacteria_phage	1.9e-101	96.0
WP_000284516.1\|2562373_2562589_-\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	97.2
WP_001290231.1\|2562665_2562938_-	DUF826 domain-containing protein	A0A0P0ZBB8	Stx2-converting_phage	2.2e-21	100.0
WP_000143458.1\|2562978_2563158_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_000023159.1\|2563295_2565233_-	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	0.0e+00	96.9
WP_000466957.1\|2565711_2566143_-	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
WP_000422741.1\|2566230_2566656_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|2566652_2567003_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080194.1\|2567033_2568647_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.4e-181	64.0
WP_000301789.1\|2569132_2569846_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000917764.1\|2569980_2570178_-	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	98.5
WP_000640033.1\|2570401_2570956_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	8.0e-66	67.4
WP_001217447.1\|2570964_2571324_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.0e-37	63.5
WP_001265229.1\|2571336_2572386_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-110	54.6
WP_000191872.1\|2572387_2572660_-	hypothetical protein	S4TNP0	Salmonella_phage	1.1e-12	53.0
WP_000756596.1\|2572781_2573126_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	6.1e-56	99.1
WP_000935259.1\|2573245_2573458_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
WP_000104474.1\|2573691_2574249_-	DUF551 domain-containing protein	A0A0N7KZV3	Escherichia_phage	2.8e-34	41.7
WP_000683609.1\|2574250_2574469_-	DUF4014 family protein	A0A2R2Z311	Escherichia_phage	2.3e-21	72.2
WP_000034815.1\|2574596_2574908_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	1.6e-55	91.3
WP_000699809.1\|2574900_2575128_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	5.1e-11	49.3
WP_000603384.1\|2575124_2575406_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.0e-29	73.6
WP_000450617.1\|2575438_2576155_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.1e-71	62.6
WP_000788760.1\|2576176_2576923_-	ATP-binding protein	A0A088CBP4	Shigella_phage	3.6e-114	83.2
WP_001262366.1\|2576929_2578000_-	hypothetical protein	A0A088CD36	Shigella_phage	1.7e-64	65.7
WP_000693883.1\|2578071_2578497_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000391948.1\|2578480_2578762_-	helix-turn-helix domain-containing protein	K7PHA1	Enterobacteria_phage	8.5e-24	72.6
WP_000362152.1\|2578861_2579281_+	hypothetical protein	K7PK07	Enterobacteria_phage	4.0e-25	65.1
WP_001345283.1\|2579546_2579699_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.7e-07	53.2
WP_000394546.1\|2579710_2580349_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_001133034.1\|2580349_2580559_-	hypothetical protein	NA	NA	NA	NA
WP_000449192.1\|2581129_2581318_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001090200.1\|2581314_2581506_+	DUF1482 family protein	NA	NA	NA	NA
2582025:2582084	attL	NA	NA	NA	NA
WP_162829202.1\|2582066_2583280_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_001300307.1\|2585519_2586317_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001345280.1\|2586672_2587947_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.4e-76	40.9
WP_162829202.1\|2588028_2589242_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
2587987:2589299	attR	NA	NA	NA	NA

DBSCAN-SWA_13

2604200 : 2660872

Enterobacteria_phage(42.47%)

terminase,holin,coat,integrase,head,portal,transposase,lysis

attL 2589966:2589980|attR 2662551:2662565

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2589966:2589980	attL	NA	NA	NA	NA
WP_162829202.1\|2604200_2605413_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000068481.1\|2606038_2606698_+	hypothetical protein	NA	NA	NA	NA
WP_000775497.1\|2606833_2607517_+	hypothetical protein	NA	NA	NA	NA
WP_000846711.1\|2607532_2607943_+	hypothetical protein	NA	NA	NA	NA
WP_001234505.1\|2608163_2608985_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.0e-45	38.1
WP_000860076.1\|2609066_2609546_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	8.9e-13	33.8
WP_001186773.1\|2609561_2610038_+	RadC family protein	NA	NA	NA	NA
WP_000692345.1\|2610106_2610328_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001285585.1\|2610401_2610770_+	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000988599.1\|2611228_2611423_+	hypothetical protein	NA	NA	NA	NA
WP_001161660.1\|2611435_2611549_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001016348.1\|2612037_2612220_+	hypothetical protein	NA	NA	NA	NA
WP_000450409.1\|2612320_2612650_-	DUF496 family protein	NA	NA	NA	NA
WP_001105393.1\|2614078_2614552_-	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_162829202.1\|2614691_2615905_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_001369224.1\|2615983_2617150_-	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	7.2e-226	98.5
WP_001345271.1\|2618003_2618912_+	acyltransferase	NA	NA	NA	NA
WP_000129903.1\|2618952_2620890_-	right-handed parallel beta-helix repeat-containing protein	A0A140G5Z9	Enterobacteria_phage	1.9e-271	88.9
WP_001084290.1\|2621068_2622004_-	phage antirepressor Ant	A0A2H4FRZ6	Salmonella_phage	2.2e-177	99.0
WP_000677939.1\|2622072_2622234_-	Arc family DNA-binding protein	A8CG91	Salmonella_phage	2.7e-22	98.1
WP_000090241.1\|2622324_2622576_+	Arc family DNA-binding protein	B9UDL4	Salmonella_phage	1.3e-39	98.8
WP_000821222.1\|2622592_2623012_-	hypothetical protein	B9UDL3	Salmonella_phage	1.5e-72	97.8
WP_001334102.1\|2623149_2623518_+	hypothetical protein	I6S5X4	Salmonella_phage	2.9e-64	98.4
WP_001345269.1\|2623542_2625381_-	hypothetical protein	A0A192Y934	Salmonella_phage	4.7e-248	74.6
WP_000382045.1\|2625380_2626787_-	phage DNA ejection protein	I6RSG0	Salmonella_phage	1.2e-126	55.2
WP_000964882.1\|2626796_2627489_-	DNA transfer protein	G5DA80	Enterobacteria_phage	9.2e-112	100.0
WP_000627632.1\|2627491_2627947_-	DUF2824 family protein	A0A2D1GLX4	Escherichia_phage	1.8e-87	100.0
WP_000785561.1\|2627946_2628648_-	hypothetical protein	A5VW68	Enterobacteria_phage	5.1e-118	97.0
WP_000947776.1\|2628640_2629174_-	HNH endonuclease	A0A1V0E5R7	Salmonella_phage	1.1e-35	48.3
WP_001122404.1\|2629195_2630614_-	Packaged DNA stabilization protein gp10	A0A088CQ70	Enterobacteria_phage	5.3e-255	91.5
WP_001140510.1\|2630623_2631085_-\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
WP_000966051.1\|2631065_2631242_-	hypothetical protein	A0A088CPR7	Enterobacteria_phage	4.8e-25	98.3
WP_162829202.1\|2631284_2632498_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000013275.1\|2632608_2633862_-\|coat	coat protein	A5VW72	Enterobacteria_phage	1.7e-233	98.6
WP_162829202.1\|2634475_2635688_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000818367.1\|2636177_2638376_-\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	99.5
WP_000200766.1\|2638377_2639793_-\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	1.2e-278	99.8
WP_001436504.1\|2639789_2640212_-	hypothetical protein	Q716H4	Shigella_phage	7.2e-75	100.0
WP_000205033.1\|2640235_2640415_-	hypothetical protein	A0A088CPS9	Enterobacteria_phage	2.1e-23	93.2
WP_000139136.1\|2640424_2640712_-	hypothetical protein	I1TQD4	Pseudomonas_phage	1.6e-06	33.3
WP_000807789.1\|2640715_2640958_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	3.7e-36	100.0
WP_000999693.1\|2641061_2641442_-	hypothetical protein	Q716B1	Shigella_phage	6.7e-64	96.8
WP_001668490.1\|2641673_2642156_-	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	3.2e-79	94.3
WP_000092296.1\|2642397_2642835_-\|lysis	lysis protein	K7P710	Enterobacteria_phage	1.1e-70	97.2
WP_000229402.1\|2642831_2643308_-	glycoside hydrolase family protein	A5VW81	Enterobacteria_phage	4.9e-88	98.7
WP_000783734.1\|2643291_2643615_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_000512813.1\|2644076_2644595_-	DUF1133 family protein	Q716B8	Shigella_phage	5.0e-94	97.7
WP_001271131.1\|2644585_2645257_-	serine/threonine protein phosphatase	K7P7K6	Enterobacteria_phage	2.1e-129	98.2
WP_000144614.1\|2645234_2645441_-	protein ninH	Q716C0	Shigella_phage	7.3e-33	100.0
WP_001223932.1\|2645437_2646040_-	recombination protein NinG	A0A1U9AJF8	Stx1_converting_phage	9.8e-94	96.6
WP_001108084.1\|2646014_2646581_-	HNH endonuclease	A0A1U9AJK5	Stx1_converting_phage	6.6e-108	99.5
WP_000566872.1\|2646573_2646744_-	protein ninF	K7PM86	Enterobacteria_phage	1.2e-25	100.0
WP_001254257.1\|2646740_2646923_-	NinE family protein	A0A0P0ZC71	Stx2-converting_phage	4.3e-29	100.0
WP_000153271.1\|2646919_2647447_-	phage N-6-adenine-methyltransferase	K7PJZ4	Enterobacterial_phage	3.6e-100	99.4
WP_001303571.1\|2647443_2647890_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	2.4e-81	100.0
WP_001449504.1\|2647846_2648083_-	restriction alleviation protein, Lar family	Q687G3	Enterobacteria_phage	9.3e-40	100.0
WP_000103678.1\|2648093_2648309_-	hypothetical protein	A0A0N7KZ98	Stx2-converting_phage	7.7e-33	100.0
WP_001000130.1\|2648441_2648720_-	hypothetical protein	Q9EYB9	Enterobacteria_phage	4.4e-49	100.0
WP_001036037.1\|2648789_2649059_-	hypothetical protein	Q687G4	Enterobacteria_phage	8.4e-45	100.0
WP_000131499.1\|2649058_2650495_-	AAA family ATPase	Q8VNP7	Enterobacteria_phage	1.4e-274	99.8
WP_000065673.1\|2650484_2651384_-	hypothetical protein	A0A0N7C1Z7	Escherichia_phage	7.4e-162	98.3
WP_000166207.1\|2651376_2651523_-	DUF2740 family protein	Q687G5	Enterobacteria_phage	1.1e-19	100.0
WP_000438527.1\|2651555_2651852_-	hypothetical protein	A4KWW1	Enterobacteria_phage	1.5e-47	99.0
WP_000067727.1\|2651993_2652209_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_016242500.1\|2652284_2652980_+	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	8.3e-129	96.1
WP_000088201.1\|2653325_2653598_+	hypothetical protein	A0A0N7C217	Escherichia_phage	7.4e-41	98.9
WP_000214161.1\|2653726_2653927_+	Restriction inhibitor protein ral	A0A0K2FJE6	Enterobacteria_phage	6.0e-32	97.0
WP_000167579.1\|2653992_2654463_+	hypothetical protein	G9L670	Escherichia_phage	8.2e-88	99.4
WP_001183771.1\|2654657_2654828_+	hypothetical protein	A0A192Y6R1	Salmonella_phage	1.3e-24	100.0
WP_000050554.1\|2654903_2655074_+	hypothetical protein	K7PJW0	Enterobacteria_phage	3.0e-24	100.0
WP_000031374.1\|2655084_2655690_+	ERF family protein	K7P6W7	Enterobacteria_phage	2.1e-107	99.5
WP_000951320.1\|2655689_2656073_+	hypothetical protein	K7P6P8	Enterobacteria_phage	1.9e-66	98.4
WP_001111307.1\|2656096_2656390_+	DUF2856 family protein	K7P7E6	Enterobacteria_phage	3.2e-50	97.9
WP_001214466.1\|2656400_2656568_+	DUF2737 family protein	Q716F2	Shigella_phage	4.7e-22	96.4
WP_000109677.1\|2656564_2656864_+	hypothetical protein	A5VWB2	Enterobacteria_phage	1.1e-56	97.0
WP_001033097.1\|2656865_2657420_+	ead/Ea22-like family protein	Q76H45	Enterobacteria_phage	1.0e-57	87.7
WP_001261535.1\|2657419_2657596_+	hypothetical protein	A0A0F6TJP6	Escherichia_coli_O157_typing_phage	4.5e-23	96.6
WP_000797282.1\|2657592_2657781_+	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	1.2e-29	95.2
WP_000951710.1\|2657782_2657992_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.8e-34	94.2
WP_000208130.1\|2657988_2658792_+	hypothetical protein	Q8HAA7	Salmonella_phage	2.2e-48	50.6
WP_000002108.1\|2658784_2659069_+	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	9.1e-50	98.9
WP_000227131.1\|2659140_2659440_+	hypothetical protein	Q9G076	Enterobacteria_phage	3.0e-51	97.0
WP_000132739.1\|2659521_2659713_+	AlpA family phage regulatory protein	A0A0P0ZBL0	Stx2-converting_phage	1.7e-31	100.0
WP_001007947.1\|2659693_2660872_-\|integrase	site-specific integrase	A0A0P0ZDN8	Stx2-converting_phage	1.8e-232	100.0
2662551:2662565	attR	NA	NA	NA	NA

DBSCAN-SWA_14

2855321 : 2922888

Enterobacteria_phage(21.43%)

terminase,protease,holin,integrase,capsid,lysis

attL 2893264:2893299|attR 2923828:2923863

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000101907.1\|2855321_2856563_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.6e-98	43.1
WP_000387403.1\|2857059_2857266_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001345228.1\|2857220_2859029_+	host cell division inhibitor Icd-like protein	A0A2H4JGN8	uncultured_Caudovirales_phage	2.9e-08	41.1
WP_023981888.1\|2859244_2859484_+	hypothetical protein	NA	NA	NA	NA
WP_001204078.1\|2859456_2859690_+	hypothetical protein	NA	NA	NA	NA
WP_001205000.1\|2859682_2859916_+	hypothetical protein	NA	NA	NA	NA
WP_000770163.1\|2859921_2860221_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000833625.1\|2860217_2861618_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.6e-115	60.1
WP_001080641.1\|2861819_2862065_+	hypothetical protein	NA	NA	NA	NA
WP_000391151.1\|2862195_2862390_+	hypothetical protein	NA	NA	NA	NA
WP_001018604.1\|2862393_2862555_+	hypothetical protein	NA	NA	NA	NA
WP_001229488.1\|2862682_2863171_+\|terminase	terminase small subunit	A0A0P0ZCQ9	Stx2-converting_phage	3.9e-24	41.7
WP_000006073.1\|2863182_2863344_+	hypothetical protein	NA	NA	NA	NA
WP_001369202.1\|2863333_2864257_+\|capsid	phage major capsid protein	A0A0R6PHC6	Moraxella_phage	1.2e-13	24.9
WP_001113637.1\|2867634_2868282_+	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_001211568.1\|2868316_2869369_-	cytochrome c-type biogenesis thiol:disulfide oxidoreductase CcmH	NA	NA	NA	NA
WP_000824439.1\|2869365_2869923_-	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_000982426.1\|2869919_2871863_-	cytochrome c-type biogenesis heme lyase CcmF	NA	NA	NA	NA
WP_001026418.1\|2871859_2872339_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_000186540.1\|2872335_2872545_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_001295447.1\|2872541_2873279_-	heme exporter protein CcmC	NA	NA	NA	NA
WP_000971722.1\|2873320_2873983_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_000888560.1\|2873979_2874597_-	cytochrome c biogenesis heme-transporting ATPase CcmA	G3M9Y6	Bacillus_virus	1.9e-12	25.5
WP_000528376.1\|2874615_2875218_-	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_000835176.1\|2875227_2875677_-	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_000013506.1\|2875673_2876537_-	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_000091291.1\|2876523_2877219_-	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_000778069.1\|2877225_2879712_-	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_000557378.1\|2879708_2879972_-	chaperone NapD	NA	NA	NA	NA
WP_000686723.1\|2879961_2880456_-	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_000849214.1\|2880864_2881353_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000758043.1\|2881501_2883148_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_000422230.1\|2883365_2885009_-	microcin J25 efflux ABC transporter YojI	W8CYL7	Bacillus_phage	9.5e-14	24.0
WP_000884922.1\|2885084_2885735_-	DNA oxidative demethylase AlkB	A0A2K9L3R7	Tupanvirus	1.4e-05	31.7
WP_000786386.1\|2885734_2886799_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.8e-18	50.5
WP_000406116.1\|2886872_2887928_-	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
WP_000865576.1\|2888039_2889131_-	porin OmpC	Q1MVN1	Enterobacteria_phage	9.4e-119	60.1
WP_001249151.1\|2889869_2892542_+	phosphotransferase RcsD	NA	NA	NA	NA
WP_001061917.1\|2892558_2893209_+	transcriptional regulator RcsB	NA	NA	NA	NA
2893264:2893299	attL	NA	NA	NA	NA
WP_000876032.1\|2893408_2896258_-	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	1.4e-41	27.2
WP_001225855.1\|2896532_2897309_-	YfaP family protein	NA	NA	NA	NA
WP_001104541.1\|2897313_2898963_-	DUF2300 domain-containing protein	NA	NA	NA	NA
WP_122993426.1\|2898963_2903358_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_001025665.1\|2904159_2905482_+	type III secretion system effector NleA	H6WZN2	Escherichia_phage	9.7e-227	85.5
WP_001443833.1\|2906175_2906709_-	T3SS effector NleG family protein	B6DZC0	Enterobacteria_phage	6.4e-28	42.0
WP_000092247.1\|2907462_2907900_-\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	5.0e-71	97.9
WP_000075144.1\|2907896_2908394_-	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	1.9e-90	98.2
WP_000284524.1\|2908393_2908609_-\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_012578864.1\|2908751_2909150_+	hypothetical protein	H6WZJ8	Escherichia_phage	6.9e-11	83.3
WP_000499454.1\|2909230_2909389_-	DUF3927 family protein	NA	NA	NA	NA
WP_001235460.1\|2910481_2911105_-	antitermination protein	K7PM87	Enterobacteria_phage	9.8e-113	98.6
WP_001028854.1\|2911101_2911767_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_001223927.1\|2911763_2912366_-	recombination protein NinG	A0A1U9AJF8	Stx1_converting_phage	1.6e-91	94.6
WP_001108084.1\|2912340_2912907_-	HNH endonuclease	A0A1U9AJK5	Stx1_converting_phage	6.6e-108	99.5
WP_042352449.1\|2913448_2914381_+	hypothetical protein	A0A1U9AJG3	Stx1_converting_phage	6.1e-151	99.7
WP_001345214.1\|2914419_2915247_+	hypothetical protein	A0A1U9AJG3	Stx1_converting_phage	1.6e-150	99.6
WP_001254228.1\|2915750_2915933_-	NinE family protein	A0A1U9AJF6	Stx1_converting_phage	1.1e-29	100.0
WP_001281192.1\|2916089_2916434_+	hypothetical protein	K7PJY7	Enterobacterial_phage	5.3e-60	100.0
WP_001444001.1\|2916539_2916758_+	excisionase	K7PKU2	Enterobacteria_phage	2.4e-34	98.6
WP_000533670.1\|2916735_2917806_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	1.1e-196	98.0
WP_001215757.1\|2917800_2918427_-	DUF1175 domain-containing protein	NA	NA	NA	NA
WP_000012296.1\|2918423_2920112_-	DUF2138 domain-containing protein	NA	NA	NA	NA
WP_001281242.1\|2920260_2922888_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	8.1e-92	30.4
2923828:2923863	attR	NA	NA	NA	NA

DBSCAN-SWA_15

3272608 : 3385498

105

Enterobacteria_phage(52.0%)

tRNA,terminase,protease,tail,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298974.1\|3272608_3273346_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|3273477_3274812_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_000365855.1\|3275021_3275903_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000627807.1\|3276650_3277034_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262716.1\|3277337_3278027_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
WP_000997403.1\|3278074_3279112_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|3279318_3279738_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001341635.1\|3279806_3280505_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000083007.1\|3280536_3283197_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|3283310_3284666_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001300818.1\|3284711_3285035_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|3285031_3286330_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_001235102.1\|3292182_3294756_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000040115.1\|3294885_3295617_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079107.1\|3295613_3296594_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|3296728_3297466_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|3297736_3298078_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|3298181_3298229_+	hypothetical protein	NA	NA	NA	NA
WP_000200116.1\|3298327_3299488_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225214.1\|3299530_3300652_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168054.1\|3300662_3301733_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.3e-90	51.2
WP_000976004.1\|3301942_3302308_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212391.1\|3302457_3302976_+	YfiR family protein	NA	NA	NA	NA
WP_000969032.1\|3302965_3304192_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589821.1\|3304207_3304690_+	OmpA family protein	NA	NA	NA	NA
WP_000065253.1\|3304766_3305114_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264774.1\|3305155_3305923_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|3305953_3306502_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|3306520_3306769_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460032.1\|3307017_3308379_-	signal recognition particle protein	NA	NA	NA	NA
WP_001338897.1\|3308545_3309337_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|3309357_3310644_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|3310698_3311292_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059169.1\|3311414_3312293_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880910.1\|3312378_3314040_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|3314188_3314530_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117838.1\|3314591_3314882_-	RnfH family protein	NA	NA	NA	NA
WP_000600190.1\|3314871_3315348_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|3315479_3315962_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_001217540.1\|3316810_3317059_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-38	100.0
WP_001023452.1\|3317426_3317696_-\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	6.4e-45	100.0
WP_000279055.1\|3317697_3319011_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZCC1	Stx2-converting_phage	3.7e-77	97.0
WP_001230459.1\|3319075_3319675_-	Ail/Lom family outer membrane beta-barrel protein	Q687E7	Enterobacteria_phage	8.0e-112	100.0
WP_000514843.1\|3319742_3323219_-	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	99.7
WP_122996286.1\|3323465_3324098_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.0e-104	97.6
WP_001369128.1\|3324043_3324787_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	3.3e-147	98.0
WP_001152113.1\|3324792_3325491_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	4.7e-132	99.1
WP_000847298.1\|3325490_3325820_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000918236.1\|3325816_3328462_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	99.8
WP_000532073.1\|3328505_3328814_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_000479043.1\|3328840_3329263_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000235090.1\|3329276_3330029_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_162829202.1\|3330381_3331594_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_001108006.1\|3332342_3332948_+	recombination protein NinG	Q8VNP2	Enterobacteria_phage	1.9e-97	100.0
WP_000144764.1\|3332944_3333139_+	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_001204849.1\|3333131_3333566_+	antitermination protein	Q8VNP1	Enterobacteria_phage	4.3e-83	100.0
WP_000691354.1\|3334072_3335020_+	Shiga toxin Stx1 subunit A	Q777W4	Enterobacteria_phage	3.2e-171	100.0
WP_000752026.1\|3335029_3335299_+	Shiga toxin Stx1a subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
WP_012816791.1\|3336302_3336488_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000373407.1\|3336962_3337439_+	DUF1441 family protein	Q8VNN8	Enterobacteria_phage	3.3e-84	100.0
WP_001077625.1\|3337435_3339559_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000102413.1\|3339555_3339768_+	hypothetical protein	Q687G1	Enterobacteria_phage	2.3e-29	98.6
WP_000974557.1\|3339767_3341270_+\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	3.1e-290	99.8
WP_001114424.1\|3341214_3343239_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.8
WP_001097065.1\|3343326_3343653_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_001281348.1\|3343645_3343927_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	2.1e-46	100.0
WP_000974958.1\|3343929_3344553_+\|tail	phage tail protein	Q8VNN3	Enterobacteria_phage	8.9e-106	100.0
WP_000682711.1\|3344565_3344712_+	hypothetical protein	Q687G0	Enterobacteria_phage	3.5e-21	100.0
WP_162829202.1\|3344714_3345928_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000448925.1\|3347006_3347423_+	hypothetical protein	A0A1B5FPM5	Escherichia_phage	1.1e-72	100.0
WP_000214990.1\|3347496_3349245_-	hypothetical protein	A0A1B5FPH1	Escherichia_phage	0.0e+00	99.8
WP_001426837.1\|3349246_3350965_-	ATP-binding protein	A0A1B5FPD5	Escherichia_phage	5.5e-307	99.7
WP_000993087.1\|3352525_3353503_+	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_000271938.1\|3353522_3354791_+	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_000772858.1\|3354813_3356262_+	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_001087606.1\|3356275_3357556_+	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	2.4e-33	30.1
WP_001344737.1\|3357866_3359267_+	GABA permease	NA	NA	NA	NA
WP_000156811.1\|3359287_3359950_+	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_000522424.1\|3359950_3360400_-	potassium binding protein Kbp	A0A090DBR9	Clostridium_phage	2.0e-06	39.5
WP_000508177.1\|3360483_3360642_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000137280.1\|3360824_3361124_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001229468.1\|3361133_3361658_+	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA
WP_000115383.1\|3361704_3362109_-	DNA-binding protein StpA	NA	NA	NA	NA
WP_000492649.1\|3362776_3363226_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_000281320.1\|3363262_3363607_-	YgaC family protein	NA	NA	NA	NA
WP_001295174.1\|3363758_3364088_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_001223219.1\|3364335_3364581_+	glutaredoxin-like protein NrdH	Q5K5J3	Oenococcus_phage	4.1e-06	35.3
WP_000080947.1\|3364577_3364988_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	4.6e-18	44.4
WP_000246506.1\|3364960_3367105_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.3e-195	48.0
WP_000777939.1\|3367114_3368074_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	5.9e-133	71.5
WP_000985494.1\|3368428_3369631_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.9e-28	39.4
WP_000774994.1\|3369623_3370688_+	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_001216521.1\|3370745_3371738_+	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000165722.1\|3371929_3373114_+	MFS transporter	NA	NA	NA	NA
WP_000445658.1\|3373237_3373975_+	L-valine exporter subunit YgaZ	NA	NA	NA	NA
WP_000119771.1\|3373964_3374300_+	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_000378442.1\|3374390_3374921_+	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA
WP_001295175.1\|3375047_3376220_+	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_001295176.1\|3376236_3377775_+	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001130207.1\|3377838_3378354_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_000611802.1\|3378503_3380060_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001287457.1\|3380132_3380561_-	DedA family protein	NA	NA	NA	NA
WP_000273309.1\|3380557_3381124_-	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_000906486.1\|3382447_3382633_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000047176.1\|3382867_3385498_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	5.5e-80	38.6

DBSCAN-SWA_16

3422493 : 3429633

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3422493_3425055_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141347.1\|3425160_3425817_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	5.6e-50	47.2
WP_001297141.1\|3425867_3426635_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847985.1\|3426830_3427739_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590389.1\|3427735_3428998_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.4
WP_001278994.1\|3428994_3429633_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_17

4957578 : 5002491

Enterobacteria_phage(34.09%)

tRNA,terminase,holin,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000956557.1\|4957578_4958112_+	hypothetical protein	K7PKJ4	Enterobacteria_phage	1.1e-99	100.0
WP_000654815.1\|4958308_4958482_+	hypothetical protein	K7PJQ2	Enterobacteria_phage	4.4e-23	100.0
WP_001093918.1\|4958529_4958811_-	pyocin activator PrtN family protein	K7PGU0	Enterobacteria_phage	8.7e-45	98.9
WP_001061339.1\|4958847_4959420_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	6.7e-108	97.9
WP_001094871.1\|4959419_4960154_-	DUF551 domain-containing protein	S5MC19	Escherichia_phage	1.4e-139	98.8
WP_001014294.1\|4960156_4960348_-	hypothetical protein	G9L660	Escherichia_phage	9.5e-27	100.0
WP_171844465.1\|4960400_4960679_-	hypothetical protein	A0A076GCN9	Escherichia_phage	1.2e-30	74.4
WP_000145671.1\|4960963_4961437_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.0e-66	75.5
WP_001242740.1\|4961433_4961784_-	hypothetical protein	A0A0P0ZBF8	Stx2-converting_phage	1.6e-56	94.8
WP_000008211.1\|4961774_4962311_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	3.1e-99	98.3
WP_000081302.1\|4962438_4963263_-	YfdQ family protein	Q8SBF9	Shigella_phage	1.0e-149	99.6
WP_000135680.1\|4963328_4963691_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_001345148.1\|4964394_4965087_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	8.3e-121	96.1
WP_001191679.1\|4965184_4965445_+	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	7.8e-40	97.7
WP_000515862.1\|4965437_4965989_+	hypothetical protein	Q8SBF4	Shigella_phage	9.9e-101	99.5
WP_001047110.1\|4967501_4968254_+	antitermination protein	K7PGU5	Enterobacteria_phage	5.3e-137	99.2
WP_001339373.1\|4968563_4968716_+	restriction endonuclease subunit M	A0A2R2Z327	Escherichia_phage	3.4e-19	98.0
WP_000143075.1\|4969533_4971384_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.9
WP_024164617.1\|4971823_4972039_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	98.6
WP_000075132.1\|4972038_4972536_+	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_001208681.1\|4972752_4972938_+	membrane protein	A0A1U9AJA4	Stx1_converting_phage	2.9e-20	78.7
WP_001303878.1\|4973465_4973780_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_000958398.1\|4974680_4975244_+\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	7.3e-83	94.1
WP_009453642.1\|4975240_4976902_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	98.7
WP_000173088.1\|4976965_4978903_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	98.4
WP_001063096.1\|4978947_4979169_+	hypothetical protein	H6WZL1	Escherichia_phage	3.4e-36	100.0
WP_000125988.1\|4981532_4981859_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001007905.1\|4981868_4982219_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|4982215_4982662_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|4982658_4983003_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275461.1\|4983069_4983786_+	immunoglobulin domain-containing protein	A0A0P0ZD29	Stx2-converting_phage	2.1e-127	98.3
WP_001030043.1\|4983791_4984166_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001453698.1\|4984261_4984471_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212952.1\|4984522_4987765_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	93.2
WP_000807964.1\|4987757_4988099_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	8.7e-63	100.0
WP_001152209.1\|4988098_4988797_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	3.1e-131	98.3
WP_000194763.1\|4988807_4989551_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.4e-150	99.2
WP_126303346.1\|4989496_4990129_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.2e-97	90.5
WP_000514845.1\|4990364_4993841_+	host specificity protein J	Q6H9T2	Enterobacteria_phage	0.0e+00	96.1
WP_001216290.1\|4993909_4994533_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	1.1e-68	60.4
WP_000279033.1\|4994597_4995911_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZD68	Stx2-converting_phage	3.3e-78	99.1
WP_001023417.1\|4995912_4996182_+\|tail	phage tail fiber C-terminal domain-containing protein	B6DZB8	Enterobacteria_phage	2.4e-44	98.9
WP_000442132.1\|4996342_4996765_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	5.7e-72	97.0
WP_001345294.1\|4996894_4997953_-	T3SS effector EspW	NA	NA	NA	NA
WP_001117798.1\|4998031_4998682_-	T3SS effector NleG family protein	B6DZZ5	Stx2-converting_phage	2.8e-25	37.2
WP_001132154.1\|4998864_4999455_+	T3SS effector guanine nucleotide exchange factor EspM2	NA	NA	NA	NA
WP_001217542.1\|4999956_5000205_-	DinI-like family protein	A5LH55	Enterobacteria_phage	3.1e-38	98.8
WP_000543817.1\|5001453_5002491_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

DBSCAN-SWA_18

5117127 : 5180988

Vibrio_phage(12.5%)

tRNA,transposase,protease,integrase

attL 5158855:5158884|attR 5184355:5184384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000811566.1\|5117127_5117403_+\|protease	protease activator YjfN	NA	NA	NA	NA
WP_001299838.1\|5117519_5119145_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000943991.1\|5119228_5120392_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	4.9e-81	43.8
WP_000101670.1\|5120394_5121033_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000547760.1\|5121042_5121441_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000012546.1\|5121447_5122107_-	YjfK family protein	NA	NA	NA	NA
WP_000511955.1\|5122157_5122856_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_000220137.1\|5122874_5123276_-	DUF2170 family protein	NA	NA	NA	NA
WP_001293281.1\|5123402_5124134_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000076318.1\|5124313_5126674_-	ribonuclease R	Q0GXV6	Lactococcus_phage	6.2e-67	33.1
WP_001177639.1\|5126712_5127138_-	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000527955.1\|5127342_5128641_-	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001089295.1\|5128744_5128942_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_001232412.1\|5129023_5130028_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_000312488.1\|5130030_5131290_-\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_000460360.1\|5131375_5132656_-	GTPase HflX	NA	NA	NA	NA
WP_001051883.1\|5132732_5133041_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_001280349.1\|5133126_5134077_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001122520.1\|5134069_5135917_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-60	41.3
WP_000990321.1\|5135926_5137264_-	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	8.8e-18	31.0
WP_000981977.1\|5137282_5137744_-\|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	NA	NA	NA	NA
WP_001307537.1\|5137715_5139263_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_001294195.1\|5139261_5140401_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_010723271.1\|5140383_5140437_-	hypothetical protein	NA	NA	NA	NA
WP_001295188.1\|5141300_5141846_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-28	40.4
WP_000041970.1\|5141940_5142993_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_000934920.1\|5143089_5144058_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_001236850.1\|5144079_5147403_+	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_001276180.1\|5147431_5147746_-	YjeO family protein	NA	NA	NA	NA
WP_000342867.1\|5147742_5148057_-	hypothetical protein	NA	NA	NA	NA
WP_001346081.1\|5148108_5149611_-	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_000004771.1\|5149829_5150807_-	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	6.8e-28	28.2
WP_001192991.1\|5151131_5152940_+	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000829498.1\|5152932_5153667_+	fumarate reductase iron-sulfur protein	NA	NA	NA	NA
WP_000208757.1\|5153677_5154073_+	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_001299198.1\|5154083_5154443_+	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_001299193.1\|5154505_5155639_+	BlaEC family class C beta-lactamase	NA	NA	NA	NA
WP_001238378.1\|5155727_5156261_+	lipocalin Blc	A0A1W6JNX6	Morganella_phage	2.7e-47	55.0
WP_000118482.1\|5156257_5156575_-	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_000239596.1\|5156756_5156903_-	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000977757.1\|5157013_5157139_-	lipoprotein antitoxin entericidin A	NA	NA	NA	NA
WP_000257278.1\|5157190_5157757_-	elongation factor P	NA	NA	NA	NA
WP_000940530.1\|5157798_5158827_+	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
5158855:5158884	attL	NA	NA	NA	NA
WP_001008073.1\|5159216_5160086_+	hypothetical protein	NA	NA	NA	NA
WP_000558209.1\|5160289_5160643_-	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_000729116.1\|5160780_5162436_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.3e-190	68.9
WP_001026276.1\|5162479_5162773_-	co-chaperone GroES	K4F9I2	Cronobacter_phage	9.2e-13	45.4
WP_000015837.1\|5163048_5164305_+	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_001267448.1\|5164320_5164797_-	membrane protein FxsA	NA	NA	NA	NA
WP_000069437.1\|5165133_5166570_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_000961959.1\|5166687_5167989_+	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA
WP_000883400.1\|5168104_5168443_+	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_000068905.1\|5168418_5170116_+	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_001188520.1\|5170152_5170728_+	transcriptional regulator	NA	NA	NA	NA
WP_001218841.1\|5171107_5172373_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.7e-77	38.3
WP_000631719.1\|5174034_5174382_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.0e-42	72.0
WP_000603950.1\|5176703_5177252_-	Ail/Lom family outer membrane beta-barrel protein	Q9LA63	Enterobacterial_phage	1.3e-15	32.4
WP_001453071.1\|5177824_5177998_-	hypothetical protein	NA	NA	NA	NA
WP_162829202.1\|5179390_5180604_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_001254202.1\|5180697_5180988_+\|transposase	transposase	A0A1W6JP07	Morganella_phage	7.2e-42	99.0
5184355:5184384	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_013370

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013370_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013370_1

54558-54665

Orphan

Consensus_repeat	Method
ACAGTCAACATAAAATCGCGTACAGTCAATGTT	PILER-CR

2 spacers

The CRISPR arrays of NC_013370_1

>merge|NC_013370|1|54558-54665|PILER-CR
TAAAATCGCGTACAGTCAATGTTTCTGTCGCATATAGTCAACAATAAATCGCGTGCAGTCAACAATAAATCGTGCACAGTCAACATAAAATCGCGTATAGTCAATGTT

>NC_013370|1|1|54558-54665|PILER-CR
TAAAATCGCGTACAGTCAATGTTTCTGTCGCAT	ATAGTCAACA
ATAAATCGCGTGCAGTCAACAATAAATCGTGCA	CAGTCAACATAAA
ATCGCGTATAGTCAATGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013370.1\|WP_001177859.1\|57098_57383_+\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_000751806.1\|63328_64156_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366488
NC_013370.1\|WP_000007769.1\|55385_55808_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_000035299.1\|45089_45671_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_000888906.1\|53597_54482_-\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	unknown
NC_013370.1\|WP_162467002.1\|61377_61635_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_001313475.1\|44296_44452_+\|type-I-toxin-antitoxin-system-toxin-HokD	unknown	unknown	gnl\|CDD\|366840
NC_013370.1\|WP_000085155.1\|46531_48121_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_000660980.1\|58277_61319_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NC_013370.1\|WP_001369095.1\|43869_44115_+\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_000472523.1\|57375_58281_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NC_013370.1\|WP_000509943.1\|44568_45078_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_000041774.1\|45706_46522_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_001276599.1\|64539_65904_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193
NC_013370.1\|WP_000890203.1\|55847_56636_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_001281116.1\|54815_55208_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_001285362.1\|51130_52327_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|376033
NC_013370.1\|WP_000038868.1\|50112_51114_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|370113
NC_013370.1\|WP_000067713.1\|48181_49888_-\|hypothetical-protein	unknown	unknown	unknown
NC_013370.1\|WP_000336812.1\|55219_55360_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013370.1\|WP_000751806.1\|63328_64156_+\|hypothetical-protein	gnl\|CDD\|366488	pfam01145, Band_7, SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	2.74479e-26
NC_013370.1\|WP_000472523.1\|57375_58281_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	4.51676e-134
NC_013370.1\|WP_001276599.1\|64539_65904_+\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0
NC_013370.1\|WP_001313475.1\|44296_44452_+\|type-I-toxin-antitoxin-system-toxin-HokD	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	5.49467e-12
NC_013370.1\|WP_001285362.1\|51130_52327_-\|AAA-family-ATPase	gnl\|CDD\|376033	pfam18607, HTH_54, ParA helix turn helix domain. The accurate segregation of DNA is essential for the faithful inheritance of genetic information. Segregation of the prototypical P1 plasmid par system requires two proteins, ParA and ParB, and a centromere. When bound to ATP, ParA mediates segregation by interacting with centromere-bound ParB, but when bound to ADP, ParA fulfills a different function: DNA-binding transcription autoregulation. ParA consists of an elongated N-terminal alpha-helix which mediates dimerization, a winged-HTH and a Walker-box containing C-domain. This entry describes the N-terminal alpha helix domain combined with the winged HTH region.	3.86485e-53
NC_013370.1\|WP_000038868.1\|50112_51114_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|370113	pfam08775, ParB, ParB family. ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognizes A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site.	7.53921e-44
NC_013370.1\|WP_000660980.1\|58277_61319_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	1.35767e-75

>NC_013370.1|WP_000888906.1|53597_54482_-|RepB-family-plasmid-replication-initiator-protein
MLEENKGFLSVEEVAGNTGEIHSLKPNNNSTIQPIALLRLGVFVPTLKSTNVALRRGSSVTTNTTNATEELSSLKIVEQEGYEGIEIHGPRLDMDTDFKVWVGITSALFDYAPDDDGIITLPFSEFADRCGYPRKRLSKAFRKSIDDSLTRIQQTVVKFRFPAAKGHLNNINVNLLAYSSLNTELDVIEIQPQKQLSELYYVDYKRILKLKMLDKLGRKETAKVLYTFFEALPANPAPVSIERLRARLNLKSSVSVQNSVIRKAMKDLEAIEYLKFSEIKNGRKIGFQIHKRNP
>NC_013370.1|WP_001285362.1|51130_52327_-|AAA-family-ATPase
MSDSSQLHKVAQRANRMLNVLTEQVQLQKDELHANEFYQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFGGDMLDVVLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIRSN
>NC_013370.1|WP_000038868.1|50112_51114_-|ParB/RepB/Spo0J-family-partition-protein
MSKKNRPTIGRTLNPSILSGFDSSSASGDRVEQVFKLSTGRQATFIEEVIPPNQVESDTFVDQHNNGRDQASLTPKSLKSIRSTIKHQQFYPAIGVRRGTGKIEILDGSRRRASAILENVGLRVLVTDQEISVQEAQNLAKDVQTALQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEMGNKNLEFDQLIQNISPEINDILSIEEMAEDEVKNKILRLITKEASLLTDKGSKDKSVVTELWKFEDKDRFARKRVKGRAFSYEFNRLSKELQEELDRMIGHILRKSLDKKPKP
>NC_013370.1|WP_000067713.1|48181_49888_-|hypothetical-protein
MSNLREYQNRIADIAKRSKAVLGWASTAQFGTDNQFIKDDAARAASILEAARKDPVFAGISDNATAQIATAWASALADYAAAHKSMPRPEILASCHQTLENCLIESTRNSMDATNKAMLESVAAEMMSVSDGVMRLPLFLAMILPVQLGAATADACTFIPVTRDQSDIYEVFNVAGSSFGSYAAGDVLDMQSVGVYSQLRRRYVLVASSDGTSKTATFKMEDFEGQNVPIRKGRTNIYVNRIKSVVDNGSGSLLHSFTNAAGEQITVTCSLNYNIGQIALSFSKAPDKGTEIAIETEINIEAAPELIPLINHEMKKYTLFPSQFVIAAEHTVQAAYEAQREFGLDLGSLQFRTLKEYLSHEQDMLRLRIMIWRTLATDTFDIALPVNQSFNVWATIIRGKFQTVYRDIIERVKSSGAMGMFAGADAASFFKQLPKDFFQPAEDYIQTPYVHYIGTLFGNVKVYEVPAGICKNLTTENIQFSSMDVLCYVRDENPGKAGFVTGDAVPAIPFQHPTTPALVNRTTLWGSAINDMHPRNGADYFTRVTLTMAKKGGLNFISGDTIDAGDSE
>NC_013370.1|WP_000085155.1|46531_48121_-|hypothetical-protein
MSQYSIQQSLGNASGVAVSPINADATLSTGVALNSSLWAGIGVFARGKPFTVLAVTESNYKDVLGEPLKPSSGSQFEPIRHVYEAIQQTSGYVVRAVPDDAKFPIIMFDESGEPAYSALPYGSEIELDSGEAFAIYVDDGDPCISPTRELTIETATADSAGNERFLLKLTQTTSLGVVTTLETHTVSLAEEAKDDMGRLCYLPTALEARSKYLRAVVNEELISTAKVTNKKSLAFTGGTNGDQSKISTAAYLRAVKVLNNAPYMYTAVLGLGCYDNAAITALGNICSDRLIDGFFDVKPTLTYTEALSAVEDTGLLGTDYVSCAVYHYPFSCKDKWTQSRVVFGLSGVAYAAKARGVKKNSDVGGWHYSPAGEERAVIARASIQPLYPEDTPDEEAMVKGRLNKVSVGTSGQMIIDDALTCCTQDNYLHFQHVPSLMNAISRFFVQLARQMKHSPDGITAAGLTKGMTKLLDRFVASGALVAPRDPDADGTEPYVLKVTQAEFDKWEVVWACCPTGVARRIQGVPLLIK
>NC_013370.1|WP_000041774.1|45706_46522_-|hypothetical-protein
MSKNFFQSGAFLGNGLSRFALNSDPVQLMESARASAEQPTDPVINNNPEPAAQTNDNVPSAPAPEQILEGKDGKEWTVEQAHQMILEAANRSAMQNALSDAADAVFAWADSGDLTFDSLDGFVQAIAGISDDDDSEVTEEQDDAYNEAWANVADFLAACGVDDDLIEALADDEDDDAAADVGASIAGLDSDDRDELEAAFVVAGTSDEMLTEAFKKVVRNGEIKLIRKRLRKKRLTAAQKSALKKARRKAQTGAAKLARKKSMKLRRKRLG
>NC_013370.1|WP_000035299.1|45089_45671_-|hypothetical-protein
MAPIPYGVYSQADGVSPFLKVTLTNSQYQVTGYISQGAAMNMAQNWEAPFTGMSMGSVAGAFSGFAQVGTETTSVARWNSLMVWEGGTPPTFTLPVTFIALFDPFTEVSGAIAALSAMISPELKDASIGGRIPERVTLNIGRQINIIDVAIQDISFDLDAPRDSNGHFLKNTVNLQLTGSSIYNSSDIVRAFQ
>NC_013370.1|WP_000509943.1|44568_45078_-|hypothetical-protein
MGHNNTKGNRKFIKGRYTANAAKGERLVSSEFQLTVAGHEDISVLVRTSQIPEMTREDVEDYGPNGVKFNQHGPIRNSGEIQVQCVETIEGDILQFIKDRIAAKDYVDITMAATPESKSSGVNAVTKAATTIEMLDCKIYSDAIDFSTEDVTAAVRPSLRIVYNWIEWD
>NC_013370.1|WP_001313475.1|44296_44452_+|type-I-toxin-antitoxin-system-toxin-HokD
MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVTVFTAYESER
>NC_013370.1|WP_001369095.1|43869_44115_+|hypothetical-protein
MQSDFLQLAIAFAGYVCIGFCVYMISRKMLVDIDRKEQAEEILVWIFFGAVWPLGIMFAATFLLMWIFTLPGDFYRKKARH
>NC_013370.1|WP_001281116.1|54815_55208_-|hypothetical-protein
MSDKVTVKQTINKATSIYKIEHITVGKPGSEQYRHAFELADQLGLKHPDCIEHVFPTYADEQCTHVLTEEDFFSTEEREGVDRCIGVICSSVSYELFPNVHENGGIGYQFLYEGDELKCYEHGLLIESVE
>NC_013370.1|WP_000336812.1|55219_55360_-|hypothetical-protein
MCRMPEFSSEYFDDLPAYILDTETMLMGINRKNRNVNDYNRAISGN
>NC_013370.1|WP_000007769.1|55385_55808_-|hypothetical-protein
MSFFSTLKTALSLKEKLAATGVLVLICALVGAGFAWERHQLKQAMEKIGSLDQAVKERDKSIMDLNQTIETMNKAEQHFHSQEVKNESEQAKYADRQMERKAEVQKQLVAAGNVRQRIPADTQRLLRESISEFNADADKG
>NC_013370.1|WP_000890203.1|55847_56636_-|hypothetical-protein
MLEKDYQLSAYKKLAAAGGMKTPGAITSARNSANTAKLLAEELTGLILDTIVYPDTITSYVSTIRTTTTGLTNIGELATKHADLLAGYADLSMLLQLDIGWDVYCRANEREVSELPISIAIGDVNITKSLEDAVNALNTSSLVAAMGEINQALNTGSESSSGSGSGGGTATPPPALTEEQIESLKVATEQFGVVFNQTTAPTTALQQQYERANESANVAITAYNHAIGTALAEASANKASTASAVAALVPDSVLDELNKAAR
>NC_013370.1|WP_001177859.1|57098_57383_+|hypothetical-protein
MQMELISRKEFDSRVTSGELDNLQAIKVKEGFCLIGNQSGINRVFMLRRTDLKPFVWKNEIGPSSYAQTRGCHNLAFFYKDELSVVDIQGLQHV
>NC_013370.1|WP_000472523.1|57375_58281_+|recombination-associated-protein-RdgC
MFKHWKNITIYKLSREADLTDLEDKKKMILFTPCGSQDMAKFGFVSPFGDNSEVIAMHGNGFILVEAKRETKILPPPVIQRAIQEKIEKLEQEQARKLKKTEKDSLKDEVLHSLLPRAFSKFSVIQAIYDGSTKRIYINASARQAEDMLALMRKSLGSLPAVPLSVENPIELTLTDWVRDGSAPQGFQMGDAAELKAVLEDGGIARVKKQDLGSDEISTHLEAGKLVTKLALDWQNRIKFTLDHNFSLTSVKFADELLEQNSDIDSEDVAQRLDADFFLLTSEISCLVDALVNALGGEAKQ
>NC_013370.1|WP_000660980.1|58277_61319_+|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MKELCYGSVCSGIEAASIAWEPLGMRPAWFAEIEPFPSAVLALRWPHVANLGDMKKLAKKVLAGEIESPDVLVGGTPCFTAGHMVLCKNGYKPIENVCPGDYVVSHLGRLQQVKRVGSKIANTGLLNAVGQPLGIRTTNDHPFLAVRWKAQNTRKNGTYFKRELLSEPEWRAACDMPGYQWCALTNFNIAFPDICSRFLSEEQAMYLAGAYVGDGYIRRWRGKSKKAVVFGINCQKLRKFHCRIPENIFSVASEIRGSIKVTLNDTCYANWLNEHFGELSHAKRIPAWVMSHPLRHVFLQGYLDTDGTPSGKAGFRINSVSSALAWGVAGLSQTCGYVSSVSFIEVEPKKVIEDRVVNQRNYYQVTICPQKLSRKSRLAHGMLLRTVKEFKSVGLDTVYNIEVEGDHSYILNGAVVHNCQAFSIAGLRGGLDDERGALTLKYVELANAIDDKRAESFLKPAVIVWENVPGVLSSADNAFGCFLAGLAGEDVPFEPGDRPESGKSNAFWRWDGKTGCHVPKWPQCGCIYGPQRKVAWRILDAQYFGVAQRRRRVFVVASARTDLDPATVLFEFEGVRRNIAPSRGEGKETTRYTSNIAIRTCDDTNIIAMAHGQGGAEIKTDNSAPTLTCNHEAPIVLLGDGRMRRLTPVECERLQGFPDWHTLIPTEKRKKVNSDELAYLHNHYPDLSEEEAAMLAADGPRYKAIGNSMAIPVMRWIGDRITKAVCRQKEGSETKERKVKPAAEFERSIFKWAGGKFGVLEQIFRYLPEGKRLIEPFVGGGAVFMNAGYQENLLNDVNADLINFYKTLQREAHSLITLAHRFFQDYNTQEGYLAVRNAFNKQVYDDLHRAAAFLFLNRHCFNGLTRYNQAGEFNVGYGKYKTPYFPLQEMEAFLGAEGRSEFVCGDFAAVIEAAGEGDVIFCDPPYEPLPNTEGFTNYSGHDFKFEEQKRLVSLLTDAHRRGAKVLITNSGAPNIRELYHDSGFRVEPLFARRSVSCKGDTRGVAHDVLGILL
>NC_013370.1|WP_162467002.1|61377_61635_-|hypothetical-protein
MASGFLGRYHHQIIVCIYFNGQFLNRRKVANHDENPEKNAHPKMGKLDARNALRRCHLGAWSTWQLGGLSGRTRPSHAYRRACRG
>NC_013370.1|WP_000751806.1|63328_64156_+|hypothetical-protein
MKKTLISAAIILGSLCLTGCDRVEPGNVGIKVNKLGDDKGIGEVVGVGRYWTGLNTEVYIFPTFKQMKTYDEPFSFQMSDGTTIGYHIGVAYKVDPAKVTTVFQTYRKGVDDITDTDLRQKVADALNRLASKMTTDKFIDGGKSELLDAALKDIQEEMTPIGIQVMSLSYVGKPEYPPTVIDSINAKVTANQKTLQREQEVKQREAEANMLRAEAAGQADAIRTKAQAEADAIRLRGEALRQNPGVMDLEAINKWNGTLPQYMTSNTAVPFVPVK
>NC_013370.1|WP_001276599.1|64539_65904_+|replicative-DNA-helicase
MSASPLESMPNSLSAEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALEQNGKLERAGGFAYLAEMSKNTPSAANICAYADIVRERAVVREMISVANEIAEAGYAQDGRGSNELLDMAERRVFEIAEKRQKSGSGPKDIASILDATVSRIEELFQRPHDGVTGLDTGFTDLNKKTAGLQASDLIIVAARPSMGKTTFAMNLVENAAVRNDKPVLVFSLEMPSHQLMMRSLASLARVDQTRIRTGQLNDEDWARVSGAMGILLDKQNIFIDDSSALTPTELRSRARRVYKENGGLSMIMIDYLQLMRVPELQDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGAIEQDADLIMFLYRDEVYHPDSEMKGIAEVIIGKQRNGPIGTVRLAFNGQYSRFDNYAGADWQEDY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013370_1	1.2\|54634\|13\|NC_013370\|PILER-CR	54634-54646	13	NC_013366.1	62553-62565	1	0.923

1. spacer 1.2|54634|13|NC_013370|PILER-CR matches to position: 62553-62565, mismatch: 1, identity: 0.923

caataaatcgtgc	CRISPR spacer
caataaaccgtgc	Protospacer
*******.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

206 : 97499

110

Escherichia_phage(67.31%)

integrase,terminase,head,transposase,tail

attL 785:797|attR 19883:19895

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000542341.1\|206_428_+	hypothetical protein	Q5QBN7	Enterobacteria_phage	1.0e-32	94.5
WP_000481733.1\|447_843_+	hypothetical protein	NA	NA	NA	NA
785:797	attL	NA	NA	NA	NA
WP_000185182.1\|839_1871_+\|integrase	site-specific integrase	A0A077SLE7	Escherichia_phage	3.2e-193	99.1
WP_001224238.1\|1921_2233_+	hypothetical protein	A0A077SK03	Escherichia_phage	1.8e-46	99.0
WP_001260622.1\|2471_3587_-	phage antirepressor Ant	A0A077SLR9	Escherichia_phage	1.3e-192	93.3
WP_012817933.1\|3583_3805_-	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	6.2e-30	80.8
WP_024200488.1\|4398_5040_+	hypothetical protein	A0A077SK30	Escherichia_phage	9.7e-116	100.0
WP_000747846.1\|5079_5328_-	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_000224043.1\|5324_5765_-	hypothetical protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
WP_001038178.1\|5798_12566_-	N-6 DNA methylase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.4
WP_000774708.1\|12641_14351_+	hypothetical protein	Q1MVN6	Enterobacteria_phage	0.0e+00	99.6
WP_000132943.1\|14343_15363_+\|head	head processing protein	Q1MVN5	Enterobacteria_phage	3.9e-183	100.0
WP_001038142.1\|15407_15662_-	hypothetical protein	Q71TF4	Escherichia_phage	3.6e-37	100.0
WP_000676956.1\|15654_16212_-	lysozyme	Q1MVN3	Enterobacteria_phage	4.2e-107	100.0
WP_000068866.1\|16381_16870_+	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	8.5e-88	99.4
WP_000126784.1\|17067_17856_+	hypothetical protein	A0A1B0VDP8	Salmonella_phage	1.3e-141	97.7
WP_000413423.1\|18102_18390_+	hypothetical protein	NA	NA	NA	NA
WP_001165934.1\|18593_18914_-	hypothetical protein	A0A077SLG5	Escherichia_phage	1.0e-41	100.0
WP_000058793.1\|18903_21891_-	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	98.8
19883:19895	attR	NA	NA	NA	NA
WP_000175486.1\|21903_22269_-	hypothetical protein	A0A077SK35	Escherichia_phage	7.9e-46	100.0
WP_000434672.1\|22265_24185_-	hypothetical protein	A0A1B0V7H1	Salmonella_phage	0.0e+00	95.5
WP_001345482.1\|24186_24789_-	hypothetical protein	Q1MVM6	Enterobacteria_phage	5.4e-100	100.0
WP_000580770.1\|24775_25219_-	hypothetical protein	A0A077SK09	Escherichia_phage	2.9e-82	99.3
WP_001312286.1\|25215_25332_-	hypothetical protein	Q37876	Escherichia_phage	8.0e-13	100.0
WP_077625665.1\|25312_25810_+\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	1.4e-24	63.1
WP_001369353.1\|26300_26873_+	serine acetyltransferase	NA	NA	NA	NA
WP_000144025.1\|26916_27495_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.9e-95	88.5
WP_001000790.1\|27494_30344_-\|tail	tail fiber protein	Q71TP5	Escherichia_phage	0.0e+00	93.7
WP_001286326.1\|30355_30790_-	hypothetical protein	A0A077SLL3	Escherichia_phage	3.3e-75	100.0
WP_001189831.1\|30868_31705_-	hypothetical protein	A0A077SLH5	Escherichia_phage	1.7e-152	98.9
WP_000047923.1\|31704_33138_-	bleomycin hydrolase	A0A1B0VAD6	Salmonella_phage	3.7e-272	100.0
WP_000002800.1\|33134_33491_-	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
WP_000440162.1\|33490_36883_-	lytic transglycosylase domain-containing protein	Q1MVL3	Enterobacteria_phage	0.0e+00	98.7
WP_000926353.1\|36964_37846_-	hypothetical protein	Q71TC9	Escherichia_phage	2.2e-174	100.0
WP_000523978.1\|37860_38472_-	hypothetical protein	A0A077SLH8	Escherichia_phage	5.8e-110	100.0
WP_000188917.1\|38482_39049_-	hypothetical protein	Q1MVL0	Enterobacteria_phage	4.3e-99	98.9
WP_012817937.1\|39107_39584_-	hypothetical protein	NA	NA	NA	NA
WP_000540695.1\|39648_40323_-	hypothetical protein	Q71TC4	Escherichia_phage	2.0e-18	92.0
WP_000245710.1\|40723_40945_+	host cell division inhibitor Icd-like protein	Q38414	Enterobacteria_phage	5.6e-39	100.0
WP_000743160.1\|40941_41979_+	phage antirepressor KilAC domain-containing protein	Q71TN2	Escherichia_phage	1.8e-175	93.9
WP_001187870.1\|42143_42944_+	phage antirepressor KilAC domain-containing protein	Q1MVK4	Enterobacteria_phage	2.1e-147	99.2
WP_001369093.1\|42973_43819_+	hypothetical protein	Q1MVK3	Enterobacteria_phage	2.1e-150	98.2
WP_001369095.1\|43869_44115_+	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.5e-13	45.0
WP_001313475.1\|44296_44452_+	type I toxin-antitoxin system toxin HokD	A0A1I9LJU7	Stx_converting_phage	1.0e-15	92.2
WP_000509943.1\|44568_45078_-	hypothetical protein	Q1MVJ9	Enterobacteria_phage	1.1e-90	99.4
WP_000035299.1\|45089_45671_-	hypothetical protein	Q1MVJ8	Enterobacteria_phage	2.1e-101	96.9
WP_000041774.1\|45706_46522_-	hypothetical protein	A0A1B0V835	Salmonella_phage	9.8e-113	99.3
WP_000085155.1\|46531_48121_-	hypothetical protein	A0A1B0V7E4	Salmonella_phage	6.2e-305	99.2
WP_000067713.1\|48181_49888_-	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	99.8
WP_000038868.1\|50112_51114_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	3.7e-178	99.7
WP_001285362.1\|51130_52327_-	AAA family ATPase	A0A077SL49	Escherichia_phage	1.6e-225	100.0
WP_000888906.1\|53597_54482_-	RepB family plasmid replication initiator protein	A0A1B0VDL5	Salmonella_phage	1.4e-160	99.7
WP_001281116.1\|54815_55208_-	hypothetical protein	A0A077SLJ1	Escherichia_phage	2.0e-71	99.2
WP_000336812.1\|55219_55360_-	hypothetical protein	Q71TL6	Escherichia_phage	6.3e-20	100.0
WP_000007769.1\|55385_55808_-	hypothetical protein	A0A1B0VCB0	Salmonella_phage	2.7e-58	100.0
WP_000890203.1\|55847_56636_-	hypothetical protein	A0A1B0V830	Salmonella_phage	9.2e-108	89.3
WP_001177859.1\|57098_57383_+	hypothetical protein	Q71TA2	Escherichia_phage	1.7e-48	98.9
WP_000472523.1\|57375_58281_+	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	5.9e-159	99.3
WP_000660980.1\|58277_61319_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	87.2
WP_162467002.1\|61377_61635_-	hypothetical protein	A0A1B0V7P4	Salmonella_phage	7.8e-16	84.8
WP_000751806.1\|63328_64156_+	hypothetical protein	A0A077SLJ6	Escherichia_phage	2.8e-131	99.6
WP_001276599.1\|64539_65904_+	replicative DNA helicase	A0A077SK18	Escherichia_phage	2.1e-253	100.0
WP_001198654.1\|65903_66902_+	hypothetical protein	A0A077SL52	Escherichia_phage	3.7e-194	99.1
WP_000535209.1\|66948_67581_-	hypothetical protein	Q1MVH8	Enterobacteria_phage	9.0e-90	100.0
WP_000212018.1\|67573_68590_-	hypothetical protein	A0A077SLQ1	Escherichia_phage	3.5e-192	100.0
WP_000602707.1\|68591_69377_-	hypothetical protein	Q71T90	Escherichia_phage	1.2e-139	96.5
WP_000896792.1\|69363_70092_-	hypothetical protein	A0A077SK19	Escherichia_phage	1.5e-136	98.8
WP_001141913.1\|70095_71313_-	hypothetical protein	A0A077SL53	Escherichia_phage	3.2e-224	99.8
WP_000235786.1\|71322_71700_-	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_000840933.1\|71846_72092_+	hypothetical protein	A0A1B0VDU5	Salmonella_phage	3.3e-40	98.8
WP_000943615.1\|72094_72673_+	VRR-NUC domain-containing protein	Q71T85	Escherichia_phage	3.4e-99	92.7
WP_000096174.1\|72739_72895_+	hypothetical protein	Q71TJ4	Escherichia_phage	7.0e-20	100.0
WP_012817939.1\|72836_73499_+	hypothetical protein	Q71T83	Escherichia_phage	4.5e-124	100.0
WP_000484113.1\|73396_74023_+	hypothetical protein	A0A077SK52	Escherichia_phage	3.1e-122	99.0
WP_024200490.1\|74019_74697_+	metallophosphoesterase	Q71TJ1	Escherichia_phage	5.1e-131	96.9
WP_162829202.1\|74952_76165_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000107685.1\|77009_78272_+	hypothetical protein	A0A1B0V7L1	Salmonella_phage	4.0e-230	97.6
WP_000021752.1\|78345_78852_+	hypothetical protein	Q71T77	Escherichia_phage	5.0e-91	97.0
WP_000675632.1\|79046_79775_+	hypothetical protein	Q71T76	Escherichia_phage	9.3e-139	95.4
WP_000158003.1\|79858_80062_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	6.8e-31	94.0
WP_000476202.1\|80054_80294_+	hypothetical protein	S5MQM0	Escherichia_phage	2.0e-34	92.4
WP_001290013.1\|80290_80992_+	ead/Ea22-like family protein	A0A0U2QW67	Escherichia_phage	9.2e-51	53.9
WP_001018057.1\|80988_81279_+	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	1.2e-36	82.3
WP_000403776.1\|81945_82305_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	8.0e-59	99.2
WP_000935430.1\|82350_82563_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	2.2e-32	88.6
WP_000951706.1\|82818_83028_+	hypothetical protein	A0A077SL56	Escherichia_phage	4.2e-36	100.0
WP_000208030.1\|83024_83867_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	5.8e-100	67.2
WP_000969528.1\|83863_84124_+	hypothetical protein	A0A1B1W289	Salmonella_phage	7.8e-40	96.5
WP_000002123.1\|84123_84405_+	ASCH domain-containing protein	A0A077SLL0	Escherichia_phage	1.4e-47	97.8
WP_000267997.1\|84428_84722_+	hypothetical protein	A0A077SK23	Escherichia_phage	1.6e-49	97.9
WP_000988652.1\|84728_85103_+	hypothetical protein	A0A077SL57	Escherichia_phage	1.2e-68	100.0
WP_000057456.1\|85084_85774_+	hypothetical protein	A0A077SK55	Escherichia_phage	8.8e-123	97.8
WP_001142389.1\|85757_86042_+	hypothetical protein	NA	NA	NA	NA
WP_000988220.1\|86041_86347_+	hypothetical protein	NA	NA	NA	NA
WP_000159954.1\|86343_86868_+	toprim domain-containing protein	A0A2D2W4T4	Escherichia_phage	4.9e-33	48.5
WP_001048304.1\|86928_87144_-	hypothetical protein	Q1MVE8	Enterobacteria_phage	4.2e-31	97.2
WP_001133672.1\|87174_87510_-	hypothetical protein	Q71TH9	Escherichia_phage	6.5e-63	98.2
WP_000506726.1\|87684_88074_+	DNA repair protein	Q1MVE7	Enterobacteria_phage	1.4e-69	99.2
WP_001190712.1\|88146_88368_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216034.1\|88367_88748_+	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_000113018.1\|88752_88932_+	hypothetical protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
WP_000648823.1\|88959_90003_+	DUF968 domain-containing protein	A0A077SLM1	Escherichia_phage	2.2e-205	98.8
WP_001448129.1\|90091_90544_+	hypothetical protein	Q71T63	Escherichia_phage	6.7e-79	99.3
WP_000219603.1\|90629_91823_+\|terminase	terminase	A0A077SL59	Escherichia_phage	5.0e-174	95.7
WP_000124153.1\|91822_93307_+	hypothetical protein	Q71T61	Escherichia_phage	2.1e-291	99.8
WP_000908421.1\|93390_93867_+	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	3.4e-25	80.3
WP_162829202.1\|93912_95126_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000568543.1\|95206_96295_+	phage antirepressor Ant	A0A077SLR9	Escherichia_phage	8.6e-173	87.9
WP_000611655.1\|96327_97179_-	hypothetical protein	A0A077SLM8	Escherichia_phage	2.3e-157	99.3
WP_000874157.1\|97289_97499_-	hypothetical protein	Q5XLQ8	Enterobacteria_phage	3.1e-31	98.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_013365

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013365_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013365_1

192066-192223

Orphan

Consensus_repeat	Method
CCGTACCCGGTATAGTGGAT	PILER-CR

2 spacers

The CRISPR arrays of NC_013365_1

>merge|NC_013365|1|192066-192223|PILER-CR
CCGTACCCGGTATAGTGGATGAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAGGTTTACCCGGTATAGTGGATCGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAACCGTACCCGGTATAGTGGAT

>NC_013365|1|1|192066-192223|PILER-CR
CCGTACCCGGTATAGTGGAT	GAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAG
GTTTACCCGGTATAGTGGAT	CGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAA
CCGTACCCGGTATAGTGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013365.1\|WP_001395483.1\|184581_184845_+\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_001226764.1\|193578_196035_-\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372704
NC_013365.1\|WP_000704115.1\|192412_192928_-\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_001277090.1\|196671_198348_-\|DUF4942-domain-containing-protein	unknown	unknown	gnl\|CDD\|372683
NC_013365.1\|WP_001281654.1\|198611_199769_-\|DNA-binding-protein	unknown	unknown	unknown
NC_013365.1\|WP_000666932.1\|186316_188701_-\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372704
NC_013365.1\|WP_001447605.1\|188951_189554_+\|DUF4165-domain-containing-protein	unknown	unknown	gnl\|CDD\|372706
NC_013365.1\|WP_001178650.1\|200967_201789_-\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_000262469.1\|189957_190554_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372704
NC_013365.1\|WP_001289315.1\|185809_186229_-\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_032339737.1\|189565_189802_+\|Ig-like-domain-repeat-protein	unknown	unknown	gnl\|CDD\|371986
NC_013365.1\|WP_000047134.1\|196480_196657_-\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_001395482.1\|184139_184481_+\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_001015069.1\|202993_204070_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272946
NC_013365.1\|WP_000097746.1\|190945_191827_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|374546
NC_013365.1\|WP_001225593.1\|200128_200953_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|273146
NC_013365.1\|WP_000357614.1\|202775_202976_-\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_000178072.1\|185072_185777_+\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_001096299.1\|183174_183951_+\|hypothetical-protein	unknown	unknown	unknown
NC_013365.1\|WP_000682872.1\|202071_202779_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199908

Protein	Function_ID	Function_description	E-value
NC_013365.1\|WP_001277090.1\|196671_198348_-\|DUF4942-domain-containing-protein	gnl\|CDD\|372683	pfam13708, DUF4942, Domain of unknown function (DUF4942). The function of this family is not known.	2.85133e-16
NC_013365.1\|WP_001226764.1\|193578_196035_-\|DUF4165-domain-containing-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	9.32876e-65
NC_013365.1\|WP_000682872.1\|202071_202779_-\|hypothetical-protein	gnl\|CDD\|199908	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40. Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.	0.000379412
NC_013365.1\|WP_001015069.1\|202993_204070_-\|hypothetical-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	0.00163255
NC_013365.1\|WP_000097746.1\|190945_191827_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|374546	pfam16441, DUF5038, Domain of unknown function (DUF5038). This family consists of several uncharacterized proteins around 200 residues in length and is mainly found in various Clostridiales species. The function of this family is unknown.	0.000541832
NC_013365.1\|WP_001225593.1\|200128_200953_+\|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	7.14985e-68
NC_013365.1\|WP_001447605.1\|188951_189554_+\|DUF4165-domain-containing-protein	gnl\|CDD\|372706	pfam13752, DUF4165, Domain of unknown function (DUF4165).	3.66424e-39
NC_013365.1\|WP_032339737.1\|189565_189802_+\|Ig-like-domain-repeat-protein	gnl\|CDD\|371986	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	4.38686e-09
NC_013365.1\|WP_000262469.1\|189957_190554_+\|hypothetical-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	1.23519e-43
NC_013365.1\|WP_000666932.1\|186316_188701_-\|DUF4165-domain-containing-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	6.15311e-63

>NC_013365.1|WP_000097746.1|190945_191827_+|RepB-family-plasmid-replication-initiator-protein
MSSNNNKLSLVIEESLKDSGEVIQLFPTLKQTIQPKVLLRLGVFVPTLKSTDKGGRKSHHIDATEPLSRLSIVEGEGYSQIQIYGPRLDMDTDFKSWCGIVYALSNRPLDSEGQLELNFPEFAKFCGFDTKRIDKQLKERFDASLTRIARTNISFIKKIPGTDDQITINMHLVESTYYDSSTGKIIIKPNSKLNTLYRVDGKTRLYLKTLQKLARKESAQALYLYLAELPSTFYRIGFDRLRGRLQLSSHLGNQNATVKKALGQLKEIGFLEYSIDKENGDYVLNILKRNMKP
>NC_013365.1|WP_000262469.1|189957_190554_+|hypothetical-protein
MVYGLENIRIALADNLTTPRITRLQITGGPTADNVELTWSPAGTNVYAPEYPRLFPSFEPSENYALSVTVSDSQSNSKTYTQKFSYLPNNLVQLHNLRTLSVSSALKTSLNEPLAYLSTNVLRKSNGEIAKDVQSATLTVRKDAAFGIKFNGVQAALGESVEVKIDMGLGDNLLVPIYPAENGKVGTSEFMIQIDELK
>NC_013365.1|WP_032339737.1|189565_189802_+|Ig-like-domain-repeat-protein
MYHTYSKNSVKGAGIPDSNLDEDFTAKVVIYDNAGNTRTLPLQLFRYDNYLGGPRSAKLRQRGARGFRISGLFSWDDR
>NC_013365.1|WP_001447605.1|188951_189554_+|DUF4165-domain-containing-protein
MKNQAIALAMAMLGVSVPASAQIYESIFTDTNGIEVHAPSTRLLLNPASPVTLTLIAGLDRYVNVKITSATGTQLLNTTTTRTSVSDRLKAGDGSEFYGKKVTLPVLGEGRSVVQVSILDLNQSVVATYSYNWLVDTTPLSVNALTGNAAYGSTAGSVWKMGLEATGQFDFTSTNVTDVNGIEKGMFYVYRSNGSLFSTT
>NC_013365.1|WP_000666932.1|186316_188701_-|DUF4165-domain-containing-protein
MKFCRRPLIVAVYTALLFPLYSQAQLYNYSYTDTRGTKVNAEPTREYLNPGSAITLNLISGLDRYERVTVTRSSDNVQMFQSVTGLVTVADRITAADGSEYYGKSMTLPVLGEGTFSLKSETLDNKSNVVATTSYSFSIDITPPVLPDPMQWIRAGFQYGSLDIFGDRTATQAISLSNVSDARSGLDKAEWFAIDSSGVRRTVNAQLNALTGVVQALAAVAAGSTVAPVSPAYYTVGFRVYDKAGNWTETSHRSGIDRTVPSYIQHQVRNAKTGVWEDYVPGMTIYENPVKFRFKRLKSDSTNFNGTDFGWIDQITNSDSTYFYTEVTVSYPETYVYYERYTKAGLNNNINYSTLKFTLGSGVPEAPRYLSGQFHFKKGNSWTPTDIVRFTGPDCVDMGRVNVEPRPYVQTATIIGLGSCNVAVGESSCLVSMDYCKTSGKGYSPYQIHMKGTGTYANLGGLQSHFYTYWDMNPPVINSIVSNPLDKTVVMLVTDSDVTNDWTTYMWATNIFNLSLKDTSNKVTTLSPKSVAVLNYQLKQVTFDYSKLPSGKYTATGAATDTYNNTAELKLSSTILHDVTPPVVGIIFEGKPADGSLVKGLENLVITLSDDMTKASLKNITLSGGPTSDKVSVGWYSQGTDKYGLNYPRIFPATDDASSYLLTVVAMDEAGNATTKTSRFRYVPNNLIEFNTIKTLAVGMGLKTSDNQPLAYLRTNSIRKKDGSLITGAQTGTLTVRKDAAFAVSMNGVAVVPGDSKDITIDFGQGDGVLIPIFPATSGNVGESSFMIELPQIQ
>NC_013365.1|WP_001289315.1|185809_186229_-|hypothetical-protein
MSEIAEKPLITRVAPLERIYYCASRAEGLKPDRHEIRMQSQFLLLGVIWLPPALAMAELERLLKGYDADHSRLLENVLETAHQQFLKFCEPQKREGGGVENHVECPRQDDALQCLRFMSTRYALAVDLCAAYVCSRYGR
>NC_013365.1|WP_000178072.1|185072_185777_+|hypothetical-protein
MTMKNTVIPTVTENEMGEVITRHSAYGLVSVSRTSTTGQRLYASDLSHKEVVTMTFSESEQIERDGVIRHRLAEGRRRSPLLQVSLSPAQWATMITSFGMSDGVPCTINSLIRGDYERQPEIGYIESTRERYERQIREAAEREMAKLHEKLEVLRLLAVKGKAGKRELDEAYQSLLSVINNLPVNLAFTNQLIQESMVNIVSHGKAELEATAMGVAARLGMKEMSSLASLEEKK
>NC_013365.1|WP_001395483.1|184581_184845_+|hypothetical-protein
MTNANANDGKTSPVLPTLEQVYALLKANYKPARFADRDGEIWGHEYSWNLARSSLQDLEKYGKSYVSKHSDRMGDGFSFGPDLVIIR
>NC_013365.1|WP_001395482.1|184139_184481_+|hypothetical-protein
MRELLGMAGAEHQASVMYQTFGHLDAKLGEKHKGHFVFINGQHGDLCVVHSEFSSFDEGPGYFSDRADFIWELVKNDGPCSKVGIYRFDGEYALPKRRNGRRFSGSVTCLQAF
>NC_013365.1|WP_001096299.1|183174_183951_+|hypothetical-protein
MAKLISTRELATIITALLVKPELLGELDSPEKHRALMEDLGRVVAEHCGGNVTEIALPETDGTAAEGALQNGQPVRYLETKESSPYLIVHPDASLPSVTQNVWMHADHDGWEEHFNGETDALTPEMSEQFRQQVYALLTPESHTTSSEMRLTLQDWQLGEAEIPEEDCQPYQVKVLAENKNVQCEVTNETGTTCFGLILEIDRGVPTLHIDTGSDSLLHIHAAHDGLVLTPDAPSHRFEDAPVDRFSYNSPSLLVPGV
>NC_013365.1|WP_000704115.1|192412_192928_-|hypothetical-protein
MKISTGMMKSNAPLIILICLMIAFSAYVKSWSLLYTLLAASVSLTVMISLPFIVSPLQHSKFIALRILRLLVITLWTIGLVGVFFSVVERLVWVNADSYPAWLAKELDSPAITDGENFIKATESFEKICGKNKGYLSVVTKHNGIFMRCDDSLSFDSWWKGVYRLKTPETR
>NC_013365.1|WP_001226764.1|193578_196035_-|DUF4165-domain-containing-protein
MRKILTGCIIATAIASVYPAAAQIFSYSYTDTNQLAKTLKPATQSYLNPASTMTLNLISGLDRYERVSVTRDSDKKVMYSAVTGKISVADRIVAADGTEYYGKDLALPALGEGAFTVINDTLDLQQAVVSSSTYHFTIDTTAPKYTSIYPSQNAGYEMVLSGPVWGLGRGGSGQFSIFADGVDDANGIDKIRLVIKRGNGTVVSDNTLSYDTAAKRAFYPWIKDSVTQPGMPTSDLNEEFTFNFIITDKAGNTLNIPPQRFLFDDQIGEYTPFAVHDSRVSTSVVPGISSGYVPFVRGLSVLENPYRMVIRIPRTNWKPYRNGGITILNNYGGAKVISEDTTYVYVEVKLPQGALDINYYRPVNTYQWSGGDLTQYASWLNWDPASVKSPAWGSPAIERQMSDGTWFNSVNWKYFKASDMPVNLTQIRFNVQARPYDQKITGGATCNIPAGSTSCTVALTQAITNGTTGYLHSGYEVRSTTESTFFMPIWENVVWHTLGPSVTGYDYNDTTNILQVYINQPGDGSYFDTVKLSRVWLSDKSRNNADINVTGTLTGRNTATGNYTYEFNLKLIPEGSYNVQLNAQDSFNNTGSLDYKTVTVDNTPPSISISYETKPITSSVTVYGLENIRIQLADTLTKPSLTRMTLRGGPVSDAVELSWVNLGNNLYAPNYPKIFPSLNDGETYTLTVQAKDEMNNVKESAVEFSYLPNNLVRLENLKTISVSTALKTSDDTPLAVLYASQLRKKDGSIATGKQDAILTVRKDAAFGVTVNGVSAAPGESKNVQLDLGLGDSRSFPIFPSTSGVVGTSEFMLNIEELK
>NC_013365.1|WP_000047134.1|196480_196657_-|hypothetical-protein
MSKSSPVLPEDRDDIEFVMDDFQRSLGKSKPVREVQFLGESQQSEESANSADSPWFES
>NC_013365.1|WP_001277090.1|196671_198348_-|DUF4942-domain-containing-protein
MSAVESDSLPMGAPGSSLVAYMPHTGLLINDDNFLPEMREELDVINRQVESYNDELSLLRSMSAQFLKCGNQKLYSYLSGYNHLISEADASYAENALRSEYWKRVMALTDVLSVMSDEKKKEWDKQFTADRYHLPPQEIPDFTLDAVVTTVVALLNDRHQFIKDRVYAVFQSLSRQHKTNKAFGFSTRMITSGVCEGVKDKWVKLKVEFKESGLMPLSELRVICSYFRGETVKPVYDTKKMVENMVGHVGFRNWISLDGNSIRFRVYKNGSMHIDVHPDIAERLNNILAAIVPLALPAERVAHTKATLQEFPALKRCIDFHSRMQLAELDFTQNEKEWSSWTSLGYAGENADKTRQVNADVLRFLGARVTSYHVTFDYDPTEVMRFIGHMGAMPDIKSHQFYPSSARLSEYVASIIAAGEGERLLEPNIGHGDLLQCFPKSVNVTGIELDTLNCLVSRAKGYETTEADFLAWSAANQIQKFDCVVMNPPFADNRAKLHLLAAASHLVPGGRLAAVLPLSLQGIDNLLGEGFRTEWMDTFDNEFDNTAVSVRVLYAERF
>NC_013365.1|WP_001281654.1|198611_199769_-|DNA-binding-protein
MSDLMTDSQQQTNSRVFKSPLVSFSTVTGSGRFVSGMKQFRDANPDLCNEVTEQKAWAISPTVVQITEGFNSREMGMGEAYYQLPEVADHLNNIKNAYIRGDYVDPIRVLIKDGIPYVRQGHCRLKAALMAVAEGHSNLTILCIEMKADEISCELTTIDGNRGLALSPVALGESYRRLQALGGWSLDRIAEREGKSNTTIAALIRLTGCCVYLKKLIHADAISYVAVLSLIDEFGETEAVARIEKMIADLEKADSSGIQIKKTPRGQIRVVPSDFKPARVPPVLATKAVEGVKLITTSLLQKLGDIELPEVTDSSEDEEITFTLNRSMLEMLKNLQSEITESENKQLRRAENRQARLKGEKVTYKTKKNDKNGGEPQSETPPAQA
>NC_013365.1|WP_001225593.1|200128_200953_+|Dam-family-site-specific-DNA-(adenine-N6)-methyltransferase
MRKHTPIIKWAGGKTKLMPFLSKHFPHDKSRRWVEPFIGGGAVFLNMFATEALLADSNPDLINLYRNIQRNKPAFIREVQLLAERHFEEEDYYVLRNTFNSTSFDDAPLQRAAIFYAMNRLGYNGLCRYNLKRKFSVPWGKRYQFSLDIQKVDYLSFRLSSVELKTADFGQTLEFAGGGDQIYCDPPYDKISKTSFVSYDGIPFDKSAHVKLADMLVDANRKGASVAISNSMTPFTLELYEERGFDIHTHNAYRSVGSQSKSRKKEIEILAVLR
>NC_013365.1|WP_001178650.1|200967_201789_-|hypothetical-protein
MQNDLGLGFIRKSARTSAKIISRKVTFPLDDLDNAKLTLTGLQCHPSCRFPFYQLSMLIHNQLAEHGVISADENAPFTVSISIHEWLSRARVAFIDYHGLRNSDKTVMITRAHLEELLTYLSTTLAVYVPYSKKRLNFSFLTSFTLVKTSQSYTLTFPGVLRPFLMLLGGLIQEFMTEKLLKRRNAQFVIFDYLRKSRRHSHKITDIVNDLQLHTVNVRIMNVLTQLADQGFISFICEGKRGERSIEELQFIPYASRDHSEVLSFEEWISPID
>NC_013365.1|WP_000682872.1|202071_202779_-|hypothetical-protein
MKHSLFFTQDGYLLPSSVKPIYGKDGHYYAVITRECFECGGTGKIANAVCVTCNGSKTSPATEEKLVLKECIEFLETIPELRCNPDLEAWKRRHSEQLALLQADNSKFAASIAQQLNNNLFLTVRQLESFYSTYQPVSEAFSENAGFPIEHSFNIGDVVSFDIIFTEVRAAFSKGSHSYFFTFTGKKQNDGFALTGNVQDHVLLGHSYHLSGKVRKIHYFDSVPYALLTVFKLTA
>NC_013365.1|WP_000357614.1|202775_202976_-|hypothetical-protein
MDKIAQFTVINTYNDLLITKGTLDRNIEEIKAGKRFDHFEEGHDQYVQKVTDALQLVEARLENLKK
>NC_013365.1|WP_001015069.1|202993_204070_-|hypothetical-protein
MNHCDYQIIEISPKALFIESGFNPREAVIGELCYEQEPVKSTIVSIKQAYKEGRRVDLIKVVKKDSNYVVRQGHCRYRALSLALAEGADIQLISVVVMNYKNKSEEYLENLDGNRNNGLNPVALAYALAEALKLGSTVESLAMRYQRSSTAIRNQLKILDMPLELQRLISLNLIKKTLAIEIMLKYSNDHAKVLAHLESCSLLVPSTEPEPVLSKTSSVQTSSNDEKLDNPETLPVHVIPKEVKTKSITRSSLGIKRLSHKKTERLKTEFIGLIDTVRPALNDSNKLTELIFDGQHSNLFTNISSTSITKTTESVKITLDEAKLQLLLSLLNDENTAIIIPKSKVTELHEIRDLLTSE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81476-81526	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	182983-183033	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180762-180812	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96276-96326	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235796-235846	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42635-42685	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152742-152792	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142863-142913	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133710-133760	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117174-117224	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192529-192579	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11544-11594	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77135-77185	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247816-247866	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175824-175874	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29608-29658	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195030-195080	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160405-160455	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229056-229106	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1240-1290	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150895-150945	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222888-222938	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157698-157748	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163625-163675	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139403-139453	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103197-103247	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NC_002305	Salmonella typhi plasmid R27, complete sequence	54047-54097	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156262-156312	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	114948-114998	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99282-99332	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190141-190191	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186842-186892	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163174-163224	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95412-95462	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154888-154938	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135342-135392	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101555-101605	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111577-111627	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163625-163675	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192086-192136	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157699-157749	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237889-237939	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79517-79567	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27631-27681	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106159-106209	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267735-267785	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173816-173866	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95376-95426	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230101-230151	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20571-20621	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1141-1191	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259337-259387	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210872-210922	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110178-110228	1.0
NC_013365_1	1.1\|192086\|51\|NC_013365\|PILER-CR	192086-192136	51	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111658-111708	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42568-42614	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152675-152721	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142796-142842	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133643-133689	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117107-117153	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192462-192508	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11477-11523	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150828-150874	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163558-163604	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139336-139382	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103130-103176	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NC_002305	Salmonella typhi plasmid R27, complete sequence	53980-54026	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190074-190120	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154821-154867	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135275-135321	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101488-101534	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163558-163604	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79450-79496	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230034-230080	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110111-110157	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81547-81593	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	183054-183100	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180833-180879	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96347-96393	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235867-235913	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77206-77252	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247887-247933	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175895-175941	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29679-29725	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195101-195147	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160476-160522	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229127-229173	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1311-1357	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222959-223005	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157769-157815	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156333-156379	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	115019-115065	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99353-99399	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186913-186959	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163245-163291	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95483-95529	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111648-111694	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192157-192203	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157770-157816	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237960-238006	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27702-27748	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106230-106276	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267806-267852	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173887-173933	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95447-95493	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20642-20688	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1212-1258	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259408-259454	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210943-210989	1.0
NC_013365_1	1.2\|192157\|47\|NC_013365\|PILER-CR	192157-192203	47	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111729-111775	1.0

1. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

2. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

3. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

4. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

5. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

6. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

7. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

8. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

9. spacer 1.1|192086|51|NC_013365|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

10. spacer 1.1|192086|51|NC_013365|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

11. spacer 1.1|192086|51|NC_013365|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

12. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

13. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

14. spacer 1.1|192086|51|NC_013365|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

15. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

16. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

17. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

18. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

19. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

20. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

21. spacer 1.1|192086|51|NC_013365|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

22. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

23. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

24. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

25. spacer 1.1|192086|51|NC_013365|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

26. spacer 1.1|192086|51|NC_013365|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

27. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

28. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

29. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

30. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

31. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

32. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

33. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

34. spacer 1.1|192086|51|NC_013365|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

35. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

36. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

37. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

38. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

39. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

40. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

41. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

42. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

43. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

44. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

45. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

46. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

47. spacer 1.1|192086|51|NC_013365|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

48. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

49. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

50. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

51. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

52. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

53. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

54. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

55. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

56. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

57. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

58. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

59. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

60. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

61. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

62. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

63. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

64. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

65. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

66. spacer 1.1|192086|51|NC_013365|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

67. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

68. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

69. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

70. spacer 1.1|192086|51|NC_013365|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

71. spacer 1.1|192086|51|NC_013365|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

72. spacer 1.1|192086|51|NC_013365|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

73. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

74. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

75. spacer 1.2|192157|47|NC_013365|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

76. spacer 1.2|192157|47|NC_013365|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

77. spacer 1.2|192157|47|NC_013365|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

78. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

79. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

80. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

81. spacer 1.2|192157|47|NC_013365|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

82. spacer 1.2|192157|47|NC_013365|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

83. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

84. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

85. spacer 1.2|192157|47|NC_013365|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

86. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

87. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

88. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

89. spacer 1.2|192157|47|NC_013365|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

90. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

91. spacer 1.2|192157|47|NC_013365|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

92. spacer 1.2|192157|47|NC_013365|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

93. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

94. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

95. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

96. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

97. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

98. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

99. spacer 1.2|192157|47|NC_013365|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

100. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

101. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

102. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

103. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

104. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

105. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

106. spacer 1.2|192157|47|NC_013365|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

107. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

108. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

109. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

110. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

111. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

112. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

113. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

114. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

115. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

116. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

117. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

118. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

119. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

120. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

121. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

122. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

123. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

124. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

125. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

126. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

127. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

128. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

129. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

130. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

131. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

132. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

133. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

134. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

135. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

136. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

137. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

138. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

139. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

140. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

141. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

142. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

143. spacer 1.2|192157|47|NC_013365|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

144. spacer 1.2|192157|47|NC_013365|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

65528 : 115749

Escherichia_phage(28.57%)

transposase,integrase

attL 63827:63843|attR 87494:87510

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
63827:63843	attL	NA	NA	NA	NA
WP_001086279.1\|65528_66710_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001324690.1\|66924_67137_+	hypothetical protein	NA	NA	NA	NA
WP_000807689.1\|68722_69478_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	1.9e-134	94.8
WP_001232452.1\|70962_72036_+	hypothetical protein	NA	NA	NA	NA
WP_000416123.1\|72292_72769_-	hypothetical protein	NA	NA	NA	NA
WP_000341067.1\|73448_73841_+	hypothetical protein	NA	NA	NA	NA
WP_000493077.1\|74253_74457_+	hypothetical protein	NA	NA	NA	NA
WP_001255860.1\|74611_75817_+	hypothetical protein	NA	NA	NA	NA
WP_000778959.1\|75986_76478_+	hypothetical protein	NA	NA	NA	NA
WP_001209044.1\|76916_77723_+	HNH endonuclease	G0X580	Salmonella_phage	1.3e-13	37.9
WP_001178596.1\|77840_78248_+	hypothetical protein	NA	NA	NA	NA
WP_023145242.1\|78294_79005_+	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	7.7e-05	34.3
WP_001287388.1\|79770_80175_-	H-NS histone family protein	NA	NA	NA	NA
WP_001082182.1\|80436_80709_-	hypothetical protein	NA	NA	NA	NA
WP_010892343.1\|80705_81374_-	hypothetical protein	NA	NA	NA	NA
WP_000062400.1\|81880_82336_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000272280.1\|82504_82693_+	hypothetical protein	NA	NA	NA	NA
WP_000131802.1\|82698_83916_+	hypothetical protein	NA	NA	NA	NA
WP_000323423.1\|83970_84174_-	hypothetical protein	NA	NA	NA	NA
WP_000529857.1\|84211_85507_-	DUF1173 family protein	NA	NA	NA	NA
WP_011011077.1\|85531_85702_-	hypothetical protein	NA	NA	NA	NA
WP_173051575.1\|85830_87222_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.9e-101	55.1
WP_000173534.1\|87481_87997_+	thermonuclease family protein	V5UN65	Mycobacterium_phage	7.1e-08	28.3
87494:87510	attR	NA	NA	NA	NA
WP_005046389.1\|88002_88926_+	hypothetical protein	NA	NA	NA	NA
WP_000250919.1\|88981_89761_+	hypothetical protein	NA	NA	NA	NA
WP_000429174.1\|90108_90408_+	hypothetical protein	NA	NA	NA	NA
WP_001352368.1\|91398_92607_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_000599533.1\|92972_94178_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_000562370.1\|94621_94942_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000460651.1\|94934_95321_+	hypothetical protein	NA	NA	NA	NA
WP_001447544.1\|95328_96015_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088605.1\|95992_96616_-	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001089068.1\|96697_97903_+	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_000429836.1\|99186_99621_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|99692_100043_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732293.1\|100056_100332_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001340589.1\|100367_100790_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000105636.1\|100841_102536_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|102553_102916_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000993386.1\|102912_103149_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001300294.1\|103184_103853_+	EAL domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|105242_105947_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|106136_106952_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067855.1\|107102_107807_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000480968.1\|107867_108704_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|108703_109507_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043265.1\|109567_110383_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	3.5e-09	27.6
WP_000240536.1\|110690_111542_-	replication protein	NA	NA	NA	NA
WP_001067855.1\|112297_113002_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000027057.1\|113599_114460_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|115044_115749_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_013366

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7945 : 52640

Escherichia_phage(30.77%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998093.1\|7945_9484_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.8e-299	99.6
WP_001282151.1\|9878_10268_-	IS66 family insertion sequence hypothetical protein	B6DZU5	Stx2-converting_phage	7.8e-68	99.2
WP_001369432.1\|11001_11214_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_001233838.1\|11458_11920_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	4.2e-20	37.1
WP_001369435.1\|11965_12175_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_000766811.1\|12212_12803_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000083826.1\|13042_13300_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365571.1\|13534_13609_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000130993.1\|13601_14459_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001344604.1\|15161_15422_+	hypothetical protein	NA	NA	NA	NA
WP_000859016.1\|15434_15674_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000937595.1\|15877_17065_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000091308.1\|17064_17430_-	hypothetical protein	NA	NA	NA	NA
WP_000997720.1\|17568_17823_-	hypothetical protein	NA	NA	NA	NA
WP_000789660.1\|17833_18025_-	hypothetical protein	K7PLX1	Enterobacteria_phage	3.5e-05	41.3
WP_001034091.1\|18329_22295_-	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	1.1e-230	39.9
WP_162829242.1\|22614_23828_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	2.2e-169	100.0
WP_162829202.1\|25108_26321_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000445936.1\|26773_27169_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_000921961.1\|27168_28128_-	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	6.0e-61	40.6
WP_000937595.1\|28806_29994_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000091308.1\|29993_30359_-	hypothetical protein	NA	NA	NA	NA
WP_072106536.1\|30731_31034_+	antirestriction protein	NA	NA	NA	NA
WP_000271680.1\|31080_31503_+	DUF1380 family protein	NA	NA	NA	NA
WP_001027516.1\|31499_31691_+	hypothetical protein	NA	NA	NA	NA
WP_013279293.1\|31966_32191_-	hypothetical protein	NA	NA	NA	NA
WP_000218642.1\|32728_32959_+	hypothetical protein	NA	NA	NA	NA
WP_000170683.1\|33010_34372_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_077625669.1\|35132_35435_+	hypothetical protein	NA	NA	NA	NA
WP_032175643.1\|35485_35680_+	hypothetical protein	NA	NA	NA	NA
WP_000290792.1\|35907_36435_+	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	4.6e-47	54.1
WP_000006004.1\|36490_36724_+	DUF905 domain-containing protein	A0A096XUX0	Cronobacter_phage	3.9e-06	51.1
WP_001145472.1\|36782_38741_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	6.6e-22	29.9
WP_000845949.1\|38795_39230_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276234.1\|39226_39946_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001299721.1\|39957_40146_-	hypothetical protein	NA	NA	NA	NA
WP_001312861.1\|40225_40384_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001427866.1\|40737_40962_-	hypothetical protein	NA	NA	NA	NA
WP_032351767.1\|40884_41073_+	hypothetical protein	NA	NA	NA	NA
WP_000107535.1\|41305_41593_+	hypothetical protein	NA	NA	NA	NA
WP_001234469.1\|41713_42535_+	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	4.4e-44	38.2
WP_001151524.1\|43754_44138_+	relaxosome protein TraM	NA	NA	NA	NA
WP_000283394.1\|44324_45014_+	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_001309237.1\|45112_45508_+	conjugal transfer relaxosome protein TraY	NA	NA	NA	NA
WP_000994781.1\|45540_45900_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_000012104.1\|45914_46226_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_000399789.1\|46247_46814_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_072095570.1\|46824_47529_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_000146670.1\|47528_48956_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_000002783.1\|48945_49536_+	conjugal transfer protein TraP	NA	NA	NA	NA
WP_001369729.1\|49522_49645_+	DUF2689 domain-containing protein	NA	NA	NA	NA
WP_162829202.1\|51426_52640_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013364

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_013370

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_013365

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_013366

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection