CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013799	Hydrogenobacter thermophilus TK-6, complete genome	1 crisprs	csa3,TnpB_regular.1,cas3,DinG,Cas14u_CAS-V,cas2,cas1,cas4,cas5,cas7,cas8b1,cas6,DEDDh,Cas14b_CAS-V-F,cas14k	1	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013799_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013799_1

1122544-1124919

TypeI-B

Consensus_repeat	Method
GTTTCAATCCCTTATAGGCACCTAATAAAC	CRISPRCasFinder
GTTTCAATCCCTTATAGGCACCTAATAAAC	CRT
GTTTCAATCCCTTATAGGCACCTAATAAAC	PILER-CR

35 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6

The CRISPR arrays of NC_013799_1

>merge|NC_013799|1|1122544-1124919|CRISPRCasFinder,CRT,PILER-CR
GATAAGGACCCTTATAGGCACCTAATAAACGTCCCCGGTGGACCAAACGCCTTTTTTACACGCATCGTTTCAATCCCTTATAGGCACCTAATAAACTTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCCGTTTCAATCCCTTATAGGCACCTAATAAACCGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCGGTTTCAATCCCTTATAGGCACCTAATAAACATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAAGTTTCAATCCCTTATAGGCACCTAATAAACTTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCCGTTTCAATCCCTTATAGGCACCTAATAAACCGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCGGTTTCAATCCCTTATAGGCACCTAATAAACATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAAGTTTCAATCCCTTATAGGCACCTAATAAACTGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCAGTTTCAATCCCTTATAGGCACCTAATAAACATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAAGTTTCAATCCCTTATAGGCACCTAATAAACTGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCAGTTTCAATCCCTTATAGGCACCTAATAAACACACCTTCCAAGAAAGGCAGTCAGCGCCTTTGAGGTGTTTCAATCCCTTATAGGCACCTAATAAACGTGAAGCGCCGCCAAATGAATAGCGAGCCACATTTAAGTTTCAATCCCTTATAGGCACCTAATAAACGTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGAGTTTCAATCCCTTATAGGCACCTAATAAACGCATGAGCTGCAAGGATTTTCCAGCGAGCCACATTTAGGTTTCAATCCCTTATAGGCACCTAATAAACAGAGTATGTTTAGCTTTTCTTGGGTAGCCTTGACGAGTTTCAATCCCTTATAGGCACCTAATAAACTTCTTTCTCGTGTTCTTTCTTATTTTCCTGATATCGCGTTTCAATCCCTTATAGGCACCTAATAAACGTGCTCGGAAGACAAAGGCTCGTACAACCAAACAGCGTTTCAATCCCTTATAGGCACCTAATAAACTGTTCAAAGCTTTGAGTATCAAGTTCTAATACTTTCGTTTCAATCCCTTATAGGCACCTAATAAACAATACACTTTTCTTTGAGGCAGGGGGGGGATATACAGTTTCAATCCCTTATAGGCACCTAATAAACTCCTGCAACACTGTCATTTGCATCCAGCGCAATCCCAGGTTTCAATCCCTTATAGGCACCTAATAAACTCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGAGTTTCAATCCCTTATAGGCACCTAATAAACATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCTGTTTCAATCCCTTATAGGCACCTAATAAACTCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGAGTTTCAATCCCTTATAGGCACCTAATAAACATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCTGTTTCAATCCCTTATAGGCACCTAATAAACCAAATCCTTGAGAGGCAACCAAAAGAGATGTGGAACAGTTTCAATCCCTTATAGGCACCTAATAAACACTCCTTATTGATCATAGCGTTTTTGATGATATATGCGTTTCAATCCCTTATAGGCACCTAATAAACCATAGGCATTGACGAAGGGGATATCTACTTTACCGCCGTTTCAATCCCTTATAGGCACCTAATAAACATGAATATCTTTTTTTGTTTTTCGTAGGCGTGGTAGAGTTTCAATCCCTTATAGGCACCTAATAAACACAGAAGAAAACAGCTCGCCTTCTATCCAAACTTTCCGTTTCAATCCCTTATAGGCACCTAATAAACGGGTATACTTGAGAGAGAAATTTCAGGACCAAAAATCGTTTCAATCCCTTATAGGCACCTAATAAACCCCGGGGGTTTAAAGGGGACCTTCACTTATATATACAGTTTCAATCCCTTATAGGCACCTAATAAACTATTCCACCCTTTTCCCTTTTGCCCTGCTGTTCTTCAGTTTCAATCCCTTATAGGCACCTAATAAACAAGAATTATGCATTTTTCCAGTTTTTGGAATTTTGCAGTTTCAATCCCTTATAGGCACCTAATAAACGTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGAGTTTCAATCCCTTATAGGCACCTAATAAACTTCCGGAAGCAAGCGAGGAACTTATTGACGGATTAAGTTTCAATCCCTTATAGGCACCTAATAAAC

>NC_013799|1|1|1122544-1124919|CRISPRCasFinder
GATAAGGACCCTTATAGGCACCTAATAAAC	GTCCCCGGTGGACCAAACGCCTTTTTTACACGCATC
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACACCTTCCAAGAAAGGCAGTCAGCGCCTTTGAGGT
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTGAAGCGCCGCCAAATGAATAGCGAGCCACATTTAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GCATGAGCTGCAAGGATTTTCCAGCGAGCCACATTTAG
GTTTCAATCCCTTATAGGCACCTAATAAAC	AGAGTATGTTTAGCTTTTCTTGGGTAGCCTTGACGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTCTTTCTCGTGTTCTTTCTTATTTTCCTGATATCGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTGCTCGGAAGACAAAGGCTCGTACAACCAAACAGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGTTCAAAGCTTTGAGTATCAAGTTCTAATACTTTC
GTTTCAATCCCTTATAGGCACCTAATAAAC	AATACACTTTTCTTTGAGGCAGGGGGGGGATATACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCCTGCAACACTGTCATTTGCATCCAGCGCAATCCCAG
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT
GTTTCAATCCCTTATAGGCACCTAATAAAC	CAAATCCTTGAGAGGCAACCAAAAGAGATGTGGAACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACTCCTTATTGATCATAGCGTTTTTGATGATATATGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CATAGGCATTGACGAAGGGGATATCTACTTTACCGCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATGAATATCTTTTTTTGTTTTTCGTAGGCGTGGTAGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACAGAAGAAAACAGCTCGCCTTCTATCCAAACTTTCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	GGGTATACTTGAGAGAGAAATTTCAGGACCAAAAATC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CCCGGGGGTTTAAAGGGGACCTTCACTTATATATACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TATTCCACCCTTTTCCCTTTTGCCCTGCTGTTCTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	AAGAATTATGCATTTTTCCAGTTTTTGGAATTTTGCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTCCGGAAGCAAGCGAGGAACTTATTGACGGATTAA
GTTTCAATCCCTTATAGGCACCTAATAAAC

>NC_013799|1|1|1122544-1124919|CRT
GATAAGGACCCTTATAGGCACCTAATAAAC	GTCCCCGGTGGACCAAACGCCTTTTTTACACGCATC
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACACCTTCCAAGAAAGGCAGTCAGCGCCTTTGAGGT
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTGAAGCGCCGCCAAATGAATAGCGAGCCACATTTAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GCATGAGCTGCAAGGATTTTCCAGCGAGCCACATTTAG
GTTTCAATCCCTTATAGGCACCTAATAAAC	AGAGTATGTTTAGCTTTTCTTGGGTAGCCTTGACGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTCTTTCTCGTGTTCTTTCTTATTTTCCTGATATCGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTGCTCGGAAGACAAAGGCTCGTACAACCAAACAGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGTTCAAAGCTTTGAGTATCAAGTTCTAATACTTTC
GTTTCAATCCCTTATAGGCACCTAATAAAC	AATACACTTTTCTTTGAGGCAGGGGGGGGATATACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCCTGCAACACTGTCATTTGCATCCAGCGCAATCCCAG
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT
GTTTCAATCCCTTATAGGCACCTAATAAAC	CAAATCCTTGAGAGGCAACCAAAAGAGATGTGGAACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACTCCTTATTGATCATAGCGTTTTTGATGATATATGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CATAGGCATTGACGAAGGGGATATCTACTTTACCGCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATGAATATCTTTTTTTGTTTTTCGTAGGCGTGGTAGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACAGAAGAAAACAGCTCGCCTTCTATCCAAACTTTCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	GGGTATACTTGAGAGAGAAATTTCAGGACCAAAAATC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CCCGGGGGTTTAAAGGGGACCTTCACTTATATATACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TATTCCACCCTTTTCCCTTTTGCCCTGCTGTTCTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	AAGAATTATGCATTTTTCCAGTTTTTGGAATTTTGCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTCCGGAAGCAAGCGAGGAACTTATTGACGGATTAA
GTTTCAATCCCTTATAGGCACCTAATAAAC

>NC_013799|1|1|1122610-1124919|PILER-CR
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTTATGTCTGCTATTTTCTCCCTTGTTGTGGGTGCCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CGCCTCCAATAAAACAGGGTATAAATATGGGTCTCCG
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATTTAACATAGGCATAAGCGAGTAAGTGTTGATATAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGAGATATGTAGAGCAGCTACAGGAGGCAAAGTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACACCTTCCAAGAAAGGCAGTCAGCGCCTTTGAGGT
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTGAAGCGCCGCCAAATGAATAGCGAGCCACATTTAA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GCATGAGCTGCAAGGATTTTCCAGCGAGCCACATTTAG
GTTTCAATCCCTTATAGGCACCTAATAAAC	AGAGTATGTTTAGCTTTTCTTGGGTAGCCTTGACGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTCTTTCTCGTGTTCTTTCTTATTTTCCTGATATCGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTGCTCGGAAGACAAAGGCTCGTACAACCAAACAGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	TGTTCAAAGCTTTGAGTATCAAGTTCTAATACTTTC
GTTTCAATCCCTTATAGGCACCTAATAAAC	AATACACTTTTCTTTGAGGCAGGGGGGGGATATACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCCTGCAACACTGTCATTTGCATCCAGCGCAATCCCAG
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT
GTTTCAATCCCTTATAGGCACCTAATAAAC	TCTTCACATTTTCAAAGAGTTTGGAATACCTACAGGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATACACACAGAAGAGGTAATTTTAAAGACTTTGCAAGCCT
GTTTCAATCCCTTATAGGCACCTAATAAAC	CAAATCCTTGAGAGGCAACCAAAAGAGATGTGGAACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACTCCTTATTGATCATAGCGTTTTTGATGATATATGC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CATAGGCATTGACGAAGGGGATATCTACTTTACCGCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	ATGAATATCTTTTTTTGTTTTTCGTAGGCGTGGTAGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	ACAGAAGAAAACAGCTCGCCTTCTATCCAAACTTTCC
GTTTCAATCCCTTATAGGCACCTAATAAAC	GGGTATACTTGAGAGAGAAATTTCAGGACCAAAAATC
GTTTCAATCCCTTATAGGCACCTAATAAAC	CCCGGGGGTTTAAAGGGGACCTTCACTTATATATACA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TATTCCACCCTTTTCCCTTTTGCCCTGCTGTTCTTCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	AAGAATTATGCATTTTTCCAGTTTTTGGAATTTTGCA
GTTTCAATCCCTTATAGGCACCTAATAAAC	GTTCTTGGTGGAGAGCGGGATGATAACGGGAACTGGA
GTTTCAATCCCTTATAGGCACCTAATAAAC	TTCCGGAAGCAAGCGAGGAACTTATTGACGGATTAA
GTTTCAATCCCTTATAGGCACCTAATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013799.1\|WP_012963885.1\|1132470_1133208_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_013799.1\|WP_012963884.1\|1130744_1132487_-\|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|378190
NC_013799.1\|WP_012963869.1\|1117749_1118022_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|224174
NC_013799.1\|WP_012963877.1\|1121893_1122469_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013799.1\|WP_012963881.1\|1126829_1129136_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_013799.1\|WP_012963882.1\|1129090_1129852_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_013799.1\|WP_012963873.1\|1120478_1120877_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376293
NC_013799.1\|WP_012963871.1\|1118443_1119349_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|260116
NC_013799.1\|WP_012963870.1\|1118039_1118405_-\|hypothetical-protein	unknown	unknown	unknown
NC_013799.1\|WP_012963883.1\|1129858_1130761_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|274217
NC_013799.1\|WP_012963875.1\|1121199_1121400_+\|DUF542-domain-containg-protein	unknown	unknown	gnl\|CDD\|377347
NC_013799.1\|WP_012963872.1\|1119311_1120421_+\|aminofutalosine-synthase-MqnE	unknown	unknown	gnl\|CDD\|213851
NC_013799.1\|WP_012963886.1\|1133260_1134934_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_013799.1\|WP_012963880.1\|1126333_1126840_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_013799.1\|WP_012963876.1\|1121413_1121833_-\|DsrE/DsrF/DrsH-like-family-protein	unknown	unknown	gnl\|CDD\|225120
NC_013799.1\|WP_012963887.1\|1134938_1136648_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NC_013799.1\|WP_012963868.1\|1116365_1117781_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366703
NC_013799.1\|WP_012963879.1\|1125347_1126337_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_013799.1\|WP_012963878.1\|1125080_1125347_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_013799.1\|WP_012963874.1\|1120881_1121184_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224829

Protein	Function_ID	Function_description	E-value
NC_013799.1\|WP_012963885.1\|1132470_1133208_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.93579e-32
NC_013799.1\|WP_012963874.1\|1120881_1121184_+\|cupin-domain-containing-protein	gnl\|CDD\|224829	COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown].	3.41536e-11
NC_013799.1\|WP_012963875.1\|1121199_1121400_+\|DUF542-domain-containg-protein	gnl\|CDD\|377347	pfam04405, ScdA_N, Domain of Unknown function (DUF542). This domain is always found in conjunction with the HHE domain (pfam03794) at the N-terminus.	3.00412e-14
NC_013799.1\|WP_012963877.1\|1121893_1122469_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.83414e-20
NC_013799.1\|WP_012963882.1\|1129090_1129852_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.09563e-43
NC_013799.1\|WP_012963884.1\|1130744_1132487_-\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|378190	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This minor cas protein is found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	1.00374e-125
NC_013799.1\|WP_012963873.1\|1120478_1120877_+\|hypothetical-protein	gnl\|CDD\|376293	pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.	0.00504412
NC_013799.1\|WP_012963871.1\|1118443_1119349_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|260116	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. The 4-hydroxy-3-methylbut-2-enyl diphosphate (HMBPP) reductase (called lytB or ispH) is the terminal enzyme of the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway, one of the two metabolic routes for isoprenoid biosynthesis. The MEP pathway is essential in many eubacteria, plants, and the malaria parasite. LytB converts HMBPP into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).	2.11018e-143
NC_013799.1\|WP_012963883.1\|1129858_1130761_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|274217	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csh2 protein of the Hmari subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02589, the Csd3 protein of the Dvulg CRISPR subtype.	1.61642e-87
NC_013799.1\|WP_012963881.1\|1126829_1129136_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.9632e-47
NC_013799.1\|WP_012963872.1\|1119311_1120421_+\|aminofutalosine-synthase-MqnE	gnl\|CDD\|213851	TIGR03700, mena_SCO4494, putative menaquinone biosynthesis radical SAM enzyme, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.57542e-177
NC_013799.1\|WP_012963886.1\|1133260_1134934_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_013799.1\|WP_012963880.1\|1126333_1126840_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.64034e-61
NC_013799.1\|WP_012963876.1\|1121413_1121833_-\|DsrE/DsrF/DrsH-like-family-protein	gnl\|CDD\|225120	COG2210, COG2210, Peroxiredoxin family protein [General function prediction only].	1.0381e-16
NC_013799.1\|WP_012963887.1\|1134938_1136648_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NC_013799.1\|WP_012963868.1\|1116365_1117781_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.37184e-29
NC_013799.1\|WP_012963879.1\|1125347_1126337_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.6802e-171
NC_013799.1\|WP_012963878.1\|1125080_1125347_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.87119e-30
NC_013799.1\|WP_012963869.1\|1117749_1118022_-\|acylphosphatase	gnl\|CDD\|224174	COG1254, AcyP, Acylphosphatases [Energy production and conversion].	1.60189e-27

>NC_013799.1|WP_012963877.1|1121893_1122469_-|TetR/AcrR-family-transcriptional-regulator
MSKKQLGEYTRRSIILTAKRLFVEKGYFNTSMRDIAKEAGVSTGALYHHFKSKEEIASEIYRETVEKIKERLETALRKGKGTKEKITGIIRELLILAEEDRYTMEYALYVKHREILDVPVCSTEPMELLKKFCRKEINKGRIRDIDPELCAVCITAAPVRLMQLKWDGVIKDPLTSYAGSLGECVWRSLSP
>NC_013799.1|WP_012963876.1|1121413_1121833_-|DsrE/DsrF/DrsH-like-family-protein
MKTMAMVVRQDAYDLVLTPLAFAYLGVAYYDEINILFVNWAVRLLSKQGVEAIKPSADHAGTPVEMIEERVKAAGLPADLHEIFKKLKETGKVHLYACSLAAQIFGVEERDLIPEADGIVGATWFLTEKAEPATIFMQY
>NC_013799.1|WP_012963875.1|1121199_1121400_+|DUF542-domain-containg-protein
MIDKSMTVNELLRSYPQVQALLEKYYIDYCCGGHRTLEEVAKEHGFDLNEFLEEVRILITKLNKGA
>NC_013799.1|WP_012963874.1|1120881_1121184_+|cupin-domain-containing-protein
MKVNLLKVPFDESRTRHTLAYDSKEARLVVFSMPPGSEVPPHTSPSRVLLYCAKGSGEFLKGKDWIAVEEGDVVACEPLEPHGMKASTPMIVVATIAPAP
>NC_013799.1|WP_012963873.1|1120478_1120877_+|hypothetical-protein
MNSLTKVNLLLSFLYLLLGSLLGLMLGYKQTASSLFSMGGSPTLAHAHLQLVGFVTQMIVGVTYHIVPMLSRGKINSFKLGYLHTALLNAGLLIQVWGFLTDRILFKSFGSLLLFASIVMYLFNILKSMKWR
>NC_013799.1|WP_012963872.1|1119311_1120421_+|aminofutalosine-synthase-MqnE
MNIVGLVEKVQDKNLRRIGEKVLKGERLSPEDAIYLFYSSELAYIGALSEYINRKKNGMFAYFIVNRQINPTNVCIYQCSFCAFGVTKSDPRAYEMSLEDILKKVGETYAQGGREVHIVGGIPHHWKAEDYVRLVREVKRAFPEITVKAWTAIEIHHMSKISGRSYEDILKELKDAGVEVLPGGGAEIFSERVRSIIAPYKANAQEYLEVHRTAHKLGIPTNATMLYGHVETYEERVEHMLKLRELQDETGGFQVFIPLAYWPEGTKLGGKRTSSVDDLKTIAISRLFLDNFEHIKAYWVTLGEKVAQIALNFGADDIDGTIEEEKIVHSAGTKSAYGHSRERLIKLIKDAQKIPVERDTFYRPVSIHS
>NC_013799.1|WP_012963871.1|1118443_1119349_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MVEIVVAEHAGFCFGVKRAISIAEQSSELSKQGKRVFTMGPLIHNPQEVERLRKKGVELLYTEDALKSGDTVIIRSHGIPPKKERQLKELGLNVMDATCPYVKAVHDAVVKLSQEGYFVVLVGEKSHPEVIGTLGYLEESGGKGTVVESFDDLKAVLGKDKVGIVAQTTQNEQFFKEVVGEIAIWAKEVKVINTICNATSERQEDVYKLAPEVDVMIIIGGKNSGNTRRLYEISRSLNLNSYHIETADDIKPEWFIGVKRVGITAGASTPDWIINSVVERIREVSKEEQNEYSRTCREGAG
>NC_013799.1|WP_012963870.1|1118039_1118405_-|hypothetical-protein
MCKRLMSFIIALGLFSCTGKGTYKEATNSWCPKGVSFSGITSITVEGIVDYEELNWCKVVITSGDMRSEIYFTQDGSRQRWVQYKGGTIRSETQIRKTKAIMRIYDERGNLIEEVRSKEAF
>NC_013799.1|WP_012963869.1|1117749_1118022_-|acylphosphatase
MVAYRVFLSGIVQGVGFRAYTKTLAESYGLDGWVRNMPDGRVEVFVQGDKDTVWDFFKKLSEGPPLSKVELMEIRKEVIRDEERGFSVRY
>NC_013799.1|WP_012963868.1|1116365_1117781_-|LysM-peptidoglycan-binding-domain-containing-protein
MKREVLALGISVLLGFAYAKECEYYKIQKGDTLTGIAKKKGVSVEDILSHNKHLDPNRVKVGEKICIPTGYVKSVRAKTKEYDYYVVERGGRLEHVAKRLGLPVKELEELNPKYKGAWLEKGTKVKVPKGVLKAEQTKEATTRAKQDYDYYVMQKGGKLEHVAKRLGVPLKELEALNPEYKGKFLSKGTKVKVPKGEEKEEKKVAEESYDFYTVERGAKLEHISKKLGISLKTLEKLNPEYKGVWLKKGTRVKIPKGTAKSEEIPGGKTKVSYVKHRVRRGETISSIAEKYGVSTKEVMRVNHLKSKKLHVGMVLKIPVSAVAKEEKTPKLGEKNTASIPEERQAPPTEIKVSKGSIPMPVDGKVVKSTRGVDIITNCGEAVRSVDDGKVIYSGDDLQAYGNMVIIEHGDFISLYAYNSKNMVKRGETVSKGQQIATAGTKNNSGECMLHFELRTKDGVPLDPTEYLRNAQ
>NC_013799.1|WP_012963878.1|1125080_1125347_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDVKEERVAKALKICRKYLTWVQNSVFEGEITEAKLRMLKDELKGIMDETYDSVIIYKFRTKQYYERETLGIEKPSHEDFIV
>NC_013799.1|WP_012963879.1|1125347_1126337_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKPLYIFSSGRLERRENTLSLETQEGRKVIPINSVSEIKVFGELDINKRALEFLTRNQIPVHFFNHYGYYIGSFYPREALNSGFIILKQAEHYLDREKRMYLAKGFVAGAVNNILKNLEYYRRKGKDLKETISSIEEKFKAVSSVDSIAELMQVEGEIRKTYYESFNLIIQVEGFYFDKRTKRPPENPINALISFGNSLLYTTVLSEIYRTHLDPRIGYLHETNQRSFSLNLDISEVFKPVIVDRVIFSLLNKGQMQLKHFDSDVGFSYLNDKGRSIFVKEFEDKLNTTIKHRNLGNVSYRRLMRIECYKLYKHFMDEEIYKPFVGEW
>NC_013799.1|WP_012963880.1|1126333_1126840_-|CRISPR-associated-protein-Cas4
MRYEDRISIGGTLVWYYYICKREVWLIGHGIEAEQENDYILLGRYIQEIFYTRKRKEIMIDNTIKIDILPGRKVIGEIKKSSKFLESAKMQVVFYLYYMKREKGIDMEGVLLIPEERKRIKVSLTPELEREIEEVIEDIGRILKLEKPPKAVKIPYCKKCAYRSMCWA
>NC_013799.1|WP_012963881.1|1126829_1129136_-|CRISPR-associated-helicase/endonuclease-Cas3
METKSGIYSHPGIFIEDHINRCLELLSFYLQRELPLISDEFVLSATLSVALHDFGKCTKYFQDYITGKGRRSEFSKHSLLSAVYTYYCAKKLISDPKLLSFSFVACKSHHTDPESFTSEFTFDKDEIERLKIQIESIDQEKTNIFISNLNLPENVKKSLFLNKEEFKNKLTEIEKEIKSFRKSFHKCESKIEDFVKFQYLFSLLLDSDKTETGAKSFRPKRVSCIPLHVVSRYKANNLPKSREIDHLREEAYKEILSKEVDLSKRIYSITLPTGMGKTLTGFAFALKLRELIKNEKGTTPRIIYSLPFVSIIDQNAEVLIKVLKTEFHEIEGRILIKHHHLSEPRFEEYEFSEARLLTEGWNSEIVITTFVQLFHTLISARNSEFRRFNKLANSILLIDEVQALPTKYWHLIREVLREVSKNLDVYIILMTATQPYLLEEAVELADPHVFRKRLDRIRVFINLEGVSLGQFVNSLEFKKDKTYLFITNTISSSKELYRLLKERMNEKICYLSTSVLPYERLRRIEEIKKGKYRFVVSTQLVEAGVDIDFDEVYRDFAPFDSLNQSAGRCNRNMERGKGNFYVIKLTDSEGKPFYSRIYDSVLCNITEEMLKGVKELSEPELTNLIEEYFCKVWEKTTPDKSKKILEAVKCFSFSSGDISIRNFELMEDDRYKKDVFVEINDEASEVWSRAKSIIEDLKKKKIDIFKAKEEFEKLKPDFYKFVVTVNIKENEPSYDQELKTFFVSQDMLERYYNSETGFIEKGEAFFEV
>NC_013799.1|WP_012963882.1|1129090_1129852_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLVFDLFGDLGHFRKFYTTSSPLTFPFPPQPTIRGIIGAIMGFGKEEYLDKTKDIYVGVKIVNPIKKLRTGLNLIFTKGSSGEFDPTLDPSRKGDANKTLRTQVKFEFVKDPRYRIYISASEEFLKKLTDMVKNHKTYYTVSLGLSELLADFSFVGVFDSHPIDVSDRADSVIPSRIIREIDIGKVQKIGKERIPVVMDSNRMVKMYEDVVFSVEGGAIYGKFTDLIKLGNGEVIYLWKQSQESTPIQESL
>NC_013799.1|WP_012963883.1|1129858_1130761_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MKSRREFLFIYDVSWANPNGDTMDENKPRIDEETGINYVTDVRLKRTVRDQLAEMGHEVFIKEERTDDGNLKTKESIFAKYGNDYNQVLEKCIDIRLFGGTFAIKNQQRCFTGPVQFKFGKSLHRVKMEFVKGTTVMPSAEQKAQGTMTEMYVVPYSLIVFYGIANENAAKETKLKDEDIDIMLKALWVGHKSSTDVISRSKFGHEPRLLIEIIYKEGTLTHMGELDKLVRINTDKRDEEIRDIEEVEIDLSRLKEKVQKYKDKIEKVNYIINDRIRIEPSLKEVFSGIAIEEFKWAKEV
>NC_013799.1|WP_012963884.1|1130744_1132487_-|TIGR02556-family-CRISPR-associated-protein
MLKAIRDIGRDIGELFGGVKLYDEVEKADRVLVLEFDEKGEFVKTDLEDFFEGKQEKYLYKKAKGSNPPTLTPTIILQRGKKKPDDKKSPVMRTLDNLEKVLNKIQFEKIARPTLDKKKLEEEIYRITEIIPAKEKILLTIKIGGKYVGEIEDFIKALKKELEEEGRESRGTGICSVCLQEKEVSGDIAPFKFYTIDKPGYITGGFKKEIAFKNFPLCYECRDYIKRGREEILEKKLKFKIGGVITYYLIPEFILGRDKIKKETFDILFPRNPEVRKIMLSSREHKSLMADEEEILEILSDERDVLTLNFLFLESELSAERILLLIQDVYPSRLRELFEAKRKVEKLFSSNGFSYTFNYYTIYKFFSKSDSTKKEPDLRKYFLEVLDKTFRGVKIDEKFLLNFLMKGIRDAIKKEEGYKNLIKDAFSVFVFVKLTTKEVDMEVKDVNSLEEFLESLPTLNNDLKKGLFLLGALTERLLRVQESERGSKPFLKKLKGLKMNENDLKGLLPEVRNKLEEYDKFRAGEMKLFNLTSEYFSKAPAVWNMSIEELNFYFSLGMGMFDKAAGYIYSKKEVSNEEQA
>NC_013799.1|WP_012963885.1|1132470_1133208_-|CRISPR-associated-endoribonuclease-Cas6
MILKIKLTGEGLIRLPKSYNHLLQAFFYKNTDPVLSKFLHEIGFVYNRRRFKLFTFSKIIGKLASRQGNLVFFEPQITVYFASPLMDIVSSAVNVFLKRENLFLGENRLRLESVELIKPTVREDVNVRCLSPITVYRTPEGETKKQFFSPWQEEFYELIKNNLIKKYQLIYGKSYKEELELKPLRISQRYKKKIVYKGSLIEAWEGYYNIRGSTQIVKLALEAGLGAKNPQGFGMVEVVDSVEGD
>NC_013799.1|WP_012963886.1|1133260_1134934_+|carbamoyl-phosphate-synthase-large-subunit
MPKRSDIKKILIIGSGPIVIGQAAEFDYSGTQACRALKEEGYSVVLVNSNPATIMTDPSVADRTYIEPLTVEVLEEIIKAERPDALLPTLGGQTALNLAVKLYEEGILERYGVELIGASYQAIKKGEDRELFRESMKKIGLKVPESAVVSSLEEGMSVIKSIGFPTILRPAFTLGGTGGAIAYNIEEFKEKLEVALKTSPIHQVLMDKSLIGWKEFEFEVIRDSKDNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDACIEVMREVGVDTGGSNIQFAVNPENGDFYVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNDITKHTPASFEPSIDYVVVKIPRFDFAKFPQTDRTLTTMMKSVGEVMAIGRTFKEAFLKAIRSLEIDTYGLLHPSFDHVSDDVLVRNLRIPNPERIWYIASAFRRGYSVDEVYHYTKVDRWFLYQIKQIVDFESTLAQGVLDEEKLRQAKELGYSDFEIAKLVGKREEEVRALRESLRVLPAFKGVDTCAGEFVAYTPYYYSTYEKPYYTMDGQEILDQD
>NC_013799.1|WP_012963887.1|1134938_1136648_-|proline--tRNA-ligase
MRWSTYFWYTSKEEPADAEAPSHKYLLKGGFIKQVASGIYAFTPAGYRVLKKIENIVRKEMDRSGAQELLLTVLNPAELWRETGRWDLYGRELFTLKDRHGRDYCLGPTHEEEITDMVRTFVNSYRQLPFILYQIQVKFRDEKRPRFGLIRGREFIMKDAYSFDTDEFSALMSYETMKFAYERIFKKLRLKTLMVEASVGAIGGMSSHEFVILTDYGEARVAYCESCGYSANAEIVKLNKGKEEEEEERQLTRVHTPNTRTIEELSSFLKVPPRKILKSVLYIVNGEPLLVVIRGDREIDENKLEALLNTENFRLATDEEVYALFKTQRGYIGPFNIPKDVRVIWDNSVYGIKNAVVAFNEPDYHYINANPGRDFSYGEFFDVAQVVEKDPCPKCGAPLKVSKGLELGHIFLLGTRYSLPMKAFYKDQQGEDKPIYMGCYGIGISRCMSAIVEQYSDELGIKWPTVVAPFELNVICLNPSDAEQKTVAEKIYYQAQEMGLDVIYDDREASAGFKFADADLCGFPYRIVVGKKTKEGKVELQKRHTGEKLDVPIEDAVRIVKEFVDKDKE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013799_1	1.27\|1124318\|37\|NC_013799\|CRISPRCasFinder,CRT,PILER-CR	1124318-1124354	37	NC_013799.1	568044-568080	0	1.0

1. spacer 1.27|1124318|37|NC_013799|CRISPRCasFinder,CRT,PILER-CR matches to position: 568044-568080, mismatch: 0, identity: 1.0

cataggcattgacgaaggggatatctactttaccgcc	CRISPR spacer
cataggcattgacgaaggggatatctactttaccgcc	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

773718 : 784872

Bacillus_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012963475.1\|773718_775608_+	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	6.6e-27	24.8
WP_012963476.1\|775618_776797_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.8e-11	25.5
WP_012963477.1\|776761_778027_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_012963478.1\|778293_779481_-	class I SAM-dependent methyltransferase	A0A2K9L4K8	Tupanvirus	8.3e-52	35.5
WP_012963479.1\|779578_780220_+	hypothetical protein	NA	NA	NA	NA
WP_012963480.1\|780254_781097_-	deoxyribonuclease IV	A0A2L2DJK8	Acanthamoeba_polyphaga_mimivirus	8.0e-25	28.9
WP_012963481.1\|781084_782080_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	G3MA01	Bacillus_virus	1.1e-20	26.9
WP_012963482.1\|782103_784872_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	5.0e-92	27.5

DBSCAN-SWA_2

1150735 : 1160162

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012963900.1\|1150735_1152394_+	ATP-binding protein	A0A139ZPI2	Marinitoga_camini_virus	8.0e-37	26.6
WP_012963901.1\|1152365_1153556_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	2.1e-18	30.9
WP_012963902.1\|1153539_1154196_-	7-carboxy-7-deazaguanine synthase QueE	A0A1B0Z0A9	Vibrio_phage	1.1e-18	33.5
WP_012963903.1\|1154159_1156400_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.3e-26	25.5
WP_012963904.1\|1156409_1157018_-	lipoate--protein ligase	NA	NA	NA	NA
WP_012963905.1\|1157014_1158019_-	biotin synthase BioB	NA	NA	NA	NA
WP_012963906.1\|1158038_1158689_-	hypothetical protein	NA	NA	NA	NA
WP_012963907.1\|1158691_1159360_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.7e-43	45.9
WP_012963908.1\|1159361_1160162_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.8e-11	24.6

DBSCAN-SWA_3

1452973 : 1459162

Bacillus_virus(28.57%)