CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_012523	Rhodococcus opacus B4 plasmid pKNR, complete sequence	0 crisprs	NA	0	0
NC_006969	Rhodococcus opacus B4 plasmid pKNR01, complete sequence	1 crisprs	NA	1	0
NC_006970	Rhodococcus opacus B4 plasmid pKNR02, complete sequence	0 crisprs	NA	0	0
NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	1 crisprs	DEDDh,csf1gr8,csf4gr11,csf2gr7,csf3gr5,RT,csa3	1	3
NC_012522	Rhodococcus opacus B4, complete genome	3 crisprs	csa3,cas14j,RT,WYL,cas4,DEDDh,Cas9_archaeal,DinG,casR,Cas14u_CAS-V,cas3,c2c9_V-U4	0	2
NC_012521	Rhodococcus opacus B4 plasmid pROB02, complete sequence	0 crisprs	cas14j,RT	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_012520_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012520_1

173720-173827

Orphan

Consensus_repeat	Method
ATCGGGTACCTCCGGGCCGGTCTGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012520_1

>merge|NC_012520|1|173720-173827|CRISPRCasFinder
ATCGGGTACCTCCGGGCCGGTCTGATCGCCCTGCTGAATGTTGTCGTTGTCGACGGCGCCGGGGGTATCGCATTCCGGTGTATCGGGTACCTCCGGGCCGGTCTGATC

>NC_012520|1|1|173720-173827|CRISPRCasFinder
ATCGGGTACCTCCGGGCCGGTCTGATC	GCCCTGCTGAATGTTGTCGTTGTCGACGGCGCCGGGGGTATCGCATTCCGGTGT
ATCGGGTACCTCCGGGCCGGTCTGATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012520.1\|WP_007296113.1\|180164_180839_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_012520.1\|WP_043827297.1\|162746_163943_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_012520.1\|WP_148222544.1\|164174_165236_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_012520.1\|WP_012686833.1\|169629_169995_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|376809
NC_012520.1\|WP_007296112.1\|180846_181332_-\|hypothetical-protein	unknown	unknown	unknown
NC_012520.1\|WP_012686828.1\|159370_160132_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227049
NC_012520.1\|WP_012686834.1\|169991_170516_-\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|376809
NC_012520.1\|WP_012686759.1\|165232_167569_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_012520.1\|WP_007296117.1\|176793_177552_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NC_012520.1\|WP_039950588.1\|183918_184296_-\|CD225/dispanin-family-protein	unknown	unknown	gnl\|CDD\|377375
NC_012520.1\|WP_043827275.1\|158696_159059_-\|CD225/dispanin-family-protein	unknown	unknown	gnl\|CDD\|377375
NC_012520.1\|WP_007296124.1\|169068_169605_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_012520.1\|WP_007296116.1\|177548_178232_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_012520.1\|WP_148222648.1\|160052_160940_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NC_012520.1\|WP_007296109.1\|181898_183188_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227049
NC_012520.1\|WP_193384911.1\|184778_185675_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227049
NC_012520.1\|WP_007296114.1\|179121_180054_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NC_012520.1\|WP_158306528.1\|181616_181778_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227049
NC_012520.1\|WP_012686836.1\|172191_173628_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_012520.1\|WP_007296115.1\|178236_178854_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_012520.1\|WP_007296113.1\|180164_180839_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.93997e-83
NC_012520.1\|WP_043827297.1\|162746_163943_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.43452e-94
NC_012520.1\|WP_148222544.1\|164174_165236_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.42233e-29
NC_012520.1\|WP_012686833.1\|169629_169995_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	3.05024e-25
NC_012520.1\|WP_012686828.1\|159370_160132_-\|membrane-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	3.43794e-82
NC_012520.1\|WP_012686834.1\|169991_170516_-\|CrcB-family-protein	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	1.74096e-29
NC_012520.1\|WP_012686759.1\|165232_167569_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.35686e-10
NC_012520.1\|WP_007296117.1\|176793_177552_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.80497e-76
NC_012520.1\|WP_039950588.1\|183918_184296_-\|CD225/dispanin-family-protein	gnl\|CDD\|377375	pfam04505, CD225, Interferon-induced transmembrane protein. This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.	1.92617e-17
NC_012520.1\|WP_043827275.1\|158696_159059_-\|CD225/dispanin-family-protein	gnl\|CDD\|377375	pfam04505, CD225, Interferon-induced transmembrane protein. This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression.	2.44179e-14
NC_012520.1\|WP_007296124.1\|169068_169605_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.79649e-20
NC_012520.1\|WP_007296116.1\|177548_178232_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.58228e-80
NC_012520.1\|WP_148222648.1\|160052_160940_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	4.52975e-50
NC_012520.1\|WP_193384911.1\|184778_185675_+\|hypothetical-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	9.44074e-83
NC_012520.1\|WP_007296114.1\|179121_180054_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.25612e-35
NC_012520.1\|WP_158306528.1\|181616_181778_-\|hypothetical-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	2.56027e-09
NC_012520.1\|WP_012686836.1\|172191_173628_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.89834e-52
NC_012520.1\|WP_007296109.1\|181898_183188_-\|hypothetical-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	2.63706e-73

>NC_012520.1|WP_012686836.1|172191_173628_-|HAMP-domain-containing-histidine-kinase
MEPMDGIWPLLHPRRWGLRIRSAIIAGVVVAVAVGFAAIALTLVLYRSMISASDDAAAARIQEVSAQLRLDTPDELDAATVSVNPRVTLVQVIDPQGRVVRSSAAGPTEPVTAVRPPEGALVHGARPAPRTDGLRVSAYTTTGVGGRYTVVVATSVENIENTIKTVAVLVALGAPFIVAVAALATYALIGRSLRSVEKIRTRVAAISSSDLAERVPVPTQHDEIAALAETMNAMLSRIESGQHAQRRFVADASHELRSPLSTVTTALEIGRDRPELLDTALVEHTLLPEAARMHHLIDDLLLLARADEHGLPLRIVDVDIDDVVASEVHRKRAEGGATFSCVLEPVQVRGDATQISRVVRNLVDNAARYATTTVRVRVSSDSVTARIEVSDDGPGIPETERDRVFERFFRLQRDRARGSGGSGLGLAIVAEIVTAHHGTVHIDTNPDGGATAIVHLPVRGTTPHSTKKPELPEPGYTD
>NC_012520.1|WP_012686834.1|169991_170516_-|CrcB-family-protein
MAPFPFRGRSVPVDGRRDPNPTLPVDPDTAPRTPGPLHVRPAAIAAVGGGGLLGAPLRYQLGVWFPQAAGGWPVTTFVINVAGAFLLGLVLEALTRLGPDTAWRQRVRLGVGTGVLGSFTTYSTLAVDADLLLRGHQWWAAGSYAAGTVLAGMVATIAGIAVGEQVRSRREEQR
>NC_012520.1|WP_012686833.1|169629_169995_-|fluoride-efflux-transporter-CrcB
MMVWWIACAGSVGAIARFVVDGAIKHRRSVEFPWATAAINVTGSLLLGFVVGLVLFHGVPREVQLIVGVGFCGGYTTFSTASFETVRLIHRGRYAAGVTNAVGTLLVTVAAGAAGLALAGI
>NC_012520.1|WP_007296124.1|169068_169605_-|universal-stress-protein
MTQNNHNHPAPRETLRDWRTPLRVDGPPAPTPAVCHLVVGFDRHPASHAALTYAMDLAGRLTAFVHVAHIVDIDDIPIEPDRDDWEQRFADAVEQERTEASAMLAALPGNWAYYSREGNPAQLLTTIAEANDALMIIIGTSRGGAMSLMERFLGESVSSKLVHHAHRPVLLVPVPPGA
>NC_012520.1|WP_012686759.1|165232_167569_+|site-specific-integrase
MTAAVRAVGEADATWPASTFPVSLERYDRREELTDAERRALRDLSPKALRRNRARGIPRRTATHWTALVRLVEPLDTARAGLHHGDDARFRRAGAHAAAIILQNCADTGRSYWAWTSEDWAQLCGSSAEAFVAARELPTETTVRPFLVALAYLLGSFDAFQLLGTFNRLHLARLVFGAEAIEESMRQASAVLDQWGYRGVFIGKHRLRGGLSQALLINRSSRLEDLDTAAFDRLRVHPATNDHQGEMLYALQRAVAALGHCDPPVRTGDNPYAVIEGTTDSWANWVARWHDTSTLTPRVRRTIRTILAKAGRWLAAEHPEITEPGQWTRQTSAAWVAAVDRMTVGDYVQRRDHLRARTGDPISPRTKAHILMATRTFFRDCQEWEWIDRRFDPARALALPRSVSALIGTNPRVIADDVWAKLLWAGLNLDSSDLPGNSAHTYYPMELIRAITLTWLFGGLRSDELSRLRVGCVRWQHDGQPIAADSPDVLAEDAVCLLEVPVHKTGTAFTKPVDPLLGQALEAWQALRPPQPKTLDRKTSEQVDMLFAFRAHPVAKNYINRTIIPALCAKAGVPSSDVRGNITSHRARSTIATQLYNAKEPMTLFELQAWLGHRTPNTTQHYAKITPNTLSKAYNEAGYFARNVRTIEVLVDRDAVTSGGAATGQPWQHYDLGHGWCSYTFFEQCQHRMACARCDFYTPKDSSKAQLLEASGNLQRMLTSIPLTDDERAAVDDGHTAVAALLERLTDLPTPAGPTPREIGTSPTVTLLPIVQVRHGEP
>NC_012520.1|WP_148222544.1|164174_165236_+|site-specific-integrase
MTVSMILEEKWPVLCRHERAAEWLQIWTDLGRAPRTIDAYARGLAEYLLVCEREGVDPVVATRAQIALFVRDLRTRPSRRGTNVVALDSGSGLANATLQQRLVPVRLFYDFLVEEGVRESNPVGRGRYTPGRHFGGQPRPLVPRMVKLPWIPGEAEWLQLLDVFRLEPIRNRLMLALAYDSALRREELCSLRTDDLDPAHRMLRVRPETTKTRRGRVVPYSAATGVLLSGYLAHRAGISRARGPLFLSESRRNFGEPLSLWSWSKVVRRVALAADVPQFSTHTTRHLCLTDLARMGWELHAIATFAGHRSTESTLTYIHLSGRDLAEKLNRAMTHLHAQRISMLTAPDGTGPA
>NC_012520.1|WP_043827297.1|162746_163943_+|IS30-family-transposase
MPPIELTPVSGRYLSFTEREDIALLRAKGMSMRDIADRIGRSPSTISRELRRNAATRNGKLTYRASTAQWKADLAARRPKPAKLAEHDRLREYVQDKLSGVIRADDGTVVSGPDAAWIGRNKPRRGDRRWATAWSPEQISNRLPIDYPEDPTMRISPEAIYQSLYIEGRGGLERELVACLRTGRALRKPRARARKQRTGFITEEVTISARPEEVESRKTPGHWEGDLIIGLTRSAIGTLVERTSRYTTLLHLPRLKGYGTAAMVKNGPALSGYGSESVRDALAATLSPLPEHLRRSVTWDRGKELARHAELTASTGIRVYFCDPYSPWQRGTNENTNGLLRQYFPKGTDLSRYKFRELQAVADALNNRPRKVHGWRTPAEVFAEQVHSSSRHGVATTG
>NC_012520.1|WP_148222648.1|160052_160940_-|DedA-family-protein
MGILDVPTLLGALGLLGVLGAVFVESGLLVGFFLPGDSLLFTAGVFAAQLQPFAPLWVPVIAIPVAAILGDQVGYLIGRRVGPAVFDSPSATRLGPKQLEQSRRFFDRYGPRTVLLARFVPVARTIAPVMAGASGMRYRTFVTYNVIGGVLWGTGVPVLGYLLGGIPIVRNHIEVILIAVVVVSLVPLLINAVRTRRRRDSVGAAAHNHPGRVGEPRRHPSVDQFDLHHPTSTEPWGHRRCMNDQHSCCRTTHRASVPVTVAAHSDWSNHEETPPDHRHLLGDEDRRHHARRNRW
>NC_012520.1|WP_012686828.1|159370_160132_-|membrane-protein
MKKLPQITAIFWVMKIAATTLGETGGDLLAQTLNIGYAAASVLFIGLFLVSLVTQLKAKTFHPALYWTVIVATSTAGTTMSDFLNRSAGLGYAKGALILITCLACVFAIWSRFGDTFDVERICTFRGELLYWTAILFSNTLGTSLGDFLADSSGLGFAGGALLIGTVMALILGAHYFTTSSGTVLFWAAFVLTRPLGATVGDLFSKPHDKGGLALGTVGSSAVLAVILLALIVYTHIRHQETVADREPVHERS
>NC_012520.1|WP_043827275.1|158696_159059_-|CD225/dispanin-family-protein
MHTCRTGRAANEPPAKRGADDPAEPRPSSNAGWAVASLVFFWPLAFSAFNHAFDVYPRWASGDVEGAVDASRRVRRLGQLSLWIAGGLLLLAVILYTILAIVLIAQGGDGDHEWGREMRG
>NC_012520.1|WP_007296117.1|176793_177552_-|ATP-binding-cassette-domain-containing-protein
MTGNGTRAAGEAPAPRVVVEGTALGRTYGAGPNAVIALREASFELPGSARIALMGPSGSGKTTLLHLIAGLDTPTTGSLRWPALPDLRRGRAASVGVVFQGPSLLPALNVIENVALPLLFAGQSADRARARARRALEVLSIGDLADKVPDELSGGQAQRVAIARVLAARPALILADEPTGQLDHDTARTTLSVLLDTAEAIDAAVLVSTHDPVVAGLLTGRWTMRDGRLDTGARSGTEPPGLGPPETGGGAR
>NC_012520.1|WP_007296116.1|177548_178232_-|ABC-transporter-ATP-binding-protein
MSTGSPSGPPALRARTLYRFYRAGEEETLALQGVSLTVGRGEFVAVVGPSGSGKSTLLACLAGMDDPDGGSVHIDGRRISHQPEPVRARIRARHVGMLFQNANLLEHLTVAENLTLVRGLARRRTRTSGAALLDSLAVGHRAPAYPSQLSGGELARAGLAIALANEPTVLIADEPTGELDSVTESGVLDLLAAAAEGGTAIVVASHSPAVAVAAARVITLEDGRVRR
>NC_012520.1|WP_007296115.1|178236_178854_-|hypothetical-protein
MKHIGNRAGTALRTGLLAVVLVMVTVSCSQNPPPISPGQSTAPNATAPESNPAGDIPDNQVYVPFTPAGDRFTISVPEGWSRSTAGTETVFTDKYNTVRVQAGDRAAAPTVESVISQELPGIAAGTPGYRAGTVTAVQRRAGQAVLITYQAASAPNPVTGKSVTEAVERYQFWHNGTEVVVTLSGPQGTDNVDPWRTITDSLQWP
>NC_012520.1|WP_007296114.1|179121_180054_-|phosphatase-PAP2-family-protein
MRDAIDLVINEVRTEAATAEIAIWMLTVGVLAYTVALGAERWNRRRGDSTVTTVCGWGAVRVAALLLMFTLLAVQVRLSGWVTGADTATLDWFVAHRSPGVTAAAVVITDAASPVGVALVAVVTAALVSWRRRSWEPGVLVVGIVAVAAAASTIVKMIVARSRPPTASQLVTETDWSFPSGHVTGIVALAGALLIVTGAGLPGRARGALAGTLAVLVVVVVAATRLYLGVHWLTDVLGGALLGGAVVAAGSCAVTALAARRPPGRAAEVTGAPAVPISAVQISGIEDGRPSDTPPMPHPVADEHRPISTG
>NC_012520.1|WP_007296113.1|180164_180839_+|response-regulator-transcription-factor
MRILLVEDEARLAETVRRGLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIMLPGMHGYQILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGAPERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWDSNYDGDDNVVEVYIGYLRRKIDAPFGMATIETVRGVGYRLLDAQ
>NC_012520.1|WP_007296112.1|180846_181332_-|hypothetical-protein
MNHIARFVEEVVEVFHSRIVDEGKLGAFVVLASFLVSFVGVRVITHAVRRGSRFVRNVRVGGTHVHHLVPGIVLLLVTGYLAFAFGYGDHPVVAALFGVGAALTLDEFALWLNLRDVYWERAGRRSVHVVLSAAATGALVVIGLDFWEAVLRAFARLIQRV
>NC_012520.1|WP_158306528.1|181616_181778_-|hypothetical-protein
MVGTLIPDNPDRSLEATTMIFGIALIAAFVLGYASERTLSIHSIDTTGREGFY
>NC_012520.1|WP_007296109.1|181898_183188_-|hypothetical-protein
MFSHVALRSDVVDEATRSETIKAQRAMLSKVPEITVWFWVIKILCTTVGESFADWINMTLGFGLNTTALTFTVILAAVLGWQLRLSRYEPFVYWLTVVVLSVTGTLYTDILTDVLGIPLALSTSVFAAALTIVFAVWFVRERTLSIHSIVTVPRELFYWLAVLITFALGTAAGDWTLDLTGWGPGVSVLLPAGLIVLIVIGWRLGANAVLSFWLAYILTRPLGANLGDWLASPSTDHGLGLGTALTSAIFLTAILATVVYLTLTRSDVIEEHEQTHTTTITTHPTRERIMLGYYVAVAVATGALLIWAAGQPHATAASDEETGTTPVITTLTPGQVSAHFPPTEIAQFRTIAEDTLGKVQAGDQADATARIKDLETAWDDDETTLRPLDETTWTVLDGQIDSVLHALRASKPDTATETQTLTALLTALR
>NC_012520.1|WP_039950588.1|183918_184296_-|CD225/dispanin-family-protein
MVNPSSEPAPDERPTRTEPARDPTDGQSVRARPSSNAGWAVVSVLFFWPLAFSAFHHAFEVYPRWAEGDLDGAEYASRRVRKLGQLSLWIFGGLLLLAIVLYAIAAIVLIANGGDGGEWHDHMRE
>NC_012520.1|WP_193384911.1|184778_185675_+|hypothetical-protein
MSSVAPGSHGPDHPSRYVMRKLPHITLTFWMLKIVATTFGETGGDLLAQTLEVGYLVSTLVFFAMFLVAVVVQLRARKFHPAIYWTVIALTSTAGTTLSDLMNRTGGIGYTKGAILLTSCLAVVFVVWWRSGQTLDVENVASFKGEVLYWIAILFSNSLGTSSGDFLADDLGIGFRDSAVVLSAVMLLLLAAHYFTRINAMLLFWIAFVLTRPLGATAGDSLSKPIEKGGLNWGTMWTSAALLAAMVGLIIYQAIHLRHHPLDPLPAPIDRRTGDRQKPNGALVPEDRAERVTAEGSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_012520_1	1.1\|173747\|54\|NC_012520\|CRISPRCasFinder	173747-173800	54	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	173747-173800	0	1.0

1. spacer 1.1|173747|54|NC_012520|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 0, identity: 1.0

gccctgctgaatgttgtcgttgtcgacggcgccgggggtatcgcattccggtgt	CRISPR spacer
gccctgctgaatgttgtcgttgtcgacggcgccgggggtatcgcattccggtgt	Protospacer
******************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2146 : 77304

Gordonia_phage(41.67%)

transposase,protease,integrase

attL 41650:41709|attR 56471:57922

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148222641.1\|2146_3429_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	3.6e-154	81.8
WP_012686732.1\|5293_5890_-	hypothetical protein	NA	NA	NA	NA
WP_158306526.1\|5859_6021_-	hypothetical protein	NA	NA	NA	NA
WP_050785255.1\|6017_6602_-	hypothetical protein	NA	NA	NA	NA
WP_012686734.1\|6653_7385_-	hypothetical protein	NA	NA	NA	NA
WP_012686735.1\|7384_12760_-	telomere-binding protein	A0A2I6UGE7	Salinibacter_virus	3.1e-13	31.7
WP_012686736.1\|12951_13209_-	hypothetical protein	NA	NA	NA	NA
WP_005574273.1\|14405_15374_-	ParA family protein	H7BUL8	unidentified_phage	7.5e-11	31.5
WP_012686738.1\|16288_16957_-	hypothetical protein	NA	NA	NA	NA
WP_043827244.1\|17654_18044_+	hypothetical protein	NA	NA	NA	NA
WP_043827246.1\|19205_19556_-	hypothetical protein	NA	NA	NA	NA
WP_012686741.1\|19737_21795_-	cutinase family protein	A0A166Y6Q9	Gordonia_phage	2.3e-09	30.7
WP_012686742.1\|21811_22075_-	hypothetical protein	NA	NA	NA	NA
WP_012686743.1\|22074_22911_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012686744.1\|23246_23510_+	hypothetical protein	NA	NA	NA	NA
WP_012686745.1\|23506_24688_+	conjugal transfer protein	NA	NA	NA	NA
WP_012686746.1\|24694_25021_+	hypothetical protein	NA	NA	NA	NA
WP_012686747.1\|25181_25802_+	hypothetical protein	NA	NA	NA	NA
WP_012686748.1\|25816_28327_+	ATP-binding protein	V5UQ42	Mycobacterium_phage	1.3e-38	24.3
WP_012686749.1\|28323_30603_+	hypothetical protein	NA	NA	NA	NA
WP_012686750.1\|30602_32255_+	M23 family metallopeptidase	A0A1J0MBM2	Mycobacterium_phage	1.3e-26	52.0
WP_012686751.1\|32439_32802_-	hypothetical protein	NA	NA	NA	NA
WP_043827368.1\|32798_33275_-	hypothetical protein	NA	NA	NA	NA
WP_012686754.1\|35588_37943_+	ATPase AAA	J9PQU2	Bacillus_phage	1.3e-08	23.9
WP_012686755.1\|38042_39617_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012686756.1\|40097_40610_+	hypothetical protein	NA	NA	NA	NA
41650:41709	attL	NA	NA	NA	NA
WP_158306527.1\|41657_43250_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-40	32.5
WP_012686759.1\|43286_45623_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_148222544.1\|45619_46681_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_050785259.1\|50695_51163_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012686767.1\|52902_53235_+	hypothetical protein	NA	NA	NA	NA
WP_148222677.1\|53572_53983_+	hypothetical protein	NA	NA	NA	NA
WP_043827372.1\|54734_54989_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	1.1e-35	79.5
WP_043827297.1\|55325_56522_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.3e-40	32.5
WP_012686770.1\|56418_57150_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	5.7e-96	83.1
WP_043827358.1\|57152_57470_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.6e-42	84.8
WP_012686771.1\|58037_58826_+	alpha/beta hydrolase	NA	NA	NA	NA
56471:57922	attR	NA	NA	NA	NA
WP_012686772.1\|58827_59610_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_007299976.1\|60415_61123_+	flagellar protein FlgA	NA	NA	NA	NA
WP_012686773.1\|61129_61948_+	hypothetical protein	NA	NA	NA	NA
WP_007299974.1\|61944_63591_+	type II/IV secretion system ATPase subunit	NA	NA	NA	NA
WP_005560293.1\|63590_64466_+	hypothetical protein	NA	NA	NA	NA
WP_007299973.1\|64462_65362_+	type II secretion system F family protein	NA	NA	NA	NA
WP_005560295.1\|65488_65746_+	hypothetical protein	NA	NA	NA	NA
WP_007299972.1\|65936_66353_+	hypothetical protein	NA	NA	NA	NA
WP_007299971.1\|66349_66802_+	hypothetical protein	NA	NA	NA	NA
WP_007299970.1\|66798_67260_+	pilus assembly protein	NA	NA	NA	NA
WP_007299969.1\|67256_70448_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_007299968.1\|70444_71005_+	hypothetical protein	NA	NA	NA	NA
WP_007299967.1\|71016_71655_+	hypothetical protein	NA	NA	NA	NA
WP_007299966.1\|72909_73299_+	hypothetical protein	NA	NA	NA	NA
WP_039952621.1\|73555_74383_+	hypothetical protein	NA	NA	NA	NA
WP_080512609.1\|74502_75102_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_007299963.1\|75210_77304_-\|transposase	ISAzo13-like element ISRop2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

114306 : 146758

Yellowstone_lake_phycodnavirus(20.0%)

transposase,integrase

attL 141902:141961|attR 164103:165231

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007300056.1\|114306_114951_+\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
WP_007300057.1\|114947_117089_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_007300058.1\|117085_118189_+	AAA family ATPase	NA	NA	NA	NA
WP_007300059.1\|118185_120531_+	TniQ family protein	NA	NA	NA	NA
WP_007300060.1\|120552_121005_-	hypothetical protein	NA	NA	NA	NA
WP_007300061.1\|121001_121598_-	hypothetical protein	NA	NA	NA	NA
WP_007300062.1\|121649_121916_-	hypothetical protein	NA	NA	NA	NA
WP_007300063.1\|122301_122478_+	hypothetical protein	NA	NA	NA	NA
WP_007300064.1\|122647_123799_-	thiamine pyrophosphate-binding protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	8.7e-06	23.8
WP_007300065.1\|123836_124547_-	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_007300066.1\|124543_124993_-	SRPBCC family protein	NA	NA	NA	NA
WP_007300067.1\|125065_125866_-	DUF5602 domain-containing protein	NA	NA	NA	NA
WP_007300068.1\|125903_126359_-	SRPBCC family protein	NA	NA	NA	NA
WP_193384907.1\|126472_127281_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	2.5e-20	33.0
WP_007300071.1\|127609_128140_+	ester cyclase	NA	NA	NA	NA
WP_007300072.1\|128261_129587_-	cytochrome P450	I6WI04	Cotesia_sesamiae_Mombasa_bracovirus	6.4e-21	23.4
WP_157234331.1\|130504_131116_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_012686806.1\|132970_134479_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_007300077.1\|134535_135105_+	ester cyclase	NA	NA	NA	NA
WP_007297545.1\|136105_137239_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_007297546.1\|138196_138658_+	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_007297548.1\|139519_140254_-	RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	1.5e-19	32.1
141902:141961	attL	NA	NA	NA	NA
WP_148222544.1\|141973_143035_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012686759.1\|143031_145368_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_043827297.1\|145561_146758_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.3e-40	32.5
164103:165231	attR	NA	NA	NA	NA

DBSCAN-SWA_3

411308 : 471661

Bacillus_phage(30.0%)

transposase,integrase

attL 444103:444162|attR 486374:487635

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085990379.1\|411308_412540_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.3e-31	33.7
WP_007297969.1\|412832_413066_-	hypothetical protein	NA	NA	NA	NA
WP_007297970.1\|413123_413588_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_007297971.1\|414119_415340_+	alkane 1-monooxygenase	NA	NA	NA	NA
WP_007297972.1\|415339_415525_+	rubredoxin	NA	NA	NA	NA
WP_007297973.1\|415526_415712_+	rubredoxin	NA	NA	NA	NA
WP_050785278.1\|415717_416971_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_050785266.1\|416963_417617_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_007297976.1\|418155_418434_-	hypothetical protein	NA	NA	NA	NA
WP_007297977.1\|418430_418634_-	hypothetical protein	NA	NA	NA	NA
WP_007297978.1\|419010_419535_+	hypothetical protein	NA	NA	NA	NA
WP_007297979.1\|419665_421129_+	CYTH and CHAD domain-containing protein	NA	NA	NA	NA
WP_157234259.1\|421224_421371_-	hypothetical protein	NA	NA	NA	NA
WP_007297980.1\|421833_422529_+	response regulator transcription factor	NA	NA	NA	NA
WP_012686944.1\|422602_423067_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_007297982.1\|423170_427049_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	7.9e-35	25.8
WP_039951565.1\|427209_427491_+	hypothetical protein	NA	NA	NA	NA
WP_007297984.1\|427515_427719_-	hypothetical protein	NA	NA	NA	NA
WP_007297985.1\|427951_428419_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_012686946.1\|428441_428645_-	hypothetical protein	NA	NA	NA	NA
WP_007297987.1\|428779_429427_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_007297988.1\|429519_429840_+	DUF3349 domain-containing protein	NA	NA	NA	NA
WP_007297989.1\|430150_431308_-	Helicase associated domain protein	NA	NA	NA	NA
WP_007297990.1\|431304_432045_-	response regulator transcription factor	W8CYM9	Bacillus_phage	8.3e-10	26.8
WP_007297991.1\|432165_433050_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-16	31.1
WP_007297992.1\|433096_434008_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_007297993.1\|434007_434988_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_007297994.1\|434989_435958_-	PstS family phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012686949.1\|436379_436628_-	hypothetical protein	NA	NA	NA	NA
WP_007297996.1\|436987_438016_+	potassium channel family protein	NA	NA	NA	NA
WP_148222652.1\|438202_439366_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	5.0e-09	30.4
WP_012686952.1\|439362_440265_+	hypothetical protein	NA	NA	NA	NA
WP_148222683.1\|440252_440549_+	hypothetical protein	NA	NA	NA	NA
WP_012686954.1\|440753_441983_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_148222641.1\|442767_444050_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	3.6e-154	81.8
444103:444162	attL	NA	NA	NA	NA
WP_007297102.1\|445828_446236_+	hypothetical protein	NA	NA	NA	NA
WP_007297100.1\|446714_446951_-	hypothetical protein	NA	NA	NA	NA
WP_007297099.1\|446947_447208_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_012686958.1\|447441_448404_+	recombinase family protein	A0A219YA40	Aeromonas_phage	1.7e-26	41.4
WP_148222654.1\|448407_450483_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007297093.1\|452349_453045_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.9e-14	30.9
WP_148222655.1\|453454_453673_+	hypothetical protein	NA	NA	NA	NA
WP_007297091.1\|454223_454658_-	hypothetical protein	NA	NA	NA	NA
WP_005241554.1\|456007_456373_+	gas vesicle structural protein GvpA	NA	NA	NA	NA
WP_007297088.1\|456369_457623_+	GvpL/GvpF family gas vesicle protein	NA	NA	NA	NA
WP_007297086.1\|457735_458017_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	3.1e-18	53.9
WP_080512620.1\|458913_459216_-	hypothetical protein	NA	NA	NA	NA
WP_007297084.1\|459260_460052_-	CoA ester lyase	NA	NA	NA	NA
WP_007297083.1\|460051_461323_-	CoA transferase	NA	NA	NA	NA
WP_012686963.1\|461528_462449_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012686964.1\|462455_463313_-	CoA ester lyase	NA	NA	NA	NA
WP_080512621.1\|463309_464428_-	PrpF, AcnD-accessory	NA	NA	NA	NA
WP_012686966.1\|464636_466031_-	SLC13 family permease	NA	NA	NA	NA
WP_007297078.1\|466453_467374_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007297077.1\|467546_468008_+	hypothetical protein	NA	NA	NA	NA
WP_007297076.1\|468004_468358_+	hypothetical protein	NA	NA	NA	NA
WP_148222684.1\|468981_469557_-	TIGR03086 family protein	NA	NA	NA	NA
WP_043827297.1\|470464_471661_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.3e-40	32.5
486374:487635	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_006969

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_006969_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_006969_1

2143-2234

Orphan

Consensus_repeat	Method
AATTATTTAAGAGTCTCGCTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_006969_1

>merge|NC_006969|1|2143-2234|CRISPRCasFinder
AATTATTTAAGAGTCTCGCTAGCAAACCATGTCAGGTGTTGCGGTGGGTTCCGGGTAAACCTCCACCCGAATTATTTAAGAGTCTCGCTAGC

>NC_006969|1|1|2143-2234|CRISPRCasFinder
AATTATTTAAGAGTCTCGCTAGC	AAACCATGTCAGGTGTTGCGGTGGGTTCCGGGTAAACCTCCACCCG
AATTATTTAAGAGTCTCGCTAGC

>NC_006969.2|WP_011266084.1|1177_2092_-|replication-initiation-protein
MTAAVDAWLDRWRFKYPHATDDYVRDGQWPQPRAEALTRRYIAARTPSIRLGLVLDVDDDQAQWAARNADLPDPTVMTINPATEHAHLWWLLESPVYTLQAARQGPLRLYDRVNQGLIASVVGADQGYAQQLTQNPIHPHWTTVWGPSDPYSLKGLAKALGDRFPAPPDYGRKTQVRTETGRNVELFDRTREWAYREIRKQNYPSITVWRQMVTDFTALTNFTLDANDGIGPMSRAEAEQIGKSVAHWTHRTFTAAEFSKIQARRGKVSSSAKTEAVRKNATAPRPKLKKVDRSALFAAAEGTD
>NC_006969.2|WP_011266083.1|911_1178_-|sporulation-transcriptional-regulator-SpoIIID
MGAAERVMRRTQTAQELADKFGVSKSTIKRLVAEDRGDYIARAQERRKKAVELRKQGLKYRQIADQMNISTGSVGTLIRQARIHGEMD
>NC_006969.2|WP_011266082.1|366_648_-|hypothetical-protein
MKPRDGRRDDAQFDLFNHLRKWTYSAHQSFEGDGQSWLDEVTEVAEEFHDKLLSCRLDPMPTQLIHDLAADCAVWTWETMHTGIVTSAENSSS
>NC_006969.2|WP_148222715.1|2766_3072_-|hypothetical-protein
MSDELRWPALSAWIRAWDPFVDDTGLREWARGLSRAVSHIDPQISWSPESDTVTAPESRAAADLHRCLWEVIGQFAHLPDAVSAHQVPPAQRSAPNRAPTT
>NC_006969.2|WP_011266085.1|3256_3841_+|hypothetical-protein
MTTPRCPRCDREIESNTSAVHGRGRPRKWCSDECRKLASEERRAAERGIVAVELRERVVEVEKVVHRPATTAASIDRVLDDDQALQKLLNTLRHRIKEGTYRPNRDPGTAMWMLQRLTAPVADLLAQIHSSAGTTPPMDPAQAVRTVLHSPRSCRAVLEGLERMARSGELDGGQHTATLIALDRLVARTRRQSR
>NC_006969.2|WP_011266086.1|3935_4118_+|hypothetical-protein
MMDLDAQVAVLRDQLNALGRQVREVTEAAGEQDKPDVVDALADVRMHLNDAAAVLGDVIV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_006969_1	1.1\|2166\|46\|NC_006969\|CRISPRCasFinder	2166-2211	46	NC_006969	Rhodococcus opacus B4 plasmid pKNR01, complete sequence	2166-2211	0	1.0

1. spacer 1.1|2166|46|NC_006969|CRISPRCasFinder matches to NC_006969 (Rhodococcus opacus B4 plasmid pKNR01, complete sequence) position: , mismatch: 0, identity: 1.0

aaaccatgtcaggtgttgcggtgggttccgggtaaacctccacccg	CRISPR spacer
aaaccatgtcaggtgttgcggtgggttccgggtaaacctccacccg	Protospacer
**********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_012522

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_012522_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012522_1

2893257-2893367

Orphan

Consensus_repeat	Method
ACAGCTACGAAGAGGTATGCGTAGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012522_1

>merge|NC_012522|1|2893257-2893367|CRISPRCasFinder
ACAGCTACGAAGAGGTATGCGTAGCGATCTGGGTCAACGCACCACACGCGTGGTGACCGCGGCGCACACCCGCACCGGTACCAGACAGCTACGAAGAGGTATGCGTAGCGA

>NC_012522|1|1|2893257-2893367|CRISPRCasFinder
ACAGCTACGAAGAGGTATGCGTAGCGA	TCTGGGTCAACGCACCACACGCGTGGTGACCGCGGCGCACACCCGCACCGGTACCAG
ACAGCTACGAAGAGGTATGCGTAGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012522.1\|WP_012689892.1\|2894835_2896200_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NC_012522.1\|WP_043826521.1\|2888708_2889329_-\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_012689889.1\|2892183_2892555_+\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_043824699.1\|2890530_2891073_+\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_043824704.1\|2893531_2894827_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925
NC_012522.1\|WP_012689894.1\|2897458_2898253_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|180591
NC_012522.1\|WP_012689895.1\|2898274_2899189_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NC_012522.1\|WP_012689885.1\|2889511_2890402_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_012522.1\|WP_012689881.1\|2886488_2887418_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_012522.1\|WP_012689897.1\|2899993_2901469_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143415
NC_012522.1\|WP_012689899.1\|2903120_2904341_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_012522.1\|WP_012689888.1\|2891680_2892142_+\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_012689896.1\|2899188_2899962_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NC_012522.1\|WP_012689880.1\|2884854_2886492_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226089
NC_012522.1\|WP_012689882.1\|2887426_2888131_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|375436
NC_012522.1\|WP_193384887.1\|2904410_2904887_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NC_012522.1\|WP_012689883.1\|2888179_2888560_-\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_012689887.1\|2891128_2891602_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176867
NC_012522.1\|WP_012689893.1\|2896196_2897462_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NC_012522.1\|WP_043824705.1\|2901660_2903079_+\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	unknown	unknown	gnl\|CDD\|274360

Protein	Function_ID	Function_description	E-value
NC_012522.1\|WP_012689892.1\|2894835_2896200_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	6.94008e-95
NC_012522.1\|WP_012689894.1\|2897458_2898253_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|180591	PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.	4.19434e-86
NC_012522.1\|WP_043824704.1\|2893531_2894827_+\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.06881e-128
NC_012522.1\|WP_012689885.1\|2889511_2890402_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.27864e-15
NC_012522.1\|WP_012689881.1\|2886488_2887418_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.44293e-83
NC_012522.1\|WP_012689897.1\|2899993_2901469_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143415	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.	0
NC_012522.1\|WP_012689899.1\|2903120_2904341_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	7.49117e-81
NC_012522.1\|WP_012689896.1\|2899188_2899962_+\|SDR-family-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.63666e-86
NC_012522.1\|WP_012689887.1\|2891128_2891602_-\|SRPBCC-family-protein	gnl\|CDD\|176867	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.42002e-56
NC_012522.1\|WP_012689880.1\|2884854_2886492_-\|ABC-transporter-permease	gnl\|CDD\|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	2.40324e-146
NC_012522.1\|WP_012689895.1\|2898274_2899189_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	3.14299e-36
NC_012522.1\|WP_193384887.1\|2904410_2904887_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	2.24168e-30
NC_012522.1\|WP_012689882.1\|2887426_2888131_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|375436	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in Rv1219c of Mycobacterium tuberculosis. Structural studies indicate that the helix alpha 10 of the C-terminal end of Rv1219c forms a long arm feature, a feature which is unique in Rv1219c compared to some other members of the TetR family. Furthermore, it has been shown that substrate binding occurs in the C-terminal regulatory domain of Rv1219c.	5.42087e-49
NC_012522.1\|WP_012689893.1\|2896196_2897462_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	7.66215e-126
NC_012522.1\|WP_043824705.1\|2901660_2903079_+\|wax-ester/triacylglycerol-synthase-family-O-acyltransferase	gnl\|CDD\|274360	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase. [Unknown function, Enzymes of unknown specificity].	7.70799e-151

>NC_012522.1|WP_012689889.1|2892183_2892555_+|hypothetical-protein
MRNLRRTAVAGAMIAGLLTAGTATASAAPFGSLGDGPDLVITQANISGVSACAVRVTNEGDGTAPGVTVHTPLVYPSTHLGTLAPGDSKIAQYFDCGFSERIFYFATTAGETNWADNFLYLEL
>NC_012522.1|WP_012689888.1|2891680_2892142_+|hypothetical-protein
MSLLTLGKSIALTGLALAGLLGAAAPAAADQTRDRWVNIPDTVTVAHGVACGGRIGGVTVSTDALPGLVYVRLNATFVGVSTTPGVLCSVFATLHWRNLGTGAEGSWSADVSGGVLDFPAEPWTHLETGSGRVEVTLTTDRPHLASATEINVY
>NC_012522.1|WP_012689887.1|2891128_2891602_-|SRPBCC-family-protein
MTEENGIPTVVTASRVIAAPARVIFELIADPAQQPRWDGNGNLAEAAPGQRVRAVGDVFTMTLTNAGIRDNHVVEFEEGSLIAWTPSEQGHPPPGHLWRWELDPLDENHVRVTHTYDWSRLTDPKRLQRARVTTSDWLLASADRLAELAEATDGPPA
>NC_012522.1|WP_043824699.1|2890530_2891073_+|hypothetical-protein
MSNQLGRRACAAALTAVGLGTAVAVGGGAVAHAQPAPPTSTTMTCSSANPLVWAPPFTWTVNASSGESLRPGGSALEPAILLSGGNELPTPPGGLIPSIGVNWYGTRVSVDWHNTTTGATGHSVSDEAAWQQKPGIPINRTWTGTGTVSFTVTVQTGAGWWFVNSQNAVCQGTISVVPGR
>NC_012522.1|WP_012689885.1|2889511_2890402_+|alpha/beta-hydrolase
MTSEGSIRIGSRTITYLEAGDPNGPLVLHNHGGPSSRLEAELFDPYAKANGLRFVCADRPGIGGSDLQPGRTFESWTDDLLLLADSFDADKFAVTGWSEGGPWALAAAAYLDPMRLVNVVCIAGGNYGTFGPNWAAKYLSSVDALGGRLALHFHPGFTLMYELLGMSATHFEDRYGQAIKKSACAADQEVLADEDVLTAFLAAGRECFHHGADGLVVDATMLYEAWPFDMTKVTRPVHFWQGSADTLVPEVINKTVADRTPGAVWHPISGGGHFIAVSHADDILALTANDLASASN
>NC_012522.1|WP_043826521.1|2888708_2889329_-|hypothetical-protein
MVQSRERRDVRRRGGRRSLAFLSIVLAGVLLAAGCGQQDTESGGESQQDQTTSETNLLPEGVVVALDGVQTYFPEIERQTATSENSTAAGAPDATRMVIYEGGDGRRVTISVDRYPSPDAASAAFEQAIDKSEVVPGFVALPAPAGVGDKAFAGSVTQGVDTHIGYGALAGAYVVGVTSAGYPATPENADKLAGLTRDAVEKATAA
>NC_012522.1|WP_012689883.1|2888179_2888560_-|hypothetical-protein
MTLHLPHLFPHEEPRQNTLLDLSALGADGSGLEDALRAVMDQPQLRLVGIRCPAGPGVVYDAIGLMERVRRDYGVILTELVVADADRVDLREAVDEALDEACARNRFPRPSVVFTGRPAVSALMKS
>NC_012522.1|WP_012689882.1|2887426_2888131_-|TetR-family-transcriptional-regulator
MRSTSAASGVPQPDMTTRARVRDAAITVFGNHGFGTGVRAIATAAGVSPGLVIHHFGSKDGLRAECDEHVLRIIREQKAEAISTPGPAGAMQALADIEQYAPLVAYIVRSFQAGGGLGESLFEHMVEDTEQYLALGVAAGRVRPSRNPKARARYLTLYNVGAMLLYLQMRADKEAPLDYATAIRDLATDVTLPALEMYTEGLLPDSSTLEAYLATEDGAAQAGAAPAEHTDSPD
>NC_012522.1|WP_012689881.1|2886488_2887418_-|ABC-transporter-ATP-binding-protein
MSAIIEVRNLVKTFGRTRALDGLDLEVGEGEVHGFLGPNGAGKSTTIRVLLGSLHSDSGEATVFGRDPWRDAVALHLDMAYVPGDVTLWPSLSGGETIDLLARMRGGLDETRKQDLIGRFDLDPRKKGRAYSKGNRQKVALVSAFSSEARLLLLDEPTSGLDPLMEQVFRECVAEARERGVTVLLSSHILSEVEALCERVTIIRSGRTVESGTLASMRHLSRTSITAELLGDPGDLSRIDGVADIQFDGSTLHCQVDSEHLGELIRVLGDTGVRSLVSKPPTLEELFLRHYEIDDGTTTSSDTVEKVRA
>NC_012522.1|WP_012689880.1|2884854_2886492_-|ABC-transporter-permease
MSTATVSRYRPVEPAPVSSSDFKGTLHFLRLFLRRDRIALPLWILIFAFAPALYVASIADIYTSDAQLAEFAATTAASPAQIAMYGPIFNSSLGSVGVWKAGIYYTLIGLVVILTVIRHTRAEEETGRAELLDSTSVGRYSGLTAALLLAGGASVVTGILCAAALLARNLPVGGSVAFGTSLACSGLVFTAVAAVAAQVSTGARVARGVALTVLGVAFAVRAVGDAGSGTLSWFSPLGWDLQIRPYADERWWVVVPSLVTAVVLTWAAYALLRRRDVGAGLIAERPGPTDASPALAGTLGLAWRMHRGTLAAWTAGLGLYGLLIGSAAKGIGGQVGDSETIRDIITRMGGSQSLEESFIGYAFTMLAIAAAAYAISASLRLYSEENAQRLEPVTAGSVGRVRWASSHILFALLGPAVAMIVAGVAAGLTYGASIGDVGGALPDVIGTALVQLPAIWMLAGVTVLLFGTVPRFTPVAWGVLVAFLLIFMVGSIAQFPQTVLDLEPFSHAPKLPGGQFAATPILWLLLITAALIVVGVAAFRRRDLR
>NC_012522.1|WP_043824704.1|2893531_2894827_+|MFS-transporter
MLDTTVTAPNTRRQLTPEVRKGLLGLGLGNALEWYDWMVFGLLSAFIGPNFFPSTDPLSATLNTLAVFAVGFAFRPLGGVMLGTLADRIGRRRVMLISISTMAVTTLIIAITPGYAHIGAWAGVILVACRIVQGVSTGIEAPLSTAHAVELVPAGREGLVAGVMSFYVNLGVLLASLVSFLCSLVIGGAAMGEWGWRIPFVIGAVFGIVVVYLRRALPETMRPEELSDNTTRTVWTGVRKHWLSVLAIIFVVGAAQAYNYAWNVGLPAAARSNFKEDPTAVFALTTALGVVLVIGSWVIGKLTDGKSMSRWFLWTRALAVPAVFLMLMYVQPGIGGFAVVLLGGSIVLVLNMTLYNVVSTSLMPKNCRGAGVSLGYGVGVALFGGTASYLLVWFQSVNANWIFPVYVAVLSVLSIVFYLLARRVNGIFVGK
>NC_012522.1|WP_012689892.1|2894835_2896200_+|FAD-dependent-oxidoreductase
MTTLDLRVTSRDLAAPVVNRSQVLVVGGGPAGVAAAVTAARSGADVTLLERYSSLGGLASGGMVLVLDDMINGQDITVTGIVSEYVERLQALGLAVVPPREDRTASTELWNKWGRYGTFDFHSHTNPKPICYAAAFDPDGWKRVSNDLVREAGVTLRLHTWFSRPIVDDGVVKGVVCETKSGPQAFLADVVIDTTGDIDVASRAGAAHVKDSYITTLVFRLGGVDTAAAERFEQENPKEARAVNRKIKRLLGGAWELWWLKTPLDGVVWCNAPHMSGFDGTDPGDLTAAEFAARDRITEAVEYVKEHLPGFADCYIVDVASQLGVRQTRLLEGEYVMTKEDVTTRRHFADSVARGRDYYYPYRSLLPKDVDQLLVAGRHYSATPDAQKMSREIPPCMAMGQAVGVAAAIAVRDDVTVRSVAAVDIQAGMRSHGADPGDIPSANATLDQEATVPA
>NC_012522.1|WP_012689893.1|2896196_2897462_+|CoA-transferase
MSITTEELNVTSADHSTRTFADDPAPAGPKLPLTGVKIVDFTQVYMGPSATQMLGDYGADIIKVERPGAGDIARNSFPDPDGQDNPIFLAINRNKRSISVDTRTEDGRAVLRTLMSDADVVVSNFRAGVMERMGFGYDELKKDNPGIIWASGTGFGTEGPYSHKGGQDAIAQAYSGVMWRRESDDAPPVVYPTTLCDYTTGMHLMQGILLALRAREQYGTGQKVEVTMYDSMLHMQMQEACMQLNRGYEVNWGAMPFTGVFPTTDGAVCMVGGFTADPLLHISRALGLDEDLTLRPEFSTKELQFDNKPALQAIFRERFATNTTEYWTARLEEEGLLNAPVNTLEQTLADEQTRINGMIVEAEHPSVGTVKMLNAPIRLSATPPSIRHSAPRLGEHNTEVLREHGFDDDVIARLVALGVLA
>NC_012522.1|WP_012689894.1|2897458_2898253_+|enoyl-CoA-hydratase/isomerase-family-protein
MTTNGDGVILTIDDGVATVTINRPHVLNAVDGPTTARLNDIWEQLERDNRIRAVVVTGAGPKAFCTGADMTASAVNRTGLEYWAELDANGFGGLSLRTTLDVPVIAKVNGYALGGGMEIVLGADIVVAADSARFGLTEPRVGRLALDGGIHQLVRRVPHTQAMGMLLTGRKADAAEMQAMGLVNEVVPAGELDAAVDRWLDQIRACAPTSLRAVKQMVTRTAHLTAAEARGLRLPALMAALDSKDSAEGVLAFQEKRAPVWSGA
>NC_012522.1|WP_012689895.1|2898274_2899189_+|dihydrodipicolinate-synthase-family-protein
MRESLEHGVWGVVATPFIGSTQDVDTDSLANLAEHYERIGAIGLTVLGVFGEAAALSTDERALVLETVTEASDLPLVVGVTALATRPVVDEIRAARAAAGERIRAFMVQANSADADVVTDHLQAVHRVTGAPIVVQDYPAASGVAIRPASLAAVVRRCEFVAAVKAEAPPTSVAIAELTAAVEVSVFGGLGGQGLLDELNSGAAGAMTGFSYPEALVACVRAWQSGGYEAAREVLQPFLPLVNFEQQARIALSVRKELLLQRGLIRDSAVRAPAAPFPEVLRDSLTTHLAEAAQAFDALTAGRI
>NC_012522.1|WP_012689896.1|2899188_2899962_+|SDR-family-oxidoreductase
MDLGIGGKTALVAASTGGLGLAVARALAAEGARVAITGRRRERAEQIASSLGGAIAIEADLSTPEGTATAVERTEAELGPVDIVVLNGPGPRPGAAATLGSDDLAAAFDILLRPHHALVSTVLPGMRERRWGRILAIGSSGVAAPLPNLAMSNTGRAALAGYLKTLAAEVALDCVTVNLLLPGRIATDRVAELDAAAAKRRGVTVTDIEIESRKTIPARRYGAPDEFGAAAAFLCSAPASYITGVALRCDGGLIRSL
>NC_012522.1|WP_012689897.1|2899993_2901469_+|aldehyde-dehydrogenase-family-protein
MTTTVTEPTGSHIRNEVPTAQHLVNGEWLGEADTARWNPARPNELAAYSPSGGTAEVDAAVAAAAAAQPAWAALPAPARGAILIKAANLLQERGSAVAADLVREEGKTLAEARGEVTRAVDVLRFFGSLGWAATGEVLPSGLPGTSITTRREPLGVFALITPWNFPIAIPAWKTAPALISGNTVVLKPAELTPLSATHLARALQDAGLPAGVFNVVHGKGRVVGDALARDPRVAGLSFTGSTTVGLGLQDILNSRRARVQLEMGGKNAVLVLDDARNAAQVVAAGAFGLTGQACTATSRVYVTPGIRDAFLEALVEEAARYVPGDGSADTTRMGAVVSRAQFEQDQEAVRSAVLRGATLRHGDYAGDTSAGFFFPATVLTDLPLDDPAVTDEIFGPVVAVLEVADYEAGLAAVNDSRYGLTAGICTDSLTRSTDFAARAQAGVVKINRPTAGLDLNVPFGGVKDSSTNTFREQGRSAVDFYTWGKTVYTGV
>NC_012522.1|WP_043824705.1|2901660_2903079_+|wax-ester/triacylglycerol-synthase-family-O-acyltransferase
MLFPMAPTDSLFLLGESREHPMHVGGLAVFTPAEGSSAADVRAMFDAALVGDRVAAPFRKRARRSVTSLGQWGWDTLRDDEVDLEHHVRRDALPQPGGMAELMTLVSRLHGTLLDRSRPLWEMHLIEGLADGRYAVYTKIHHALADGASAMRLLRDSMSEDPHRRNMPTPWQPRNPLSAVPDAGVAVTPGPGSALPAMAWDAARSAAGEVAGLLPAALGTVDRALHGKGGALSLTAPHTLFNVPISGARHVAARSFPIERIRLLAKHADATINDIVLTMCAGTLRAYLHTRDALPDNPLIAMVPVSLRAPETGTGDRAPGGNRVGVLMCNLATHLPDPAHRLETVRNCMNEGKAALQAMSPAQVLAMSALGAAPLGVEMFLGRRGPLRPPFNVVISNVAGPRTPLYWNGARLESLYPLSIPTTGQALNITCTSSDDQIVFGLTGCRRTVPDLHPMLDQLDAELDLLETAVGL
>NC_012522.1|WP_012689899.1|2903120_2904341_-|FAD-dependent-oxidoreductase
MSNVLIIGGGFAGVWAAASAARLRRDAGVPRTDLTITLVDAGDDHVLRPRLYEREPENKRCSLDGLLGPIGVERVAATITAIDTTTNQAHGITRTGDATSLSYDRLVLATGSQLVTPTIPGAQHLFDIDTLGSATYLDGHLRSLPARPDSEGRYTVVVIGAGFTGLEIATELTDRLREIAGDAPIRVILLDRGDVVGSGLGEGPRPAILEALDTLGVEVLLGVDVTSIDEHGVQLADGTRIAANTVIWTAGMQASPLTAHIPGERDRLGRLTVDAHLKVAGLADVFAAGDTAAAYAEPGHVVMQSCQHALPQGKFVGHNAVADLLGRDLVPFAPASYVTCLALGPAGAVFASGWDREVQMTGEEGAVVKKSINTVAIYPPVGDPEALLSLAVPDGTWRSAELAALT
>NC_012522.1|WP_193384887.1|2904410_2904887_-|Rrf2-family-transcriptional-regulator
MSRGVEWAMHVVLSLAWVDDDRPVSTAALARSYDLPAPYLNKQLQALVRAGILTSVPGAAGGFVLTRSAKHISVLDVVTAIEGAEEAFRCTEIRAQGVGADMPAGQLSMPCAVSMAMRKADLAWRRELAGQSVDDVRIEAERHAPGLADRMRQAYDRG

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Crispr_ID: NC_012522_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012522_2

6170929-6171023

Orphan

Consensus_repeat	Method
TACGGCCAGAGCGCCCCGCAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012522_2

>merge|NC_012522|2|6170929-6171023|CRISPRCasFinder
TACGGCCAGAGCGCCCCGCAGGGGTTGTACGGGCAGGGCCCGCAGCAGTCGTACGGACAGCAACCCCAGGGTTACGGCCAGAGCCCCCCGCAGGG

>NC_012522|2|2|6170929-6171023|CRISPRCasFinder
TACGGCCAGAGCGCCCCGCAGGG	GTTGTACGGGCAGGGCCCGCAGCAGTCGTACGGACAGCAACCCCAGGGT
TACGGCCAGAGCCCCCCGCAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012522.1\|WP_015889395.1\|6176155_6177022_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|380141
NC_012522.1\|WP_015889388.1\|6168723_6169626_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NC_012522.1\|WP_015889391.1\|6171747_6173178_+\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_043825462.1\|6165419_6167369_+\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_015889384.1\|6161564_6164048_+\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NC_012522.1\|WP_015889398.1\|6179484_6179796_+\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_015889385.1\|6164126_6165188_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_012522.1\|WP_015889394.1\|6175518_6175752_-\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_015889400.1\|6181335_6183309_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|227204
NC_012522.1\|WP_015889392.1\|6173233_6173914_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NC_012522.1\|WP_015889382.1\|6157781_6159434_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NC_012522.1\|WP_015889387.1\|6167538_6168708_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NC_012522.1\|WP_193384868.1\|6159503_6160958_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NC_012522.1\|WP_015889389.1\|6169686_6170313_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NC_012522.1\|WP_015889381.1\|6157000_6157780_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NC_012522.1\|WP_015889393.1\|6173906_6175463_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_012522.1\|WP_005238528.1\|6160994_6161291_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|236117
NC_012522.1\|WP_015889397.1\|6178319_6179285_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|224423
NC_012522.1\|WP_043825463.1\|6177227_6178319_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376559
NC_012522.1\|WP_015889399.1\|6179950_6181336_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224160

Protein	Function_ID	Function_description	E-value
NC_012522.1\|WP_015889388.1\|6168723_6169626_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NC_012522.1\|WP_015889395.1\|6176155_6177022_+\|DUF559-domain-containing-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	0.000116375
NC_012522.1\|WP_015889384.1\|6161564_6164048_+\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_012522.1\|WP_015889385.1\|6164126_6165188_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.09758e-40
NC_012522.1\|WP_015889400.1\|6181335_6183309_+\|VWA-domain-containing-protein	gnl\|CDD\|227204	COG4867, COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only].	0
NC_012522.1\|WP_015889392.1\|6173233_6173914_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	4.98992e-103
NC_012522.1\|WP_015889382.1\|6157781_6159434_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NC_012522.1\|WP_015889387.1\|6167538_6168708_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NC_012522.1\|WP_193384868.1\|6159503_6160958_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NC_012522.1\|WP_015889389.1\|6169686_6170313_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	1.06632e-53
NC_012522.1\|WP_015889381.1\|6157000_6157780_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	1.99921e-14
NC_012522.1\|WP_015889393.1\|6173906_6175463_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_012522.1\|WP_005238528.1\|6160994_6161291_-\|chorismate-mutase	gnl\|CDD\|236117	PRK07857, PRK07857, chorismate mutase.	7.1668e-41
NC_012522.1\|WP_015889397.1\|6178319_6179285_-\|alpha/beta-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	0.000641172
NC_012522.1\|WP_043825463.1\|6177227_6178319_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376559	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.	6.64206e-35
NC_012522.1\|WP_015889399.1\|6179950_6181336_+\|ATP-binding-protein	gnl\|CDD\|224160	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].	2.67386e-103

>NC_012522.1|WP_015889389.1|6169686_6170313_-|YigZ-family-protein
MPYTLAPRTADLTALTEVKHSRFIAALRRIEDTEAAQAFVQDRRSAYPDAGHHCSAFIVGNGPSDRVERANDDGEPGGTAGIPMLQVLKARDLVDVAVVVTRYFGGIKLGAGGLVRAYSGAVAAAVDAAPLVRRERRHLHTLAVGHAEAGRVESELRGRGVVVVDTTYAESAVLTLAARDSAELADLVAAVTSGTGTLDPAGEMWVDA
>NC_012522.1|WP_015889388.1|6168723_6169626_+|succinate--CoA-ligase-subunit-alpha
MAIFLTKDSKVIVQGITGGEGTKHTALMLKAGTQVVGGVNARKAGTTVTHDGGVELPVFGTVAEAIEKTGADVSIAFVPPAFAKDAIVEAIDAEIPLLVVITEGIPVQDSAYAWAYNVSKGNKTRIIGPNCPGIITPGESLVGITPANIAGSGPIGLVSKSGTLTYQMMFELRDFGFSTAIGIGGDPVIGTTHIDAIEAFEKDPETKVIVMIGEIGGDAEERAADYIKANVTKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAQAKKDALEAAGVKVGKTPSETAALAREILQSLTVQA
>NC_012522.1|WP_015889387.1|6167538_6168708_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MDLFEYQAKELFAKHEVPTSAGRVTDTVAGAREIAEEIGKPVMVKAQVKVGGRGKAGGVKYSADVDAAQANAEAILGLDIKGHVVKKLLVAEASDIAEEYYISFLLDRTNRTYLAMCSVEGGVEIEVTAEENPDALAKIPVDAVKGVDLAFARSIAEAGKLPAEVLDAAAVTIQKLWEVFIKEDALLVEVNPLVRTPNDEILALDGKVTLDENAAFRQPGHEAFEDKDATDPLELKAKENDLNYVKLDGEVGIIGNGAGLVMSTLDVVAYAGEKHGGVKPANFLDIGGGASAEVMANGLDVILNDAQVKSVFVNVFGGITACDAVANGIVGALKTLGDEANKPLVVRLDGNNVEEGRRILAEAAHPLVTVVGTMDEAADKAAELAFAAK
>NC_012522.1|WP_043825462.1|6165419_6167369_+|hypothetical-protein
MASSTRSPDGRRAEPERIPSSGGTGVTAVDEPDPVRARRGTVLAVLLSLVGGLGVASAPLLQAVHAVDGAASPSAIGAAAVSAAVFAVAAPVLAVPAVLARRTAVAGALLAGAGAVSVGAAVLDAQLWSDAIDANRLELFRPETAAELAAGPGAYAALAGHALIAFAGLLGMVAVHRASLMDGYGDARSSEQVGRATGARIGFLSSAVVVVAAAVLVGALFAPAFVSEDPVILVPTVVESDLAASAGAGILAAAVLIVVASALASISPPVASGALVGAGLAVLGVVGTRLVAGLAAGERIQPGPGAVWGTVGAGVLVLVGVCIPMIDRTRDSRILSALAASPTVSALGGPAKQGAVTPSAKGVAKAALRAEAAAARARIARWHVAAGATGIVTAVLAAAGALLPVLDIPGDTARPDVYATRVVLVAALVLAVGCVWLLLSEFASAVRPAVGVLWVTIPYSVAAVSQSVVLATDVPGIGAGIGAVLLWCAAVTAGVTGVLTWFAGSAEREEIDTSEEPSTSIAVLAVGGLGAVAAFVGLGLPLFHGTDARGDAYAPASFAEVPWNLDVWGRVLLGVAVALAVIVASRARPARAVALLLGSAVAVGVYLVSWPLTVARVTDPEMGAGVVPASVGIVLIAAAAALTSRRRNR
>NC_012522.1|WP_015889385.1|6164126_6165188_-|M23-family-metallopeptidase
MHHRSQFTASRFVSHHDDELRGHNDEVASTYPPRSVEHYPETDSSEISSMFFRSSQSTRSTSDSVDPGNGVETVDTESEIPGFIPRSGSESFEGAPSHSRRGAHRIPTPPSALKGRAAVLAVAAGAVVAAGQAAVTSGSSSSSDHSEVALASDESSAIGTTAEPQAAQYSTVADTAAADSNAPQVLNIANPTDLSQFSNLLAKGQRFSEERAAREAAARRPLFVLPAVGTFTSNFGSRWGTLHAGVDIAAPIGTPIVAVADGEVIDSGPASGFGMWVRLKHADGTITVYGHINTSTVTVGQKVMAGDQIATVGNRGFSTGPHLHFEVHLAGENKIDPLPWLASRGISLGPEMD
>NC_012522.1|WP_015889384.1|6161564_6164048_+|DNA-helicase-PcrA
MNTISGTASPLSAESTPHTAASARTGSDALLQGLNPPQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAHLVGPRANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMISKDLNIDTKRYSARLLATHISNLKNELVDPEQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGSTADGEDADHRVAPAELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNTGRREKRLWTDSGEGELITGYVADNEHDEASFVASEIDKLVDSGDAKFGDVAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEQRGISFAEALRDGGEGRVRLLNTRSQKAIASFLELMDGLRVLMPPETTADDIVPDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPTELSEERRLAYVGITRARQRLYLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWRREDPGPRLGSGGAIGGGRARGSGYGQGFGGGSGYGGGSSSTPSFGAARSRNNNLVLAVGDRVSHDKYGLGTVLETKGAGPTATVTIDFGSAGKVRLMLIGGVPMVKL
>NC_012522.1|WP_005238528.1|6160994_6161291_-|chorismate-mutase
MSTQTVASAAKETAVPTSEAEIEVLRQEIDKLDAEILAAIKRRAEVSQLIGRTRMASGGPRLVHSREMKVLERFNELGQEGHTLAMLLLRLGRGRLGH
>NC_012522.1|WP_193384868.1|6159503_6160958_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MDAVELMRTVPTTLFLGGEKCDAENGATFTVFDPATGDALTEVADASPGDAMKALDAAVAVQREWAATPARERGELLRAVFEKITARADDFALLMTLEMGKALPESAAEVKYGAEFFRWFSEEAVRIAGRYTPAPAGNGRILVTKQPVGPCLAITPWNFPLAMGTRKIGPALAAGCTMIVKPASETPLTMLLLAEVMADAGLPKGVLSVLPTSKSGEVTGPLIDDPRLRKLTFTGSTGVGRMLVEKSAKGLLRTSMELGGNAPFVVFDDADVDKAVAGALLAKMRNGGEACTAANRFHVANSVREEFTAKLVDKLSSYKLGPGTDPDTTLGPLINADQLEKVGELVQDAVGAGARVRLGGVAPEGPGYFYPATVLDAIPAQARILKEEVFGPVVAIAGFDTEEEGIAAANDTEFGLAAYIFTRDLDRALRVADALESGMVGVNRGVISDTAAPFGGVKASGFGREGGSEGIEEYLETKYVALEP
>NC_012522.1|WP_015889382.1|6157781_6159434_-|glucose-6-phosphate-isomerase
MSSDITGTAAWQKLRDHHAQIQSVHLRELFEKDPARGQELTVSAGDLFIDYSKHRVDRDTIGLLLELARSVDLEARRDAMFAGEHINTSEDRAVLHTALRLPADASLVVDGQDVVADVHEVLDRMGDFTDRVRSGEWRGATGERIKTVVNIGIGGSDLGPVMVYRALRHYADAGISVRFISNVDPADLVRSLSGLDPATTLFIVASKTFSTLETLTNATAARRWLLGGLGLGNEAVAKHFVAVSTHADRVAEFGIDTANMFGFWDWVGGRYSVDSAIGLSVMAAIGKERFAEFLAGFHAVDEHFRTAPLEENAPVLLGLIGLWYSNFFGAESRAVLPYSNDLVRFPAYLQQLTMESNGKSVRADGSPVPASTGEIFWGEPGTNGQHAFYQLLHQGTRLVPSDFIGFGEPTDDLPTADGTGSMHDLLMSNFFAQTKVLAFGKTAEEIAAEGTPEDLVPHKVMPGNRPSTTILAPKLTPSVIGQLIALYEHQVFVEGVVWGIDSFDQWGVELGKTQAVELQPVLTAAEEPAAQSDSSTDSLVRWYRRQRGRA
>NC_012522.1|WP_015889381.1|6157000_6157780_+|FAD:protein-FMN-transferase
MVSVEKWKVWGSVVEVDVTEGAALPEAAALIAAVIDEAESVCDLHRGDAEIHAVNLSQGAPVKVSRRMSALLRSALWAARMTDGVVNPLATESPDEDLIPTVHPEPSFLDVQIDDDVVFAPWGASFDITDTAKADTVDRAAELVARQLECGAAVRIGDVIATAGHCPAGGWQIPVPGDGEVELVNGTAMATAVGPPVTEPPTATEWETVTVIADDALWAYAASVAALARGIGAIRWIEQHELRARLVDRSGRVYTTESW
>NC_012522.1|WP_015889391.1|6171747_6173178_+|hypothetical-protein
MPDADEMRALLAVAFRPAGVTVVLLSALIVVTLVAANSDLTGTFGAIAASWLAIHQVPLTIDGTSLGVLPLIPTAGMVWVVARGCAAVVHPASSRRHALQVIGAAVAGPLVVTAIALAVIADASAVIPLSSPNALAAFGWVLSVHLLAAGIGVTVAMWPTVGAEFPSWVRDAVRPGLRAMMAILGAGAVMVTISLLMEWSTVGSLLEDGDGFVGSLGLTILSVLYLPNVVVGASAAVLGGTAQIGDVSVSVFGNVGGSLPPLPLLGAVPDGVSGGAWPALLVIPLLIGVMLGRDCGRRVAGQEALFTVLTAAAGVGVVTAVLGLVSGGRLGAFGTVDLNWWAFGLLTFAWLGLAGAVTAVVVAWHRSRGADDEADAEDEEPHLPGAEEVPAIAAPITEERVVPGEAAPGRVLEAELVDDTEVPAAPVAPQDTEADAEVVVDAEVEEDASAAESDGSGNSGEAPEADLPRGPATPSD
>NC_012522.1|WP_015889392.1|6173233_6173914_+|phosphoribosylglycinamide-formyltransferase
MFRSRALTSSRDHLGPTTASPVGSAPARIVVLASGAGTLLRSLIDATHADGYPAEIVAVGVDRDCDAIRHAESAGIAHFRIGLRDHADRSTWDVALTEAVASHQPSLVVSAGFMKILGPAFLDRFGGRIINTHPALLPAFPGAHAVPDALAYGVKVSGSTVHLVDAGVDTGPILAQEPVPVLDGDDESTLHERIKTVERRLLAEVIAAVATRGVVSDGRKAVIPSE
>NC_012522.1|WP_015889393.1|6173906_6175463_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MSERKAVRRALVSVYDKTGLVELATGLHKAGVELVSTGSTAAKIADAGIPVTPVEALTGFPECLEGRVKTLHPRVHAGVLADTRKPEHLAQLEELGIEAFQLVVVNLYPFTQTVASGATPDECVEQIDIGGPSMVRAAAKNHPSVAVVVDPARYDNVLTAIADGGFTLPERTALAAQAFQHTASYDVAVASWMTSTLVDSGDSQFPEWAGATWDRSAVLRYGENPHQAAALYVNSAAPAGLAQAEQLHGKEMSYNNYTDGDAAWRAAFDFSEPAVAIIKHANPCGIAVGADIAEAHRKAHACDPVSAYGGVIAANREITVEMAEQVAEIFTEVIIAPSYADGALGVLQRKKNVRVLLAQAPTATGIELRPVSGGALLQERDVLDAEGDDPANWTLAVGDAADEQTLKDLEFAWRACRSVKSNAILLAADGASVGVGMGQVNRVDSAHLAVQRAGDRVVGSVGASDAFFPFPDGLQVLANAGVKAVVQPGGSVRDNEVIDAAKEAGITMYLTGARHFAH
>NC_012522.1|WP_015889394.1|6175518_6175752_-|hypothetical-protein
MKLRINQLSTSPPYLDLPDDLTGYAVTLDLSHCDAAHEAGLGALISEVRSRGAARVVITGSPRELEGTGRTHGAAAA
>NC_012522.1|WP_015889395.1|6176155_6177022_+|DUF559-domain-containing-protein
MGEVQRPFRGSEALRDGRLTRHGLRTFRRLHRDVYVHRSVEVTALSRARAAWLWANGEAVLAGFSAAAVHGTRWIGGGEPATLIRRGSRRSVDGIDVRADALLPDEVCRVGEMLVTTPARTAFDLGRWLPVDRAVEVLDALCHDTGLRPAEISGVAGRHRGERGLASLREVVSLLDPGAESPPETRTRLVLIRGGLPAPTTQIPIADRSGRIFARADMGWVGWKVLVEYDGEQHWSDERQRTWDIERLERLAELGWVVVRVNAEQLRRRPQAIVARVRDRLRQAGAPV
>NC_012522.1|WP_043825463.1|6177227_6178319_+|N-acetylmuramoyl-L-alanine-amidase
MNRFAIKAGLGACVLGASVLIPAQVSAEPAATATGTELSGMTVFLDPGHQGSSEGHDLTQQVNDGRGNTKDCQTSGMTSLGGVPEHTINWNVSQLVKSSLESLGAKVVLSRQDDTGWGGCIDERARAASESNADLAVSIHADSTAQGEDASKHGFHMIIPSLPIPDEKADAAQSGGGLEASKMMRDAYKSDGFVPANYAGVNDGLQTRADVAGPALTQVPLVFVEMGNGSNKEDSAQLESSDGQLKHAITITTGIVTYLLTGSEAAPAQELAAAPAATTIPEASEDSASSATTTTPKATTPKAAPKSTAPDSAQLSELMEMLAPLLEVEGLDGLKDLVNDKNLGLVSDLASTLLAVITGAGGN
>NC_012522.1|WP_015889397.1|6178319_6179285_-|alpha/beta-hydrolase
MPDTEITFASGAVTYYGSLRTPADANGSAPAALLLAGSGPTDRNGDSALLPGDIGTLRHLADVLEQHGMSSLRYDKIGSGDTALGPYEVDEVGGLGFTTFVDAASAGLDFLAAQPGVDPSQLIVIGHSDGGLVALALATAENESRVRAVGLLEPLSVRLLDLLTTQIHGQLDAVVGAGQLPVELADELRLALADTVESLRTSGTIPDDLPEPLQNAGLVHANAKALAEEDALDPRALAGRLPAGFPVLTSCSAKDIQVQLADVDGLNDALAHTALTPVRMTNANHVLKDVGDRPSTGPDYVEPLPYSAEFTGPFARWIASL
>NC_012522.1|WP_015889398.1|6179484_6179796_+|hypothetical-protein
MNVVQLTTGDFVAAMFSLDFVDGGFRREAVERIHRGAIDEWVSALTGSGLFSNRAVANVVRAWRGDPRLLLDSLLAEADPVTVERYRAAWRELDAASSYEVAA
>NC_012522.1|WP_015889399.1|6179950_6181336_+|ATP-binding-protein
MTSSEHRPSTVGELRESGHVQRTVKEEIRENLLAALRDGRDPWPGIVGFEETVEPQLERALIAGHDVVLLGERGQGKTRLLRTLNLLLDEWTPVIAGSELGEHPYEPITPASIRRAQELGDSLPVAWRHRSERYSEKLATPDTSVADLVGDVDPVKVAEGRSLGDPETIHFGLVPRAHRGIVAINELPDLAERIQVSLLNVMEERDIQVRGYTLRLPLDVLMVASANPEDYTNRGRIITPLKDRFGAEIRTHYPTRLDDEVAVILQEAHLTAEVPEYLLEILARFTRLLRESTSVDQRSGVSARFAVAGAETVSAAAVHRGAVLGEADPVARPVDLETVVDVLRGKVEFESGEEGREIEVLEHLLRRATADTVRTRLGGIDLAELVDAVEQGDPVVTGERITAKALLNELPELEVLDVLAERLGAESDGERAAAAEFALEGLYLARRISKNPDINGQTVYS
>NC_012522.1|WP_015889400.1|6181335_6183309_+|VWA-domain-containing-protein
MSRKAERGPHNARYGPYEGGDPLAAPVDLREALAAIGDDVFAGSSPRQALREMLRRGNRDMRGLDELAAEANRRRRELLKRNNLNGTLEEVRELLDRAVLEERKTLARALDDDARFSEMRLEELSPSTAQAVQELAGYDWRSSEARADYEKIRDLLGREVLDQRFAGMKQALEGATEADRQAIREMLEDLNDLLDKHSRGEDTQEQFDEFMNKHGEYFPENPRNVEELLDSLAQRAAAAQRLRNSLSQEQRDELDALAQQAFGDPSLIGQLDRLDQHLQAARPGEDWQGAQRFRGDDGMGLGEGTGALQDIAELESLAEQLSQQYAGAQLDDIDAEALARQLGDEAAADAQTLAELEKALRDQGFFDRGADGQWRLSPKAMRQLGQTALRDVAQQLSSRGGQRETRRAGAMGEPTGASREWEFGDTEPWDVTRTITNAVLRASSDPAERGRVPVRLSVADVEVMETEQRTQAAVALLVDTSFSMVMEGRWVPMKRTALALNHLVSTRFRSDELQLISFGRHAQVLTPSELAGLDGAWDQGTNLHHALLLAARHLRRHPNAQPVVLIVTDGEPTAHLEPDGFAYFDYPPSARTLGLTVRELDTLARLGAHVTFFRLGEDPGLARVVDRMAERVGGRVVAPGLDGLGAAVVSDYMRRRR

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Crispr_ID: NC_012522_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012522_3

6211320-6211400

Orphan

Consensus_repeat	Method
CGGGACGCTTTGCCACTCACCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012522_3

>merge|NC_012522|3|6211320-6211400|CRISPRCasFinder
CGGGACGCTTTGCCACTCACCTGCCCGGCGTCCCCCAGGTGAGTGACAAAGTGTCCGCGGGCACGCTTTGCCACTCACCTG

>NC_012522|3|3|6211320-6211400|CRISPRCasFinder
CGGGACGCTTTGCCACTCACCTG	CCCGGCGTCCCCCAGGTGAGTGACAAAGTGTCCGC
GGGCACGCTTTGCCACTCACCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012522.1\|WP_015889420.1\|6209179_6210109_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NC_012522.1\|WP_015889424.1\|6212563_6212800_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NC_012522.1\|WP_005238639.1\|6211814_6212069_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|184031
NC_012522.1\|WP_015889414.1\|6200636_6201875_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|369468
NC_012522.1\|WP_015889413.1\|6198972_6200619_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238625
NC_012522.1\|WP_005238656.1\|6215158_6215845_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_012522.1\|WP_015889427.1\|6214482_6215091_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NC_012522.1\|WP_043825464.1\|6215844_6217323_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_012522.1\|WP_015889421.1\|6210250_6211303_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_012522.1\|WP_193384869.1\|6198339_6198963_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182632
NC_012522.1\|WP_148222628.1\|6203715_6205134_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366721
NC_012522.1\|WP_015889419.1\|6208700_6209165_-\|hypothetical-protein	unknown	unknown	unknown
NC_012522.1\|WP_015889415.1\|6202164_6203691_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NC_012522.1\|WP_015889411.1\|6196804_6198235_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_012522.1\|WP_005259913.1\|6212078_6212384_-\|30S-ribosomal-protein-S14	unknown	unknown	gnl\|CDD\|181574
NC_012522.1\|WP_015889426.1\|6214159_6214414_+\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NC_012522.1\|WP_015889423.1\|6212396_6212564_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NC_012522.1\|WP_080512590.1\|6211462_6211753_+\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NC_012522.1\|WP_015889425.1\|6212897_6214163_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_012522.1\|WP_015889417.1\|6205130_6208313_-\|NAD-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452

Protein	Function_ID	Function_description	E-value
NC_012522.1\|WP_015889420.1\|6209179_6210109_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.56419e-39
NC_012522.1\|WP_015889424.1\|6212563_6212800_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	4.28005e-32
NC_012522.1\|WP_005259913.1\|6212078_6212384_-\|30S-ribosomal-protein-S14	gnl\|CDD\|181574	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed.	3.22367e-49
NC_012522.1\|WP_015889414.1\|6200636_6201875_-\|MFS-transporter	gnl\|CDD\|369468	pfam07690, MFS_1, Major Facilitator Superfamily.	6.84965e-09
NC_012522.1\|WP_015889413.1\|6198972_6200619_-\|amidohydrolase	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	2.71672e-144
NC_012522.1\|WP_005238656.1\|6215158_6215845_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.39328e-89
NC_012522.1\|WP_015889427.1\|6214482_6215091_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.16291e-53
NC_012522.1\|WP_043825464.1\|6215844_6217323_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.57067e-51
NC_012522.1\|WP_015889421.1\|6210250_6211303_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.68443e-32
NC_012522.1\|WP_193384869.1\|6198339_6198963_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|182632	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional.	2.00356e-07
NC_012522.1\|WP_148222628.1\|6203715_6205134_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|366721	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.	6.9858e-83
NC_012522.1\|WP_015889417.1\|6205130_6208313_-\|NAD-glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NC_012522.1\|WP_015889415.1\|6202164_6203691_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	1.40692e-33
NC_012522.1\|WP_015889411.1\|6196804_6198235_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.96718e-31
NC_012522.1\|WP_015889426.1\|6214159_6214414_+\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	1.46786e-53
NC_012522.1\|WP_015889423.1\|6212396_6212564_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	1.59777e-21
NC_012522.1\|WP_080512590.1\|6211462_6211753_+\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	2.0737e-20
NC_012522.1\|WP_015889425.1\|6212897_6214163_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	9.64343e-33
NC_012522.1\|WP_005238639.1\|6211814_6212069_-\|30S-ribosomal-protein-S18	gnl\|CDD\|184031	PRK13401, PRK13401, 30S ribosomal protein S18; Provisional.	4.85312e-38

>NC_012522.1|WP_015889421.1|6210250_6211303_+|serine-hydrolase
MLRRTTAFCALICAWTLAWGAAPVVSALAPPSSGDPALIALAGQVLGRSYRENASVAYIDASGTRFANFGATEDTDFEIGSVTKTFTAELFVDAVARGEVREDTKVGELLPLQGAPVGDVTLLELASHTSGLAQFPMSTDTLVAVGHWVVASNPFTYDRDTLLQQLRSAPLTTRGSYSYSTVGFALLGQALAAAAHTDYPSLLRERMLVPLGLSQSWMPLTGADLPADVTRGFDVLHRSQDPWPLDAYAPAGGLRSTANDMSTYVRALLGGTVPGGTAMDPRWVGDNYRALTWSIVPFEGRDYTLHGGATGGFQCTVVLDRANDRGLVILTDTIGGLEQQGLEILAHTPM
>NC_012522.1|WP_015889420.1|6209179_6210109_-|AEC-family-transporter
MSGVVAGFTVIFVIIAIGYILGRRGTLGAEGESVLGRLVFFVATPALLFDSLASSDLSVIFSPTLAVAAVTALTVGALYMVVARVWLRRPLPELTIGALSSSYVNSANLGIPIAVFVLGDASFVAPLLLFQIIAYSPIALTILDVTTLRRGASRLDTITAPFKNPIVVAGAAGLLIALLGWTPPEALMQPFRLIGGASVPGALLAFGISLYGVRVLEKGTSPRRDVALASVLKIVVQPVLAYLMARYLLGLDGHELFAIVVVATLPTAQNVFVYASRYGVGTVMARDTAFVTTLAAIPGIALVSGLLAG
>NC_012522.1|WP_015889419.1|6208700_6209165_-|hypothetical-protein
MRVLALAVLACLAVAGCGSGSSTDEPTIPPEIASAVDPSPTNPSSGMPIPSEVPGEDFGTVFEPRPDIVRANPTPFESWSRADGNKVAIHFVTGTPECYGADAAVTETDTTVTISLRTGTLPEAADKMCILVAVFGTLEVQLQAPLGNRQVING
>NC_012522.1|WP_015889417.1|6205130_6208313_-|NAD-glutamate-dehydrogenase
MSYTGVIPSTTDTPGPRRDEAAVSSAVLASGGTTPRLRFVEFADARPEPAAVMVWPQGTPLLAELVALFADLGLRVASHEQLPEGEPGGPLVHRFDFSAGDFAWDAETPGLLSDAFEAAAAGHLEVDGFTRLVAAANLTWTDAVLVRAACRYLRQVGLGLSEPNIVAILLRHNDFVRGFRDLFTARFDPAVAGSDRDSAAANAERALREAIDRTATMDEDRLLRGLLSFTSAVLRTNWFRHDRTISAAPAAFKIDPSLLSLSAAVTPYREIFVHSPIVEGSHVRSGPVSRGGLRWSDRKDDFRTEVLGLMKTQHVKNSLIVPMGAKGAFVVRTETTPDAVRAAYTSFIDGLLDVTDDIVDGEVVHPRDTVIYDESDPYLVVAADKGTARFSDLANSIATRRGFWLGDAFASGGSAGYDHKAMGITARGGWVSVRRHFAEMGKNVDTDAFTVVGIGDMSGDVFGNGMLLSRAIRLVGAFDHRHIFLDPEPDSEASYRERERLASVPGSSWDDYDRSLVSAGGGVWPRTAKKVPLSPQVRERLGVTATELPPHEVVKALLTADVDLLWNGGIGTYVKASTEGNADAADPANDAVRVEAADVRAAVIGEGGNLGLTQRARIEYALNGGRINADFIDNATGVATSDREVNLKVALDAAVAVGELPAAERNTLLARVQDEIGESVLADAASQTLAISLAEVHAPFLLGRHERLIENLERDAGISRAAEVLPSAAELSARHRAGQGLVRPEIAVLLAQSKNLVVTELLASPVLDFAVFDGVLADYFPAPIRERVPRQISGHRLAREIVAVIVAGDMIDRVGPGLIHRLEERLGVGTPEITVAYAVVRQVFDIDRLWNEVLTLPGASHRTRLNLHFGIQDLIERTTSWLLRHRTAGTDAQELIERFAKPVQELAAALPRLTGAPAQDLGTLRILAQAFALETTAQSLDLPITQVAETYREFGRVVGLDWLSERFSVGETGTAYWEAMAGAVLVDNLQEHWHGLIGLVLRGASPATTAADAVAHWLTEHTTAADRLARMLGELRSLDRVDNSGICVIDAELSLALTRC
>NC_012522.1|WP_148222628.1|6203715_6205134_-|FAD-dependent-oxidoreductase
MNQNHLSRTDQHFNQRSSKVPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVSPDQTALISLLDELGLETFDRYREGESVYISAAGDRTRYTGESFPVDETTRKEMDRLVQILDDLAAQIGAEEPWAHPLARELDTISFKHWLIEQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAAALGDDVFLNAPVRTVRWSEDGAVVLADGDIRVEASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRADGLSGTGFGASEVVQEVYDNTNHEDTRGTLVAFVSDEKADAMFALSEEERRATILGSLARYLGPKAAEPVVYYESDWGSEEWTRGAYAASFDLGGLHRYGADTRTPVGPFHFSCSDIAAEGYQHVDGAVRMGQRTAADIVARLGK
>NC_012522.1|WP_015889415.1|6202164_6203691_+|PucR-family-transcriptional-regulator
MTVPVRWMLSQPDLALELKGGAAGLGNEITFAHTTELQDPFRWLSGGELLLTTGIRLPLTAADRARYLRGLGEAGVAAVGFGTGLSHPEVPEDLVVVADEIGLPLLEIPLPTPFAAVVKRVMNRLAEQEYEAVLRASRAQPRMTRAVIQGGTGATVRELAVATSSTVLLLDLSGRVLEAHPAQPAEDVLGELRDVLEAGTGGASSSVSLARSGASITVQQISVGSTPHGHLAVISPTALSHVDQILLGHANSLLALDFEKPVRLRTAQNRLNSHALGLLLTEDRDLAPAWSQIRHAADAEGMVRGLTVVAETSALAERAESAVAVAMNKAGRQLFSRRHDARVTVLLRGTDDADFARAMLRTLSGPERKAIRAGLSGRREVAALVAAIEQSQLAASAAEAGADPLEFAALTGSALLAFSSTREVLNSLADTMISPIDDYDRTNGTELLGSLRAFLEANGHWESAAAAMGVHRHTLRSRMARIESLIDCRLDVARVRAELLLAIIARQS
>NC_012522.1|WP_015889414.1|6200636_6201875_-|MFS-transporter
MTAAVRVPLTLGRGIATFSVFVVGYITANLIPLMIIAMVDDLGITQTVAGAVLTGSLLATALVCLATTRWAAGRSRHLLGRVSLVVMAAGFGVAAVIHSPPIACAAIIVGGIGAGGAVAVGGAALAALNNPNRVSGINGLVNRTAVTGVLALIPILGLHMTNAFGIVAVLALATVFTITWLPSAPAVDDDEPSAAHTRTPLPEGVTEKKLAVAGFSLLVMFAVWAIGEDSLWAVSGIMGAEHASLTEQQMGLALSLSTAGGIGAALVLTALGSRLGRTVPTAVLLGLGAVLKLGSCLATDSTTYLVLIIAWNTVYAAAFIYVVAIAAALDSSGRWSAPLLGTYLVGSAFAPLFGTLVTGAVGYVAFGFVLAGISLVLLVPIVWIARLSTRTEQASSSPGQDPSARYTTSVVV
>NC_012522.1|WP_015889413.1|6198972_6200619_-|amidohydrolase
MNTDTTHYRGGRIFTAAEPAWAESMIVRGERLTYVGDTATADTLSGDARVVDLGGAFVLPGFIDAHTHLLMMGQALQKVDLQSAADLSDIQDRIRRFAAENPDAPRILGRSWLFSALDGHPPTRQMIDAAESDRPVYLDSNDVHSAWVNTAALRELGIDANTPDPIGGRIERDPVTGEATGMLFETAVTQIVWPALAKAISDDERDAALAAAFEQYLADGVTGAVDMALGADEVAALERALAAGGGTLPLRVAGHWLIERTDSDEDNVRQVHEAAAHQQRLQGPWLRMAGIKVIIDGVIDSCTAAMKEPYSDGTNAEPIWDLASLAPVVAAADAAGLQVAMHAIGDEASEIALAALEHAIAANGVRPRRHRMEHLETITEDNVQRLARLGVVASMQPVHADPAIQENWRAMLGDHRVERAFPWPEMTAAGAVLALGSDAPTAPHPPLPNMYIATTRKSAIDPALAPNLPEYALPMADALAHATRDAAYSCRWDDLTGQLVEGKAADFVVLDGDPFTAGADSLLTARVQLTVVAGSVRHEVEVAGSHHG
>NC_012522.1|WP_193384869.1|6198339_6198963_+|TetR/AcrR-family-transcriptional-regulator
MARPNTQKQRRSELIEATLQAGSAHGLRSLSLTDVAKRAGLTRGALLYYFDDLDSLLAEAHRAGTERYCDLRDEAVAAQSSYAAKLRTAIDAGLPSGPDDTLMRLLYEFDFMTGTSALHDELVQKMYLRQLATYRAILGDGHGAGEFAVRGDIDQAAMNLVALEDAYGLHIVGGNSLITVDVARTAMLGFCEQIGCGVTEDAAAERG
>NC_012522.1|WP_015889411.1|6196804_6198235_-|APC-family-permease
MDQTARPPTVTSTTPSGTYEASLSRSIGVGGNILITLSSISPASSVFILGGSALALFGTGVFWAFLVAGVVSILIAFCYAELASAYPVAGGDYSLVSRALGPAFGVATFFISLISLPLIIAVFALGVADYLGVAIHGLSPQQTALVVVVITTVTACFDIRTNAWLTGVFLGVEMAALGLLTVLGFVHMERPLTSLLSPEVLDPATGTLAPLAISGLMLAVTQGIFAYNGYGGAVYFAEETKNAARSIAKAVIWSAVITVATELVPLIAIMVGARSQTELFGSSLPVEAFLTERAGHAVAMVVLLSIALAVINAIIAITLQAGRLLYAAARDRALPQTVAAPLQAVSTKGRVPVLATVVMGAIAFAACFVPLDVLLTATGSTLMFTYLFIALAAIRHRRGGEARAGYRMPLWPLAPGICIAALGLVFVVTLLDPEQWLSLGISLGLVAAGFVYYALYLRPRKNTHLLLLDAAPEEIC
>NC_012522.1|WP_080512590.1|6211462_6211753_+|DUF305-domain-containing-protein
MYPHHAQALERADMDHGSTDHGDGMMSADRVGALTALSGAEFDRQWLTMMIEHHEGAIEMANTELADGQNPDAKQMATGSVTAQQREIADMQALLG
>NC_012522.1|WP_005238639.1|6211814_6212069_-|30S-ribosomal-protein-S18
MAVKRAPSKKPRPVEGRKPKKNPLFAAKIEYVDYKDINLLRTFISDRGKIRSRRVTGLTPQQQRQVAVAVKNAREMALLPFTSR
>NC_012522.1|WP_005259913.1|6212078_6212384_-|30S-ribosomal-protein-S14
MAKKSKIAKNEQRKIVVARWAERRAELKETIRRPSSSEDERAEARAALQRLPRDASPVRLRNRDAADGRPRGHLRKFGLSRVRVREMAHRGELPGVHKSSW
>NC_012522.1|WP_015889423.1|6212396_6212564_-|50S-ribosomal-protein-L33
MAGRNEIRPIVKLKSTAGTGYTYVTRKNRRNDPDRLVMKKYDPVARKHVDFREEK
>NC_012522.1|WP_015889424.1|6212563_6212800_-|50S-ribosomal-protein-L28
MSAHCQVTGRKPGFGKSVSHSHKRTNRRWDPNIQKKTYLLPSEGRRITLTLSAKGIKTVDRDGIEAVVARIRARGEKV
>NC_012522.1|WP_015889425.1|6212897_6214163_+|GTP-binding-protein
MTIVIERVLVNEILDGRTPLILVSGWSGPAEEAARSLLREGTVVVHHDLDLVHEGVVRRTVTTLESGAPRERLRILELAHGCISCTLREDLLPLIRRLHTRSSVQRIVLHLDRGLEPEAVCWAVEHVSVSGVVGQIDGPASRDVRVDGVVTCLDAGSWLADATGDDALDDDRTVAQVAVGQVDFADALVVSGSAGDGWQQARLHAVLARLAPGAPISWGGGTPDVERLLLDIPAGARRGEPSHAHSPLLRGQPPLSHDCGVMLVEFTATRPFHPERLHEAVDVLLDGVVTSRGRVWVATQPDEALWLESAGGGLRVASADRWLAAMTPEEQEQAGVARRAMAALCWDERFGDRHTSMVVLVHAADPTEIDRTLQWALVTDDELADEAAWQSWPDPFGQFHEDPCESSESPYAEPESREGHE
>NC_012522.1|WP_015889426.1|6214159_6214414_+|type-B-50S-ribosomal-protein-L31
MKPGIHPDYHPVVFQDASTGTTFLTRSTLTSDRTAVWEDGNTYPLVVVDVTSESHPFWTGAQRVMDTAGRVEKFERRYGVRKRP
>NC_012522.1|WP_015889427.1|6214482_6215091_+|trimeric-intracellular-cation-channel-family-protein
MLLYILELVGIAVFAASGALVGVTKRLDIFGVCVVGVFTALGGGIVRDVLLGIHPPTSLGSWPNLGTSFGMSLLVFFLHSTVGRLRREILVLDALGMGLFASTGAVIALDHGASPLASCLIGGTAAIGGGILRDVLVNEVPLLLQRDFYAVPALLGSALVVAVSEWGSGTDVALVVGTVFASALRLVALWRNWGLPGPRVLE
>NC_012522.1|WP_005238656.1|6215158_6215845_+|response-regulator-transcription-factor
MRILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDALVLDVMMPRLDGLEVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAAPEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEEVWGYDFPTSGNALEVYVGYLRRKTEADGETRLLHTVRGVGYVLRETPP
>NC_012522.1|WP_043825464.1|6215844_6217323_+|HAMP-domain-containing-histidine-kinase
MAVPFHRTAAKSGAAKHDTHHMSRHTTGPIPLPPEMRPPMPLTRSVSLRWRVTLLAASVVAIAVAVMAIAAYAVVSRALYADVDNQLRNRASALIDSNLVTFDPRYIAGATLYTTDISVALIFPDLDTYTPPGSNVPIGEPELSVARGEQETSLRTADNQRVLAERTQDGSTLVIAQRLAPTGAVLDRLAWVLFIVGGCGVVLAAAAGTTVGRTGLRPIARLTAATERVARTDDLTPMPVTGNDELARLTESFNTMLRALAESRERQSRLVADAGHELRTPLTSLRTNMELLIASSRPGAPHIPDEDMAELRTDVVAQIEELSQLVGDLVDLAREDAPETVFERVDLSEVVDRSLERARRRRNEIDFTAVTVPWFVYGDHAGLSRAVLNVLDNAAKWSPTGEQVRVAMKPAGDGLLELTVDDAGPGIPEEDRELVFDRFYRSTASRSMPGSGLGLAIVRQVVVKHGGTIAVDVSERGGALIRIVLPGEPEAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4339740 : 4357193

Mycobacterium_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043825025.1\|4339740_4342125_+	right-handed parallel beta-helix repeat-containing protein	A0A222ZHC3	Arthrobacter_phage	4.1e-10	43.0
WP_012691221.1\|4342041_4343364_-	hypothetical protein	NA	NA	NA	NA
WP_012691222.1\|4343476_4344403_+	hypothetical protein	A0A2D1GPT3	Mycobacterium_phage	1.5e-21	26.2
WP_148222498.1\|4344483_4345203_+	hypothetical protein	B5U5F3	Mycobacterium_virus	2.8e-10	39.1
WP_012691224.1\|4345268_4346408_+	Ig-like domain-containing protein	A0A0M4S3M0	Mycobacterium_phage	3.8e-78	47.4
WP_148222499.1\|4346606_4346921_+	hypothetical protein	NA	NA	NA	NA
WP_043825027.1\|4346941_4347244_+	hypothetical protein	A0A160DF01	Gordonia_phage	4.1e-08	37.4
WP_012691227.1\|4347243_4347594_+	hypothetical protein	NA	NA	NA	NA
WP_012691228.1\|4347586_4348069_+	hypothetical protein	A0A222YWK3	Mycobacterium_phage	1.0e-21	36.7
WP_043825029.1\|4348127_4349066_+	hypothetical protein	A0A2H4J3T5	uncultured_Caudovirales_phage	1.6e-18	28.9
WP_012691230.1\|4349173_4349566_+	hypothetical protein	NA	NA	NA	NA
WP_012691231.1\|4349604_4350012_+	hypothetical protein	NA	NA	NA	NA
WP_012691232.1\|4350031_4354507_+	transglycosylase SLT domain-containing protein	A0A0M3UKA7	Mycobacterium_phage	1.5e-16	40.0
WP_012691233.1\|4354506_4355430_+	hypothetical protein	A0A2D1GPQ8	Mycobacterium_phage	4.2e-43	34.2
WP_012691234.1\|4355426_4357193_+	hypothetical protein	A0A222ZPG6	Mycobacterium_phage	2.3e-146	47.4

DBSCAN-SWA_2

7849918 : 7906363

Corynebacterium_phage(50.0%)

transposase,integrase

attL 7900483:7900542|attR 7904003:7904090

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012690772.1\|7849918_7851166_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	3.1e-110	51.7
WP_015890853.1\|7851152_7851476_+	thiol reductase thioredoxin	NA	NA	NA	NA
WP_015890854.1\|7853656_7855168_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_015890855.1\|7855211_7856642_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_015890856.1\|7856745_7858164_-	APC family permease	NA	NA	NA	NA
WP_148222543.1\|7859014_7859695_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015890858.1\|7859937_7860432_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_015890859.1\|7860483_7860807_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015890860.1\|7860825_7862085_-	MFS transporter	NA	NA	NA	NA
WP_015890861.1\|7862084_7864172_-	acetate--CoA ligase family protein	NA	NA	NA	NA
WP_015890862.1\|7864168_7864981_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_015890863.1\|7865002_7866616_-	sodium:solute symporter	NA	NA	NA	NA
WP_015890864.1\|7866612_7866882_-	DUF3311 domain-containing protein	NA	NA	NA	NA
WP_050785168.1\|7867328_7868435_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_015890866.1\|7868427_7869972_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_015890867.1\|7869997_7871158_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_015890868.1\|7871172_7871994_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_015890869.1\|7872037_7873021_-	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA
WP_015890870.1\|7873065_7874346_-	crotonyl-CoA carboxylase/reductase	NA	NA	NA	NA
WP_015890871.1\|7874505_7875333_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_015890872.1\|7875329_7876922_-	AMP-binding protein	NA	NA	NA	NA
WP_015890873.1\|7876924_7877497_-	OsmC family protein	NA	NA	NA	NA
WP_015890874.1\|7877553_7878933_-	MHS family MFS transporter	NA	NA	NA	NA
WP_080512552.1\|7879263_7879554_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015890876.1\|7879934_7880831_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015890877.1\|7881876_7883340_-	amino acid permease	NA	NA	NA	NA
WP_015890881.1\|7884570_7885056_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_015890882.1\|7885156_7886383_+	PLP-dependent transferase	NA	NA	NA	NA
WP_015890883.1\|7886899_7889251_+	pyruvate dehydrogenase E1	NA	NA	NA	NA
WP_015890884.1\|7889267_7890347_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_015890885.1\|7890400_7890640_+	hypothetical protein	NA	NA	NA	NA
WP_043826980.1\|7890709_7892554_+	acetolactate synthase large subunit	NA	NA	NA	NA
WP_015890887.1\|7892956_7893379_-	oxidoreductase	NA	NA	NA	NA
WP_015890888.1\|7893394_7894153_-	oxidoreductase	NA	NA	NA	NA
WP_015890889.1\|7894155_7894434_-	oxidoreductase	NA	NA	NA	NA
WP_015890890.1\|7894474_7894759_-	hypothetical protein	NA	NA	NA	NA
WP_015890891.1\|7894948_7896073_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080512553.1\|7896188_7896479_-	hypothetical protein	NA	NA	NA	NA
WP_015890893.1\|7896495_7896840_-	hypothetical protein	NA	NA	NA	NA
WP_158306523.1\|7896767_7897304_-\|transposase	transposase	NA	NA	NA	NA
7900483:7900542	attL	NA	NA	NA	NA
WP_015890898.1\|7900635_7901559_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_043826982.1\|7901558_7902488_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015890901.1\|7903344_7903974_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	9.2e-10	32.7
WP_015890904.1\|7904955_7905345_+	hypothetical protein	NA	NA	NA	NA
7904003:7904090	attR	NA	NA	NA	NA
WP_015890905.1\|7905331_7906363_+\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_012521

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47519 : 85558

Mycobacterium_phage(28.57%)

transposase,integrase

attL 32408:32424|attR 88629:88645

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
32408:32424	attL	NA	NA	NA	NA
WP_012687094.1\|47519_48662_+\|transposase	transposase	A0A0R8V9X2	Thermobifida_phage	8.9e-128	63.9
WP_080512625.1\|48820_49231_+	cytochrome P450	V5UQK0	Mycobacterium_phage	4.1e-35	56.6
WP_012687096.1\|49163_49457_-	hypothetical protein	NA	NA	NA	NA
WP_050785283.1\|49649_50768_-	DUF3068 domain-containing protein	NA	NA	NA	NA
WP_043827432.1\|50850_52017_+	cytochrome P450	NA	NA	NA	NA
WP_012687099.1\|52051_53137_+	DUF5593 domain-containing protein	NA	NA	NA	NA
WP_012687100.1\|53166_53730_+	septation protein IspZ	NA	NA	NA	NA
WP_043827433.1\|54022_54454_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_050785291.1\|55025_55523_+	hypothetical protein	NA	NA	NA	NA
WP_043827489.1\|55555_55858_+	hypothetical protein	NA	NA	NA	NA
WP_043827435.1\|56086_56344_+	hypothetical protein	NA	NA	NA	NA
WP_012687106.1\|58326_58965_+	hypothetical protein	NA	NA	NA	NA
WP_012687108.1\|59268_60480_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012687109.1\|60870_62106_+	hypothetical protein	NA	NA	NA	NA
WP_012687110.1\|63363_64146_+	AAA family ATPase	NA	NA	NA	NA
WP_012687111.1\|64142_64514_+	hypothetical protein	NA	NA	NA	NA
WP_012687112.1\|64670_65945_+	DUF2637 domain-containing protein	NA	NA	NA	NA
WP_043827438.1\|66307_66616_+	hypothetical protein	NA	NA	NA	NA
WP_012687116.1\|68507_69452_-	phospholipase D family protein	NA	NA	NA	NA
WP_043827490.1\|69720_69948_+	hypothetical protein	NA	NA	NA	NA
WP_012687118.1\|70075_70246_+	hypothetical protein	NA	NA	NA	NA
WP_012687119.1\|70435_70828_+	hypothetical protein	NA	NA	NA	NA
WP_043827440.1\|70824_72846_+	hypothetical protein	NA	NA	NA	NA
WP_012687122.1\|72845_73643_+	hypothetical protein	NA	NA	NA	NA
WP_012687123.1\|73852_75853_+	cutinase family protein	A0A166Y6Q9	Gordonia_phage	5.2e-06	32.5
WP_012687125.1\|76370_76715_+	hypothetical protein	A0A222ZKW4	Mycobacterium_phage	2.0e-11	43.0
WP_012687126.1\|78348_79653_+	MFS transporter	Q6JIH2	Burkholderia_virus	8.2e-45	31.0
WP_012687128.1\|80390_81590_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_043827491.1\|81619_82534_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012687130.1\|82530_83520_+\|integrase	site-specific integrase	A0A0K2CP59	Brevibacillus_phage	2.2e-10	25.4
WP_012687132.1\|84178_85558_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5N3F9	Enterobacteria_phage	7.2e-15	25.4
88629:88645	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012520

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_006969

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_012522

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_012521

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection