CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017482	Lactobacillus rhamnosus GG, complete genome	3 crisprs	DinG,WYL,DEDDh,csa3,Cas14u_CAS-V,PrimPol,RT,csn2,cas2,cas1,cas9,cas14j,cas3	2	18	6	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017482_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017482_1

897651-897752

Orphan

Consensus_repeat	Method
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017482_1

>merge|NC_017482|1|897651-897752|CRISPRCasFinder
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCCTTAGCTATGGCTACGTTAGCCGCACGGAGCGGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC

>NC_017482|1|1|897651-897752|CRISPRCasFinder
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC	TTAGCTATGGCTACGTTAGCCGCACGGAGC
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017482.1\|WP_005688187.1\|891651_892704_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NC_017482.1\|WP_029943817.1\|894988_895645_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NC_017482.1\|WP_005684485.1\|897806_898364_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NC_017482.1\|WP_005688668.1\|888615_889551_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NC_017482.1\|WP_014569351.1\|889547_890138_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NC_017482.1\|WP_014569356.1\|895672_896938_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226583
NC_017482.1\|WP_005684490.1\|903320_904208_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NC_017482.1\|WP_005684496.1\|908026_908893_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	unknown	unknown	gnl\|CDD\|273991
NC_017482.1\|WP_076638763.1\|898644_898845_+\|acetyltransferase	unknown	unknown	unknown
NC_017482.1\|WP_014569360.1\|904478_905576_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_017482.1\|WP_014569349.1\|886508_887801_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_017482.1\|WP_005688690.1\|905572_906277_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_017482.1\|WP_005684479.1\|893328_894900_+\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NC_017482.1\|WP_014569350.1\|887800_888529_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235506
NC_017482.1\|WP_014569361.1\|906269_907937_+\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NC_017482.1\|WP_014569352.1\|890358_891600_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|234789
NC_017482.1\|WP_005684489.1\|902644_903331_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NC_017482.1\|WP_005688681.1\|897096_897615_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NC_017482.1\|WP_014569359.1\|904285_904423_+\|hypothetical-protein	unknown	unknown	unknown
NC_017482.1\|WP_005684487.1\|898946_901310_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237260

Protein	Function_ID	Function_description	E-value
NC_017482.1\|WP_005688187.1\|891651_892704_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NC_017482.1\|WP_029943817.1\|894988_895645_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	4.23849e-64
NC_017482.1\|WP_005684485.1\|897806_898364_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.40425e-33
NC_017482.1\|WP_005688668.1\|888615_889551_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	1.64969e-33
NC_017482.1\|WP_014569351.1\|889547_890138_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.71207e-42
NC_017482.1\|WP_014569356.1\|895672_896938_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	3.8383e-138
NC_017482.1\|WP_005684490.1\|903320_904208_+\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	2.60846e-80
NC_017482.1\|WP_005684496.1\|908026_908893_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	gnl\|CDD\|273991	TIGR02136, ptsS_2, phosphate binding protein. Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This model separates members of the current family from the phosphate ABC transporter phosphate binding protein described by TIGRFAMs model TIGR00975. [Transport and binding proteins, Anions].	1.71825e-97
NC_017482.1\|WP_014569360.1\|904478_905576_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.90945e-08
NC_017482.1\|WP_014569349.1\|886508_887801_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.72204e-71
NC_017482.1\|WP_005688690.1\|905572_906277_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.69015e-95
NC_017482.1\|WP_005684479.1\|893328_894900_+\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NC_017482.1\|WP_014569350.1\|887800_888529_+\|SDR-family-oxidoreductase	gnl\|CDD\|235506	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	3.75019e-52
NC_017482.1\|WP_014569361.1\|906269_907937_+\|signal-transduction-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	2.85674e-74
NC_017482.1\|WP_014569352.1\|890358_891600_+\|competence/damage-inducible-protein-A	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	0
NC_017482.1\|WP_005684489.1\|902644_903331_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	2.31232e-125
NC_017482.1\|WP_005688681.1\|897096_897615_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	3.08514e-22
NC_017482.1\|WP_005684487.1\|898946_901310_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237260	PRK12906, secA, preprotein translocase subunit SecA; Reviewed.	0

>NC_017482.1|WP_005688681.1|897096_897615_+|ComF-family-protein
MQVAAEPCLDCRKWAKHGPLLNNRALFVYDAKMKAWIYQYKGLGDYRLHVAFQDLIAERLRHAEALVPIPSEAKHYEWRGFDPILGLFGCLPLQNWLQKSATARPQAQKTRRERLKTPQSFRVLVSAKTLNRVRQITLLDDLYTTGRTLYHARDALVAAGFKGTIQAFTLIR
>NC_017482.1|WP_014569356.1|895672_896938_+|DEAD/DEAH-box-helicase-family-protein
MDLAGAQLTQRELARLAVSNISHATVVPALVKDHHQWQCQRCCSRRPVALPDGRIYCSECVALGRLTNADHLYRFEQAHLPVGDGQLTWHGVLTPDQQAASDALQASVAAGREHLIWAVTGAGKTEMLFPTIAQLIQQQKRVAIVSPRIDVIRELAPRFRTAFATTPISVRYGGHFDQTDSDLLLATVHQLLRFYRAFDLIVVDEVDAFPMRGTPMLHQAVRQARRGSIAYLTATPDRQLKQAIRRGRLGVSRLFRRFHGHPLPVPRIQLVNLRHVPHQLPKAVIVWVQQVLATKRVCLLFVPKISWAEQLAGKLRQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERGVTVPRCAVAVLAAADPEFSASALIQIAGRAGRAADSPDDPVVFFSDRYTLAMLAARRQIVMMNGR
>NC_017482.1|WP_029943817.1|894988_895645_-|YigZ-family-protein
MMKPYLTIKESGNYTQIIKKSRFITHLARIHDEDEAKAIIDRISHEHAKANHNVFAYVLGNENQIQRASDNGEPSGTAGPPTLEGLLQHELRDTLAVTTRYFGGIKLGAGGLIRAYAGNVNAAIETIGIVARIKQKAVTFQIPYADLDPLQHFLETHNLTIATIDYGVAVTLTLHLDADQLDKNLALIKDFLHGQFDPQIGTSQYREVPYATSEVHKP
>NC_017482.1|WP_005684479.1|893328_894900_+|ribonuclease-Y
MSSVTLVSITLAAVIALAVGLLIGFALQKKLHQNSLDRATQTAEGIIEAAKKEAATLKKEKLLEAKDENHRYRTQLEDELKDRRAEVQKSEHRLNQREDTLDRRDDTLDRKEQSLADREANLNKRQQQLDEREQAISSEISKQQTELERIAELSHEQARTQILDQTQSELTHERAVMIKESEDEAKEAADKKAKVLIADAIQRSASDIVAETTVTVVNLPNDDMKGRIIGREGRNIRTLETLTGIDLIIDDTPQAVVLSGFDPIRREIARIALEKLIQDGRIHPARIEEMVDKARKEMDDRIREIGEQAIFDVGIHNMHPDLIKILGRLHFRTSYGQNVLDHSIQVAKLAGVMAAELGEDVTLAKRAGLLHDIGKALDHEVDGSHVEIGVELATKYKEPKTVINAIASHHGDVEPTSVISVLVAAADAISAARPGARSESLENYLHRLEKLEAIANSHAGVDHSFAIQAGREVRVIVQPEKLSDDQSVILARDIRNEIEKELEYPGHIKVTVIRETRTVEYAK
>NC_017482.1|WP_005688187.1|891651_892704_+|recombinase-RecA
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADIETDTTTSAAS
>NC_017482.1|WP_014569352.1|890358_891600_+|competence/damage-inducible-protein-A
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQTLAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMVDHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMIGIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDARQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAVMTGMMMVLKRLRE
>NC_017482.1|WP_014569351.1|889547_890138_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNLPNKLTLIRIFLIPVFTLLLAFNWPAGYLTIAGTKVAMSWFIALIIFIVASLTDFADGQIARRKHLVTNFGKFADPLADKLLVMTAFLFLTAAGQIPAWGTAIILWRELAVTGLRLLLSNEGEVLAAAWPGKIKTNTQMFAIIFLMLNNAWFNNINIPFALILFYVAVFFTIYSGVEYFYKNRGVFADSFGSKQ
>NC_017482.1|WP_005688668.1|888615_889551_+|helix-turn-helix-domain-containing-protein
MDEIGQKLRDARIEKGYTIDDLQQITKIQKRYLIAIEEGHFDALPGDFYVRAFIKQYADTVGLDGDELLTQFQQDIPEPQPQEYAAQSVENKTRATRAEEASPVNRLRRYLPQIAIAAFVIVAIIVIYVVMLFSQSGPKQTIPADSESVAVSSKRSSSKASKSSKTSSSSKSSKSSASSSSKSSEKASKESKKKSDKLDISVAAANGATQAVTLKNLPTSGNKLTLGANGATAWISVIVNGSTTWQGSLTSGNTQEVTLPDNTSTFQVRSGNATATTIELNGKKVDISNGTSVVRTITFTSSTSESEASQE
>NC_017482.1|WP_014569350.1|887800_888529_+|SDR-family-oxidoreductase
MRSALIIGASGDIGQAVAAKLAAAGWSLYLHYFKHEQVVMDQMKAYQAAYPHQDFIPLQYDLTDDRHLDELTNQLFSLDAVIFAAGMTYYHLFKETTVPEMTTLMRVHLLTPMVLLTKVERKLAQSGHGRVIFIGSVYGGTGSAMEVAYSTVKGAQSAFVKAYAQEVASLGITVNVVAPGAVTTKMNTKMFDSDTLAKVQAEIPAARFATPQDISYYVSMLVAKDAAYLTGQTLYVTGGWRM
>NC_017482.1|WP_014569349.1|886508_887801_+|insulinase-family-protein
MKTQYFRDVDETLITTTLPNGLRLQVVPRPAYHKSYAIMTTDYGAIDTRFAPDGKQMVTYPAGIAHFLEHKLFEKEDHDAFDLFGETGASANAFTSATKTSFLFSTTTQFNKNLQILLDFVQAPFFSTESVAKEQGIIGSEIQMYQDDPGWRVYAGLLENLFPNHPAHVDVAGTAASIAQITPEMLYTIHRVFYQPSNMTLVIVGNIDVENVIDFVAANQAQKTFPTRQPIVRGVEADVQTADIIPYRELKMPVSRPKTLVGFKGQVAIPQTAAGWQYQLSIRLLLEVLFGDSSQLYQAWYDRGLIDDSFDFDFTNQRSFSYGLVGGDTDDPQGLSAAIKEVLAHAADQADLNRNRVALIKRASLGKYYAGLNGLNGVANQLSALSFGEASLFDFPQILNRISFEDLEQLIPKLFNTEALTVLTMLPEGK
>NC_017482.1|WP_005684485.1|897806_898364_+|ribosome-associated-translation-inhibitor-RaiA
MLTYNVRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAHVNLKVYPDKTAKVEVTIPLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSREKGFGQIDIDSNAPAEPKPAEDDDNLKVVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDADTNGTSIVYKRRDGRYGLIETNE
>NC_017482.1|WP_076638763.1|898644_898845_+|acetyltransferase
MAKVWLSRSRTLMFWFMPITRSPAQKPAHKDLGRNDQTRVITPKATYAPVSNRAGSRSPSYFQSPL
>NC_017482.1|WP_005684487.1|898946_901310_+|preprotein-translocase-subunit-SecA
MANILRKWVESDKREIGRLGKIADQVQRYEDEYAALSDDQLKANTQKFKDRLAAGATLDDILPEAFATAREGAKRVLGLFPFRVQIIGGIVLHEGNIAEMKTGEGKTLTATMPVYLNALTGKGVHVVTVNEYLSTRDATEMGELYNWLGLSVGLNLNSKNSDEKREAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNFAIVDEVDSILIDEARTPLIISGGAEKTTGLYIRADRFVKTLKADTDYKIDWPTKTISLTESGIRKAEKNFGLDNLYDTENTALTHHIDQALRANYIMLKDIDYMVSNGEVLIVDQFTGRAMEGRRYSDGLHQAIEAKEGVQIQDENKTMANITYQNFFRMYTKLAGMTGTAKTEQEEFREIYNMEVISVPTNKPVIRVDSPDVLYPTLDAKFNAVVDDIKKRHKKGQPILVGTVAIESSERLSKQLDDEKIPHTVLNAKNHFKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVTELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSTQFYLSLEDDLMKRFGSERIKAMLDRFKVADDDQVIQSRMISRQVESAQKRVEGNNYDTRKNTLQYDDVMREQREVIYKQRQQIINEDETLKPVLMAMINRTITRIVQTHTQGDQKDWNLDALYAWITANMADPEKFKRSELDGKSQDELIGLLADMAETNFQHKNKQLGDDAQMLEFEKVVILRVVDSAWTDHIDAMDQLRQSIGLRGYGQMNPLVEYQEEGYRMFEEMIASIDDDVTRLFMKAEIRQNIRR
>NC_017482.1|WP_005684489.1|902644_903331_+|cell-division-ATP-binding-protein-FtsE
MIQMENVTKQYANGVTAIKDLNLKIQDGEFVYVIGPSGAGKSTFVKMLYHELKPSSGSIKIDDFDFSTMKPSQVPFLRRHIGIVFQDFKLLPRLTVYENVAYAMQVIEAPDDKIKDRVLEVLGLVGLEQKLRRFPDELSGGEQQRVSVARAIVNKPKVLIADEPTGNLDPQTSDEIVDILERINANGTTVIMATHNKDIVNERQHRLLEIAGGRLVRDEEGGTYGNEE
>NC_017482.1|WP_005684490.1|903320_904208_+|ABC-transporter-permease
MKSKVFFRHVKDSLRSLRRNGWMSVAAVSAVTVTLLLVGIFMALIFNLHHISQQVENDVQVRVYIDKKTTTKQRDDLKDKLKKLDHVNKVTYRSRQQELDTIIGGYGSQWRMFSGDQNPLSDVFMVKTNSPKATISVSKEAQKLDHVVDASYGGRTAKKLFNSVDVAQKWGLAFTILLLFVAVFLINNTIRITILSRSDEIRIMRLVGATNSYIRWPFLLEGAWTGLFGAVLPIIIVDVGYAIVYRSFTYANGASGYTLYANMPFLFWLDLMLAGIGIVIGALGSVISMRRFLKF
>NC_017482.1|WP_014569359.1|904285_904423_+|hypothetical-protein
MGGFNEWQYDVLNTQAYVENNSYMLIDGTKMAVFRHFLVDEPKTL
>NC_017482.1|WP_014569360.1|904478_905576_+|PDZ-domain-containing-protein
MAVIIALLISPIGAVFWLALGLTILYAVSRTSRERHQYLRAIHPQHSEIAPFFWVGILLGIVISALMLVARLQVSLPALLALSGSTLVGLIFSGWRFSPWWLGLAGLVELLRPTTSQMSADLAVLVGVLWLAQALIARLNRGAQIESPVILQDRRQRQQVAFRLRQFYWVPLFLPVSVDQVAGLPLLSIATDTFVAVGLPLVLGAAFTTQRDRVQPYLRRSWPWFAVAGGGLIVFGLVGRILTMPAMTIALVPVLVSLILGAGLVWQAHQVHLNVTQTNHGVVVIGVVPQTPAAQMDLQPGDRVLTCNHIAVNNAAELYNAIQKEPTYCRLRLQQADGEIRLAETAIFAGAPHELGMILFPEETA
>NC_017482.1|WP_005688690.1|905572_906277_+|response-regulator-transcription-factor
MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLDVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQSQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDALLNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE
>NC_017482.1|WP_014569361.1|906269_907937_+|signal-transduction-histidine-kinase
MNKRILRRVLVISLLSLAGFFVLVTTVNQQIVHQQARDLRRVARTYAASAKDGVDPQALAKSEAAFITVVPDNPKTTRQKVMADALRGNHREPFVTTVNVLGRAEQAYLFRHRGHWVAVSRYKSSVWTTAPEQFWILTLTFAVLIALILAWLFRSEHQYQEAIRVMSHNLDRIRQKKEPEPVILPPQSPFTPVARRINALAAEQTHLREKVAVRQSSFDRLIDNLPLGVMLIDTNKDVILHNHAMSQLLGHQIPQPRHNYLDDVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRLQVLVILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLPVSKRQQQD
>NC_017482.1|WP_005684496.1|908026_908893_+|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein
MKKIVTLFSIVFLALLASACGSSHSSKQSGESITAVGSSALQPLVEAAGEQYQTEHLGVFINVQGGGSGTGLSQIQQGAVDIGNSDLFAEEKPGIKANALVDHKVAVVGIAPIVNPKVGVKNVSMTQLQQIFLGQITNWKQLGGKNVPIVLVNRAQGSGTRATFEKWALEGKQPIAAQEQDSTGMVRQIVGSTPGAISYVAFSYVDKTVRSLSVDGVAPTDSNVATNRWHIWSYEHMYTKGRPSGLTKRFLTYMMSPAIQKKLVQKMGYIPMTKMKVVRNASGQISRP

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Crispr_ID: NC_017482_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017482_2

2260261-2261880

TypeII

Consensus_repeat	Method
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRISPRCasFinder
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	PILER-CR

24 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_017482_2

>merge|NC_017482|2|2260261-2261880|CRT,CRISPRCasFinder,PILER-CR
CACTGAAGTTTTTTTGATCTGACATCTACCTGAGACTATTCAAACTGCATAGCAACTTTTCCAAGTATTCTTGAACTGATTGATCTGACATCTACCTGAGACGAGGCATGTTAGACGTCATATTTGCTGAAACCTCTTGAACTGATTGATCTGACATCTACCTGAGACTCTCGACAACAACCCGTTTTGGCACCACAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGAAATAATTGTTGACACGTGAGAACACAGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACACTGGCATCAATCATCATGAAGTATGCGATGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTAGTGGCAGAGAGGTAATGATGATCACACGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGCATATAGCTTGATATTGGCCGCAAGCTCGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTTCTGTCGGGTTTGTGGAATGGCACTGTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGTCTAGCCCGAGAAGTTCCGCGGCTTTTTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCATAAGGTGGCAGCGGCCATTTGTGTTTTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTTAAATGCGTATTTTCTTTTCTCAACTGTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCGCAGTCTTGCAAGCCGTAATGCTCGATCTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCCCATAGGCCTAGCTGTCGCCCGTAAGGCGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACACAGCCGTCTTGATCTTGTCAGCATCACCCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGGGGCTTCTGCAATCTGGAATGCCCTTGGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAGAATACTACCTTTTGGCACAATATTATTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTCAATCGTCATGCCAAGCGGCATAGCACCTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAGTGATCATATTCATGCAACACAAACGGTGCTCTTGAACTGATTAATCTGACATCTACCTGAGACTTGACAAGTCAAAGTGCTCATACAAGTATGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGAACTCATCGCTTACCGGCAACCAGTCATGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGGTGGCATCACAGAAGCAACCGAAACAATCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGTGGTAAGGTCCCCAAAGATTCGATGATGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAGCATCCTATATTTCCATGAATACTGATGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGCAATCCAGAAACTCGGGATCGTTTCTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NC_017482|2|1|2260261-2261880|CRT
CACTGAAGTTTTTTTGATCTGACATCTACCTGAGAC	TATTCAAACTGCATAGCAACTTTTCCAAGT
ATTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GAGGCATGTTAGACGTCATATTTGCTGAAA
CCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCTCGACAACAACCCGTTTTGGCACCACAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAAATAATTGTTGACACGTGAGAACACAG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACTGGCATCAATCATCATGAAGTATGCGAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTAGTGGCAGAGAGGTAATGATGATCACAC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCATATAGCTTGATATTGGCCGCAAGCTCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTCTGTCGGGTTTGTGGAATGGCACTGTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CATAAGGTGGCAGCGGCCATTTGTGTTTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTAAATGCGTATTTTCTTTTCTCAACTGT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCAGTCTTGCAAGCCGTAATGCTCGATCT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCCATAGGCCTAGCTGTCGCCCGTAAGGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACAGCCGTCTTGATCTTGTCAGCATCACCC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGGGCTTCTGCAATCTGGAATGCCCTTGGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGAATACTACCTTTTGGCACAATATTATT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCAATCGTCATGCCAAGCGGCATAGCACCT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTGATCATATTCATGCAACACAAACGGT
GCTCTTGAACTGATTAATCTGACATCTACCTGAGAC	TTGACAAGTCAAAGTGCTCATACAAGTATG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAACTCATCGCTTACCGGCAACCAGTCAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGTGGCATCACAGAAGCAACCGAAACAATC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGTGGTAAGGTCCCCAAAGATTCGATGAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCATCCTATATTTCCATGAATACTGATGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGCAATCCAGAAACTCGGGATCGTTTCTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NC_017482|2|2|2260327-2261880|CRISPRCasFinder
ATTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GAGGCATGTTAGACGTCATATTTGCTGAAA
CCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCTCGACAACAACCCGTTTTGGCACCACAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAAATAATTGTTGACACGTGAGAACACAG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACTGGCATCAATCATCATGAAGTATGCGAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTAGTGGCAGAGAGGTAATGATGATCACAC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCATATAGCTTGATATTGGCCGCAAGCTCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTCTGTCGGGTTTGTGGAATGGCACTGTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CATAAGGTGGCAGCGGCCATTTGTGTTTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTAAATGCGTATTTTCTTTTCTCAACTGT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCAGTCTTGCAAGCCGTAATGCTCGATCT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCCATAGGCCTAGCTGTCGCCCGTAAGGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACAGCCGTCTTGATCTTGTCAGCATCACCC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGGGCTTCTGCAATCTGGAATGCCCTTGGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGAATACTACCTTTTGGCACAATATTATT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCAATCGTCATGCCAAGCGGCATAGCACCT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTGATCATATTCATGCAACACAAACGGT
GCTCTTGAACTGATTAATCTGACATCTACCTGAGAC	TTGACAAGTCAAAGTGCTCATACAAGTATG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAACTCATCGCTTACCGGCAACCAGTCAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGTGGCATCACAGAAGCAACCGAAACAATC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGTGGTAAGGTCCCCAAAGATTCGATGAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCATCCTATATTTCCATGAATACTGATGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGCAATCCAGAAACTCGGGATCGTTTCTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NC_017482|2|1|2260789-2261880|PILER-CR
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GTCTAGCCCGAGAAGTTCCGCGGCTTTTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CATAAGGTGGCAGCGGCCATTTGTGTTTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTAAATGCGTATTTTCTTTTCTCAACTGT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCAGTCTTGCAAGCCGTAATGCTCGATCT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCCATAGGCCTAGCTGTCGCCCGTAAGGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACAGCCGTCTTGATCTTGTCAGCATCACCC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGGGCTTCTGCAATCTGGAATGCCCTTGGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGAATACTACCTTTTGGCACAATATTATT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCAATCGTCATGCCAAGCGGCATAGCACCT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTGATCATATTCATGCAACACAAACGGT
GCTCTTGAACTGATTAATCTGACATCTACCTGAGAC	TTGACAAGTCAAAGTGCTCATACAAGTATG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAACTCATCGCTTACCGGCAACCAGTCAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGTGGCATCACAGAAGCAACCGAAACAATC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGTGGTAAGGTCCCCAAAGATTCGATGAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCATCCTATATTTCCATGAATACTGATGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGCAATCCAGAAACTCGGGATCGTTTCTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017482.1\|WP_014569971.1\|2257801_2258227_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759
NC_017482.1\|WP_015765030.1\|2262577_2262883_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NC_017482.1\|WP_014569978.1\|2268341_2270069_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NC_017482.1\|WP_014569970.1\|2255895_2257590_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NC_017482.1\|WP_014569981.1\|2274454_2275759_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NC_017482.1\|WP_014569977.1\|2263971_2268063_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NC_017482.1\|WP_014569968.1\|2251073_2252909_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NC_017482.1\|WP_014569979.1\|2270049_2271792_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NC_017482.1\|WP_005713168.1\|2246398_2246794_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_017482.1\|WP_014569972.1\|2258412_2259513_-\|hypothetical-protein	unknown	unknown	unknown
NC_017482.1\|WP_014569964.1\|2247642_2248287_+\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NC_017482.1\|WP_014569976.1\|2262860_2263766_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_017482.1\|WP_005684687.1\|2253276_2254149_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NC_017482.1\|WP_014569969.1\|2254280_2255903_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_017482.1\|WP_014569982.1\|2275858_2276878_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|238645
NC_017482.1\|WP_014569963.1\|2246783_2247650_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_017482.1\|WP_015765029.1\|2261900_2262581_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NC_017482.1\|WP_014569980.1\|2271788_2272802_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NC_017482.1\|WP_005684670.1\|2272798_2274223_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NC_017482.1\|WP_014569965.1\|2248352_2249138_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181585

Protein	Function_ID	Function_description	E-value
NC_017482.1\|WP_014569971.1\|2257801_2258227_-\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	2.11116e-34
NC_017482.1\|WP_014569980.1\|2271788_2272802_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	1.16785e-90
NC_017482.1\|WP_014569978.1\|2268341_2270069_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.18641e-159
NC_017482.1\|WP_014569970.1\|2255895_2257590_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.53038e-90
NC_017482.1\|WP_014569981.1\|2274454_2275759_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NC_017482.1\|WP_015765029.1\|2261900_2262581_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	9.75483e-69
NC_017482.1\|WP_014569968.1\|2251073_2252909_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NC_017482.1\|WP_014569979.1\|2270049_2271792_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NC_017482.1\|WP_005713168.1\|2246398_2246794_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	2.42647e-31
NC_017482.1\|WP_014569964.1\|2247642_2248287_+\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.00038148
NC_017482.1\|WP_014569976.1\|2262860_2263766_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.44045e-93
NC_017482.1\|WP_005684687.1\|2253276_2254149_-\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	3.27666e-43
NC_017482.1\|WP_014569969.1\|2254280_2255903_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.27333e-94
NC_017482.1\|WP_014569982.1\|2275858_2276878_+\|adenosine-deaminase	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	4.06116e-119
NC_017482.1\|WP_014569977.1\|2263971_2268063_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	8.82172e-119
NC_017482.1\|WP_014569963.1\|2246783_2247650_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.08913e-59
NC_017482.1\|WP_014569965.1\|2248352_2249138_-\|SDR-family-oxidoreductase	gnl\|CDD\|181585	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.	1.0824e-173
NC_017482.1\|WP_005684670.1\|2272798_2274223_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NC_017482.1\|WP_015765030.1\|2262577_2262883_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.60312e-22

>NC_017482.1|WP_014569972.1|2258412_2259513_-|hypothetical-protein
MKKVAIIGATLLLSVGLVACSGGSGSSSSKSSSTTSQTSNAKVKIKTGADANAKVPAAGTLMMRQLYAAPHGKQSFAAVNVTLNGDTIVSARINEFQYVKKSSDWTGVPNSNKDFGKNYPSGQILIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKISDLKAAVAEVKGTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDTNLTEGQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPAKDFGAVPNSNTDFGKGIKAGTVLASKRANSDAYSAIMKSKGKATKTWQENSTAIDEFAKGKTVAELETAVSDLKGKKKASDVVSGATFTDTAGYLAAIIKAAKAAK
>NC_017482.1|WP_014569971.1|2257801_2258227_-|NusG-domain-II-containing-protein
MRWLKRYVRPLDYIIVVLLFIACFIPAGIFSLTEANVNTSQKVAVISVNGQVKRRIKLGAHTRHQQFTLYPAKGQYNIIEVEGERIRDKEDNSPDQIAVHTGWISRIGQQSICLPHKLLIEIKPAQGNHGSNGDAGGLVHP
>NC_017482.1|WP_014569970.1|2255895_2257590_-|ATP-binding-cassette-domain-containing-protein
MFGLLKYGRDQRWAGVIEAIFDWLPTLLPILIALNLGTGHQVAALVTTLVLMAVWLGYVVGYELHHRHAWAMSAKRELRDRYFTALYQRNDAVATTAADHAVIQRDLGGLNNLDMFYSTLFPTILQAGMTFLVLIGLSFWYRSWLALLPFGCVFLIGLAMMFLGKRMSAQNKAHLSGFLKMGGRFMDDLRGMTTLVMYDAADRYAQKFADDSEFFRQATMNLLKTQLQTLFVINGFGYLTVFAGGFITAVQLVAGQLPVAGAFATWFTLAMMMVNARQLGYFVHVVKSNGPSLAAILATIAKAKEVPDTVKITDNRPLSQITLDQVNVGYAADAPLVTGINATLVPGKLYGLAGENGTGKSTLIQAILGRLKPLSGAIMADQTAVSALSNVQQAAVFGYVSANEYLFSGTIQENLLLGNRFGDQWQAKLASLGLMQFVPSLEKGYATQVGENGRLLSPGQRQQLAFARMLLADKTVYLLDEITSSIDEANEAIILQAVKKLSRHKIVLFISHDLKAMTQADEVWFIHDHQLTVANHQTLYQKQPAYRQLVDNPEMMENEVNPND
>NC_017482.1|WP_014569969.1|2254280_2255903_-|ABC-transporter-ATP-binding-protein
MIRGLLRYTHHLTGAIFISFLIGMVAELAKVVVLVLAAMMLFDPQNAGQLLLPGLIAIILLGLGSFGEQYSGHYVAFHVLADLRGAVYRQLVKLAPAKLDTQASGKSLKLIGSDIEAMEIFYAHTLVPVAIGLVYGLLVVGIYSQLNWLAAIIALISYVAVGMVVPYARHRQLTAKIQAADRLKAANQQYLLESVRGMAVVRQLGIAKQRMTKGNEGFDQEATAFQQTQFSQLLKNVAATVVIVGGWLLMIWLSGWPQPTTIQQALFAIFPLTFGPLLALNNLPGSLLNGFAAAKNLFKLLQEQPLNAALPNATQTVTTINQIQVDHVAFSYPIRPEAVLKDVTLTLNAGEIVGFVGASGSGKSTLAKLIMGWYPVSHGQILIDGNDLATIKPTALRNQKNYLPQTPVFFSESVRDNLTLHDPAITDQQIWTVLDQVKLRARLEQMSHGLDTVVAASHVPFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILEAIKTYYHGIVILISHRPESAAFADRVYRFAEHQVVLATE
>NC_017482.1|WP_005684687.1|2253276_2254149_-|PRD-domain-containing-protein
MIIDAILNNNAVVVRRDKRDIIVVERGIGFHAKKGDQLTLQDSMKVYVPEDHAKLKIAMATIASLPDEYLTIAARIIQEAEVQLHTKFNSYLLIELADHIHFAVTRLHEQLILHNKLLWEIQIAYEPAFRMGEWALTEIANQIGEQLPEDEAGFIALKFVSNDLSQQHPVNSVAFTQMLANITKIIFYQLGLNMNAKTPEYQRLVIHLKFFLQRVYATSTAKTPVSPEPYDQALLAHLQQDYTQAYRCMEDVVKFMQQKLPGPISKNEQIYLTLHIARLAKSQGQSLKSS
>NC_017482.1|WP_014569968.1|2251073_2252909_-|PTS-glucose-transporter-subunit-IIA
MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPSLSDGTEGPATVTHEKMTFKRAFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPSIDFFGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVAALASILSLPTYLGKGFGVSVIGDVVAFVLGVGLTLAFGGINAPAKKQAAAKVVADHAETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEEDVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVTMIVTNSDQYQVETRSDGATDDDALMTLA
>NC_017482.1|WP_014569965.1|2248352_2249138_-|SDR-family-oxidoreductase
MYRDLNGKVAVVTGGSKGIGAGIAERFGKEHMAVVINYLGDHEGARKTADTVIKNGGQAVSIHADVSTEAGIASLVKTAESEFGRLDVWVNNAGMEIKAPTHEVSLDDWNKVIAINQTGVFLGARAALNYFLDHHQPGNIINITSVHEQIPWPTFASYTAAKGAVKLFTETIAMEYANRRIRVNAIGPGAIETPINAEKFADKAQYDQTVAMIPQGRLGKPEDVAAGAAWLASTESSYVTGTTLFIDGGMTLYPAFKDGQG
>NC_017482.1|WP_014569964.1|2247642_2248287_+|ABC-2-transporter-permease
MRDLVKLVGLDLAVFHTNSKKYFWFGTLISIVLLLLPFLNGDLATPLAGGITGLSIGLLMMPFVGVDRQGMENLYTMLPVRRTTIVAGHYLFGLMTVGLIDACSMLIIGLGWMARVNPIRDSQAFGWMLCFGTALMLFQIILSFPLMIGLGFKRAPLAAYFPLAILLIAIFLERSFQVDLDALKPWFGVIVAIFISAFIFSWWLSTMLYKKREF
>NC_017482.1|WP_014569963.1|2246783_2247650_+|ABC-transporter-ATP-binding-protein
MTTDLLTVSHLNKHYEDFHLADVSFHLPAGYIMGFIGPNGAGKTTTIKAILDMLQPDSGAINLLGQTTVAARKQVRDQLGVVLDGMVYPDSWQSTAVNRFVGPFFPSWDAVYFKQLCHDFAIPEKTKYRDLSMGTKIKLQLAAALAHHPQLLILDEPTSGLDPIARDELIAILQDFISDDQHSVLISTHSIIELAKVADYVTYLLAGKVTFTGPLSDLLDRYIMIKGGPNELTPGIQATIIGLQQSRVGFSGIWPADQADQLPDSIVQETVDLETLMIAFGKGRRAHA
>NC_017482.1|WP_005713168.1|2246398_2246794_+|GntR-family-transcriptional-regulator
MRIVISNQSGKPIYEQIEDQVKTAILAGQLKANEQLPSIRSLAKDLRISVITTTRAYHELEAAGFITNVQGKGAYVLGQDSALVRENALRDIEASLNQAIDTAKMAKITPAELHTMLDTLLQAEGEADHDN
>NC_017482.1|WP_015765029.1|2261900_2262581_-|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSVITVIDTGLPKVLLDLVQAFRNDDDGIVLSNEQMQIQELRKASLWIGDPVLELDLDKLFQRLIIKKVSQLIEDRRLIELIEQSQRLAMSLLREPLLSELPVTVEPGGKLEQIMKYCNVHFDEEVLTEPFSKVEAAIKTLAKLEEKRLVIFTNISHYLDVDSLNKLLDQVKETSLELLLIEFSDVERRKFFERCQYIYIDKDFMDSRELID
>NC_017482.1|WP_015765030.1|2262577_2262883_-|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVATSKDRRNYRRFRRALIDEGFLMIQYSVYVRVCKTKKSAAYMEQRIATVKPPTGIVQTLMVTEAQYQSMHFMVGTEKQDIRNSADRTVMI
>NC_017482.1|WP_014569976.1|2262860_2263766_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSFIITQHCKVTTKQHSLVVQTNGEVYTMPIDDLNQVIFTTTRALISADAIAALADANAKVIFSGRDGQPVTETKNLYSDRRRAEQVRLQVNWPLDLIETVWTKIVAAKISNQAQVAKLCGHDAQGLLDDLDALEINDVSNREASAARRYFKLMFGDDFSRSDICATNAALNYGYSVLLSTTNRAIVSTGHLTEVGLHHHSASNPYNLGSDLMEPFRPAVDYWVAQHRIKELTPDVKYGLIDLLNLEITFNGKKALLQNAVADHVENCLAFLDGKAKVCRIEVKFPDEVSSHAINDHV
>NC_017482.1|WP_014569977.1|2263971_2268063_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKLNQPYGIGLDIGSNSIGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRRLSRTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEISPKDKDRFKYEKRLFNDRTDAEFYEDYPSMYHLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYPDLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEFAKAITGLKTKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAGMSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTKEVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPIQLQQRELDQIIANQSKYYDWLAAPNPVEAHRWKMPYQLDELLNFHIPYYVGPLITPKQQAESGENVFAWMVRKDPSGNITPYNFDEKVDREASANTFIQRMKTTDTYLIGEDVLPKQSLLYQKYEVLNELNNVRINNECLGTDQKQRLIREVFERHSSVTIKQVADNLVAHGDFARRPEIRGLADEKRFLSSLSTYHQLKEILHEAIDDPTKLLDIENIITWSTVFEDHTIFETKLAEIEWLDPKKINELSGIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLSNHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQDPSWLFIETADGTGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLYFMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFAGKMKATWRKWHEAGLISGRKLRNLMLRPDEIDKFAKGFVARQLVETRQIIKLTEQIAAAQYPNTKIIAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVKKFREFNFIGALTHAKKNIIAKDTGEIVWDKERDIRELDRIYNFKRMLITHEVYFETADLFKQTIYAAKDSKERGGSKQLIPKKQGYPTQVYGGYTQESGSYNALVRVAEADTTAYQVIKISAQNASKIASANLKSREKGKQLLNEIVVKQLAKRRKNWKPSANSFKIVIPRFGMGTLFQNAKYGLFMVNSDTYYRNYQELWLSRENQKLLKKLFSIKYEKTQMNHDALQVYKAIIDQVEKFFKLYDINQFRAKLSDAIERFEKLPINTDGNKIGKTETLRQILIGLQANGTRSNVKNLGIKTDLGLLQVGSGIKLDKDTQIVYQSPSGLFKRRIPLADL
>NC_017482.1|WP_014569978.1|2268341_2270069_-|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWIRPDLKRYRWLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGVGRPVFQYAERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWILLLLLFQILILPWWGLVVERFRKAEQKRLNHDAYVSLTDSVLGLSDWVITHRDQDFMKQSLAAPKKLAASTAKSKRFQWGRDFIGQLLFALIAVSMLIWTNLEWTGNQSMANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLHPVTRELPQQQSVPTTFNKIELNDVSFRYTPSDPELITNIDLTIQAGEKIAILGPSGMGKTTLLQLVLGDLTPTNGHVLIDGQDVLDYQNHRTNLFAVLDQSPFLFNTSIVNNVRLGNEDAGDETVAAALKAVKLDQLVAQLPNGMNSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLDTMFTVLKGKTILWVTHHLQGVSQTDRVIFLEDGRLTMNDSPQHLAEQNKRYQNLYALDAGLR
>NC_017482.1|WP_014569979.1|2270049_2271792_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLLRLSGMRKTMTMLAGFALVQAFVILLQGKYLAEGIVHSWNRQSLAGLWLPLGLFAAAFTVRQLIVWVRNRIAAKFAMKSAAWLQAQLLRHLFALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKILNMSIIPWILVAYIWYENWLTGFTLLIMFPIIILFMVILGLAARDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISREYANNVYEVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMTAIWKVIDQPLPTDTHVLPAFKGWQPQDTLSMQHLDFTYADKRAGIQDANLTFTGPEKIAIIGASGSGKSTLLNLIGGFLQPQAADITVRGTKIPHMTQTAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDQAVRDAAESAGLTTWINSLPDGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAALKETLVPLFANRLVIFATHRLHWLNQMDRVIVVDGGKIVAEGTPTELAAHSKPYQALVHEMRGEFNALVEK
>NC_017482.1|WP_014569980.1|2271788_2272802_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLAHNSDEEDQLVATIGPHWDGNEVWLITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKTGRNIWRWALACGSLIPPFILGMIFTAIIQPLPITKNGDVFPTLGNQINLLTIVGGVAVTLMMLMHGLNFICLKTTGDLRKRARDWNSKLYYLLYAGEVVFAVLLFFMTDFFKERPISTLLILVVIVGSTVAAHIGVLKDNEVLSFIGSALGLVGVVGVIFNGLFPRVMIGQNAAMSILAKDASASPLTLTIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE
>NC_017482.1|WP_005684670.1|2272798_2274223_-|cytochrome-ubiquinol-oxidase-subunit-I
MLMAMDVLSLARFQFAMTTVFHFFFVPFSIGMGLVAAIMETMYVRKKDETYKKMAKFWGKIFLLSFAVGVVTGIIQEFQFGMNWSNYSRFMGDIFGVPLAIEALLAFFMESTFIGLWMFTWDRFKPAVHAIFIWMTWLGTTLSAIWILSANAFMQHPTGFAISQTTGRVKLVDFGAVITNPQLWVEFPHVIFGAFTTAGFAVAGMAAWRLLKKDHVDFYKKSLKVGLVVGTIASACAIGFGDLQTQFIIKDQPMKFAATEGIYKDTSDPAPWTLVELINTKDHTTSGNIEVPYLLSLLSYHKMNGSVKGMETANKELEAKYGKDKNYYVPVKTLFWSFRVMAGGGVLLFLLGVLGLWFSRKKKDTLLDQRWLLYILGFALWLPFIINTAGWFITELGRYPWVVYGLYTIADAVSPTTTAGQLLFTNICYFLIFTLLGGVMIYYSHRVLKNGPDGDLNTDYGVNSDPFAKEAFAK
>NC_017482.1|WP_014569981.1|2274454_2275759_-|pyrimidine-nucleoside-phosphorylase
MRMVDLITKKRDHGELTDDELTWMIQQYTAEKIPDYQMSAFLMAVYFNGMSAAERDHFAFAMLHSGDVLDLSDIPGIKVDKHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGTLDKLESIPGFNVNETEAQFKCQVQTLHQAIVSASRDVAPADRRIYALRDVTGTVESIPLIAGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQSAGVKSVALLTDMNQPLGITIGNSLEIAESIAILKNRGPRDVHDLTVALAAQMLVLGKKAPSLEIATGLAEDALRDGRALNAFKQLIQAQGGDPAVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQLGGGRAQKGDKLDLAVGLVLHKKLGTPVTKGDTLVMLHTNDQHVDAIVELVRQAYHIGTTAPKKLPLIHEVIRP
>NC_017482.1|WP_014569982.1|2275858_2276878_+|adenosine-deaminase
MDFATLHTLGKTELHCHLDGSLSLNCIRQLAQKINQPLPADDNALRKLVQAPENSENLADYLKTFDFIAPLLQTKEALQMAAFDVVAQAARENVRYIEIRFAPVLSTAGDLTLSQATEAVIAGLHQAMAQFDIIAKALVCGMRQLPNADNAAMFTANAPLVGDTLVGGDFAGNEADYPTKVCAPAIETAQRLGVPLTFHAGECHCPQNIAEAIRLGIPRIGHATACFDQPELIQTIVKTHTTIELCLTSNLQTKAARSLAEFPYQALKKAGAAITINTDNRTVSNTTLTHEYERYQAYFDTTTADFLTFNLNAVNAAFIPETTKQTLRMRLKQDYAPYL

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Crispr_ID: NC_017482_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017482_3

2509314-2509467

Orphan

Consensus_repeat	Method
CGGCCATTGTGACTGAGGCCGCTTATGTTCCGGCTTACTCCCATAACGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017482_3

>merge|NC_017482|3|2509314-2509467|CRISPRCasFinder
CGGCCATTGTGACTGAGGCCGCTTATGTTCCGGCTTACTCCCATAACGCGCTCCCCGGCGCAGAAGTCTGCGTGTAAGGACCTTAGCCGCAATGGCCAAAGACCGGCCATTGCGACTGAGGCCGCTTATGTTCCGGCTTACTCCCATAACGCGC

>NC_017482|3|3|2509314-2509467|CRISPRCasFinder
CGGCCATTGTGACTGAGGCCGCTTATGTTCCGGCTTACTCCCATAACGCGC	TCCCCGGCGCAGAAGTCTGCGTGTAAGGACCTTAGCCGCAATGGCCAAAGAC
CGGCCATTGCGACTGAGGCCGCTTATGTTCCGGCTTACTCCCATAACGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017482.1\|WP_107755086.1\|2515241_2516135_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_017482.1\|WP_005711219.1\|2517863_2518481_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_017482.1\|WP_014570110.1\|2497969_2499484_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NC_017482.1\|WP_014570115.1\|2506735_2507437_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_017482.1\|WP_005686771.1\|2517150_2517597_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NC_017482.1\|WP_005714589.1\|2518561_2519620_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_017482.1\|WP_005687781.1\|2513684_2514869_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_017482.1\|WP_014570119.1\|2516086_2516623_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225511
NC_017482.1\|WP_014570111.1\|2500121_2502845_+\|family-78-glycoside-hydrolase-catalytic-domain	unknown	unknown	gnl\|CDD\|379971
NC_017482.1\|WP_014570109.1\|2497055_2497466_-\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|223317
NC_017482.1\|WP_014570112.1\|2503050_2504025_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
NC_017482.1\|WP_014570120.1\|2519621_2520332_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_017482.1\|WP_003567483.1\|2516744_2517137_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_017482.1\|WP_014570108.1\|2496711_2497062_-\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|376809
NC_017482.1\|WP_014570116.1\|2508488_2509157_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225917
NC_017482.1\|WP_005687784.1\|2509847_2511683_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_017482.1\|WP_014570114.1\|2505497_2506739_-\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NC_017482.1\|WP_014570117.1\|2511669_2513460_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_017482.1\|WP_005716598.1\|2507429_2508248_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|183100
NC_017482.1\|WP_014570113.1\|2504014_2505547_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341249

Protein	Function_ID	Function_description	E-value
NC_017482.1\|WP_107755086.1\|2515241_2516135_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.86009e-40
NC_017482.1\|WP_005711219.1\|2517863_2518481_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.04691e-15
NC_017482.1\|WP_014570110.1\|2497969_2499484_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	9.98351e-95
NC_017482.1\|WP_014570115.1\|2506735_2507437_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.98506e-81
NC_017482.1\|WP_005686771.1\|2517150_2517597_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.77819e-91
NC_017482.1\|WP_005714589.1\|2518561_2519620_+\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	2.13492e-05
NC_017482.1\|WP_005687781.1\|2513684_2514869_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.62104e-48
NC_017482.1\|WP_014570119.1\|2516086_2516623_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.14956e-10
NC_017482.1\|WP_014570111.1\|2500121_2502845_+\|family-78-glycoside-hydrolase-catalytic-domain	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	8.83905e-23
NC_017482.1\|WP_014570109.1\|2497055_2497466_-\|CrcB-family-protein	gnl\|CDD\|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	1.46664e-21
NC_017482.1\|WP_014570112.1\|2503050_2504025_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.90834e-97
NC_017482.1\|WP_014570120.1\|2519621_2520332_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	4.30592e-90
NC_017482.1\|WP_003567483.1\|2516744_2517137_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.81522e-83
NC_017482.1\|WP_014570108.1\|2496711_2497062_-\|CrcB-family-protein	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	2.42749e-20
NC_017482.1\|WP_014570116.1\|2508488_2509157_-\|hypothetical-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	9.98266e-31
NC_017482.1\|WP_005687784.1\|2509847_2511683_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.82276e-67
NC_017482.1\|WP_014570114.1\|2505497_2506739_-\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	4.22938e-18
NC_017482.1\|WP_014570117.1\|2511669_2513460_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.95537e-65
NC_017482.1\|WP_005716598.1\|2507429_2508248_-\|ABC-transporter-permease-subunit	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	1.18716e-87
NC_017482.1\|WP_014570113.1\|2504014_2505547_-\|AMP-binding-protein	gnl\|CDD\|341249	cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis. FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis.	0

>NC_017482.1|WP_014570116.1|2508488_2509157_-|hypothetical-protein
MNFIIDPKVLALGVKIRGVELTGIDNHHYPQALKQAISTEIATVLETLNRDQIKQDPIIQGFWDLHRAVHLPKRNNTPAPATLLKLILKRGELVPINPVVDLYNLISIQSHLALGAHDIAHIDGNVNLRLTDGTERFVPIGADGQPEPVKAGEYAYVDDSNEIICHLETRQVEKTKVTPETTHLYYIVQGNENTSQALVDQTAQRVIDLTTKYLGGQGKLLN
>NC_017482.1|WP_005716598.1|2507429_2508248_-|ABC-transporter-permease-subunit
MQEVTTLTQEPKKRVKPSVNWLKILPWLVPLAFLMSWQAAVSFNWVTSSLIPAPSTVIQDGISLWQSGELPKNIAISLYRATAGFAIGGSVGFALGLINGLVKPIRALLDSPIQMLRNIPHLSLIPLMIILMGIGEPAKIALVAIGVMFPMYINTYQGIVGADPELLEMGRAYGLSRRALFTRVVFPGALANILMGVRYALGVMWTTLIVAETISATSGLGYMATNAQEFMRMDTVLLCILIYALLGKLSDMIAKSLERLFLGWRQGGTEND
>NC_017482.1|WP_014570115.1|2506735_2507437_-|ABC-transporter-ATP-binding-protein
MTNPIVKLQHIEKVYGDKTVLHDIQLNLYPGEFLALVGMSGGGKSTILRLIAGLEAPTAGKLTRENDLVMRVMFQNDRLLPWLTNLDNVSFKNHDPAVVKEAKSLLKAVGLADKSDGYPAQLSGGQKQRLALARALLAKPQLLLLDEPLGALDALTRQRMQDLILHIFTTQKLSTMLITHDVNEAARMADRIIVVKDGQLVTETAGARGESPEVIAQTAARVLKAILAEPVTV
>NC_017482.1|WP_014570114.1|2505497_2506739_-|acyltransferase
MKQVQATANATTAKPTKHRYLYEIDLMRLIFIAGVLLNHTTTAFQHQMSSGFASTALLATHLMIHFTRMGFMFMTGLVLTMVYYSRQRNWPRFFKKRFTTVGVPYVLWNTILMISAVLLGIGGFTVANFWPDYLSALLHGDQFYLYYVLVTLQLYLLFPAMLWLFKKTEKHHGALLLASFTLQLLIVAGIKYGLPHIDTSHWLWWFRAYGVNVVTYQFFFIAGGLFSLHAQAIKTWLMSHQRLIGWSTLFLSLGTVGLYGFNKQILGLTHSAAVSPHQPYMLVYDVVMIAFVAILGQKYARWHAKQPTHWFARLVGHGAQVSFGVYLCQTIAITLLGGVLELVHLSNLMLMLLLPLGYLSILGISFAIAWFCYKVSPFGWLIGRPQSLLLATKGVLNHEQTHRSVISESHQSS
>NC_017482.1|WP_014570113.1|2504014_2505547_-|AMP-binding-protein
MSKLTDQLSQNLINHRDYPLVKSVEANTWYTGRDLEEDVAALRDQFAEQKIGAGDQVLIALPNSPVFLPLNQALWEIGAVAHPIAAKTPLPELLTEWETYHYQAVITLPTVGKALEAPLVPWEKVQLHTISELAILTDASQLAYRINAPQARPQEDDLALILNTSGTTGKPKRVGLTHRMLLNAALHDAKSHALSPDDTAMVVMPMFHINAQVISVLATRLSGGKLVIAPKFSASGFWPTIETNHVTWVSVVPTIISILLMNQQALAAYNSNIHLRFVRSSSFALPEDKLVAFQSHFHTQVLEGYGMTETASQSTLNPIHAPKIGSAGKPVGTELRIKLADGTFTKKPFVEGEIVLRGDHVIHDYLEPHPESFENGWFLTGDLGYLDQDGYLFVKGRRKEMINRGGEKVAPAKVENVLNELDWVAQVAIIGLPDNLYGEAVTAVVIRQDATEDPQKAKLDLLNFARRHLAAYECPTEVVFVKAFPVNATGKVLRPKLRKQLMQGGKLYEA
>NC_017482.1|WP_014570112.1|2503050_2504025_-|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein
MKRKLRLVLLLVGLVAWLSVAVYGYTQTATASSNLETVTIGYQKADPVDIARQRGELAKKLKAKGYQVEFKEFSDGAALMTALKSGAIDYARVGDTPPVTAKATGTDIALIAAGATKEYGSGILVGKNSGITSLEQLKGKTIAYQKGTAAQYLIIQALKKAGLSTSDVKLVNMDQSSASVAFAKGSVDAWVTWDPYTSTAQVNQGAKLLTNGTGLTKNRDFLISTQSYAKTHTSLSKLLTTELNDDMTWANSHHTQLIAMLSKTLNLSDKVIKKMVERRTYSMTLISANSSIVAEENAIADVFYQDGVITTKVDMKTTLVSDSN
>NC_017482.1|WP_014570111.1|2500121_2502845_+|family-78-glycoside-hydrolase-catalytic-domain
MPNITPSLLAPDHLRVNLQHFAYNVQTQPHFSWWNHSNRTGASQSAYQLTVFQRLQDRQDHKYLYDSGWVTSSNNTAVTAAKLSDQLVAGQLYYWQVRIKDNAGNISDFSQPAKLICADPSLPVKHGIWRQPQPKTAQELAHIGQVVFLRSPQLKINPSEVDTAIIVAVARGNEPVFAQSFDLYLNGHCLGVGSARQQEHDHGTEKTAIYYNVYEATDFLQDGANTVAALATASSDKQAFWCQLILYKHDGTKEVATTTDNTWRALDGSSAFGDYGVKIRTQYFGMVSENIDMRYYPQNWTSSAFDDHDWPLAWQNPHQMIADNEVLVPYRSENTERVEVHDRNKRVVTFSDQNYLLDLGKEIIGGLKVNLFSAFDQRVTVMMGEQLNDDGHVRHEMACGPDYIENWALVKGQNQFTTLQMKNFRYVELVGFEGDLPLDAINGWAMQQAFPDNESRFDSDSELLNREYELSKYTIKATNQDVFVDSQARERRPYEGDLLVNANTSYSVSSNYSLARHSLDYLIDNPTWPEDYKLFAIEMAWLDYLYTGDDDLLQTRYTDLQYKLNRGKSAESFDGASQSFTGSLKNSQGVDNFDAAVGLVTNDGLVDWPISERDGFMEGTYNTPFNAIFHGACATMAKIARVLHHPDDADRYQKRAEIIKTNLIDKLYDPQTGRFFDSLNADLSVNRHASHHASAYALCYGVYTDQDMADRLSHFVANDGHFVGSIYFIYFMLKGLFEAGHAADAITLLTDPDNHKDHKSFAAILDSLKATIAPEAWSNAYKPNLTLSHPWGATPGLTIVQGVFGIVPLAPGFTTFRVKVRPGNLKHLDLTTPSVKGLITLHYRHEPTHQTLDVTVPMNTTAQVELPDDAHAIVVHDQYGKDWTTSIEHDHDTLSIPMGRYQIQYQA
>NC_017482.1|WP_014570110.1|2497969_2499484_-|MFS-transporter
MKRKVRWRNVIGYGAADLFGNGALTVASTWMLFFYTSFGGLSPVLGGTILAIARVADSFISPLMGYLTDHFGATKLGRKFGRRRFFLLISIPLMFIYVIIWISHMGFWFYLFTYLLMEAFTALVMIPYETLAAEMTDDYDMKSRLSSSRMLWSALATFLASWLPGRVFAIMGKNNPNAFLTIGIILAIIFILAIGLTYFSTFERETDGTPEERKAIIEESSHKGENPLVSLWNMIKDMGSVFRIKSFALHLVIYLSSFTARDIVGATYVFYIVYAMQSNPTEASNILTFGSIIGIPCNLVWPKIMSKLGPSKLLRIMYAMMFFTVACYAGLYYGQAAATSWGIMTLYALQVTWGISNSGTGYVPWTVYTFIPDVDEMVTKQRREGIFAGIMTFARKTTSALAPFLTGIVLSAFGFNEGAKTQSAAAINGLIIWMLVGTTLMLLLAFVTSYFFKLDRENHKILRDEIDRLKAGGKMADVDPAVKAKVEDLTGFGYDQLWGHNNIV
>NC_017482.1|WP_014570109.1|2497055_2497466_-|CrcB-family-protein
MQQREQVRFSWVLAVFVGGFIGGVMRYGLSSVTMDGQTIVGTTIVNLLGSFLLAFTTYGLDMRFDLPEWLLLGIGTGVIGGFTTFSTLMLDFVNLVATHAVYAFLLLSLNLIGGLMAAAGGFFVAKRLPRKDKSSW
>NC_017482.1|WP_014570108.1|2496711_2497062_-|CrcB-family-protein
MVILVGIGAGVGAVCRYLLTVLGRMLWPGKPVATMMINVLGAFLAGFLAGLPAFSAFRVLLLTGFCGGFTTFSTFMADAFILIRNRQWRVFVGYYLGIVLLGVLAMVAGLRVSLLI
>NC_017482.1|WP_005687784.1|2509847_2511683_-|ABC-transporter-ATP-binding-protein
MKQLKAQLQEALATGRLIARFGKSLFVLAIFMSTLNAIAPLLIILGNTQIINAILAGHLETVPTLIGYFYGTAGGAYLMAVCIQRYLEVKTLQANEQLKLAMYETWEQVDFQTLETQRYFAKMMKSEASFRYSGGIPVFFSQLQNLIQGVVTVIVGLGLISWLVVAGTTRSQVITAVVLVTVLTLFLGEALLIHIYQSLTRASFKLFKDLMGLERKMNYFLMNVVNAYEGLKSIKIWGLGTPIQQRYRATWTEEKTANHKLVVNDSGSQMITALMAAFATMALFLLIVFKIYRGLLPVGQLNTLFGSVVQMTSAASLIVATWQRFLRFENQMDYVNEILTTKNQTTTPTSKTPPVQRQNTIVFDHVSFAYPDGEEVLHDISFTLDLTGVTALIGVNGSGKTTLVKLLLGLYQPTAGKILFNGHDIAKISAAAYLGLFKVVFQDYAIFDFAIAENITASTQPDKDRLAQVMAANGIDSWVAHLPKQAATEIGSYQQGNFQPSGGQRQQLAVARAQYKRGIYQILDEPSAAMDPLKELALFTKIKRLSKETPSLFITHRIGAVTLANQIILLKAGRIEDIGTREELLQRSAYFRELWQSQAELYGDEHVLPDR
>NC_017482.1|WP_014570117.1|2511669_2513460_-|ABC-transporter-ATP-binding-protein
MEQASNWRYILAKFIGKYRFKFGALLGGLCLVEIVYVVGISLLPPLAVILLETKQLSVGLTILVIFIAGVFVYGIRILDLFLQQCLSILTFDFRFDYVPVFSEHIFGWDQRLIDSVAGKTVIDQAYEAIYNGANVGIGAIVDQTIILVRTGCQIAVLLVMMGTLSFWPAAVVFGLNVLQYLFQRLSNQWYFKHKDSQNRITSYQNYFVRTLMKRSTGKDIRLFAMLGVFHQHFSDLIQRLVAWQRHYANITLMVNLGQRIVNVGGLALSLLILLATRNISVASLLFFITAIQTLNSNFGQLRDAYAAVGKNLVFVDNFRKFMAFPYRHHQHKNAEHFSGTGIINVTHVDYQVNKTPILHDVNLSIAPSELVAIVGENGAGKSTLIKLLCGLYLPTAGSVVMDGQAISDWTPAAIQRRLAVEFQDDVILHFTIAENIACTTPEKIDLDRVKAVLDEVGLGAFVAGLPQGVQTFIDNELADDGIQLSGGQKEKLLFARVLYRQADFNILDEPTAALDPLSEKQFYDLIDEKLVNKTTIIVAHRLGALAVRNVKIFVMKDGTVVAAGTHHWLLENSADYRALWEAQRSMYVGGGDHETA
>NC_017482.1|WP_005687781.1|2513684_2514869_-|MFS-transporter
MIKRMQNALPLLLGYGFSLLGDMVYIYGMNWFLVEQTHQTELLGLINGISGIVLIVANVFAGPIVDSFNRKHMMIFADLLSGVTCFMCAFLLRDVVAGKLLLILTSSVLNVSLAFNSPSAKAVVPNVIHESQIEPFNSVQNTLSSTIKVVGPLVGALLLKLHSNINGFILINGVSFVLSALLIATIRYTEKNSHKEKLQILPKLKSGMAYVRKKETILGLLVLIATINFFAEAYTLSLPYLVKVSLDLNGDWYSAVISIEAIGGIVGGLLLALFNQKSGKNGYYIDVLLLALSILIPGIFRVYPALLFAAFINGFFGTRFNAKVFTALQLITENDYLGRVFSILFIFSALLIPPADFLFGRVIPILGWNVLILSAVGLALSSLLIWMRFIRKLD
>NC_017482.1|WP_107755086.1|2515241_2516135_-|IS3-family-transposase
MRGRIEEQSAAQKTAVVDALRHDYPLKELLALAQLPRATFYDRLHRKNKPDKYAALKVFIKKTFHDSYETYGYRRIHVMARKAGFKCSPNTILRLMGQLNLSVTLYSRHTSGYHSYKGKVGTVNDNLLHQQFDAQEPFAVLHTDVTQVRLLDHSWGYISAIIDEASREVITVIVRNSANKEQLHLTLDDLAKKLPAGVTPIMHSDQGWQYQTREYQSQVHAMGIVPSMSRKGNCHDNAPMESFFNLLKRERLNRQPIKDLEELKQIVDHYVTWFNHDRISLNKNGLTPIEYRNQTAA
>NC_017482.1|WP_014570119.1|2516086_2516623_-|helix-turn-helix-domain-containing-protein
MTKYSSEFKVKVVQEYLSGRVSYNSLCTKYSIPSTKPVREWVKQAQVHGLESLQRKHTKTFYSLEQKLAVVDYYQTSGEGVASVAAHFGINASQVTVWAKIFKTEGVAGLRPKPRGRRSTVKHKKPKQVKKLELSEKEAYQQEILKLRGELYHTRMERDFLKKLGAVSKNNLPPKKQQ
>NC_017482.1|WP_003567483.1|2516744_2517137_-|30S-ribosomal-protein-S9
MAQVQYAGTGRRKNSVARVRLVPGTGKITMNGKDVRDYLPYENLITDLSQPFGITETTGSYDVLVNVNGGGFSGQAGATRHGIARALLTVDPDFRGPLKKAGMLTRDPRMKERKKYGLKKARKASQFSKR
>NC_017482.1|WP_005686771.1|2517150_2517597_-|50S-ribosomal-protein-L13
MRTTFLAKPGEIERKWYVIDATDIALGRLSSVVASILRGKNKPQFTPNVDTGDNVIVINASKLKLTGKKASDKIYYRHSQHPGGLKHEIAGDLLRDNPARLVEYSVKKMLPTKNTLGHQQFLKLHVYAGEEHPHLAQKPEVLDISNLI
>NC_017482.1|WP_005711219.1|2517863_2518481_-|TetR/AcrR-family-transcriptional-regulator
MTQRNDQKKATVQRILTAAQVLFMNHGYTAVTTRMIAEAADVRQPLLYHYFKTKEALYLAVVMAVSEDMASKIAHEQIDAQNFGKKVKRLGHLLTDDNMMNLQLVLHDVGNLSSKAQADVFQAWQVGLLSPLDRFFSTFDEQLAPTYRVRDVTLYFLTVLAAYLQPTVGTSRGNTFQNQLSLDRALQMFCTGVLRPEANGEGHKD
>NC_017482.1|WP_005714589.1|2518561_2519620_+|ABC-transporter-permease
MFLAYKEIIHNKARYLLVMATFVLIAYLVFFLTGLATGLARNNRTAIDALPGNYVLLSKYANKNLLSSTLSADQITKVSTKHTAVLGQVAVVAESTANDKKVNSNVFGINLNGKLKPTVTSGRLPIHHNEVLADDSVTIYGLHQGDRITLNGSSQTYRIVGLTHDRRFYTVPVFYTTLGTFRQLKFGQRQVKQASAVISTKPFKNIPAKTQSISKATLVENIPGYTAETSTFALMIGAMIGIMLLIIGIFMYILTIQKIAMYGVMRAQGIRTRAIIAALFWQILMLAVTGVAIGAGLLGLTQFILPKAMPFYANPPLFIAIAAALILMSLVGGLFSLRRILHIDPLAAIGGE
>NC_017482.1|WP_014570120.1|2519621_2520332_+|ABC-transporter-ATP-binding-protein
MTTLVQLKQVSKVYGSGHTAVVALHPTDFTLHAGEFAAVIGPSGSGKTTLLTIIGNLQQPSDGQIVINGQDTTHFNEHQRTDLRFNTFGFILQASNLIPFLTVKDQLALVDRFNHHRQHKRSMTELFDLLGISDLTANYPSALSGGEKQRVAIARALYNDPKIILADEPTASLDTKRALQVVALLADIAHKTKRGVIMITHDTRLLDDVDTLYEMRDGQLKQLRDRAAKKVTPNPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017482_3	3.1\|2509365\|52\|NC_017482\|CRISPRCasFinder	2509365-2509416	52	NC_017482.1	1340394-1340445	0	1.0
NC_017482_3	3.1\|2509365\|52\|NC_017482\|CRISPRCasFinder	2509365-2509416	52	NC_017482.1	2281556-2281607	0	1.0
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	NC_017482.1	1114186-1114215	2	0.933
NC_017482_3	3.1\|2509365\|52\|NC_017482\|CRISPRCasFinder	2509365-2509416	52	NC_017482.1	1511479-1511530	2	0.962
NC_017482_3	3.1\|2509365\|52\|NC_017482\|CRISPRCasFinder	2509365-2509416	52	NC_017482.1	2212555-2212606	2	0.962

1. spacer 3.1|2509365|52|NC_017482|CRISPRCasFinder matches to position: 1340394-1340445, mismatch: 0, identity: 1.0

tccccggcgcagaagtctgcgtgtaaggaccttagccgcaatggccaaagac	CRISPR spacer
tccccggcgcagaagtctgcgtgtaaggaccttagccgcaatggccaaagac	Protospacer
****************************************************

2. spacer 3.1|2509365|52|NC_017482|CRISPRCasFinder matches to position: 2281556-2281607, mismatch: 0, identity: 1.0

tccccggcgcagaagtctgcgtgtaaggaccttagccgcaatggccaaagac	CRISPR spacer
tccccggcgcagaagtctgcgtgtaaggaccttagccgcaatggccaaagac	Protospacer
****************************************************

3. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to position: 1114186-1114215, mismatch: 2, identity: 0.933

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtattgcaagccgtagtgctcgatct	Protospacer
****** ************.**********

4. spacer 3.1|2509365|52|NC_017482|CRISPRCasFinder matches to position: 1511479-1511530, mismatch: 2, identity: 0.962

tccccggcgcagaagtctgcgtgtaaggaccttagccgcaatggccaaagac	CRISPR spacer
tccccggcgcagaagtctgcgtgtaaggaccacagccgcaatggccaaagac	Protospacer
******************************* .*******************

5. spacer 3.1|2509365|52|NC_017482|CRISPRCasFinder matches to position: 2212555-2212606, mismatch: 2, identity: 0.962

tccccggcgcagaagtctgcgtgtaaggaccttagccgcaatggccaaagac	CRISPR spacer
tccccggcgcagaagtctgcgtgtaaggacctcaggcgcaatggccaaagac	Protospacer
********************************.** ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017482_1	1.1\|897687\|30\|NC_017482\|CRISPRCasFinder	897687-897716	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	41533-41562	0	1.0
NC_017482_1	1.1\|897687\|30\|NC_017482\|CRISPRCasFinder	897687-897716	30	NC_004112	Lactobacillus phage A2, complete genome	41533-41562	0	1.0
NC_017482_2	2.7\|2260693\|30\|NC_017482\|CRT,CRISPRCasFinder	2260693-2260722	30	KC171647	Lactobacillus phage PL-1, complete genome	25171-25200	0	1.0
NC_017482_2	2.7\|2260693\|30\|NC_017482\|CRT,CRISPRCasFinder	2260693-2260722	30	NC_022756	Lactobacillus phage J-1, complete genome	27222-27251	0	1.0
NC_017482_2	2.7\|2260693\|30\|NC_017482\|CRT,CRISPRCasFinder	2260693-2260722	30	MF999224	Lactobacillus phage LJ, complete genome	922-951	0	1.0
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	NZ_LS991422	Lactobacillus casei isolate CECT 9104 plasmid 2	13078-13107	0	1.0
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	KC171647	Lactobacillus phage PL-1, complete genome	7515-7544	0	1.0
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	NC_022756	Lactobacillus phage J-1, complete genome	7515-7544	0	1.0
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	EU246945	Lactobacillus phage Lrm1, complete sequence	267-296	0	1.0
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	NC_011104	Lactobacillus phage Lrm1, complete genome	267-296	0	1.0
NC_017482_2	2.24\|2261815\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261815-2261844	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	6024-6053	0	1.0
NC_017482_2	2.24\|2261815\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261815-2261844	30	MH983004	Lactobacillus phage BH1, complete genome	6012-6041	0	1.0
NC_017482_2	2.24\|2261815\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261815-2261844	30	NC_004112	Lactobacillus phage A2, complete genome	6024-6053	0	1.0
NC_017482_2	2.6\|2260627\|30\|NC_017482\|CRT,CRISPRCasFinder	2260627-2260656	30	NC_028835	Lactobacillus phage CL2, complete genome	33156-33185	1	0.967
NC_017482_2	2.6\|2260627\|30\|NC_017482\|CRT,CRISPRCasFinder	2260627-2260656	30	KR905066	Lactobacillus phage CL1, complete genome	33471-33500	1	0.967
NC_017482_2	2.6\|2260627\|30\|NC_017482\|CRT,CRISPRCasFinder	2260627-2260656	30	KC171647	Lactobacillus phage PL-1, complete genome	30523-30552	1	0.967
NC_017482_2	2.6\|2260627\|30\|NC_017482\|CRT,CRISPRCasFinder	2260627-2260656	30	NC_022756	Lactobacillus phage J-1, complete genome	32574-32603	1	0.967
NC_017482_2	2.6\|2260627\|30\|NC_017482\|CRT,CRISPRCasFinder	2260627-2260656	30	NC_028911	Lactobacillus phage iLp1308, complete genome	30395-30424	1	0.967
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	MN830259	Lactobacillus phage JNU_P10, complete genome	30191-30220	1	0.967
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	34319-34348	1	0.967
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	NC_005893	Lactobacillus phage phiAT3, complete genome	34213-34242	1	0.967
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	AY605066	Bacteriophage phi AT3, complete sequence	34213-34242	1	0.967
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	MN830258	Lactobacillus phage JNU_P9, complete genome	39101-39130	1	0.967
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	NC_004112	Lactobacillus phage A2, complete genome	34319-34348	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	NC_007501	Lactobacillus phage Lc-Nu, complete genome	34311-34340	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	MN830259	Lactobacillus phage JNU_P10, complete genome	33712-33741	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	NC_005893	Lactobacillus phage phiAT3, complete genome	37765-37794	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	AY131267	Bacteriophage Lc-Nu, complete genome	34311-34340	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	AY605066	Bacteriophage phi AT3, complete sequence	37765-37794	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	KC171647	Lactobacillus phage PL-1, complete genome	35654-35683	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	NC_022756	Lactobacillus phage J-1, complete genome	37705-37734	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	MF999224	Lactobacillus phage LJ, complete genome	13169-13198	1	0.967
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	MH983004	Lactobacillus phage BH1, complete genome	38199-38228	1	0.967
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	NZ_LS991422	Lactobacillus casei isolate CECT 9104 plasmid 2	24384-24413	1	0.967
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	EU246945	Lactobacillus phage Lrm1, complete sequence	7314-7343	1	0.967
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	7526-7555	1	0.967
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	NC_011104	Lactobacillus phage Lrm1, complete genome	7314-7343	1	0.967
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	MH983004	Lactobacillus phage BH1, complete genome	7515-7544	1	0.967
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	NC_004112	Lactobacillus phage A2, complete genome	7526-7555	1	0.967
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	267-296	1	0.967
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	KC171647	Lactobacillus phage PL-1, complete genome	255-284	1	0.967
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	NC_022756	Lactobacillus phage J-1, complete genome	255-284	1	0.967
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	MF999224	Lactobacillus phage LJ, complete genome	16655-16684	1	0.967
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	MH983004	Lactobacillus phage BH1, complete genome	255-284	1	0.967
NC_017482_2	2.22\|2261683\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261683-2261712	30	NC_004112	Lactobacillus phage A2, complete genome	267-296	1	0.967
NC_017482_2	2.24\|2261815\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261815-2261844	30	NZ_LS991422	Lactobacillus casei isolate CECT 9104 plasmid 2	25882-25911	1	0.967
NC_017482_2	2.6\|2260627\|30\|NC_017482\|CRT,CRISPRCasFinder	2260627-2260656	30	NZ_LS991422	Lactobacillus casei isolate CECT 9104 plasmid 2	1967-1996	2	0.933
NC_017482_2	2.6\|2260627\|30\|NC_017482\|CRT,CRISPRCasFinder	2260627-2260656	30	MF999224	Lactobacillus phage LJ, complete genome	6216-6245	2	0.933
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	AP018361	Lactobacillus phage T25 DNA, complete genome	7970-7999	2	0.933
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	NC_028835	Lactobacillus phage CL2, complete genome	37861-37890	2	0.933
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	KR905066	Lactobacillus phage CL1, complete genome	38046-38075	2	0.933
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	MF999224	Lactobacillus phage LJ, complete genome	24255-24284	2	0.933
NC_017482_1	1.1\|897687\|30\|NC_017482\|CRISPRCasFinder	897687-897716	30	NC_005893	Lactobacillus phage phiAT3, complete genome	38862-38891	3	0.9
NC_017482_1	1.1\|897687\|30\|NC_017482\|CRISPRCasFinder	897687-897716	30	AY605066	Bacteriophage phi AT3, complete sequence	38862-38891	3	0.9
NC_017482_2	2.4\|2260495\|30\|NC_017482\|CRT,CRISPRCasFinder	2260495-2260524	30	NC_007501	Lactobacillus phage Lc-Nu, complete genome	21570-21599	3	0.9
NC_017482_2	2.4\|2260495\|30\|NC_017482\|CRT,CRISPRCasFinder	2260495-2260524	30	AY131267	Bacteriophage Lc-Nu, complete genome	21570-21599	3	0.9
NC_017482_2	2.9\|2260825\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260825-2260854	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	41406-41435	3	0.9
NC_017482_2	2.9\|2260825\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260825-2260854	30	NC_004112	Lactobacillus phage A2, complete genome	41406-41435	3	0.9
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NC_017536	Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence	67602-67631	4	0.867
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NC_015689	Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence	67604-67633	4	0.867
NC_017482_2	2.9\|2260825\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260825-2260854	30	EU246945	Lactobacillus phage Lrm1, complete sequence	38452-38481	5	0.833
NC_017482_2	2.9\|2260825\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260825-2260854	30	NC_011104	Lactobacillus phage Lrm1, complete genome	38452-38481	5	0.833
NC_017482_2	2.1\|2260297\|30\|NC_017482\|CRT	2260297-2260326	30	NZ_CP043636	Empedobacter brevis strain SE1-3 plasmid pSE1-3-20kb, complete sequence	19188-19217	6	0.8
NC_017482_2	2.1\|2260297\|30\|NC_017482\|CRT	2260297-2260326	30	NZ_CP043637	Empedobacter brevis strain SE1-3 plasmid pSE1-3-14kb, complete sequence	6538-6567	6	0.8
NC_017482_2	2.9\|2260825\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260825-2260854	30	AP018361	Lactobacillus phage T25 DNA, complete genome	6987-7016	6	0.8
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	NZ_CP040877	Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence	108064-108093	6	0.8
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	NZ_CP040877	Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence	141927-141956	6	0.8
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	NZ_CP035221	Enterococcus faecium strain SRCM103470 plasmid unnamed1	162511-162540	6	0.8
NC_017482_2	2.16\|2261287\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261287-2261316	30	NZ_CP051433	Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence	21078-21107	6	0.8
NC_017482_2	2.16\|2261287\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261287-2261316	30	MK649828	Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence	82318-82347	6	0.8
NC_017482_2	2.16\|2261287\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261287-2261316	30	NZ_CP041094	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence	74050-74079	6	0.8
NC_017482_2	2.16\|2261287\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261287-2261316	30	NZ_CP024459	Klebsiella pneumoniae strain QS17-0161 plasmid pMR0617aac, complete sequence	46803-46832	6	0.8
NC_017482_2	2.16\|2261287\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261287-2261316	30	MK649827	Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence	168779-168808	6	0.8
NC_017482_2	2.16\|2261287\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261287-2261316	30	MK649829	Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence	73116-73145	6	0.8
NC_017482_2	2.17\|2261353\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261353-2261382	30	NZ_CP029453	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence	323524-323553	6	0.8
NC_017482_2	2.17\|2261353\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261353-2261382	30	NZ_CP023069	Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence	332310-332339	6	0.8
NC_017482_2	2.17\|2261353\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261353-2261382	30	NZ_CP029233	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence	340027-340056	6	0.8
NC_017482_2	2.5\|2260561\|30\|NC_017482\|CRT,CRISPRCasFinder	2260561-2260590	30	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	179727-179756	7	0.767
NC_017482_2	2.5\|2260561\|30\|NC_017482\|CRT,CRISPRCasFinder	2260561-2260590	30	NZ_CP004365	Komagataeibacter xylinus E25 plasmid pGX5, complete sequence	257299-257328	7	0.767
NC_017482_2	2.5\|2260561\|30\|NC_017482\|CRT,CRISPRCasFinder	2260561-2260590	30	NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	107470-107499	7	0.767
NC_017482_2	2.5\|2260561\|30\|NC_017482\|CRT,CRISPRCasFinder	2260561-2260590	30	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	147813-147842	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	MT939487	Erwinia phage pEa_SNUABM_47, complete genome	171070-171099	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	MN694273	Marine virus AFVG_250M205, complete genome	26416-26445	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	171942-171971	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	MT939486	Erwinia phage pEa_SNUABM_12, complete genome	171810-171839	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	171554-171583	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	NC_041917	Serratia phage BF, complete genome	171782-171811	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	171554-171583	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	MT939488	Erwinia phage pEa_SNUABM_50, complete genome	170947-170976	7	0.767
NC_017482_2	2.11\|2260957\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260957-2260986	30	MT119361	Enterococus phage vipetofem, complete genome	29325-29354	7	0.767
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NZ_CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	195642-195671	7	0.767
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NC_006466	Cupriavidus metallidurans CH34 plasmid pMOL30, complete sequence	40454-40483	7	0.767
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NC_027348	Delftia phage RG-2014, complete genome	34837-34866	7	0.767
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NZ_CP037902	Cupriavidus metallidurans strain BS1 plasmid p1, complete sequence	132507-132536	7	0.767
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NZ_CP046332	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed2	148537-148566	7	0.767
NC_017482_2	2.18\|2261419\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261419-2261448	30	KT001912	Bacillus phage Silence, complete genome	18237-18266	7	0.767
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	MF417871	Uncultured Caudovirales phage clone 8F_11, partial genome	26940-26969	7	0.767
NC_017482_2	2.2\|2260363\|30\|NC_017482\|CRT,CRISPRCasFinder	2260363-2260392	30	NC_015701	Lactobacillus reuteri SD2112 plasmid pLR584, complete sequence	8539-8568	8	0.733
NC_017482_2	2.10\|2260891\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260891-2260920	30	MH622939	Siphoviridae sp. isolate ctbf_3, complete genome	24007-24036	8	0.733
NC_017482_2	2.14\|2261155\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261155-2261184	30	NC_042091	Pseudomonas phage nickie, complete genome	86547-86576	8	0.733
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	NC_048672	Lentibacter virus vB_LenP_ICBM1, complete genome	29642-29671	8	0.733
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	MF431615	Lentibacter virus vB_LenP_VB3, complete genome	10839-10868	8	0.733
NC_017482_2	2.21\|2261617\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261617-2261646	30	MF431617	Lentibacter virus vB_LenP_VB1, complete genome	29642-29671	8	0.733
NC_017482_2	2.24\|2261815\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261815-2261844	30	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	621244-621273	8	0.733
NC_017482_2	2.5\|2260561\|30\|NC_017482\|CRT,CRISPRCasFinder	2260561-2260590	30	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	71563-71592	9	0.7
NC_017482_2	2.5\|2260561\|30\|NC_017482\|CRT,CRISPRCasFinder	2260561-2260590	30	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	71549-71578	9	0.7
NC_017482_2	2.5\|2260561\|30\|NC_017482\|CRT,CRISPRCasFinder	2260561-2260590	30	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	71555-71584	9	0.7
NC_017482_2	2.7\|2260693\|30\|NC_017482\|CRT,CRISPRCasFinder	2260693-2260722	30	NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	59956-59985	9	0.7
NC_017482_2	2.9\|2260825\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2260825-2260854	30	KX241618	Xanthomonas phage Xoo-sp2, complete genome	24254-24283	9	0.7
NC_017482_2	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	NC_016571	Pseudomonas phage OBP, complete genome	40739-40768	9	0.7
NC_017482_2	2.24\|2261815\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261815-2261844	30	NZ_CP020349	Pasteurella multocida subsp. septica strain CIRMBP-0873 plasmid unnamed2, complete sequence	8543-8572	9	0.7

1. spacer 1.1|897687|30|NC_017482|CRISPRCasFinder matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 0, identity: 1.0

ttagctatggctacgttagccgcacggagc	CRISPR spacer
ttagctatggctacgttagccgcacggagc	Protospacer
******************************

2. spacer 1.1|897687|30|NC_017482|CRISPRCasFinder matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 0, identity: 1.0

ttagctatggctacgttagccgcacggagc	CRISPR spacer
ttagctatggctacgttagccgcacggagc	Protospacer
******************************

3. spacer 2.7|2260693|30|NC_017482|CRT,CRISPRCasFinder matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 0, identity: 1.0

gcatatagcttgatattggccgcaagctcg	CRISPR spacer
gcatatagcttgatattggccgcaagctcg	Protospacer
******************************

4. spacer 2.7|2260693|30|NC_017482|CRT,CRISPRCasFinder matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 0, identity: 1.0

gcatatagcttgatattggccgcaagctcg	CRISPR spacer
gcatatagcttgatattggccgcaagctcg	Protospacer
******************************

5. spacer 2.7|2260693|30|NC_017482|CRT,CRISPRCasFinder matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 0, identity: 1.0

gcatatagcttgatattggccgcaagctcg	CRISPR spacer
gcatatagcttgatattggccgcaagctcg	Protospacer
******************************

6. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LS991422 (Lactobacillus casei isolate CECT 9104 plasmid 2) position: , mismatch: 0, identity: 1.0

tttaaatgcgtattttcttttctcaactgt	CRISPR spacer
tttaaatgcgtattttcttttctcaactgt	Protospacer
******************************

7. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 0, identity: 1.0

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggcatcacagaagcaaccgaaacaatc	Protospacer
******************************

8. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 0, identity: 1.0

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggcatcacagaagcaaccgaaacaatc	Protospacer
******************************

9. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 0, identity: 1.0

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagattcgatgat	Protospacer
******************************

10. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 0, identity: 1.0

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagattcgatgat	Protospacer
******************************

11. spacer 2.24|2261815|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 0, identity: 1.0

aagcaatccagaaactcgggatcgtttctt	CRISPR spacer
aagcaatccagaaactcgggatcgtttctt	Protospacer
******************************

12. spacer 2.24|2261815|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 0, identity: 1.0

aagcaatccagaaactcgggatcgtttctt	CRISPR spacer
aagcaatccagaaactcgggatcgtttctt	Protospacer
******************************

13. spacer 2.24|2261815|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 0, identity: 1.0

aagcaatccagaaactcgggatcgtttctt	CRISPR spacer
aagcaatccagaaactcgggatcgtttctt	Protospacer
******************************

14. spacer 2.6|2260627|30|NC_017482|CRT,CRISPRCasFinder matches to NC_028835 (Lactobacillus phage CL2, complete genome) position: , mismatch: 1, identity: 0.967

ttagtggcagagaggtaatgatgatcacac	CRISPR spacer
ttagtggcaaagaggtaatgatgatcacac	Protospacer
*********.********************

15. spacer 2.6|2260627|30|NC_017482|CRT,CRISPRCasFinder matches to KR905066 (Lactobacillus phage CL1, complete genome) position: , mismatch: 1, identity: 0.967

ttagtggcagagaggtaatgatgatcacac	CRISPR spacer
ttagtggcaaagaggtaatgatgatcacac	Protospacer
*********.********************

16. spacer 2.6|2260627|30|NC_017482|CRT,CRISPRCasFinder matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 1, identity: 0.967

ttagtggcagagaggtaatgatgatcacac	CRISPR spacer
ttagtggcaaagaggtaatgatgatcacac	Protospacer
*********.********************

17. spacer 2.6|2260627|30|NC_017482|CRT,CRISPRCasFinder matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 1, identity: 0.967

ttagtggcagagaggtaatgatgatcacac	CRISPR spacer
ttagtggcaaagaggtaatgatgatcacac	Protospacer
*********.********************

18. spacer 2.6|2260627|30|NC_017482|CRT,CRISPRCasFinder matches to NC_028911 (Lactobacillus phage iLp1308, complete genome) position: , mismatch: 1, identity: 0.967

ttagtggcagagaggtaatgatgatcacac	CRISPR spacer
ttagtggcaaagaggtaatgatgatcacac	Protospacer
*********.********************

19. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MN830259 (Lactobacillus phage JNU_P10, complete genome) position: , mismatch: 1, identity: 0.967

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtcttgcaggccgtaatgctcgatct	Protospacer
************.*****************

20. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 1, identity: 0.967

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtcttgcaagccgtaatgctcgattt	Protospacer
****************************.*

21. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 1, identity: 0.967

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtcttgcaatccgtaatgctcgatct	Protospacer
************* ****************

22. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 1, identity: 0.967

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtcttgcaatccgtaatgctcgatct	Protospacer
************* ****************

23. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 1, identity: 0.967

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtcttgcaagccgtaatgttcgatct	Protospacer
**********************.*******

24. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 1, identity: 0.967

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtcttgcaagccgtaatgctcgattt	Protospacer
****************************.*

25. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_007501 (Lactobacillus phage Lc-Nu, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

26. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MN830259 (Lactobacillus phage JNU_P10, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

27. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

28. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AY131267 (Bacteriophage Lc-Nu, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

29. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

30. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

31. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

32. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

33. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 1, identity: 0.967

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcaacacaaacggt	Protospacer
********* ********************

34. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LS991422 (Lactobacillus casei isolate CECT 9104 plasmid 2) position: , mismatch: 1, identity: 0.967

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggtatcacagaagcaaccgaaacaatc	Protospacer
*****.************************

35. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 1, identity: 0.967

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggtatcacagaagcaaccgaaacaatc	Protospacer
*****.************************

36. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 1, identity: 0.967

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggtatcacagaagcaaccgaaacaatc	Protospacer
*****.************************

37. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 1, identity: 0.967

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggtatcacagaagcaaccgaaacaatc	Protospacer
*****.************************

38. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 1, identity: 0.967

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggtatcacagaagcaaccgaaacaatc	Protospacer
*****.************************

39. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 1, identity: 0.967

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggtatcacagaagcaaccgaaacaatc	Protospacer
*****.************************

40. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 1, identity: 0.967

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagattcgataat	Protospacer
***************************.**

41. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 1, identity: 0.967

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagactcgatgat	Protospacer
*********************.********

42. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 1, identity: 0.967

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagactcgatgat	Protospacer
*********************.********

43. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 1, identity: 0.967

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagactcgatgat	Protospacer
*********************.********

44. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 1, identity: 0.967

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagattcgataat	Protospacer
***************************.**

45. spacer 2.22|2261683|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 1, identity: 0.967

aagtggtaaggtccccaaagattcgatgat	CRISPR spacer
aagtggtaaggtccccaaagattcgataat	Protospacer
***************************.**

46. spacer 2.24|2261815|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LS991422 (Lactobacillus casei isolate CECT 9104 plasmid 2) position: , mismatch: 1, identity: 0.967

aagcaatccagaaactcgggatcgtttctt	CRISPR spacer
aagcaatccagaaactcgggatcgtttttt	Protospacer
***************************.**

47. spacer 2.6|2260627|30|NC_017482|CRT,CRISPRCasFinder matches to NZ_LS991422 (Lactobacillus casei isolate CECT 9104 plasmid 2) position: , mismatch: 2, identity: 0.933

ttagtggcagagaggtaatgatgatcacac	CRISPR spacer
ttagtggcaaagaggtaatgaggatcacac	Protospacer
*********.*********** ********

48. spacer 2.6|2260627|30|NC_017482|CRT,CRISPRCasFinder matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 2, identity: 0.933

ttagtggcagagaggtaatgatgatcacac	CRISPR spacer
ttagtggcaaagaggtaatgaggatcacac	Protospacer
*********.*********** ********

49. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AP018361 (Lactobacillus phage T25 DNA, complete genome) position: , mismatch: 2, identity: 0.933

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcgacacaaacggt	Protospacer
********* ********.***********

50. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_028835 (Lactobacillus phage CL2, complete genome) position: , mismatch: 2, identity: 0.933

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcgacacaaacggt	Protospacer
********* ********.***********

51. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to KR905066 (Lactobacillus phage CL1, complete genome) position: , mismatch: 2, identity: 0.933

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tagtgatcagattcatgcgacacaaacggt	Protospacer
********* ********.***********

52. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 2, identity: 0.933

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
ggtggcatcacggaagcaaccgaaacaatt	Protospacer
***********.*****************.

53. spacer 1.1|897687|30|NC_017482|CRISPRCasFinder matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 3, identity: 0.9

ttagctatggctacgttagccgcacggagc	CRISPR spacer
taagttatggatacgttagccgcacggagc	Protospacer
* **.***** *******************

54. spacer 1.1|897687|30|NC_017482|CRISPRCasFinder matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 3, identity: 0.9

ttagctatggctacgttagccgcacggagc	CRISPR spacer
taagttatggatacgttagccgcacggagc	Protospacer
* **.***** *******************

55. spacer 2.4|2260495|30|NC_017482|CRT,CRISPRCasFinder matches to NC_007501 (Lactobacillus phage Lc-Nu, complete genome) position: , mismatch: 3, identity: 0.9

tgaaataattgttgacacgtgagaacacag	CRISPR spacer
tgaaataattgttgacacatgggaacactg	Protospacer
******************.**.****** *

56. spacer 2.4|2260495|30|NC_017482|CRT,CRISPRCasFinder matches to AY131267 (Bacteriophage Lc-Nu, complete genome) position: , mismatch: 3, identity: 0.9

tgaaataattgttgacacgtgagaacacag	CRISPR spacer
tgaaataattgttgacacatgggaacactg	Protospacer
******************.**.****** *

57. spacer 2.9|2260825|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 3, identity: 0.9

gtctagcccgagaagttccgcggctttttt	CRISPR spacer
gtctagtccaagaagttccgcggcttttct	Protospacer
******.**.******************.*

58. spacer 2.9|2260825|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 3, identity: 0.9

gtctagcccgagaagttccgcggctttttt	CRISPR spacer
gtctagtccaagaagttccgcggcttttct	Protospacer
******.**.******************.*

59. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_017536 (Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence) position: , mismatch: 4, identity: 0.867

-acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
cgcagcc-ttttgatcttgtcggcatcaccc	Protospacer
 .***** *.***********.*********

60. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_015689 (Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence) position: , mismatch: 4, identity: 0.867

-acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
cgcagcc-ttttgatcttgtcggcatcaccc	Protospacer
 .***** *.***********.*********

61. spacer 2.9|2260825|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 5, identity: 0.833

gtctagcccgagaagttccgcggctttttt	CRISPR spacer
gcttagcccgaggagttccgctgcttttgt	Protospacer
*..*********.******** ****** *

62. spacer 2.9|2260825|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 5, identity: 0.833

gtctagcccgagaagttccgcggctttttt	CRISPR spacer
gcttagcccgaggagttccgctgcttttgt	Protospacer
*..*********.******** ****** *

63. spacer 2.1|2260297|30|NC_017482|CRT matches to NZ_CP043636 (Empedobacter brevis strain SE1-3 plasmid pSE1-3-20kb, complete sequence) position: , mismatch: 6, identity: 0.8

tattcaaactgcatagcaacttttccaagt--	CRISPR spacer
ctttcaaactccatagcaactttt--aattca	Protospacer
. ******** *************  ** *

64. spacer 2.1|2260297|30|NC_017482|CRT matches to NZ_CP043637 (Empedobacter brevis strain SE1-3 plasmid pSE1-3-14kb, complete sequence) position: , mismatch: 6, identity: 0.8

tattcaaactgcatagcaacttttccaagt--	CRISPR spacer
ctttcaaactccatagcaactttt--aattca	Protospacer
. ******** *************  ** *

65. spacer 2.9|2260825|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to AP018361 (Lactobacillus phage T25 DNA, complete genome) position: , mismatch: 6, identity: 0.8

gtctagcccgagaagttccgcggctttttt	CRISPR spacer
gcttagtccgaggagttccgcggctttctc	Protospacer
*..***.*****.**************.*.

66. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP040877 (Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tttaaatgcgtattttcttttctcaactgt	CRISPR spacer
tttaaatgagcattttcttttctcagttca	Protospacer
******** *.**************..*

67. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP040877 (Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tttaaatgcgtattttcttttctcaactgt	CRISPR spacer
tttaaatgagcattttcttttctcagttca	Protospacer
******** *.**************..*

68. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP035221 (Enterococcus faecium strain SRCM103470 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

tttaaatgcgtattttcttttctcaactgt	CRISPR spacer
tttaaatgagcattttcttttctcagttca	Protospacer
******** *.**************..*

69. spacer 2.16|2261287|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP051433 (Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence) position: , mismatch: 6, identity: 0.8

tagaata-ctaccttttggcacaatattatt	CRISPR spacer
-aaaacatctaccttttggcacaattttagc	Protospacer
 *.**.* ***************** *** .

70. spacer 2.16|2261287|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MK649828 (Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence) position: , mismatch: 6, identity: 0.8

tagaata-ctaccttttggcacaatattatt	CRISPR spacer
-aaaacatctaccttttggcacaattttagc	Protospacer
 *.**.* ***************** *** .

71. spacer 2.16|2261287|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP041094 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tagaata-ctaccttttggcacaatattatt	CRISPR spacer
-aaaacatctaccttttggcacaattttagc	Protospacer
 *.**.* ***************** *** .

72. spacer 2.16|2261287|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024459 (Klebsiella pneumoniae strain QS17-0161 plasmid pMR0617aac, complete sequence) position: , mismatch: 6, identity: 0.8

tagaata-ctaccttttggcacaatattatt	CRISPR spacer
-aaaacatctaccttttggcacaattttagc	Protospacer
 *.**.* ***************** *** .

73. spacer 2.16|2261287|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MK649827 (Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence) position: , mismatch: 6, identity: 0.8

tagaata-ctaccttttggcacaatattatt	CRISPR spacer
-aaaacatctaccttttggcacaattttagc	Protospacer
 *.**.* ***************** *** .

74. spacer 2.16|2261287|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MK649829 (Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence) position: , mismatch: 6, identity: 0.8

tagaata-ctaccttttggcacaatattatt	CRISPR spacer
-aaaacatctaccttttggcacaattttagc	Protospacer
 *.**.* ***************** *** .

75. spacer 2.17|2261353|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029453 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence) position: , mismatch: 6, identity: 0.8

tcaatcgtcatgccaagcggcatagcacct	CRISPR spacer
gcgatcgtcatgccaagcgtcaaagcagat	Protospacer
 *.**************** ** ****  *

76. spacer 2.17|2261353|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP023069 (Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence) position: , mismatch: 6, identity: 0.8

tcaatcgtcatgccaagcggcatagcacct	CRISPR spacer
gcgatcgtcatgccaagcgtcaaagcagat	Protospacer
 *.**************** ** ****  *

77. spacer 2.17|2261353|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP029233 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence) position: , mismatch: 6, identity: 0.8

tcaatcgtcatgccaagcggcatagcacct	CRISPR spacer
gcgatcgtcatgccaagcgtcaaagcagat	Protospacer
 *.**************** ** ****  *

78. spacer 2.5|2260561|30|NC_017482|CRT,CRISPRCasFinder matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 7, identity: 0.767

actggcatcaatcatcatgaagtatgcgat	CRISPR spacer
tctgtcatcaataatcatgaagtacctgtt	Protospacer
 *** ******* ***********. .* *

79. spacer 2.5|2260561|30|NC_017482|CRT,CRISPRCasFinder matches to NZ_CP004365 (Komagataeibacter xylinus E25 plasmid pGX5, complete sequence) position: , mismatch: 7, identity: 0.767

actggcatcaatcatcatgaagtatgcgat	CRISPR spacer
tctgtcatcaataatcatgaagtacctgtt	Protospacer
 *** ******* ***********. .* *

80. spacer 2.5|2260561|30|NC_017482|CRT,CRISPRCasFinder matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 7, identity: 0.767

actggcatcaatcatcatgaagtatgcgat	CRISPR spacer
tctgtcatcaataatcatgaagtacctgtt	Protospacer
 *** ******* ***********. .* *

81. spacer 2.5|2260561|30|NC_017482|CRT,CRISPRCasFinder matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 7, identity: 0.767

actggcatcaatcatcatgaagtatgcgat	CRISPR spacer
tctgtcatcaataatcatgaagtacctgtt	Protospacer
 *** ******* ***********. .* *

82. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt--	CRISPR spacer
tttcaatgcgtaatttcttttctt--ttggta	Protospacer
*** ******** **********.  .**

83. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MN694273 (Marine virus AFVG_250M205, complete genome) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttctttt---ctcaactgt	CRISPR spacer
tttaaatgcatattttctttttaatttaat---	Protospacer
*********.***********   .*.**.

84. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt--	CRISPR spacer
tttcaatgcgtaatttcttttctt--ttggta	Protospacer
*** ******** **********.  .**

85. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MT939486 (Erwinia phage pEa_SNUABM_12, complete genome) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt--	CRISPR spacer
tttcaatgcgtaatttcttttctt--ttggta	Protospacer
*** ******** **********.  .**

86. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt--	CRISPR spacer
tttcaatgcgtaatttcttttctt--ttggta	Protospacer
*** ******** **********.  .**

87. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_041917 (Serratia phage BF, complete genome) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt--	CRISPR spacer
tttcaatgcgtaatttcttttctt--ttggta	Protospacer
*** ******** **********.  .**

88. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt--	CRISPR spacer
tttcaatgcgtaatttcttttctt--ttggta	Protospacer
*** ******** **********.  .**

89. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MT939488 (Erwinia phage pEa_SNUABM_50, complete genome) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt--	CRISPR spacer
tttcaatgcgtaatttcttttctt--ttggta	Protospacer
*** ******** **********.  .**

90. spacer 2.11|2260957|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MT119361 (Enterococus phage vipetofem, complete genome) position: , mismatch: 7, identity: 0.767

tttaaatgcgtattttcttttctcaactgt	CRISPR spacer
tttaattgcgtatttgcttttctaaggctt	Protospacer
***** ********* ******* *. . *

91. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP033968 (Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
attgccgtcctgatctcgtcagcatcgact	Protospacer
*. ******.******.*********. *.

92. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_006466 (Cupriavidus metallidurans CH34 plasmid pMOL30, complete sequence) position: , mismatch: 7, identity: 0.767

acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
attgccgtcctgatctcgtcagcatcgact	Protospacer
*. ******.******.*********. *.

93. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_027348 (Delftia phage RG-2014, complete genome) position: , mismatch: 7, identity: 0.767

acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
cgagccgtcttgatcttgtcggccaggccc	Protospacer
  ******************.**   .***

94. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP037902 (Cupriavidus metallidurans strain BS1 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
attgccgtcctgatctcgtcagcatcgact	Protospacer
*. ******.******.*********. *.

95. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP046332 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
attgccgtcctgatctcgtcagcatcgact	Protospacer
*. ******.******.*********. *.

96. spacer 2.18|2261419|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to KT001912 (Bacillus phage Silence, complete genome) position: , mismatch: 7, identity: 0.767

tagtgatcatattcatgcaacacaaacggt	CRISPR spacer
tggtttaggtagtcatgcaacacaaacggt	Protospacer
*.**    .** ******************

97. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MF417871 (Uncultured Caudovirales phage clone 8F_11, partial genome) position: , mismatch: 7, identity: 0.767

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
attagcagcacagaagcaagcgaaacaaca	Protospacer
. *.*** *********** ********.

98. spacer 2.2|2260363|30|NC_017482|CRT,CRISPRCasFinder matches to NC_015701 (Lactobacillus reuteri SD2112 plasmid pLR584, complete sequence) position: , mismatch: 8, identity: 0.733

gaggcatgttagacgtcatatttgctgaaa	CRISPR spacer
cacgcacgttagacgtcatatttgatacgt	Protospacer
 * ***.***************** *. .

99. spacer 2.10|2260891|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MH622939 (Siphoviridae sp. isolate ctbf_3, complete genome) position: , mismatch: 8, identity: 0.733

cataaggtggcagcggccatttgtgttttt	CRISPR spacer
gataaggtggcagcggccccttgtctgcgg	Protospacer
 ***************** .**** * .

100. spacer 2.14|2261155|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_042091 (Pseudomonas phage nickie, complete genome) position: , mismatch: 8, identity: 0.733

acagccgtcttgatcttgtcagcatcaccc	CRISPR spacer
atggccgtcatgatcttgtcagcctctaag	Protospacer
*..****** ************* **

101. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_048672 (Lentibacter virus vB_LenP_ICBM1, complete genome) position: , mismatch: 8, identity: 0.733

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
tacctcaagacagaagcagccgaaacaatc	Protospacer
 ..  **  *********.***********

102. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MF431615 (Lentibacter virus vB_LenP_VB3, complete genome) position: , mismatch: 8, identity: 0.733

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
tacctcaagacagaagcagccgaaacaatc	Protospacer
 ..  **  *********.***********

103. spacer 2.21|2261617|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to MF431617 (Lentibacter virus vB_LenP_VB1, complete genome) position: , mismatch: 8, identity: 0.733

ggtggcatcacagaagcaaccgaaacaatc	CRISPR spacer
tacctcaagacagaagcagccgaaacaatc	Protospacer
 ..  **  *********.***********

104. spacer 2.24|2261815|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 8, identity: 0.733

aagcaatccagaaactcgggatcgtttctt	CRISPR spacer
gaccaatccagaagctcgggatcgaataga	Protospacer
.* **********.**********  *

105. spacer 2.5|2260561|30|NC_017482|CRT,CRISPRCasFinder matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 9, identity: 0.7

actggcatcaatcatcatgaagtatgcgat	CRISPR spacer
tacagcatcaattgtcatgaagtatgcata	Protospacer
  ..********..*************.

106. spacer 2.5|2260561|30|NC_017482|CRT,CRISPRCasFinder matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 9, identity: 0.7

actggcatcaatcatcatgaagtatgcgat	CRISPR spacer
tacagcatcaattgtcatgaagtatgcata	Protospacer
  ..********..*************.

107. spacer 2.5|2260561|30|NC_017482|CRT,CRISPRCasFinder matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 9, identity: 0.7

actggcatcaatcatcatgaagtatgcgat	CRISPR spacer
tacagcatcaattgtcatgaagtatgcata	Protospacer
  ..********..*************.

108. spacer 2.7|2260693|30|NC_017482|CRT,CRISPRCasFinder matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 9, identity: 0.7

gcatatagcttgatattggccgcaagctcg	CRISPR spacer
aggcagcgcttgagattggccgcaagctga	Protospacer
. ..*  ****** ************** .

109. spacer 2.9|2260825|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to KX241618 (Xanthomonas phage Xoo-sp2, complete genome) position: , mismatch: 9, identity: 0.7

gtctagcccgagaagttccgcggctttttt	CRISPR spacer
aaggtgcccgagcagttccgcggcttctac	Protospacer
.    ******* *************.* .

110. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_016571 (Pseudomonas phage OBP, complete genome) position: , mismatch: 9, identity: 0.7

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
aatcgtcttgcaagttgtaatgctcgacta	Protospacer
 .. **********..***********..

111. spacer 2.24|2261815|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP020349 (Pasteurella multocida subsp. septica strain CIRMBP-0873 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

aagcaatccagaaactcgggatcgtttctt	CRISPR spacer
tagcaatcaacaaactcgggatcgaaagaa	Protospacer
 ******* * *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

404999 : 525455

102

Faecalibacterium_phage(15.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014568877.1\|404999_406016_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	1.2e-35	33.4
WP_014569064.1\|407161_408019_+	transketolase	NA	NA	NA	NA
WP_014569065.1\|408011_409028_+	transketolase	NA	NA	NA	NA
WP_014569066.1\|409219_410074_+	ROK family protein	NA	NA	NA	NA
WP_005714899.1\|410123_410882_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_014569067.1\|411122_411596_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_005714903.1\|411600_411930_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA
WP_014569068.1\|411954_413061_+	PTS fructose transporter subunit IIC	NA	NA	NA	NA
WP_014568877.1\|413224_414241_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	1.2e-35	33.4
WP_014569069.1\|414321_415137_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_005714906.1\|415158_416052_+	ketose-bisphosphate aldolase	NA	NA	NA	NA
WP_005714907.1\|416596_417073_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_014569071.1\|417044_417473_-	PTS mannose transporter subunit IIB	NA	NA	NA	NA
WP_014569072.1\|417490_419179_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_005714910.1\|419218_419929_-	transaldolase	NA	NA	NA	NA
WP_014569073.1\|420132_421164_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_014569074.1\|421402_422317_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014569075.1\|422349_422700_+	PRD domain-containing protein	NA	NA	NA	NA
WP_005714931.1\|422701_423064_+	DUF2620 domain-containing protein	NA	NA	NA	NA
WP_005714932.1\|423124_424420_+	YhfT family protein	NA	NA	NA	NA
WP_014569076.1\|424449_425334_+	TatD family hydrolase	NA	NA	NA	NA
WP_005714935.1\|425326_426433_+	PLP-dependent transferase	NA	NA	NA	NA
WP_014569077.1\|426423_427596_+	YhfX family PLP-dependent enzyme	NA	NA	NA	NA
WP_014569078.1\|427597_428827_+	phosphopentomutase	NA	NA	NA	NA
WP_014569079.1\|429154_429991_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_005691490.1\|430073_430634_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA
WP_014569080.1\|430635_432336_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-18	34.8
WP_014569081.1\|432332_433160_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_014569082.1\|433511_434645_-	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_003660077.1\|435474_437289_+	FIVAR domain-containing protein	NA	NA	NA	NA
WP_014569083.1\|437758_438670_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	8.4e-20	33.0
WP_003601979.1\|439011_439662_+	recombinase family protein	M9Q1K0	Clostridium_phage	1.5e-18	37.6
WP_002819966.1\|439667_439952_+	BRCT domain-containing protein	NA	NA	NA	NA
WP_076638850.1\|440690_440906_+	hypothetical protein	NA	NA	NA	NA
WP_016382272.1\|441029_441428_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_014569086.1\|441898_442978_-	class C sortase	NA	NA	NA	NA
WP_014569087.1\|443051_444056_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_014569088.1\|444058_444784_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_014569089.1\|444776_447464_-	VWA domain-containing protein	NA	NA	NA	NA
WP_014568877.1\|447604_448621_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	1.2e-35	33.4
WP_014569090.1\|449299_449857_-	hypothetical protein	NA	NA	NA	NA
WP_014569093.1\|450895_452683_-	UvrD-helicase domain-containing protein	U5PSZ2	Bacillus_phage	1.7e-08	25.9
WP_014569094.1\|452679_454770_-	AAA family ATPase	NA	NA	NA	NA
WP_014569018.1\|454887_456384_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_014569095.1\|456677_456929_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	1.1e-35	92.8
WP_014569096.1\|456982_457774_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	2.0e-147	98.9
WP_014569097.1\|458107_458956_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.3e-43	37.1
WP_101495030.1\|459160_459508_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003582045.1\|459559_459823_-	hypothetical protein	NA	NA	NA	NA
WP_003587111.1\|459882_462705_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	3.1e-73	27.7
WP_005688360.1\|463809_464964_-	cation:proton antiporter	NA	NA	NA	NA
WP_095691959.1\|465470_466258_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014569099.1\|466307_466982_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.2e-58	51.8
WP_029944056.1\|467824_469381_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_003574021.1\|469731_470652_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.3e-22	35.0
WP_014569101.1\|470686_471940_-	MFS transporter	NA	NA	NA	NA
WP_014569018.1\|472038_473535_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_014569102.1\|473536_474859_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_014569105.1\|476218_479197_+	beta-galactosidase subunit alpha	L0N6M2	Herpes_simplex_virus	1.5e-147	34.3
WP_005714951.1\|479229_480711_+	amino acid permease	NA	NA	NA	NA
WP_015764844.1\|480858_482316_+	amino acid permease	NA	NA	NA	NA
WP_005714953.1\|482583_483438_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_031541855.1\|483586_485815_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014569108.1\|486048_487248_+	MFS transporter	NA	NA	NA	NA
WP_014569109.1\|487271_488702_+	amidohydrolase	NA	NA	NA	NA
WP_014569110.1\|488787_489849_-	NAD/NADP octopine/nopaline dehydrogenase family protein	NA	NA	NA	NA
WP_014569111.1\|489845_490598_-	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-22	33.0
WP_014569112.1\|490607_491486_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_014569113.1\|491499_492168_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_014569114.1\|492164_492851_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_014569115.1\|493319_494057_-	hypothetical protein	NA	NA	NA	NA
WP_014569116.1\|494783_495329_+	DNA-directed RNA polymerase subunit sigma-24	NA	NA	NA	NA
WP_005686332.1\|495445_495598_+	YvrJ family protein	NA	NA	NA	NA
WP_014569117.1\|495609_496374_+	LysM peptidoglycan-binding domain-containing protein	A0A2P1CCE6	Lactobacillus_phage	2.3e-47	52.0
WP_014569118.1\|496594_497392_-	hypothetical protein	NA	NA	NA	NA
WP_014569119.1\|497642_498146_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014569120.1\|498153_499215_+	ABC transporter permease	NA	NA	NA	NA
WP_014569121.1\|499219_499909_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-28	37.1
WP_014569123.1\|500197_501568_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-09	26.6
WP_015764848.1\|501814_502633_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_005691594.1\|502755_503028_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_014569124.1\|503176_503941_-	DUF4111 domain-containing protein	NA	NA	NA	NA
WP_014569125.1\|504350_504779_-	hypothetical protein	NA	NA	NA	NA
WP_015764849.1\|504772_505012_-	hypothetical protein	NA	NA	NA	NA
WP_014569126.1\|504995_505352_-	hypothetical protein	NA	NA	NA	NA
WP_015764850.1\|505309_505474_-	hypothetical protein	NA	NA	NA	NA
WP_003605947.1\|506612_508031_-\|transposase	IS5-like element ISLrh3 family transposase	NA	NA	NA	NA
WP_014569127.1\|508555_509413_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014569128.1\|509622_510639_+	linear amide C-N hydrolase	M1H9I8	Acanthocystis_turfacea_Chlorella_virus	8.4e-21	28.8
WP_014569129.1\|510818_511784_-	hypothetical protein	NA	NA	NA	NA
WP_005714981.1\|512054_513749_-	oleate hydratase	NA	NA	NA	NA
WP_005691618.1\|513977_514544_-	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_005686376.1\|514633_515002_-	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA
WP_014569130.1\|515277_515859_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_014569131.1\|515845_516865_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_014569132.1\|517058_517487_-	OsmC family protein	NA	NA	NA	NA
WP_014569133.1\|517945_518629_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-24	30.9
WP_014569134.1\|518635_519808_-	hypothetical protein	NA	NA	NA	NA
WP_014569018.1\|520207_521704_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_014569136.1\|522548_522701_-	hypothetical protein	NA	NA	NA	NA
WP_014569137.1\|523074_523911_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_014569138.1\|523958_525455_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1099237 : 1138963

Lactobacillus_phage(85.42%)

capsid,terminase,tail,holin,head,portal,integrase

attL 1087150:1087164|attR 1135832:1135846

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1087150:1087164	attL	NA	NA	NA	NA
WP_014569455.1\|1099237_1100422_-\|integrase	site-specific integrase	A0A0P0I3D2	Lactobacillus_phage	7.3e-226	99.2
WP_005716132.1\|1100592_1100799_+	hypothetical protein	NA	NA	NA	NA
WP_014569456.1\|1100766_1101768_-	hypothetical protein	A0A1S5SA20	Streptococcus_phage	4.4e-06	23.3
WP_005716134.1\|1101878_1102082_-	hypothetical protein	A0A0P0IQK8	Lactobacillus_phage	8.6e-26	85.1
WP_015764910.1\|1102105_1102531_-	pyridoxamine 5'-phosphate oxidase family protein	A0A0P0I7K6	Lactobacillus_phage	2.5e-59	94.3
WP_003606997.1\|1102913_1103135_+	hypothetical protein	NA	NA	NA	NA
WP_003606998.1\|1103135_1103891_-	hypothetical protein	NA	NA	NA	NA
WP_014569458.1\|1103997_1104699_-	DUF3862 domain-containing protein	A9D9J1	Lactobacillus_prophage	5.1e-25	39.3
WP_014569459.1\|1104758_1105181_-	toxin	A0A1B0YA58	Lactobacillus_phage	5.1e-73	93.5
WP_003574523.1\|1105170_1105509_-	helix-turn-helix transcriptional regulator	A0A0P0IZG9	Lactobacillus_phage	6.6e-55	98.2
WP_014569460.1\|1105643_1105886_+	helix-turn-helix transcriptional regulator	A0A0P0HRP5	Lactobacillus_phage	4.6e-34	95.0
WP_029943629.1\|1105882_1106131_+	hypothetical protein	NA	NA	NA	NA
WP_014569461.1\|1106127_1106355_-	hypothetical protein	NA	NA	NA	NA
WP_014569462.1\|1106442_1106601_+	hypothetical protein	NA	NA	NA	NA
WP_014569463.1\|1106666_1107215_+	hypothetical protein	A0A1B0YE60	Lactobacillus_phage	1.0e-97	97.8
WP_015764912.1\|1107193_1107424_+	helix-turn-helix domain-containing protein	A0A1B0Y6A3	Lactobacillus_phage	5.5e-37	98.6
WP_014569466.1\|1107567_1107795_+	hypothetical protein	NA	NA	NA	NA
WP_014569467.1\|1108001_1108877_+	recombinase RecT	A0A1X9I5N6	Streptococcus_phage	5.7e-58	52.2
WP_014569468.1\|1108896_1109661_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	4.0e-76	54.0
WP_014569469.1\|1109676_1110633_+	DnaD domain protein	A0A1B0Y2R2	Lactobacillus_phage	2.0e-128	90.9
WP_014569470.1\|1110645_1111131_+	single-stranded DNA-binding protein	U5U726	Lactobacillus_phage	8.8e-61	86.3
WP_014569471.1\|1111148_1111364_+	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	6.1e-30	91.4
WP_015764330.1\|1111360_1111552_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014569472.1\|1111921_1112371_+	hypothetical protein	B4XYT0	Lactobacillus_phage	6.2e-69	93.2
WP_014569473.1\|1112417_1112672_+	hypothetical protein	A0A0P0IQP0	Lactobacillus_phage	4.6e-37	94.0
WP_014569474.1\|1112668_1113070_+	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	2.6e-50	71.5
WP_014569475.1\|1113082_1113547_+	hypothetical protein	A0A0P0IXF6	Lactobacillus_phage	7.2e-20	98.0
WP_014569476.1\|1113558_1113744_+	hypothetical protein	Q6J1V0	Lactobacillus_phage	5.1e-25	88.5
WP_014569477.1\|1113740_1114247_+	DUF1642 domain-containing protein	Q8LTB6	Lactobacillus_phage	8.6e-59	72.9
WP_015764915.1\|1114236_1114416_+	hypothetical protein	NA	NA	NA	NA
WP_029943632.1\|1114402_1114606_+	hypothetical protein	NA	NA	NA	NA
WP_014569478.1\|1114595_1115027_+	hypothetical protein	C1KFE8	Lactobacillus_virus	1.1e-49	69.9
WP_101495024.1\|1115020_1115386_+	hypothetical protein	C1KFE5	Lactobacillus_virus	3.2e-31	58.0
WP_014569479.1\|1115382_1115622_+	hypothetical protein	NA	NA	NA	NA
WP_029943634.1\|1115671_1115854_+	hypothetical protein	A0A0P0I365	Lactobacillus_phage	1.6e-15	61.7
WP_005711378.1\|1116148_1116577_+	hypothetical protein	NA	NA	NA	NA
WP_014569480.1\|1117604_1118753_+	hypothetical protein	B4XYU0	Lactobacillus_phage	2.4e-221	98.7
WP_014569481.1\|1118765_1119308_+	HNH endonuclease	B4XYU1	Lactobacillus_phage	1.1e-107	100.0
WP_015764918.1\|1119300_1119621_+	ribonucleoside-diphosphate reductase	A8YQN5	Lactobacillus_phage	9.0e-54	92.4
WP_014569483.1\|1119657_1120191_+\|terminase	terminase small subunit	A0A0P0IUY4	Lactobacillus_phage	2.7e-63	94.1
WP_029943635.1\|1120168_1121524_+\|terminase	PBSX family phage terminase large subunit	A4L7R3	Lactococcus_phage	4.9e-149	59.1
WP_014569485.1\|1121528_1122956_+\|portal	phage portal protein	A0A0P0IJV3	Lactobacillus_phage	2.7e-243	90.6
WP_014569486.1\|1122921_1123914_+\|capsid	minor capsid protein	A0A0P0ID43	Lactobacillus_phage	6.2e-178	95.5
WP_014569487.1\|1124038_1124695_+	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	4.3e-58	80.0
WP_014569488.1\|1124710_1125724_+	hypothetical protein	A0A0A7RVZ1	Clostridium_phage	3.1e-23	26.5
WP_014569489.1\|1125951_1126326_+\|head,tail	phage head-tail connector protein	A0A0P0IZF6	Lactobacillus_phage	3.2e-58	91.9
WP_014569490.1\|1126330_1126633_+	hypothetical protein	A0A0P0HRN0	Lactobacillus_phage	6.3e-49	93.0
WP_015764920.1\|1126629_1126995_+	HK97 gp10 family phage protein	A0A0P0IUZ3	Lactobacillus_phage	2.0e-57	96.7
WP_014569492.1\|1126995_1127400_+	DUF3168 domain-containing protein	A0A0P0I3C8	Lactobacillus_phage	3.0e-70	98.5
WP_014569493.1\|1127411_1128014_+\|tail	phage tail protein	A0A0P0ID88	Lactobacillus_phage	2.4e-100	93.5
WP_014569494.1\|1128100_1128433_+\|tail	tail assembly chaperone	A0A0P0IQQ6	Lactobacillus_phage	2.4e-49	94.5
WP_015764921.1\|1128537_1128891_+	hypothetical protein	A0A0P0I7N9	Lactobacillus_phage	5.3e-55	96.6
WP_014569496.1\|1128883_1131973_+	tape measure protein	A0A0P0IJD2	Lactobacillus_phage	1.4e-263	88.0
WP_015764922.1\|1131975_1133964_+\|tail	phage tail family protein	B4XYQ4	Lactobacillus_phage	0.0e+00	85.9
WP_014569498.1\|1133963_1136471_+\|tail	phage tail protein	B4XYQ5	Lactobacillus_phage	0.0e+00	82.6
1135832:1135846	attR	NA	NA	NA	NA
WP_005686996.1\|1136480_1136804_+	hypothetical protein	B4XYQ6	Lactobacillus_phage	1.1e-51	98.1
WP_014569499.1\|1136796_1136928_+	XkdX family protein	A0A0P0HRS7	Lactobacillus_phage	2.5e-18	97.7
WP_014569500.1\|1136957_1137251_+	hypothetical protein	B4XYQ7	Lactobacillus_phage	5.3e-45	94.8
WP_014569501.1\|1137240_1137654_+\|holin	phage holin	A0A0P0IDC6	Lactobacillus_phage	1.4e-43	97.9
WP_014569502.1\|1137664_1138963_+	LysM peptidoglycan-binding domain-containing protein	B4XYQ9	Lactobacillus_phage	1.2e-232	99.1

DBSCAN-SWA_3

1492248 : 1592201

Lactobacillus_phage(36.11%)

capsid,terminase,holin,tail,tRNA,head,transposase,portal,integrase

attL 1525032:1525091|attR 1559644:1559804

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005685893.1\|1492248_1493547_-\|tRNA	asparagine--tRNA ligase	M1PB22	Moumouvirus	2.9e-50	28.2
WP_005685894.1\|1493570_1494746_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_005685895.1\|1494798_1495290_-	DUF5590 domain-containing protein	NA	NA	NA	NA
WP_005685896.1\|1495564_1498366_-	ribonuclease H-like domain-containing protein	A0A1X9I5C8	Streptococcus_phage	1.1e-54	33.3
WP_005685897.1\|1498409_1502120_-	helicase-exonuclease AddAB subunit AddA	S5MMD7	Bacillus_phage	6.4e-18	22.2
WP_005685898.1\|1502116_1505656_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_005685900.1\|1506070_1507006_+	mevalonate kinase	NA	NA	NA	NA
WP_005685903.1\|1507013_1508018_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
WP_005685905.1\|1507983_1509018_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_014569664.1\|1509124_1510456_-	RsmF rRNA methyltransferase first C-terminal domain-containing protein	NA	NA	NA	NA
WP_005685909.1\|1510442_1511399_-	ABC transporter permease	NA	NA	NA	NA
WP_005685911.1\|1511600_1512344_-	hypothetical protein	NA	NA	NA	NA
WP_005685914.1\|1512459_1512810_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_005685917.1\|1512843_1513032_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_005685919.1\|1513489_1514995_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_005685921.1\|1514960_1516691_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-06	24.3
WP_005685922.1\|1517065_1517860_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_005685924.1\|1517846_1518557_-\|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	NA	NA	NA	NA
WP_005685926.1\|1518745_1519996_-	RNA polymerase sigma factor RpoD	F4YCU2	Synechococcus_phage	1.1e-38	38.9
WP_005685928.1\|1520009_1521779_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.2e-56	31.4
WP_014569666.1\|1521964_1524034_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_005685932.1\|1524035_1524932_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
1525032:1525091	attL	NA	NA	NA	NA
WP_014569667.1\|1525337_1526507_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	2.6e-42	31.8
WP_029943783.1\|1526549_1526876_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014569668.1\|1527711_1528098_-	hypothetical protein	NA	NA	NA	NA
WP_014569669.1\|1528288_1529443_-	LysM peptidoglycan-binding domain-containing protein	Q6J1W8	Lactobacillus_phage	9.9e-143	66.2
WP_014569670.1\|1529445_1529778_-\|holin	phage holin	Q3L0R7	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	2.0e-32	100.0
WP_003579629.1\|1529790_1530024_-	hypothetical protein	Q3L0R9	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	2.6e-34	98.7
WP_005689480.1\|1530048_1530180_-	XkdX family protein	Q3L0S0	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	4.2e-18	90.7
WP_014569672.1\|1530172_1530496_-	hypothetical protein	B4XYQ6	Lactobacillus_phage	5.0e-52	99.1
WP_014569673.1\|1530505_1533439_-\|tail	phage tail protein	B4XYQ5	Lactobacillus_phage	1.1e-311	68.7
WP_014569674.1\|1533444_1535502_-\|tail	phage tail family protein	Q6J1X4	Lactobacillus_phage	1.3e-153	48.1
WP_015764958.1\|1535502_1539669_-\|tail	tail protein	A8YQJ9	Lactobacillus_phage	0.0e+00	79.4
WP_021354705.1\|1539674_1539905_-	hypothetical protein	Q3L0S5	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	5.0e-38	98.7
WP_014569677.1\|1539882_1540233_-\|tail	tail protein	Q6J1X6	Lactobacillus_phage	2.2e-53	95.7
WP_014569678.1\|1540387_1541023_-\|tail	phage tail protein	Q3L0S7	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	9.1e-98	89.6
WP_015764960.1\|1541023_1541404_-	DUF806 family protein	Q3L0S8	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	9.0e-61	92.9
WP_014569680.1\|1541400_1541820_-	HK97 gp10 family phage protein	Q3L0S9	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	1.9e-64	90.6
WP_029943782.1\|1541822_1542167_-\|head	phage head closure protein	A8YQJ4	Lactobacillus_phage	1.1e-49	85.8
WP_014569682.1\|1542156_1542447_-	hypothetical protein	NA	NA	NA	NA
WP_014569683.1\|1542518_1544447_-\|capsid	phage major capsid protein	A0A2P0ZLF9	Lactobacillus_phage	1.2e-68	46.1
WP_015764961.1\|1544446_1545547_-\|portal	phage portal protein	Q9AZM4	Lactococcus_phage	9.6e-79	43.6
WP_029943780.1\|1545543_1545726_-	DUF1056 family protein	NA	NA	NA	NA
WP_014569685.1\|1545849_1547742_-\|terminase	terminase large subunit	A0A0M7RDK9	Lactobacillus_phage	3.5e-153	44.0
WP_014569686.1\|1547735_1548200_-\|terminase	phage terminase small subunit P27 family	B8R648	Lactobacillus_phage	3.1e-23	39.7
WP_015764963.1\|1548681_1549242_-	recombinase family protein	A0A1J1J8Z4	Escherichia_phage	2.5e-35	44.2
WP_107755075.1\|1549474_1549651_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_014569687.1\|1549647_1550397_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014569018.1\|1550462_1551959_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_014569688.1\|1552615_1552894_-	hypothetical protein	NA	NA	NA	NA
WP_015764964.1\|1552886_1553327_-	HNH endonuclease	B8R694	Lactobacillus_phage	9.3e-25	54.0
WP_015764965.1\|1553425_1553830_-	single-stranded DNA-binding protein	L0P8Q2	Lactobacillus_phage	1.4e-14	40.0
WP_014569689.1\|1553816_1554584_-	hypothetical protein	NA	NA	NA	NA
WP_015764966.1\|1554584_1554791_-	hypothetical protein	NA	NA	NA	NA
WP_048653167.1\|1554851_1555433_-	HNH endonuclease	M1NMU3	Moumouvirus	5.7e-14	33.8
WP_014569690.1\|1555839_1557078_-	hypothetical protein	NA	NA	NA	NA
WP_029944087.1\|1557116_1557344_-	hypothetical protein	NA	NA	NA	NA
WP_005685933.1\|1559922_1560450_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
1559644:1559804	attR	NA	NA	NA	NA
WP_005685935.1\|1560546_1561176_-	ABC-2 transporter permease	NA	NA	NA	NA
WP_005685938.1\|1561172_1561886_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-12	28.6
WP_005687657.1\|1562540_1562852_-	hypothetical protein	NA	NA	NA	NA
WP_005687658.1\|1563002_1563818_-	DNA repair protein RecO	NA	NA	NA	NA
WP_005687659.1\|1563817_1564720_-	GTPase Era	NA	NA	NA	NA
WP_005713928.1\|1564716_1565106_-	cytidine deaminase	NA	NA	NA	NA
WP_005687661.1\|1565109_1565508_-	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_005687662.1\|1565491_1565950_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_005687663.1\|1565953_1566940_-	PhoH family protein	L7TP00	Rhizobium_phage	3.2e-49	45.2
WP_005687664.1\|1567506_1567941_-	GatB/YqeY domain-containing protein	A0A0K2FLI9	Brevibacillus_phage	9.5e-14	39.0
WP_005687665.1\|1567968_1568145_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_005687666.1\|1568417_1569248_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_005687667.1\|1569244_1570132_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.1e-20	27.0
WP_005687668.1\|1570279_1571200_-	YitT family protein	NA	NA	NA	NA
WP_005687669.1\|1571504_1571951_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_005687670.1\|1572036_1573842_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_014569692.1\|1573843_1575127_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_005687672.1\|1575680_1577189_-	ABC transporter permease	NA	NA	NA	NA
WP_005687673.1\|1577185_1578061_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	5.4e-24	31.0
WP_005687674.1\|1578260_1578707_+	hypothetical protein	NA	NA	NA	NA
WP_005687675.1\|1578794_1580117_+	N-acetylmuramoyl-L-alanine amidase	J9PV86	Bacillus_phage	3.0e-10	30.2
WP_005687676.1\|1580218_1580845_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_005687677.1\|1580844_1581291_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_005687678.1\|1581417_1583643_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	3.1e-07	35.1
WP_005687679.1\|1583947_1584271_-	hypothetical protein	NA	NA	NA	NA
WP_014569694.1\|1584308_1585037_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_005687681.1\|1585075_1586020_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_005687682.1\|1586100_1586595_-	DUF3013 family protein	NA	NA	NA	NA
WP_005687683.1\|1586591_1587197_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_005687684.1\|1587302_1587551_+	hypothetical protein	NA	NA	NA	NA
WP_005687685.1\|1587619_1588006_-	YxeA family protein	NA	NA	NA	NA
WP_005687686.1\|1588290_1588470_-	hypothetical protein	NA	NA	NA	NA
WP_005687687.1\|1588469_1588856_-	hypothetical protein	NA	NA	NA	NA
WP_005687688.1\|1589273_1589864_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_005687689.1\|1589866_1590424_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014569018.1\|1590704_1592201_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2103151 : 2110024

Lactococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014569868.1\|2103151_2104081_-	DUF4065 domain-containing protein	Q9AZG0	Lactococcus_phage	4.5e-53	38.1
WP_101495023.1\|2104092_2104419_-	type II toxin-antitoxin system MqsR family toxin	Q9AZG1	Lactococcus_phage	4.8e-10	39.6
WP_005715269.1\|2104712_2105213_-	QueT transporter family protein	E7DN70	Pneumococcus_phage	4.7e-09	29.3
WP_014569870.1\|2105329_2106043_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
WP_005712952.1\|2106039_2106264_-	DUF2829 domain-containing protein	G3MBC9	Bacillus_virus	4.3e-10	40.4
WP_005686244.1\|2106544_2106856_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014569871.1\|2107103_2107742_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_005692769.1\|2107986_2108970_-	ATP-binding cassette domain-containing protein	Q6GZ03	Mycoplasma_phage	1.7e-10	33.0
WP_005692768.1\|2108971_2110024_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-20	32.9

DBSCAN-SWA_5

2393613 : 2465513

Bacillus_phage(27.27%)

protease,bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014570035.1\|2393613_2395020_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	2.1e-54	31.5
WP_005686130.1\|2395163_2396039_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_005686125.1\|2398539_2399109_-	hypothetical protein	NA	NA	NA	NA
WP_005686122.1\|2399745_2401239_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_014570039.1\|2401789_2402620_-\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_014570040.1\|2402633_2403650_-	membrane protein	NA	NA	NA	NA
WP_014570041.1\|2403646_2404033_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014570042.1\|2404164_2405793_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_015765046.1\|2406290_2407607_-	MucBP domain-containing protein	NA	NA	NA	NA
WP_005686113.1\|2408707_2409823_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_014570045.1\|2409843_2411208_-	DNA repair protein RadA	NA	NA	NA	NA
WP_005686110.1\|2411227_2411767_-	dUTP diphosphatase	J9PV85	Bacillus_phage	4.4e-37	48.0
WP_014570047.1\|2412407_2412698_+	N-acetyltransferase	NA	NA	NA	NA
WP_014570048.1\|2412992_2414312_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	2.3e-63	35.8
WP_005714538.1\|2414456_2415803_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	1.3e-72	38.5
WP_014570049.1\|2416019_2417120_+	ABC transporter	NA	NA	NA	NA
WP_014570050.1\|2417116_2418313_+	ABC transporter	NA	NA	NA	NA
WP_005686102.1\|2418326_2419202_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.1e-12	25.9
WP_014570051.1\|2419353_2421408_+	KUP/HAK/KT family potassium transporter	A7K9V6	Acanthocystis_turfacea_chlorella_virus	2.1e-63	32.9
WP_014570052.1\|2421614_2424245_-	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	2.8e-84	38.9
WP_076638835.1\|2424544_2425132_-	CBS domain-containing protein	NA	NA	NA	NA
WP_005692313.1\|2425303_2425975_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_014570054.1\|2426132_2427251_+	low temperature requirement protein A	NA	NA	NA	NA
WP_005686095.1\|2427269_2427554_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_014570055.1\|2427799_2428915_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_005686092.1\|2429077_2429287_-	CsbD family protein	NA	NA	NA	NA
WP_014570056.1\|2429852_2430041_-	hypothetical protein	NA	NA	NA	NA
WP_014570057.1\|2430052_2430250_-	hypothetical protein	NA	NA	NA	NA
WP_005686089.1\|2431044_2431302_-	hypothetical protein	NA	NA	NA	NA
WP_005686086.1\|2431491_2431698_-	hypothetical protein	NA	NA	NA	NA
WP_014570058.1\|2431926_2432142_-	hypothetical protein	NA	NA	NA	NA
WP_015764702.1\|2432711_2433944_+	MFS transporter	NA	NA	NA	NA
WP_014570059.1\|2434013_2435270_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.0e-109	55.6
WP_005698939.1\|2435350_2436187_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	7.4e-47	41.9
WP_005692296.1\|2436635_2436821_-	hypothetical protein	NA	NA	NA	NA
WP_014570061.1\|2437397_2437940_-	hypothetical protein	NA	NA	NA	NA
WP_014570062.1\|2438169_2438994_-	class C sortase	NA	NA	NA	NA
WP_014570063.1\|2439000_2440554_-	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_014570064.1\|2440544_2441900_-	hypothetical protein	NA	NA	NA	NA
WP_014570065.1\|2441901_2444853_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_014570066.1\|2445127_2445685_-	hypothetical protein	NA	NA	NA	NA
WP_014570067.1\|2445853_2447062_-	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_014570068.1\|2447254_2448310_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_014570069.1\|2448602_2449250_+	helix-turn-helix transcriptional regulator	A0A0S2MVM8	Bacillus_phage	2.2e-06	38.7
WP_005687855.1\|2449380_2449713_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_014570070.1\|2449709_2450495_+	hypothetical protein	NA	NA	NA	NA
WP_014570071.1\|2450538_2451315_+	hypothetical protein	NA	NA	NA	NA
WP_014570072.1\|2451342_2451633_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_048653151.1\|2451760_2452843_+	aldo/keto reductase	NA	NA	NA	NA
WP_005711099.1\|2453145_2454501_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_005692253.1\|2454677_2455088_-	hypothetical protein	NA	NA	NA	NA
WP_014570076.1\|2455148_2456528_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_014570077.1\|2456540_2458733_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	3.6e-37	25.5
WP_005692249.1\|2458981_2459116_-	hypothetical protein	NA	NA	NA	NA
WP_014570078.1\|2459291_2460605_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_014570079.1\|2460597_2461386_+	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014570081.1\|2464224_2464524_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005686855.1\|2464700_2464859_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_014570083.1\|2465327_2465513_-\|bacteriocin	bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_6

2928760 : 2956178

Lactobacillus_phage(22.22%)

capsid,terminase,transposase,portal,integrase

attL 2943893:2943913|attR 2958022:2958042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107755086.1\|2928760_2929654_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-37	33.7
WP_005685752.1\|2929847_2931242_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_029944068.1\|2931388_2931964_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA
WP_005685750.1\|2932077_2932497_-	YjdF family protein	NA	NA	NA	NA
WP_005685749.1\|2932780_2933071_-	hypothetical protein	NA	NA	NA	NA
WP_005685748.1\|2933164_2933413_-	hypothetical protein	NA	NA	NA	NA
WP_014570217.1\|2934859_2936185_-	2-hydroxycarboxylate transporter family protein	A0A140XAH4	Dickeya_phage	2.1e-16	52.9
WP_014570218.1\|2936331_2937867_+	sensor histidine kinase	NA	NA	NA	NA
WP_005685744.1\|2937863_2938553_+	response regulator	NA	NA	NA	NA
WP_005685743.1\|2938738_2939254_-	hypothetical protein	NA	NA	NA	NA
WP_014570220.1\|2940127_2940982_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_005685739.1\|2941304_2941703_-	hypothetical protein	NA	NA	NA	NA
WP_005685738.1\|2941875_2942556_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_005685737.1\|2942734_2943664_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
2943893:2943913	attL	NA	NA	NA	NA
WP_014570221.1\|2944010_2945168_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	1.3e-46	33.2
WP_014570222.1\|2945285_2945897_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029944073.1\|2946011_2946224_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014570223.1\|2946248_2946524_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014570224.1\|2946591_2946813_+	hypothetical protein	NA	NA	NA	NA
WP_014570225.1\|2946923_2947115_+	hypothetical protein	NA	NA	NA	NA
WP_014570226.1\|2947159_2947432_+	hypothetical protein	NA	NA	NA	NA
WP_015765113.1\|2947428_2947617_+	hypothetical protein	NA	NA	NA	NA
WP_014570227.1\|2947600_2948428_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	4.5e-12	34.9
WP_014570228.1\|2948420_2949845_+	virulence protein	A0A1W6JQD6	Staphylococcus_phage	6.6e-64	37.6
WP_014570229.1\|2950124_2950547_+	hypothetical protein	NA	NA	NA	NA
WP_172619743.1\|2950628_2951003_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	3.8e-11	39.8
WP_014570231.1\|2951127_2951598_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_014570232.1\|2951594_2953298_+\|terminase	terminase	E9LUI0	Lactobacillus_phage	5.4e-121	40.6
WP_015765114.1\|2953263_2953443_+	hypothetical protein	NA	NA	NA	NA
WP_014570233.1\|2953447_2954632_+\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	2.4e-59	34.4
WP_014570234.1\|2954618_2956178_+\|capsid	phage major capsid protein	A0A2H4J9X8	uncultured_Caudovirales_phage	3.3e-32	29.8
2958022:2958042	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_017482.1|WP_029943629.1|1105882_1106131_+|hypothetical-protein

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Acr_ID: NC_017482.1|WP_014569461.1|1106127_1106355_-|hypothetical-protein

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Acr_ID: NC_017482.1|WP_014569459.1|1104758_1105181_-|toxin

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Acr_ID: NC_017482.1|WP_107755075.1|1549474_1549651_+|LPXTG-cell-wall-anchor-domain-containing-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017482.1|WP_029943629.1|1105882_1106131_+|hypothetical-protein

1105882_1106131_+

82 aa aa

1099237-1138963

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017482_2	TypeII	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	1114215-1114186	2

1. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_017482 position: 1114215-1114186, mismatch: 2

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtattgcaagccgtagtgctcgatct	Protospacer
****** ************.**********

NC_017482.1|WP_014569461.1|1106127_1106355_-|hypothetical-protein

1106127_1106355_-

75 aa aa

1099237-1138963

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017482_2	TypeII	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	1114215-1114186	2

1. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_017482 position: 1114215-1114186, mismatch: 2

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtattgcaagccgtagtgctcgatct	Protospacer
****** ************.**********

NC_017482.1|WP_014569459.1|1104758_1105181_-|toxin

1104758_1105181_-

140 aa aa

1099237-1138963

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017482_2	TypeII	2.12\|2261023\|30\|NC_017482\|CRT,CRISPRCasFinder,PILER-CR	2261023-2261052	30	1114215-1114186	2

1. spacer 2.12|2261023|30|NC_017482|CRT,CRISPRCasFinder,PILER-CR matches to NC_017482 position: 1114215-1114186, mismatch: 2

cgcagtcttgcaagccgtaatgctcgatct	CRISPR spacer
cgcagtattgcaagccgtagtgctcgatct	Protospacer
****** ************.**********

NC_017482.1|WP_107755075.1|1549474_1549651_+|LPXTG-cell-wall-anchor-domain-containing-protein

1549474_1549651_+

58 aa aa

1492248-1592201

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017482_3	Orphan	3.1\|2509365\|52\|NC_017482\|CRISPRCasFinder	2509365-2509416	52	1511530-1511479	2

1. spacer 3.1|2509365|52|NC_017482|CRISPRCasFinder matches to NC_017482 position: 1511530-1511479, mismatch: 2

tccccggcgcagaagtctgcgtgtaaggaccttagccgcaatggccaaagac	CRISPR spacer
tccccggcgcagaagtctgcgtgtaaggaccacagccgcaatggccaaagac	Protospacer
******************************* .*******************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017482

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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