Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_004369 Corynebacterium efficiens YS-314, complete genome 6 crisprs DEDDh,csa3,cas3,WYL,DinG 1 7 7 0
NC_004319 Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence 0 crisprs NA 0 0 0 0
NC_004320 Corynebacterium efficiens YS-314 plasmid pCE3, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NC_004369
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004369_1 1241444-1242982 Orphan NA
21 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004369_2 1272926-1273038 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004369_4 1985534-1985613 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004369_3 1985360-1985461 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004369_5 2814983-2815109 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004369_6 2827257-2827372 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_004369_1 1.20|1242835|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1242835-1242871 37 NC_004369.1 907552-907588 1 0.973

1. spacer 1.20|1242835|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to position: 907552-907588, mismatch: 1, identity: 0.973

ttcctcatcgacgccacgatcgattccatagtggtcc	CRISPR spacer
ttcctcatcgacgccacggtcgattccatagtggtcc	Protospacer
******************.******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_004369_1 1.6|1241839|35|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241839-1241873 35 NC_004319 Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence 8122-8156 2 0.943
NC_004369_1 1.11|1242193|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1242193-1242226 34 NC_013860 Azospirillum sp. B510 plasmid pAB510f, complete sequence 52210-52243 8 0.765
NC_004369_1 1.19|1242765|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1242765-1242798 34 MN582104 Siphoviridae sp. ctvD11, complete genome 22662-22695 8 0.765
NC_004369_1 1.6|1241839|35|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241839-1241873 35 NC_004319 Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence 7185-7219 9 0.743
NC_004369_1 1.16|1242548|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1242548-1242581 34 NZ_CP030864 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence 486205-486238 9 0.735
NC_004369_1 1.18|1242690|39|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1242690-1242728 39 NC_020062 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence 2043296-2043334 9 0.769
NC_004369_1 1.19|1242765|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1242765-1242798 34 NZ_CP015006 Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence 90489-90522 9 0.735
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 MF185727 Mycobacterium phage BobSwaget, complete genome 41757-41793 10 0.73
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 EU744250 Mycobacterium virus Pukovnik, complete genome 44735-44771 10 0.73
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 592663-592699 11 0.703
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 MN369748 Mycobacterium phage Miko, complete genome 43159-43195 11 0.703
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 MK801735 Mycobacterium Phage Rachaly, complete genome 43304-43340 11 0.703
NC_004369_4 4.1|1985557|34|NC_004369|CRISPRCasFinder 1985557-1985590 34 NZ_CP011515 Mitsuaria sp. 7 plasmid, complete sequence 101366-101399 11 0.676
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 MT658804 Mycobacterium phage BengiVuitton, complete genome 43845-43881 12 0.676
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 KX619650 Mycobacterium phage Jerm, complete genome 44212-44248 12 0.676
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 MF472896 Mycobacterium phage JoshKayV, complete genome 44238-44274 12 0.676
NC_004369_1 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT 1241621-1241657 37 MH825704 Mycobacterium phage LilTurb, complete genome 44093-44129 12 0.676

1. spacer 1.6|1241839|35|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to NC_004319 (Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence) position: , mismatch: 2, identity: 0.943

agaccttcatacaggtttacagcaccagtaaagct	CRISPR spacer
aaacctttatacaggtttacagcaccagtaaagct	Protospacer
*.*****.***************************

2. spacer 1.11|1242193|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 8, identity: 0.765

tgaggacctcaccatctacgacacgtccgatcag	CRISPR spacer
ccgcggcatcaccttctacgacacgtccgatctg	Protospacer
. . *.* ***** ****************** *

3. spacer 1.19|1242765|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to MN582104 (Siphoviridae sp. ctvD11, complete genome) position: , mismatch: 8, identity: 0.765

gaatcgtagaggatgccatcctccacaaagcaaa	CRISPR spacer
ctggcgtagagaatgccatcttccacaaagaaga	Protospacer
  . *******.********.********* *.*

4. spacer 1.6|1241839|35|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to NC_004319 (Corynebacterium efficiens YS-314 plasmid pCE2, complete sequence) position: , mismatch: 9, identity: 0.743

agaccttcatacaggtttacagcaccagtaaagct	CRISPR spacer
taacaggtttacaggtttacagcacctgtaaacct	Protospacer
 .**   . ***************** ***** **

5. spacer 1.16|1242548|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

ggctgcagcgggcgctgtggagctcgctggaaga	CRISPR spacer
cgacgcagcgggtgctgtggtgctcgctgaccta	Protospacer
 * .********.******* ********.   *

6. spacer 1.18|1242690|39|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 9, identity: 0.769

tggtgcgccctcgatgaggcggttgaccttctccaccag	CRISPR spacer
cgatccctcttcgatgtggcggttgacgttctccaccac	Protospacer
.*.* * .*.****** ********** ********** 

7. spacer 1.19|1242765|34|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015006 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA01, complete sequence) position: , mismatch: 9, identity: 0.735

gaatcgtagaggatgccatcctccacaaagcaaa	CRISPR spacer
gaatcgtagaggaagccaccctcctccaccacca	Protospacer
************* ****.***** * *     *

8. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to MF185727 (Mycobacterium phage BobSwaget, complete genome) position: , mismatch: 10, identity: 0.73

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
ctacggcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
.* .*  * ********.*** *************  

9. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to EU744250 (Mycobacterium virus Pukovnik, complete genome) position: , mismatch: 10, identity: 0.73

ttttgcg-----gacgatgtagtccccaaccttgatgccggg	CRISPR spacer
-----cgaccgcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
     **     * ********.*** *************  

10. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.703

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
ccttcttcgcgatgtagtccacacccttgatgccgct	Protospacer
..** .  .*********** ** ***********  

11. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to MN369748 (Mycobacterium phage Miko, complete genome) position: , mismatch: 11, identity: 0.703

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
cgacggcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
.  .*  * ********.*** *************  

12. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to MK801735 (Mycobacterium Phage Rachaly, complete genome) position: , mismatch: 11, identity: 0.703

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
cgacggcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
.  .*  * ********.*** *************  

13. spacer 4.1|1985557|34|NC_004369|CRISPRCasFinder matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 11, identity: 0.676

cgacggcacccggggtcggggctgtcggcttctg	CRISPR spacer
gtgcggcactcggggtcggagctgtcggagagga	Protospacer
  .******.*********.********     .

14. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to MT658804 (Mycobacterium phage BengiVuitton, complete genome) position: , mismatch: 12, identity: 0.676

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
cgacagcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
.  ..  * ********.*** *************  

15. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to KX619650 (Mycobacterium phage Jerm, complete genome) position: , mismatch: 12, identity: 0.676

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
ccacagcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
.. ..  * ********.*** *************  

16. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to MF472896 (Mycobacterium phage JoshKayV, complete genome) position: , mismatch: 12, identity: 0.676

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
ccacagcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
.. ..  * ********.*** *************  

17. spacer 1.3|1241621|37|NC_004369|PILER-CR,CRISPRCasFinder,CRT matches to MH825704 (Mycobacterium phage LilTurb, complete genome) position: , mismatch: 12, identity: 0.676

ttttgcggacgatgtagtccccaaccttgatgccggg	CRISPR spacer
ccacagcgtcgatgtagccccgaaccttgatgccgtc	Protospacer
.. ..  * ********.*** *************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 203047 : 273089 54 Pacmanvirus(14.29%) holin,transposase,tRNA NA
DBSCAN-SWA_2 285678 : 320833 33 Gordonia_phage(25.0%) transposase,protease,integrase,holin attL 282595:282611|attR 312169:312185
DBSCAN-SWA_3 371108 : 418437 36 Sphingomonas_phage(11.11%) transposase,tRNA NA
DBSCAN-SWA_4 871791 : 878821 11 Corynebacterium_phage(50.0%) integrase attL 862933:862946|attR 880087:880100
DBSCAN-SWA_5 883275 : 894286 12 Gordonia_phage(55.56%) NA NA
DBSCAN-SWA_6 1240039 : 1352777 90 Shigella_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_7 3134783 : 3143432 9 Orpheovirus(14.29%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage