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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_004547 Pectobacterium atrosepticum SCRI1043, complete genome 8 crisprs RT,csa3,cas3,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,WYL 1 18 7 0

Results visualization

1. NC_004547
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_1 10409-10508 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_2 30580-30679 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_3 821005-821109 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_4 891797-891897 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_5 1434557-1434658 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_6 4124152-4125860 TypeI-F I-F
28 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_7 4134776-4134984 TypeI-F I-F
3 spacers
cas6f,cas7f,cas5f,cas8f,cas3f,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_004547_8 4135961-4136589 TypeI-F I-F
10 spacers
cas6f,cas7f,cas5f,cas8f,cas3f,cas1

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_004547_8 8.6|4136290|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136290-4136321 32 NC_004547.2 628029-628060 0 1.0

1. spacer 8.6|4136290|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to position: 628029-628060, mismatch: 0, identity: 1.0

tccagtactcaggatcgtgttggtacgataaa	CRISPR spacer
tccagtactcaggatcgtgttggtacgataaa	Protospacer
********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_004547_6 6.9|4124661|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4124661-4124692 32 KC170283 Uncultured bacterium plasmid pDS1, complete sequence 34243-34274 1 0.969
NC_004547_8 8.2|4136049|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136049-4136080 32 MT012729 Salmonella phage vB_SenTO17, complete genome 14893-14924 4 0.875
NC_004547_6 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125081-4125112 32 MN187550 Escherichia phage phiv142-3, complete genome 18100-18131 5 0.844
NC_004547_6 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125081-4125112 32 JQ011317 Escherichia phage TL-2011b, complete genome 20358-20389 5 0.844
NC_004547_6 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125081-4125112 32 KM389361 UNVERIFIED: Escherichia phage Phi05_1387 B clone contig00002 genomic sequence 3500-3531 5 0.844
NC_004547_6 6.22|4125441|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125441-4125472 32 NZ_CP031083 Paracoccus yeei strain CCUG 32053 plasmid pYEE5, complete sequence 26662-26693 7 0.781
NC_004547_7 7.1|4134804|32|NC_004547|CRISPRCasFinder 4134804-4134835 32 KY271400 Klebsiella phage 6 LV-2017, complete genome 9070-9101 7 0.781
NC_004547_8 8.4|4136170|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136170-4136201 32 KT630649 Salmonella phage SEN34, complete genome 21546-21577 7 0.781
NC_004547_6 6.10|4124721|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4124721-4124752 32 MN850583 Escherichia phage glasur, complete genome 22093-22124 8 0.75
NC_004547_6 6.24|4125561|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125561-4125592 32 NZ_CP047261 Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence 146946-146977 8 0.75
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NC_015314 Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence 170481-170512 8 0.75
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 1897513-1897544 8 0.75
NC_004547_6 6.27|4125741|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125741-4125772 32 NZ_AP017309 Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome 113938-113969 8 0.75
NC_004547_6 6.28|4125801|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125801-4125832 32 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 1955008-1955039 8 0.75
NC_004547_8 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136470-4136501 32 MT771346 Gordonia phage MichaelScott, complete genome 47211-47242 8 0.75
NC_004547_8 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136470-4136501 32 MH155867 Gordonia phage Easley, complete genome 45531-45562 8 0.75
NC_004547_8 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136470-4136501 32 MK801729 Gordonia phage Clark, complete genome 46530-46561 8 0.75
NC_004547_8 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136470-4136501 32 MG845393 Gordonia phage Beenie, complete genome 46767-46798 8 0.75
NC_004547_8 8.10|4136530|32|NC_004547|CRISPRCasFinder,CRT 4136530-4136561 32 NZ_CP028350 Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence 173166-173197 8 0.75
NC_004547_8 8.10|4136530|32|NC_004547|CRISPRCasFinder,CRT 4136530-4136561 32 NC_014258 Pantoea vagans C9-1 plasmid pPag3, complete sequence 401825-401856 8 0.75
NC_004547_6 6.1|4124180|33|NC_004547|CRISPRCasFinder,CRT 4124180-4124212 33 NZ_CP054036 Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence 188532-188564 9 0.727
NC_004547_6 6.1|4124180|33|NC_004547|CRISPRCasFinder,CRT 4124180-4124212 33 NC_013860 Azospirillum sp. B510 plasmid pAB510f, complete sequence 151316-151348 9 0.727
NC_004547_6 6.5|4124421|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4124421-4124452 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 943451-943482 9 0.719
NC_004547_6 6.9|4124661|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4124661-4124692 32 LC553734 Escherichia phage EK010 DNA, complete sequence 23285-23316 9 0.719
NC_004547_6 6.10|4124721|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4124721-4124752 32 MN850624 Escherichia phage usur, complete genome 19832-19863 9 0.719
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 2174896-2174927 9 0.719
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 2247594-2247625 9 0.719
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 1499090-1499121 9 0.719
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 MT663720 Pseudomonas phage DDSR119, complete genome 20166-20197 9 0.719
NC_004547_6 6.28|4125801|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125801-4125832 32 NZ_CP017105 Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence 1888607-1888638 9 0.719
NC_004547_8 8.2|4136049|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136049-4136080 32 NZ_CP034472 Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence 56382-56413 9 0.719
NC_004547_8 8.2|4136049|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136049-4136080 32 NZ_CP034477 Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence 124649-124680 9 0.719
NC_004547_8 8.3|4136109|33|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136109-4136141 33 MH617742 Inoviridae sp. isolate ctbf14, complete genome 2728-2760 9 0.727
NC_004547_6 6.1|4124180|33|NC_004547|CRISPRCasFinder,CRT 4124180-4124212 33 NZ_CP006371 Aureimonas sp. AU20 plasmid pAU20d, complete sequence 49261-49293 10 0.697
NC_004547_6 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125081-4125112 32 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 892854-892885 10 0.688
NC_004547_6 6.21|4125381|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125381-4125412 32 MT601270 Bacillus phage vB_BsuM-Goe9, complete genome 121729-121760 10 0.688
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 473564-473595 10 0.688
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NC_017957 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence 663774-663805 10 0.688
NC_004547_6 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125681-4125712 32 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 1696533-1696564 10 0.688
NC_004547_6 6.28|4125801|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR 4125801-4125832 32 HQ634195 Vibrio phage eugene 12A10 genomic sequence 1234-1265 10 0.688
NC_004547_8 8.4|4136170|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT 4136170-4136201 32 NC_011564 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG1 DNA, complete sequence 17230-17261 10 0.688
NC_004547_4 4.1|891824|47|NC_004547|CRISPRCasFinder 891824-891870 47 NZ_CP028350 Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence 450667-450713 13 0.723
NC_004547_4 4.1|891824|47|NC_004547|CRISPRCasFinder 891824-891870 47 NC_014258 Pantoea vagans C9-1 plasmid pPag3, complete sequence 116040-116086 13 0.723

1. spacer 6.9|4124661|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to KC170283 (Uncultured bacterium plasmid pDS1, complete sequence) position: , mismatch: 1, identity: 0.969

acgcttgatattgcttatggcgtgttagttca	CRISPR spacer
acgcttgatattgcttatggcgtattagttca	Protospacer
***********************.********

2. spacer 8.2|4136049|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to MT012729 (Salmonella phage vB_SenTO17, complete genome) position: , mismatch: 4, identity: 0.875

agctccgaccgacatgcgcttaaaggcggcga	CRISPR spacer
agctccgaccgacacgcgcttaaaggtggagc	Protospacer
**************.***********.** * 

3. spacer 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to MN187550 (Escherichia phage phiv142-3, complete genome) position: , mismatch: 5, identity: 0.844

gcgttaggctcgtcggtgtagatcaactttcc	CRISPR spacer
gcctgcggctggtctgtgtagatcaactttcc	Protospacer
** *  **** *** *****************

4. spacer 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to JQ011317 (Escherichia phage TL-2011b, complete genome) position: , mismatch: 5, identity: 0.844

gcgttaggctcgtcggtgtagatcaactttcc	CRISPR spacer
gcctgcggctggtctgtgtagatcaactttcc	Protospacer
** *  **** *** *****************

5. spacer 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to KM389361 (UNVERIFIED: Escherichia phage Phi05_1387 B clone contig00002 genomic sequence) position: , mismatch: 5, identity: 0.844

gcgttaggctcgtcggtgtagatcaactttcc	CRISPR spacer
gcctgcggctggtctgtgtagatcaactttcc	Protospacer
** *  **** *** *****************

6. spacer 6.22|4125441|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031083 (Paracoccus yeei strain CCUG 32053 plasmid pYEE5, complete sequence) position: , mismatch: 7, identity: 0.781

agcttgcgttgctcgtctgtcaaattgcgggt	CRISPR spacer
tgcttgcgctgctcgtctgtcatattgaagta	Protospacer
 *******.************* **** .*  

7. spacer 7.1|4134804|32|NC_004547|CRISPRCasFinder matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 7, identity: 0.781

tttcagttcaaacaggccttgccagcagttga	CRISPR spacer
atttggctcaaacaggccttgccagccattgg	Protospacer
 **..*.******************* .***.

8. spacer 8.4|4136170|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 7, identity: 0.781

tgtaggcca---tataacaaatactcaaagataac	CRISPR spacer
---atgctattttataacaaatacaaaaagataac	Protospacer
   * **.*   ************  *********

9. spacer 6.10|4124721|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to MN850583 (Escherichia phage glasur, complete genome) position: , mismatch: 8, identity: 0.75

gatcggcaaagataatcaggcactcatcaccg	CRISPR spacer
aatgtccaaggttaatcaggcactcatcacta	Protospacer
.**   ***.* ******************..

10. spacer 6.24|4125561|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047261 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence) position: , mismatch: 8, identity: 0.75

aaccgtcgctcgctggccactgtacgattcgc	CRISPR spacer
cagcgagcttcgctcgcctctgtacgattcgc	Protospacer
 * **   .***** *** *************

11. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 8, identity: 0.75

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
cttgacggccaggccgacgccgatcgccagca	Protospacer
*.******* * *************    .**

12. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

cctgacggcaacgccgacgccgat---ccgacaca	CRISPR spacer
cgtgacggcgtcgccgacgccgatcgcctggc---	Protospacer
* *******. *************   *.*.*   

13. spacer 6.27|4125741|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017309 (Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome) position: , mismatch: 8, identity: 0.75

aatcaatggctcaggggattctacaaccctaa	CRISPR spacer
gctcaatcgctcaggggattgtacaacgatgt	Protospacer
. ***** ************ ******  *. 

14. spacer 6.28|4125801|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgtccagaccgtatcgat----agtctctgc	CRISPR spacer
gcatccgtccagaacatatcgatgtgcggcct----	Protospacer
************* *.*******    .*.**    

15. spacer 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to MT771346 (Gordonia phage MichaelScott, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

16. spacer 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to MH155867 (Gordonia phage Easley, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

17. spacer 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to MK801729 (Gordonia phage Clark, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

18. spacer 8.9|4136470|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to MG845393 (Gordonia phage Beenie, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

19. spacer 8.10|4136530|32|NC_004547|CRISPRCasFinder,CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 8, identity: 0.75

gccctgaaaaaaatgggttgtgatgaccatgc-	CRISPR spacer
agggagaaaaaaatggcttttgatgacc-tgcg	Protospacer
.    *********** ** ******** *** 

20. spacer 8.10|4136530|32|NC_004547|CRISPRCasFinder,CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 8, identity: 0.75

gccctgaaaaaaatgggttgtgatgaccatgc-	CRISPR spacer
agggagaaaaaaatggcttttgatgacc-tgcg	Protospacer
.    *********** ** ******** *** 

21. spacer 6.1|4124180|33|NC_004547|CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 9, identity: 0.727

gggttgcctcggcctgaacagcgatctcgcgtg	CRISPR spacer
tctccgcctcggcctgaaccgcgttctcgcagg	Protospacer
   ..************** *** ******. *

22. spacer 6.1|4124180|33|NC_004547|CRISPRCasFinder,CRT matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 9, identity: 0.727

gggttgcctcggcctgaacagcgatctcgcgtg	CRISPR spacer
tgtccgccacggcctgaaccgcgatctcggctt	Protospacer
 * ..*** ********** *********  * 

23. spacer 6.5|4124421|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tgtcgagcgctgattcgtcggtcactggatac	CRISPR spacer
catcgagcgctggttcgtcggtcacgcggcgg	Protospacer
..**********.************  *... 

24. spacer 6.9|4124661|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to LC553734 (Escherichia phage EK010 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

acgcttgatattgcttatggcgtgttagttca	CRISPR spacer
attcacgatctttcttatggcgtgttagtgtc	Protospacer
*. * .*** ** **************** . 

25. spacer 6.10|4124721|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to MN850624 (Escherichia phage usur, complete genome) position: , mismatch: 9, identity: 0.719

gatcggcaaagataatcaggcactcatcaccg	CRISPR spacer
aatgtctaaggttaatcaggcactcatcacta	Protospacer
.**   .**.* ******************..

26. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
atggacggcaccgccgacgccgatcctcgagc	Protospacer
 . ******* ***************   *  

27. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
atggacggcaccgccgacgccgatcctcgagc	Protospacer
 . ******* ***************   *  

28. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 9, identity: 0.719

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
atggacggcaccgccgacgccgatcctcgagc	Protospacer
 . ******* ***************   *  

29. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to MT663720 (Pseudomonas phage DDSR119, complete genome) position: , mismatch: 9, identity: 0.719

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
cagaacggcaacgccgacgctgttccggctgc	Protospacer
*  .****************.* ****.*   

30. spacer 6.28|4125801|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 9, identity: 0.719

gcatccgtccagaccgtatcgatagtctctgc	CRISPR spacer
gcatccgtccagaacatatcgatgtgcggccc	Protospacer
************* *.*******.  *  . *

31. spacer 8.2|4136049|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034472 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence) position: , mismatch: 9, identity: 0.719

agctccgaccgacatgcgcttaaaggcggcga	CRISPR spacer
caagaccagcgacctgcgctgaaaggcggcga	Protospacer
 .   * * **** ****** ***********

32. spacer 8.2|4136049|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034477 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence) position: , mismatch: 9, identity: 0.719

agctccgaccgacatgcgcttaaaggcggcga	CRISPR spacer
caagaccagcgacctgcgctgaaaggcggcga	Protospacer
 .   * * **** ****** ***********

33. spacer 8.3|4136109|33|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to MH617742 (Inoviridae sp. isolate ctbf14, complete genome) position: , mismatch: 9, identity: 0.727

atgcagatattgtaactaagcatcatattgcat	CRISPR spacer
aattgaataatgtaactaagcatcaaattgaag	Protospacer
*  ...*** *************** **** * 

34. spacer 6.1|4124180|33|NC_004547|CRISPRCasFinder,CRT matches to NZ_CP006371 (Aureimonas sp. AU20 plasmid pAU20d, complete sequence) position: , mismatch: 10, identity: 0.697

gggttgcctcggcctgaacagcgatctcgcgtg	CRISPR spacer
cctgcgccgcggcctgaacggcgatctcggttt	Protospacer
    .*** **********.*********  * 

35. spacer 6.16|4125081|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.688

gcgttaggctcgtcggtgtagatcaactttcc	CRISPR spacer
tcgttaggatcgtcggtgtagatccggcgcag	Protospacer
 ******* *************** . . .  

36. spacer 6.21|4125381|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to MT601270 (Bacillus phage vB_BsuM-Goe9, complete genome) position: , mismatch: 10, identity: 0.688

ctgtcgcagtatttgacccacgacgtgatgct	CRISPR spacer
gaagctcagtatttgacccatgacttgattga	Protospacer
  . * **************.*** ****   

37. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
gactgcggcaacgcctacgacgatccgacgac	Protospacer
  . .********** *** *********.  

38. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 10, identity: 0.688

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
gtcgaccgcaacgccgccgccgatccgggggc	Protospacer
 ..*** ********* **********. .  

39. spacer 6.26|4125681|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 10, identity: 0.688

cctgacggcaacgccgacgccgatccgacaca	CRISPR spacer
atggacggcaccgccgaccccgatcctcgagc	Protospacer
 . ******* ******* *******   *  

40. spacer 6.28|4125801|32|NC_004547|CRISPRCasFinder,CRT,PILER-CR matches to HQ634195 (Vibrio phage eugene 12A10 genomic sequence) position: , mismatch: 10, identity: 0.688

gcatccgtccagaccgtatcgatagtctctgc	CRISPR spacer
aagaagtcccaaacagtatcgatagtctctgc	Protospacer
. .    .***.** *****************

41. spacer 8.4|4136170|32|NC_004547|PILER-CR,CRISPRCasFinder,CRT matches to NC_011564 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG1 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

tgtaggccatataacaaatactcaaagataac	CRISPR spacer
aaacgaagatataacaaatactgaaagttaag	Protospacer
 .  *.  ************** **** *** 

42. spacer 4.1|891824|47|NC_004547|CRISPRCasFinder matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 13, identity: 0.723

gtcgcaggagcgattttcaacaacgcaaagcgttggcccgaagtggc	CRISPR spacer
acgccgggagcgtttttgaacaacgcaaagcgttggcccgggaacgg	Protospacer
..  *.****** **** **********************...  * 

43. spacer 4.1|891824|47|NC_004547|CRISPRCasFinder matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 13, identity: 0.723

gtcgcaggagcgattttcaacaacgcaaagcgttggcccgaagtggc	CRISPR spacer
acgccgggagcgtttttgaacaacgcaaagcgttggcccgggaacgg	Protospacer
..  *.****** **** **********************...  * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1631951 : 1639855 7 Bacillus_phage(28.57%) NA NA
DBSCAN-SWA_2 1857390 : 1863225 6 uncultured_Caudovirales_phage(66.67%) NA NA
DBSCAN-SWA_3 2726215 : 2735713 10 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_4 2878625 : 2993205 108 Enterobacteria_phage(23.64%) portal,holin,tRNA,head,tail,transposase,lysis,terminase,capsid,protease,plate,integrase attL 2874785:2874803|attR 2992680:2992698
DBSCAN-SWA_5 3744802 : 3750215 6 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_6 4144590 : 4212789 76 Burkholderia_phage(35.9%) holin,tail,transposase,capsid,plate,integrase attL 4145339:4145354|attR 4159084:4159099
DBSCAN-SWA_7 4532511 : 4541350 7 Dickeya_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage