CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008309	Histophilus somni 129PT, complete sequence	1 crisprs	cas14j,DEDDh,DinG,cas3	0	0	5	0
NC_006298	Histophilus somni 129PT plasmid pHS129, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008309_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008309_1

1958278-1958871

Orphan

Consensus_repeat	Method
NCAAAGTACAAAANTTAA	CRT

16 spacers

The CRISPR arrays of NC_008309_1

>merge|NC_008309|1|1958278-1958871|CRT
ATTAAGTACAAAATTTAACCAGTGTAGGGGGACCCTCCAAAGTACAAAATTTAACCACTGGAGGGGGACCCTCCAAAGTACAAAATTTAACCAGTGAAGAAGGGTTCTTCAAAGTACAAAAATTAATCAGTGAAGGGGGACCCTTCAAAGTACAAAATTTAACCAGTGAAGAAGGGTTCTTCAAAGTACAAAAATTAATCAGTGAAGGGGGACCCTTCAAAGTACAAAATTTAACCAGTGTAGAGGGACTCTACAAAGTACAAAAATTAACCACTGTAAAGGGGCTTTACAAAGTACAAAAATTAATCAGTGAAGAAGGGTTCTACAAAGTACAAAAATTAATCAGTGTAGAGGGACTCTACAAAGTACAAAAATTAACCACTGTAAAGGGGCTTTACAAAGTACAAAAATTAATCAGTGAAGAAGGGTTCTACAAAGTACAAAAATTAATCAGTGTGTAGGGGCTACACAAAGTACAAAAATTAATCAGTGAAGAAGGGTTCTTCAAAGTACAAAATTTAATCAGTGTAGAAGGGTTCTACAAAGTACAAAAATTAACCAGTGTGTAGGGGCTACACAAAGTACAAAAATTAT

>NC_008309|1|1|1958278-1958871|CRT
ATTAAGTACAAAATTTAA	CCAGTGTAGGGGGACCCT
CCAAAGTACAAAATTTAA	CCACTGGAGGGGGACCCT
CCAAAGTACAAAATTTAA	CCAGTGAAGAAGGGTTCT
TCAAAGTACAAAAATTAA	TCAGTGAAGGGGGACCCT
TCAAAGTACAAAATTTAA	CCAGTGAAGAAGGGTTCT
TCAAAGTACAAAAATTAA	TCAGTGAAGGGGGACCCT
TCAAAGTACAAAATTTAA	CCAGTGTAGAGGGACTCT
ACAAAGTACAAAAATTAA	CCACTGTAAAGGGGCTTT
ACAAAGTACAAAAATTAA	TCAGTGAAGAAGGGTTCT
ACAAAGTACAAAAATTAA	TCAGTGTAGAGGGACTCT
ACAAAGTACAAAAATTAA	CCACTGTAAAGGGGCTTT
ACAAAGTACAAAAATTAA	TCAGTGAAGAAGGGTTCT
ACAAAGTACAAAAATTAA	TCAGTGTGTAGGGGCTAC
ACAAAGTACAAAAATTAA	TCAGTGAAGAAGGGTTCT
TCAAAGTACAAAATTTAA	TCAGTGTAGAAGGGTTCT
ACAAAGTACAAAAATTAA	CCAGTGTGTAGGGGCTAC
ACAAAGTACAAAAATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_008309.1\|WP_041604425.1\|1950593_1951910_+\|D-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235096
NC_008309.1\|WP_011609862.1\|1952411_1953263_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_008309.1\|WP_011609876.1\|1964536_1965055_+\|hypothetical-protein	unknown	unknown	unknown
NC_008309.1\|WP_011609865.1\|1956338_1956890_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NC_008309.1\|WP_011609868.1\|1959688_1960201_+\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NC_008309.1\|WP_011609871.1\|1961362_1961557_-\|hypothetical-protein	unknown	unknown	unknown
NC_008309.1\|WP_041604422.1\|1941364_1942015_-\|TfoX/Sxy-family-DNA-transformation-protein	unknown	unknown	gnl\|CDD\|377439
NC_008309.1\|WP_011609870.1\|1961149_1961359_+\|hypothetical-protein	unknown	unknown	unknown
NC_008309.1\|WP_011609867.1\|1958895_1959648_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NC_008309.1\|WP_011609874.1\|1962694_1963465_-\|hypothetical-protein	unknown	unknown	unknown
NC_008309.1\|WP_011609860.1\|1949245_1950583_+\|D-serine-transporter-DsdX	unknown	unknown	gnl\|CDD\|182147
NC_008309.1\|WP_133098722.1\|1962300_1962732_+\|hypothetical-protein	unknown	unknown	unknown
NC_008309.1\|WP_011609863.1\|1953255_1954632_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_008309.1\|WP_011609872.1\|1961744_1962194_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NC_008309.1\|WP_011609875.1\|1963577_1964057_+\|hypothetical-protein	unknown	unknown	unknown
NC_008309.1\|WP_011609857.1\|1939321_1940830_+\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NC_008309.1\|WP_011609859.1\|1948117_1949056_-\|DNA-binding-transcriptional-regulator-DsdC	unknown	unknown	gnl\|CDD\|182231
NC_008309.1\|WP_041604420.1\|1940832_1940925_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NC_008309.1\|WP_011609864.1\|1954621_1956328_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|213858
NC_008309.1\|WP_011609869.1\|1960348_1961146_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008309.1\|WP_041604425.1\|1950593_1951910_+\|D-serine-ammonia-lyase	gnl\|CDD\|235096	PRK02991, PRK02991, D-serine dehydratase; Provisional.	0
NC_008309.1\|WP_011609862.1\|1952411_1953263_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.68303e-33
NC_008309.1\|WP_011609865.1\|1956338_1956890_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	7.26687e-60
NC_008309.1\|WP_011609868.1\|1959688_1960201_+\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	5.71109e-22
NC_008309.1\|WP_041604422.1\|1941364_1942015_-\|TfoX/Sxy-family-DNA-transformation-protein	gnl\|CDD\|377439	pfam04994, TfoX_C, TfoX C-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in Neisseria meningitidis TadA. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.	1.12452e-25
NC_008309.1\|WP_011609867.1\|1958895_1959648_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	8.29899e-109
NC_008309.1\|WP_011609860.1\|1949245_1950583_+\|D-serine-transporter-DsdX	gnl\|CDD\|182147	PRK09921, PRK09921, permease DsdX; Provisional.	0
NC_008309.1\|WP_011609863.1\|1953255_1954632_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_008309.1\|WP_011609872.1\|1961744_1962194_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	4.19383e-85
NC_008309.1\|WP_011609857.1\|1939321_1940830_+\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NC_008309.1\|WP_011609859.1\|1948117_1949056_-\|DNA-binding-transcriptional-regulator-DsdC	gnl\|CDD\|182231	PRK10086, PRK10086, DNA-binding transcriptional regulator DsdC.	0
NC_008309.1\|WP_041604420.1\|1940832_1940925_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	6.2498e-05
NC_008309.1\|WP_011609864.1\|1954621_1956328_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	1.35731e-138

>NC_008309.1|WP_011609865.1|1956338_1956890_+|DUF2857-domain-containing-protein
MLDNLNKVILDHIVNNIREGNVNTCHHLGFSTAELSEIQQLSIDEMYDIAQSKVPIAAINIDHSAFWKMVKMAQVNSQERMIIDRALLLGASIQMLNTYFGLSTTKVSARRSLLGIREEPGRKATTTDEQKTRLWELWCQHKGSIQNLESMEGLELLMLFAEETQINLTAIWRAVDPWYRNKK
>NC_008309.1|WP_011609864.1|1954621_1956328_+|ParB-N-terminal-domain-containing-protein
MNTKNKKLSDAVARNLNVTPMVNTSPSYVGATATHYPTTSQYITVTLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITQRPGEPFYIIADGGNTRIQALKELFSETQDQRFWAIECLYKPWKGETADSVEAELDLLIGHLIENDTRADLTFIEKALGIQQAKEYYEKKLGHSLSARELSSELEKDGYIIHQTTLSKMERCVAYLYPYIPDVLFNGLGNSPIDKLLAIRNNALEVWQQYQFETDIAFEAIWQNSLSRCNDDNPFNVKTFQDALINEMTDAFEGKVSYEMLYMEVDLDERKFQKLAKKQQEIDAQIQHSEEDVARFQQQQLEKSLSEPVQRIEMTETESTSAISPVSDEHAENVEKNDRTFVEDVSIDNLETETVNDIMNTVTIDEISISEPTQDLARQFAQNYGITPGMSIQAQREQQAIANGLEFACVGRQPVADIWQVYPSRQHKAEAYSLALDIAEQFGIDELVEHVVNNPVDYSFQMKAVDGSLKDDTQRTIYELLSMLQTQDLTYSEACFLDTALLLGSADREPKIDDVTLVKLFRLIRLVRYLRASA
>NC_008309.1|WP_011609863.1|1953255_1954632_+|replicative-DNA-helicase
MCKMKKSPIELYSLEAEYSVIGGLLINADRFDDVAIILNAEDFYTIQHRYIFETIASLVNQNKAVDMLTVSEYCKEKGMLEEVGGLAYLAEIAHNTPSVANIVAYAELVKQYSRQRQFLALGQFILSEMTEPKNAEKLATLAEQIEQRYTQISLNQTDKSAVKLADIFSQMIDKMEKSTLNEDPVTGTPLGIQQIDELTTGGQAGELIIIAARPAMGKTALSLTATASILDKMTDQPVFYFSQEMPADQLLQRFTAMKSRVSLQKIRRATELKVEDWSKLSDSVGRIQRDWNKRLIIDDEGALTIPRLRSKVRQYSRQYGLPAAVFIDYLQLMRGTGRIENRHLEITQISGALKALAKELGCPVYALSQLNRSLEQRTNKRPVNADLRESGSLEQDADVILFIYRDEVYHPESVDRGLAEIIIGKQRNGPLGSVKCRFYGEFSLFENEMNLGRYRYEH
>NC_008309.1|WP_011609862.1|1952411_1953263_+|ParA-family-protein
MRNSNLSKKPFIITIASTKGGSAKSTNAANIGAFCADHGLKTLLIDTDTQPTLSAYFALNYVAPGGIHEFLTYQDVEPSHIISKTTLSNLDLIQSNDPTNNVSQMLRNAPDGAIRFSFLLKKLKGYDVIIVDTRGTRDITVDMSVLAADLLFCPILPHILSAKEFIRGTMGMYQELQTFEAFGFSLPPLKAVPNCVDHTNDVKFVLGHLKQLFEQNLSADKTLLDFHIPNKVAYREAATYSLPVYRHSKAEYVVIQALCMHLLPQFAHQFEQGLSGHLGGHNV
>NC_008309.1|WP_041604425.1|1950593_1951910_+|D-serine-ammonia-lyase
MKIQHLMQDPFIQKLMRFEEVMWFNPKSAGVKTGLSYVGLDVSDTQQAAERLQRFAPYFCRAFPETQKTKGILESELVSIDKMKSALIDHYHMPIQGRLLLKKDSHLPISGSIKARGGIYEVLAYAEKLALEHHLITENDDYSQLCDEKIKDFFSRYSIAVGSTGNLGLSIGIMGAVLGFKVSVHMSADAREWKKQKLRSYGVNVVEYTQDYGVAVAQGRKAALSDPNCFFIDDENSTTLFLGYSVAGQRLKQQFLEQGIKVDENHPLFVYLPCGVGGGPGGVAFGLKLAFGDYVHCIFAEPTHSPCMLLGVYTGLHDKIAVQDLGIDNITAADGLAVGRASGFVGRAMEHLLDGFYTIEDQKLYDLLGLLHKTENIQLEPSALAGMIGPLHINHSDYLRRYHITQEQLANATHIVWATGGGMVPDVEMQKYLSLGRF
>NC_008309.1|WP_011609860.1|1949245_1950583_+|D-serine-transporter-DsdX
MNTQLYLVAVLISGLALIIFSILKLKLHPFLALLLSGFYVGILMGMKPLEMLDAIENGIGGTLGFLAAVIGLGTILGKMIEVSGGAERIGLTLQKIRWLSPDVIMVLIGLICGITLFVEVGVVLLIPLAFSIAKRTKVSLLTLAIPLCTALMAVHCIVPPHPAALYVTNALGADMGKVIIYGLLIGLFTSLFAGPVFLRMMKRQVPFKKVPEEFSSLTVRQEHELPSLFATLFTILLPIVLMLFKTLAELTIEKKTVFYTALEVIGNPITAMLIGAFVAYYLLGIKHHQSMESLLKNTENGFMAIGNILLIIGAGGAFNSILKASGLSDGLAEILANFNTHPILLAWLVAIVLHAAVGSATVAMMGATAIVSPLLVTYPDISPEIIVLAIGSGAIGCTIVTDSLFWLVKQYCGATLNDIFKYYTGATFIASVLALGFTFLLSTVI
>NC_008309.1|WP_011609859.1|1948117_1949056_-|DNA-binding-transcriptional-regulator-DsdC
MYNIEQKLRKNTSIDRHQLAKLHTFEVCARYLSFSMAAEELCITASAVSHQITKLESDLGFQLFKRSHRRIILTEEGIQLFHTLQHSLKLLNKEIFEIRNQEISGTLTIYARPSLAQSWLIPAIAGFNQKYPFITLNILTGNEVIDFNRYKVDLAIYYDDLYSENLHHYELMPESVIPVCSPEYAEKHKLYGNPKSLEHCLLLHDGQAWHYNSDFEEWESWLTYFNYSLNLNQIQSMVFDCSNLALTAAINHIGIAMGRKQLITPYLVNDQLITPFKGLEKPCNQRYYIVTPYKHNQNIHTVIHWLKKHMTF
>NC_008309.1|WP_041604422.1|1941364_1942015_-|TfoX/Sxy-family-DNA-transformation-protein
MTKSLKDTENIRSELTELIGTITVKNLFSGYGLFKKGLMFGLYQQGKFYIRAEKELAKYLESLGALSYLALTPNPQLNIGNYYLLPKEITQNKEHFRQILYLSIAQTRAKKIAQELARKKRIKDLPNLSIKHERLLSKIHIKDIKSFKLKGAANCYIELKLSGIPVNLILFWNFTAALLYKNVNVLTKTEKEQALKKLNKGLERAGLKPVEIILLQ
>NC_008309.1|WP_041604420.1|1940832_1940925_+|methionine/alanine-import-family-NSS-transporter-small-subunit
MSNSAIMMMIISLVIIWGGLVVSILRLPKE
>NC_008309.1|WP_011609857.1|1939321_1940830_+|sodium-dependent-transporter
MKDTTQKRETFSGRRAFILAAIGSAVGLGNIWRFPYTTYENGGGAFIIPYLIALLTAGIPLLFLDYAIGHRHRGGAPLSYRRFNPHFETFGWWQVLVNFIIGIYYAVILGWAASYTYFSINNFWGDKPIEFFLNEFLKMGDITQGVSFEFVGMVTGPLIAVWLIALGILALGVQKGIAKSSSILMPILVIMFVILVVSSLFLPGAEKGLDALFSPDWSKLSDPSVWIAAYGQIFFSLSICFGIMITYASYLKKDSDLTGSGLVVGFANSSFELLAGIGVFAALGFMAATAGQEVSDVAKGGIGLAFFAFPTIINQSPFGEFIGVLFFGSLTFAALTSFISVIEVIISAVQDKLRIRRVKVTFIVGLPMMFCSVILFGTTTGLPMLDVLDKFVNYFGIVAVAFVSLVAIVSNEKLTSLGNHLNETSSFKVGFIWRLCIVLTTGILAFMLFSEGAKVFSEGYEGYPAWFVNIFGWGMSLSLLVAAFLLSRLKWKDEALTHKKGE
>NC_008309.1|WP_011609867.1|1958895_1959648_+|TIGR03761-family-integrating-conjugative-element-protein
MTTTDLQNQRPGPLRSAPEITINTHHASKLWVGRAAVRNEQGKIIRAGIISMPNCLSLLSQIQRAAANDDPYADDYLLRFETKVLGYRQEMQQLVEKVNYLYSEQIPSAFHMENSVSIEPARYALTFNSQLGYQLIFLFLKFDELACAVMAASHIALMTRSEASDWIEAGAKLIRQCFGLVENYRHSGITRHDAIENNARYKAAIKRMKYELSPEILSGEKRANFAPVIKNTSSSDAEPEQDEFVEIGSA
>NC_008309.1|WP_011609868.1|1959688_1960201_+|DUF3158-family-protein
MKNELIPKSMYRDLAVHTPLNLVLKQFFSEIADIEDCEQLQLSLYQVREYLISQHQDIVKKLRSNDITKALGFRLMQDKASSSGGHFLRWRITTGKTNQSAEKGKLIWKGLIEDKAVSDGIKKRIAQMEKERLVLNMQMSVLNSMMRQLSATIDKLAEIEDLTQGEISSN
>NC_008309.1|WP_011609869.1|1960348_1961146_+|hypothetical-protein
MKFDIDSLLNSPVYEEMRTPLFLRVIKNPPPWAFDIIQPWEDPYRSLMGAFVRRHYWTSQGSINVFQVIGTAHQQYQNRPWMDLLTSGKRMDINLPLQDKKPEYYRATENKSPSMYFNTLDGMNYYIGQDGNHRTCIAKFMFYETGETQLHGVTINHYDIDEMFYQMYCELNDKIKRFGLPVILTAESKLIKREDTAGWMIDYFQPYLIWKEYDEESHHELLEELNFEQAKKKLVEITSRLSLKKQTKDVQKSLLQRFKSYLFKG
>NC_008309.1|WP_011609870.1|1961149_1961359_+|hypothetical-protein
MINVKMTFTVEIDGETIVQHQIKEQAEKRSYFSQERKLTKEIINRMNEFHSERWLDARPWDNFTIDKNP
>NC_008309.1|WP_011609871.1|1961362_1961557_-|hypothetical-protein
MSEKLSITFGEAVIAASNLLSLDLGERNPNDLIKEWNKSPYSQEDFIAIKLNTLAKAIYKICNR
>NC_008309.1|WP_011609872.1|1961744_1962194_+|single-stranded-DNA-binding-protein
MAGINKVIIVGNLGADPEVRTMPNGEAVSNISVATSESWTDKTTGEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNVANSVEGQASYQATNQSAKTMTQQELPPDNFDDDIPF
>NC_008309.1|WP_133098722.1|1962300_1962732_+|hypothetical-protein
MNRYIIMQTSIPMEDLADIEVIYPTDDEHSIQQKITRLYNNMHTQIRNLKLWHQQGGVLTFQQSEQLLHIKPIITAYCSEKNLYRIDEDVTSMEKLNQEFQKYNISINDAIISAKDSTIVDENIITWINVKFTRPNFGVRNTD
>NC_008309.1|WP_011609874.1|1962694_1963465_-|hypothetical-protein
MQQVIHPHTGKLMTVEQYMQQYPNALLNNPNYQPPLMICPHCSNQNMVLRARSSISVPPYFAHPRNFGYCPSQENREGIYRGYRIQNPDPNNAEILRDHFKDYWRHYFKKLRQLVPYLRKEEFTRLIDIANEERIWEYRNVEPYHIPYLLVTLADFPIQKPDVYYKTEYCRKLYFRYWFNTHHNNYESIFENIREVSLCRASYKLDGRERMPIPERLMKTLRINVDNDLLQQDIEDISLSVENWVNRYFELRNWGV
>NC_008309.1|WP_011609875.1|1963577_1964057_+|hypothetical-protein
MYNLRYPLFLASALLITGCAELSALNQKVGDWAGEINRTLNADKQQFSDTLTSKRDIDTLYVRIKRNVGFETMEEMLKCDPESNKNCAWKKAAIAEGGYVHEKTPGVYYRMADSFGNEGRYYVAVTLEKEGKNTLISWRVKGSQDFANQIKADILKAAK
>NC_008309.1|WP_011609876.1|1964536_1965055_+|hypothetical-protein
MIYLISKYTGIYISKSFAYSLLNDYFDSKAYLYPGSTLINIPFMLMYFMRANSLFYRRIDLKSRLAQTLENCREIVINNGKICNNIDCYQTLEFYFIAHETKLNQHTLLETLLFQVMLNNKLIYEDKLKLDPKYIENIIHFDQNKLSEKIRESNKVLLGIAKEVAQEKGFTF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

568710 : 576051

Burkholderia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011608690.1\|568710_570621_+	DNA primase	Q7M2A8	Enterobacteria_phage	1.4e-48	31.3
WP_041604501.1\|571166_571433_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	2.7e-11	43.5
WP_011608692.1\|571468_571864_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	5.6e-05	34.5
WP_011608693.1\|572002_572296_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	4.0e-08	33.8
WP_011608694.1\|572308_572896_+	SocA family protein	A0A139ZPG5	Marinitoga_camini_virus	5.0e-10	29.7
WP_011608695.1\|572888_573335_+	hypothetical protein	NA	NA	NA	NA
WP_011608696.1\|573578_573782_+	hypothetical protein	NA	NA	NA	NA
WP_157856871.1\|574112_574274_+	hypothetical protein	NA	NA	NA	NA
WP_011608697.1\|574742_575204_-	hypothetical protein	NA	NA	NA	NA
WP_011608698.1\|575340_576051_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	2.0e-61	57.1

DBSCAN-SWA_2

586301 : 593221

Escherichia_phage(33.33%)

integrase

attL 589834:589893|attR 591734:592231

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011608709.1\|586301_587930_+	CTP synthase (glutamine hydrolyzing)	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.6e-152	50.0
WP_101812539.1\|587977_589414_-	acyltransferase	C6ZR20	Salmonella_phage	6.1e-17	29.3
589834:589893	attL	NA	NA	NA	NA
WP_041604082.1\|589862_590333_+	restriction endonuclease	NA	NA	NA	NA
WP_011608712.1\|590354_591281_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	2.8e-79	48.7
WP_011608713.1\|591293_591845_-	type I restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.4e-06	26.0
WP_011608714.1\|592008_592530_-	hypothetical protein	Q71TB7	Escherichia_phage	3.1e-19	34.0
591734:592231	attR	NA	NA	NA	NA
WP_011608715.1\|592522_593221_-	DUF3800 domain-containing protein	Q71TB8	Escherichia_phage	5.0e-65	53.3

DBSCAN-SWA_3

679641 : 686390

Caulobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011608790.1\|679641_680220_+	TerD family protein	K4JRX3	Caulobacter_phage	7.4e-30	38.5
WP_041604513.1\|680393_680969_+	TerD family protein	K4JRX3	Caulobacter_phage	9.0e-28	39.2
WP_011608792.1\|680978_681560_+	TerD family protein	K4JRX3	Caulobacter_phage	1.1e-12	30.9
WP_011608793.1\|682437_683502_-	glycosyltransferase family 8 protein	A0ZYL4	Archaeal_BJ1_virus	1.7e-08	22.5
WP_011608794.1\|683678_684155_-	lipooligosaccharide biosynthesis protein	NA	NA	NA	NA
WP_011608795.1\|684276_685170_+	glycosyltransferase family 25 protein	A0A1D8KNF8	Synechococcus_phage	1.8e-11	31.2
WP_011608796.1\|685340_686390_-	ferric ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.0e-34	38.5

DBSCAN-SWA_4

1526267 : 1597503

Mannheimia_phage(28.57%)

terminase,transposase,integrase,capsid

attL 1517451:1517467|attR 1530070:1530086

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1517451:1517467	attL	NA	NA	NA	NA
WP_011609488.1\|1526267_1526666_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	4.9e-17	49.1
WP_011609489.1\|1526740_1526947_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_011609490.1\|1527310_1528012_-	hypothetical protein	NA	NA	NA	NA
WP_011609491.1\|1528093_1529350_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.6e-82	40.4
WP_011609492.1\|1530176_1530716_-	hypothetical protein	NA	NA	NA	NA
1530070:1530086	attR	NA	NA	NA	NA
WP_011609493.1\|1531120_1532470_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_011609494.1\|1532663_1533491_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_011609495.1\|1533631_1534258_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_011609496.1\|1534359_1535601_+	uracil permease	NA	NA	NA	NA
WP_011609497.1\|1535687_1536383_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_011609498.1\|1536500_1536824_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.3e-19	49.0
WP_011609499.1\|1536988_1538098_-	methionine biosynthesis PLP-dependent protein	A0A1V0SL56	Klosneuvirus	6.2e-17	24.7
WP_041604317.1\|1538807_1539662_+	ParA family protein	NA	NA	NA	NA
WP_011609501.1\|1539654_1541031_+	replicative DNA helicase	A0A077SK18	Escherichia_phage	8.6e-93	45.0
WP_011609502.1\|1541020_1542727_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_011609503.1\|1543109_1543763_+	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_011609504.1\|1543826_1544285_+	methylglyoxal synthase	NA	NA	NA	NA
WP_011609505.1\|1544309_1546475_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_011609506.1\|1546476_1546983_-	endonuclease SmrB	NA	NA	NA	NA
WP_011609507.1\|1547067_1548021_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_011609508.1\|1548091_1549144_-	AI-2E family transporter	NA	NA	NA	NA
WP_011609509.1\|1549143_1549482_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_011609510.1\|1549524_1550109_-	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_011609511.1\|1550169_1550805_-	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.6e-22	38.5
WP_011609512.1\|1550805_1551975_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_011609513.1\|1552057_1552846_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_011609514.1\|1552859_1553315_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_041604320.1\|1553398_1554286_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_011609516.1\|1554395_1555730_-	argininosuccinate synthase	A0A140XAJ5	Dickeya_phage	3.1e-55	80.2
WP_011609517.1\|1555822_1556653_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_041604322.1\|1556719_1557580_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	3.9e-51	36.0
WP_011609519.1\|1558146_1558773_-	hypothetical protein	NA	NA	NA	NA
WP_011609520.1\|1558772_1559306_-	hypothetical protein	NA	NA	NA	NA
WP_101812544.1\|1559324_1560533_-	hypothetical protein	NA	NA	NA	NA
WP_011609522.1\|1560644_1560962_-	hypothetical protein	NA	NA	NA	NA
WP_049752237.1\|1560978_1562187_-	hypothetical protein	NA	NA	NA	NA
WP_011609524.1\|1562321_1562606_-	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	7.0e-26	68.3
WP_041604562.1\|1562581_1562890_-	hypothetical protein	NA	NA	NA	NA
WP_011609527.1\|1565541_1567521_-	hypothetical protein	NA	NA	NA	NA
WP_011609528.1\|1567584_1568034_-	hypothetical protein	NA	NA	NA	NA
WP_157665517.1\|1568011_1568185_-	hypothetical protein	NA	NA	NA	NA
WP_011609529.1\|1568243_1568633_-	hypothetical protein	NA	NA	NA	NA
WP_011609530.1\|1568629_1569076_-	SAP domain-containing protein	NA	NA	NA	NA
WP_011609531.1\|1569137_1570133_-\|capsid	N4-gp56 family major capsid protein	NA	NA	NA	NA
WP_011609532.1\|1570158_1571022_-	hypothetical protein	NA	NA	NA	NA
WP_011609533.1\|1571099_1571282_-	hypothetical protein	NA	NA	NA	NA
WP_011609534.1\|1571379_1571682_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_101812534.1\|1580281_1580671_-	hypothetical protein	A0A1B1P9D9	Acinetobacter_phage	1.9e-13	38.7
WP_157856875.1\|1580685_1580832_-	hypothetical protein	NA	NA	NA	NA
WP_080502959.1\|1580931_1581096_-	photosystem I reaction center subunit PsaK	NA	NA	NA	NA
WP_041604325.1\|1581206_1583384_-	hypothetical protein	S4S2T1	Puniceispirillum_phage	2.0e-43	25.9
WP_011609539.1\|1583385_1584933_-	hypothetical protein	A0A1B1IVN4	uncultured_Mediterranean_phage	6.4e-97	42.0
WP_011609540.1\|1584932_1585628_-\|terminase	terminase	NA	NA	NA	NA
WP_041604566.1\|1585652_1585796_-	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	9.9e-13	69.8
WP_011609541.1\|1585824_1586151_-	DUF2570 family protein	NA	NA	NA	NA
WP_011609542.1\|1586123_1586660_-	lysozyme	Q19UR6	Mannheimia_phage	5.2e-46	50.3
WP_011609543.1\|1586652_1586889_-	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.2e-23	71.8
WP_041604327.1\|1587176_1588313_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.0e-120	56.4
WP_011609545.1\|1588359_1588776_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-48	64.2
WP_011609547.1\|1589384_1589789_-	hypothetical protein	NA	NA	NA	NA
WP_012341702.1\|1589778_1590357_-	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	1.6e-45	52.4
WP_011609549.1\|1590547_1590733_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.1e-14	66.7
WP_011609550.1\|1590755_1591169_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	2.7e-34	55.6
WP_011609551.1\|1591255_1592215_-	hypothetical protein	Q8HA04	Enterobacteria_phage	1.7e-87	59.4
WP_011609552.1\|1592578_1593193_+	hypothetical protein	B6SD57	Bacteriophage	8.1e-27	52.1
WP_011609553.1\|1593244_1593697_-	DUF1367 family protein	A0A0M3LPN2	Mannheimia_phage	2.4e-68	81.3
WP_011609554.1\|1593709_1594243_-	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	2.9e-65	64.3
WP_011609555.1\|1594257_1594950_-	replication protein P	A0A077KCC8	Edwardsiella_phage	5.5e-24	35.4
WP_011609557.1\|1595734_1595983_-	hypothetical protein	A0A0M3LR73	Mannheimia_phage	8.3e-23	75.0
WP_011609558.1\|1596025_1596478_-	hypothetical protein	NA	NA	NA	NA
WP_011609559.1\|1596522_1596729_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	4.9e-13	50.0
WP_011609560.1\|1596867_1597503_+	LexA family transcriptional repressor	G9L676	Escherichia_phage	7.8e-41	45.6

DBSCAN-SWA_5

1601520 : 1612962

Mannheimia_phage(33.33%)