CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_006840	Aliivibrio fischeri ES114 chromosome I, complete sequence	0 crisprs	csa3,DEDDh,DinG,RT,cas3,csx1	3
NC_006842	Aliivibrio fischeri ES114 plasmid pES100, complete sequence	0 crisprs	NA	0
NC_006841	Aliivibrio fischeri ES114 chromosome II, complete sequence	0 crisprs	DEDDh,cas3,csa3	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

674577 : 681982

Faustovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047863694.1\|674577_675792_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	1.1e-30	29.7
WP_005417914.1\|675826_676210_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	3.5e-52	75.8
WP_005417916.1\|676334_676658_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.1e-22	45.8
WP_011261361.1\|676673_677189_+	co-chaperone HscB	NA	NA	NA	NA
WP_011261362.1\|677227_679078_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.1e-106	39.0
WP_005417920.1\|679080_679419_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005417922.1\|679541_679742_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_011261363.1\|679972_681259_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	4.6e-32	32.8
WP_005417926.1\|681547_681982_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	8.8e-20	37.7

DBSCAN-SWA_2

2185129 : 2270868

Vibrio_phage(28.12%)

plate,head,tail,tRNA,capsid,protease,integrase,portal,terminase

attL 2237773:2237800|attR 2270967:2270994

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011262429.1\|2185129_2186488_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_011262430.1\|2186490_2187693_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_047863483.1\|2187799_2188639_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_005420551.1\|2188642_2189416_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	3.1e-23	42.9
WP_011262432.1\|2189537_2190095_-	ribosome recycling factor	NA	NA	NA	NA
WP_011262433.1\|2190130_2190862_-	UMP kinase	NA	NA	NA	NA
WP_011262434.1\|2191014_2191860_-	elongation factor Ts	NA	NA	NA	NA
WP_005420558.1\|2191993_2192722_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_005420560.1\|2193081_2193909_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_011262435.1\|2193967_2196589_+	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_005420564.1\|2196728_2197109_+	DUF3461 family protein	NA	NA	NA	NA
WP_011262436.1\|2197177_2198128_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.6e-53	46.8
WP_011262437.1\|2198140_2199997_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_011262438.1\|2200050_2200386_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.2e-10	40.2
WP_005420569.1\|2200480_2201608_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-90	47.2
WP_011262439.1\|2201821_2202874_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_005420573.1\|2203106_2203550_+	CBS domain-containing protein	NA	NA	NA	NA
WP_005420574.1\|2203630_2204959_-	isocitrate lyase	NA	NA	NA	NA
WP_011262440.1\|2204973_2206578_-	malate synthase A	NA	NA	NA	NA
WP_011262441.1\|2207152_2208052_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_005420579.1\|2208197_2208806_+	peroxiredoxin C	NA	NA	NA	NA
WP_011262442.1\|2209086_2209830_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_011262443.1\|2209886_2210249_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA
WP_011262444.1\|2210305_2210941_-	porin family protein	NA	NA	NA	NA
WP_011262445.1\|2211248_2212178_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047863481.1\|2212711_2213206_+	hypothetical protein	NA	NA	NA	NA
WP_011262447.1\|2213452_2214013_-	hypothetical protein	NA	NA	NA	NA
WP_011262448.1\|2214201_2214900_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_005420610.1\|2214939_2215758_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.0e-16	34.8
WP_011262449.1\|2215762_2217298_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_011262450.1\|2217308_2219516_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_193332949.1\|2219625_2220606_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA
WP_011262452.1\|2220629_2221925_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	3.4e-27	28.0
WP_005420619.1\|2221951_2222644_-	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	1.1e-35	36.6
WP_026029289.1\|2222858_2223770_+	recombination-associated protein RdgC	A0A2I7RNT5	Vibrio_phage	6.7e-102	59.8
WP_011262453.1\|2223924_2225313_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	4.1e-159	74.1
WP_005420626.1\|2225316_2225571_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.5e-19	52.8
WP_011262454.1\|2225652_2226747_-	DUF3541 domain-containing protein	NA	NA	NA	NA
WP_011262455.1\|2226924_2228064_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	9.8e-18	25.4
WP_011262456.1\|2228444_2230349_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.4e-141	49.3
WP_047863480.1\|2230569_2231517_-	hypothetical protein	NA	NA	NA	NA
WP_011262458.1\|2231757_2232342_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_026029291.1\|2232519_2233404_+	NAD(+) kinase	NA	NA	NA	NA
WP_005420633.1\|2233521_2235189_+	DNA repair protein RecN	NA	NA	NA	NA
WP_011262460.1\|2235404_2235761_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_011262461.1\|2235841_2236153_-	RnfH family protein	NA	NA	NA	NA
WP_005420637.1\|2236139_2236577_-	ubiquinone-binding protein	NA	NA	NA	NA
WP_011262462.1\|2236873_2237359_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.9e-24	43.0
2237773:2237800	attL	NA	NA	NA	NA
WP_011262463.1\|2237985_2238534_-	Bro-N domain-containing protein	Q8HA44	Vibrio_phage	8.5e-28	57.3
WP_011262464.1\|2239093_2240980_-	hypothetical protein	NA	NA	NA	NA
WP_155403963.1\|2241015_2241117_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_011262465.1\|2241155_2241425_-\|tail	phage tail assembly protein	A0A219YA51	Aeromonas_phage	2.4e-07	36.1
WP_011262466.1\|2241417_2242125_-	hypothetical protein	NA	NA	NA	NA
WP_011262467.1\|2242141_2242507_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_011262468.1\|2242532_2243666_-\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8W623	Enterobacteria_phage	1.2e-44	29.8
WP_011262469.1\|2243665_2243833_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_011262470.1\|2243833_2244355_-	phage virion morphogenesis protein	NA	NA	NA	NA
WP_011262471.1\|2244345_2244819_-\|tail	phage tail protein	NA	NA	NA	NA
WP_011262472.1\|2244818_2245268_-\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_011262473.1\|2245379_2246414_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	3.9e-66	41.2
WP_011262474.1\|2246476_2247289_-\|capsid	GPO family capsid scaffolding protein	Q94MZ5	Haemophilus_virus	1.4e-21	42.0
WP_193332950.1\|2247429_2249187_+\|terminase	terminase	A0A077K8Q7	Ralstonia_phage	1.2e-110	39.8
WP_011262476.1\|2249228_2250170_+\|portal	phage portal protein	Q19UT6	Mannheimia_phage	5.0e-60	40.9
WP_011262477.1\|2250316_2250667_-	hypothetical protein	NA	NA	NA	NA
WP_047863515.1\|2250668_2250827_-	hypothetical protein	NA	NA	NA	NA
WP_011262479.1\|2250874_2251264_-	peptidase	A0A1B1IPM8	uncultured_Mediterranean_phage	3.7e-41	60.2
WP_011262480.1\|2251265_2251499_-	hypothetical protein	NA	NA	NA	NA
WP_011262481.1\|2251634_2252090_-	hypothetical protein	NA	NA	NA	NA
WP_011262482.1\|2252089_2253436_-\|tail	tail fiber protein	A0A2I7QXA3	Vibrio_phage	1.1e-07	32.6
WP_011262485.1\|2253886_2254939_-\|plate	baseplate J/gp47 family protein	J9QE72	Clostridium_phage	9.7e-12	31.8
WP_011262486.1\|2254935_2255322_-	phage GP46 family protein	NA	NA	NA	NA
WP_011262487.1\|2255318_2255516_-	hypothetical protein	A0A2I7RNJ8	Vibrio_phage	3.6e-13	67.7
WP_011262488.1\|2255518_2256028_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_011262489.1\|2256020_2256965_-\|tail	tail protein	A0A2P9JZK3	Alteromonadaceae_phage	1.6e-05	24.9
WP_011262490.1\|2256961_2258197_-	DNA circularization N-terminal domain-containing protein	NA	NA	NA	NA
WP_047863478.1\|2258548_2258791_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_011262491.1\|2258759_2259173_-	hypothetical protein	NA	NA	NA	NA
WP_011262492.1\|2259174_2260089_-	hypothetical protein	NA	NA	NA	NA
WP_011262493.1\|2260174_2260729_-	3'-5' exoribonuclease	A0A2I7RDR9	Vibrio_phage	9.5e-59	57.8
WP_011262494.1\|2260739_2260946_-	hypothetical protein	NA	NA	NA	NA
WP_011262495.1\|2260955_2263076_-	hypothetical protein	A0A2I7RNF8	Vibrio_phage	5.0e-185	50.4
WP_011262496.1\|2263104_2263440_-	hypothetical protein	NA	NA	NA	NA
WP_047863477.1\|2263542_2263755_-	hypothetical protein	NA	NA	NA	NA
WP_011262497.1\|2263751_2263982_-	hypothetical protein	A0A2I7RNG5	Vibrio_phage	2.6e-18	53.9
WP_011262498.1\|2263985_2264213_-	hypothetical protein	NA	NA	NA	NA
WP_011262500.1\|2264343_2264745_-	hypothetical protein	R9TRR4	Vibrio_phage	2.4e-35	53.4
WP_011262501.1\|2264741_2265212_-	hypothetical protein	NA	NA	NA	NA
WP_011262502.1\|2265222_2265756_-	phage regulatory CII family protein	A0A2I7RNI1	Vibrio_phage	9.2e-35	42.5
WP_047863476.1\|2265783_2265993_-	hypothetical protein	NA	NA	NA	NA
WP_011262504.1\|2266002_2266188_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011262505.1\|2266339_2266987_+	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	3.1e-37	41.1
WP_011262506.1\|2267021_2267303_+	hypothetical protein	NA	NA	NA	NA
WP_011262507.1\|2267314_2267656_+	hypothetical protein	NA	NA	NA	NA
WP_011262508.1\|2267702_2268884_+	hypothetical protein	NA	NA	NA	NA
WP_011262509.1\|2268870_2269221_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_011262510.1\|2269217_2269823_+	hypothetical protein	NA	NA	NA	NA
WP_011262511.1\|2269890_2270868_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.8e-90	51.5
2270967:2270994	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2303270 : 2312438

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011262534.1\|2303270_2304236_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	2.6e-35	34.9
WP_047863473.1\|2304290_2305280_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	2.2e-05	34.7
WP_011262536.1\|2305293_2305920_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.7e-35	50.3
WP_011262537.1\|2305919_2306693_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.9e-65	51.6
WP_011262538.1\|2306700_2307756_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_011262539.1\|2307767_2308244_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011262540.1\|2308243_2308960_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	3.2e-06	24.2
WP_005420699.1\|2308963_2309248_-	cell division protein FtsB	NA	NA	NA	NA
WP_011262541.1\|2309420_2310719_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	8.5e-135	59.9
WP_011262542.1\|2310797_2312438_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.4e-153	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_006841

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

196617 : 205008

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011263071.1\|196617_197499_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.6e-28	32.2
WP_011263072.1\|197649_198174_-	DUF3087 domain-containing protein	NA	NA	NA	NA
WP_011263073.1\|198390_199311_-	permease	NA	NA	NA	NA
WP_011263074.1\|199418_199730_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011263075.1\|199753_200227_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.2e-31	48.7
WP_011263076.1\|200244_201585_-	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	2.7e-19	27.0
WP_011263077.1\|201589_202270_-	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	5.6e-29	32.7
WP_047863641.1\|202373_202754_-	DUF3316 domain-containing protein	NA	NA	NA	NA
WP_005421996.1\|202948_203614_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-22	33.3
WP_011263079.1\|203619_205008_+	sensor histidine kinase	W8CYF6	Bacillus_phage	7.5e-20	26.2

DBSCAN-SWA_2

656428 : 665022

Vibrio_phage(71.43%)

integrase

attL 648028:648044|attR 661568:661584

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
648028:648044	attL	NA	NA	NA	NA
WP_011263422.1\|656428_657343_-\|integrase	tyrosine-type recombinase/integrase	Q5XLQ5	Enterobacteria_phage	8.4e-12	25.7
WP_011263423.1\|657486_657837_+	DUF3319 domain-containing protein	NA	NA	NA	NA
WP_005422748.1\|657876_658188_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_011263425.1\|659900_661085_-	zona occludens toxin	A0A0F6SIJ2	Vibrio_phage	2.6e-146	63.4
WP_011263426.1\|661081_661366_-	DUF2523 domain-containing protein	A0A0F6YNQ7	Vibrio_phage	1.6e-25	57.4
WP_011263427.1\|661372_662578_-	hypothetical protein	A0A0F6WBG7	Vibrio_phage	1.3e-15	47.9
661568:661584	attR	NA	NA	NA	NA
WP_011263428.1\|662693_662939_-	DNA-binding protein	NA	NA	NA	NA
WP_011263429.1\|663081_663408_-	RstB2 protein	A0A0N9HE73	Vibrio_phage	1.2e-21	46.2
WP_011263430.1\|663410_664565_-	replication initiation factor domain-containing protein	U5TQR3	Satellite_phage	1.4e-128	59.4
WP_011263431.1\|664686_665022_+	helix-turn-helix transcriptional regulator	A0A0N9HJE7	Vibrio_phage	1.4e-20	44.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_006840

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_006841

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection