CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_003912	Campylobacter jejuni RM1221, complete sequence	2 crisprs	DEDDh,WYL,cas2,cas1,csa3	0	7	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_003912_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003912_1

1493858-1493937

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003912_1

>merge|NC_003912|1|1493858-1493937|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NC_003912|1|1|1493858-1493937|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003912.7\|WP_011049975.1\|1490621_1491824_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_003912.7\|WP_002923484.1\|1489125_1489950_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NC_003912.7\|WP_002859678.1\|1489953_1490625_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_003912.7\|WP_014517288.1\|1485859_1487632_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NC_003912.7\|WP_002869578.1\|1494239_1495610_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NC_003912.7\|WP_002780440.1\|1496615_1497035_-\|hypothetical-protein	unknown	unknown	unknown
NC_003912.7\|WP_011049974.1\|1487628_1489122_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NC_003912.7\|WP_002779147.1\|1485570_1485795_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NC_003912.7\|WP_002780449.1\|1492884_1493430_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NC_003912.7\|WP_002780438.1\|1497031_1498393_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_003912.7\|WP_011049978.1\|1502814_1504734_-\|hypothetical-protein	unknown	unknown	unknown
NC_003912.7\|WP_002867277.1\|1506654_1508136_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|133026
NC_003912.7\|WP_002780441.1\|1496267_1496615_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NC_003912.7\|WP_002867280.1\|1500764_1502837_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NC_003912.7\|WP_002868488.1\|1495731_1496268_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NC_003912.7\|WP_014517287.1\|1485791_1485905_+\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|223447
NC_003912.7\|WP_002874401.1\|1493457_1493784_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NC_003912.7\|WP_011049976.1\|1491826_1492825_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_003912.7\|WP_002780436.1\|1498389_1499511_-\|hypothetical-protein	unknown	unknown	unknown
NC_003912.7\|WP_011049977.1\|1499583_1500768_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092

Protein	Function_ID	Function_description	E-value
NC_003912.7\|WP_011049975.1\|1490621_1491824_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_003912.7\|WP_002923484.1\|1489125_1489950_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_003912.7\|WP_002859678.1\|1489953_1490625_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	4.87196e-87
NC_003912.7\|WP_014517288.1\|1485859_1487632_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NC_003912.7\|WP_002869578.1\|1494239_1495610_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_003912.7\|WP_011049977.1\|1499583_1500768_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_003912.7\|WP_011049974.1\|1487628_1489122_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.82881e-155
NC_003912.7\|WP_002779147.1\|1485570_1485795_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NC_003912.7\|WP_002780449.1\|1492884_1493430_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.69536e-59
NC_003912.7\|WP_002780438.1\|1497031_1498393_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.85034e-79
NC_003912.7\|WP_002867277.1\|1506654_1508136_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|133026	cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	3.14539e-64
NC_003912.7\|WP_002780441.1\|1496267_1496615_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.95652e-40
NC_003912.7\|WP_002867280.1\|1500764_1502837_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_003912.7\|WP_002868488.1\|1495731_1496268_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	4.17927e-91
NC_003912.7\|WP_014517287.1\|1485791_1485905_+\|50S-ribosome-binding-GTPase	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	2.30604e-12
NC_003912.7\|WP_002874401.1\|1493457_1493784_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.56366e-37
NC_003912.7\|WP_011049976.1\|1491826_1492825_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.98861e-166

>NC_003912.7|WP_002874401.1|1493457_1493784_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGEKHALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NC_003912.7|WP_002780449.1|1492884_1493430_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNTNEVCEEIKDEVKKYYEKLQKN
>NC_003912.7|WP_011049976.1|1491826_1492825_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNDKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKSQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVVSDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NC_003912.7|WP_011049975.1|1490621_1491824_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFIAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPTCSQDAPMKFVPVQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NC_003912.7|WP_002859678.1|1489953_1490625_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NC_003912.7|WP_002923484.1|1489125_1489950_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRSLLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NC_003912.7|WP_011049974.1|1487628_1489122_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRADLPSFDELVFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQNFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NC_003912.7|WP_014517288.1|1485859_1487632_+|ferrous-iron-transport-protein-B
MQSQYESRKFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIINVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCEARLPVYVLFIGTFYPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKNEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NC_003912.7|WP_014517287.1|1485791_1485905_+|50S-ribosome-binding-GTPase
MKKIKIALVGQPNVGKSLLINALCKANMKVGNLAELL
>NC_003912.7|WP_002779147.1|1485570_1485795_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NC_003912.7|WP_002869578.1|1494239_1495610_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLAPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLNDDIEENLEVEKYDILSLYVKFICEQFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIRALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFDDIKARFKN
>NC_003912.7|WP_002868488.1|1495731_1496268_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKTDKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NC_003912.7|WP_002780441.1|1496267_1496615_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAVV
>NC_003912.7|WP_002780440.1|1496615_1497035_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK
>NC_003912.7|WP_002780438.1|1497031_1498393_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDCKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGVIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NC_003912.7|WP_002780436.1|1498389_1499511_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHVFNIKVDLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NC_003912.7|WP_011049977.1|1499583_1500768_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIDETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NC_003912.7|WP_002867280.1|1500764_1502837_-|capsular-polysaccharide-biosynthesis-protein
MIKERFLSSFKISREYSYLYIFCYKFFSRIKDSDVFVGWGRKKSGLKAMNLAKKHKARFILLEDGFIRSLNLGVENSPSFSIVKDDIGIYYDATVPSKLENLLNTYEFKDKETKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITENFNPVVLLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHENLKINAKTGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKDYFSKKYIKLVIDFKTFMLRKIRRFYEFLAKK
>NC_003912.7|WP_011049978.1|1502814_1504734_-|hypothetical-protein
MIKEKEKEIFSIIERNLQLWNFDLVESIYYTNYKLSVNIETKFYNFLYLTGNIGKYILEEERLNDEILYTRKILLNGNINYQNIKDNLYERVSKDILSCYLLNKNFYFCDTNDSIDNLLDLYKNYIHGSSNIITRNYFIATLIRFCVILGKQELFYIKEGFDLRYYLLQKMYDINTSGSKIYHSLFIDELQDQLKNGNIKSEVKFAICMYGMLRGDWKGTLEKNIKIAKEQLNADIFLFTWSKKQDWQNITTGGDCWVDRKLAKDFFQESPKEILKTSDLKKNMPNVFSRLNHDIFSKYNYSELKNLIEYYENFRGLLVEDQQKVQQDESLSSNIEFMYYAIYKSFKILEKYEESNNIKYDYIIHMRVDSEILIEGCLKNEIIKLRSNNIYDLKTLAGNGVGNVVGSRNVINIYSSLYVHRKFYKNLMIANTKDPHEMFFKWLSFNGIYSIKPNFKIEHRYTKAQNGYIMPDISKELYLDLLNLRDKFDTKKLDKFIYFFQKVTKKYCKEKLTDSVYFSAKSRIKNHLAYQFGLTMIQYSRNILGYVKMPFILFQTFRQYQNKKKEYYERISENPKFILPKIKEYADYQEAIKLKESITYRLGQALIQANKNWYGGGYIKLLFEIRRLKKEYYDKRTIS
>NC_003912.7|WP_002867277.1|1506654_1508136_-|NTP-transferase-domain-containing-protein
MNIIIPATGIGKRFKEAGYKDLKPFIKVIEDKVILDYVVECFDVRNDVYYFIAQECEKNKFEDFILSRKIHAKVIVYKGGKLGPAGSLYGVASQLQDILDEEVIISYCDFGQEWNYKDFLQFTQENLDVQAIIPCYTGYHPHLLPLENVYAACKMYDNTYKAYKVIEKYNSKNKFEEYYSSGIYYFRTLKLAIEAIKKQIKARDMVFGEYYISMTNNYLENVLCYPFIEKFYQFGTPKDFEYAKKKLNSQDVNNEKIKIQNTIILSAGRGERFLNLNFNQPKPFLPLGKTSIIENIIDTLKDVETKIICVGAQDHKKYWESIKQEVRFVKPNKIGAAYSYKESCGNLSGDVLILPCDLIAKHITKEFIRLQKEYEVIVFVTHASKYNVNNSHYFTWVDGENNKIDNIFVKNRPNDANLVMIGSFYFKANSLLLEYIDKIFQEDIKTNGEFYIDNVFELLIKKHKIGYMIVDNYFSYGTPEEYLENQYWFKVKS

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Crispr_ID: NC_003912_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003912_2

1594102-1594336

Unclear

Consensus_repeat	Method
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

3 spacers

cas2,cas1

The CRISPR arrays of NC_003912_2

>merge|NC_003912|2|1594102-1594336|CRT,CRISPRCasFinder,PILER-CR
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTCCATTCTCATGAAATATTTAGCCATTATTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATGGTAGTAGAATTATCTTTGCTGGTATTAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTCTAAAATTGTTTCATTTTCATTAGTAGCTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_003912|2|1|1594102-1594336|CRT
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCCATTCTCATGAAATATTTAGCCATTAT
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GGTAGTAGAATTATCTTTGCTGGTATTAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCTAAAATTGTTTCATTTTCATTAGTAGC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_003912|2|2|1594104-1594336|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCCATTCTCATGAAATATTTAGCCATTATTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GGTAGTAGAATTATCTTTGCTGGTATTAATG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCTAAAATTGTTTCATTTTCATTAGTAGCTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_003912|2|1|1594168-1594336|PILER-CR
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	GGTAGTAGAATTATCTTTGCTGGTATTAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TCTAAAATTGTTTCATTTTCATTAGTAGC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003912.7\|WP_002860681.1\|1606368_1607193_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|273443
NC_003912.7\|WP_002912466.1\|1592792_1593983_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NC_003912.7\|WP_011049993.1\|1584908_1587713_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NC_003912.7\|WP_002851546.1\|1604578_1605028_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_003912.7\|WP_002867225.1\|1588896_1590045_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NC_003912.7\|WP_002867228.1\|1584270_1584912_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NC_003912.7\|WP_002867217.1\|1603476_1604514_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_003912.7\|WP_002855377.1\|1602748_1603480_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NC_003912.7\|WP_002803269.1\|1587712_1587904_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NC_003912.7\|WP_002869803.1\|1590168_1591710_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NC_003912.7\|WP_002867219.1\|1600372_1601362_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NC_003912.7\|WP_002869804.1\|1592373_1592790_+\|GyrI-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|214874
NC_003912.7\|WP_002851502.1\|1587878_1588592_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NC_003912.7\|WP_002860686.1\|1601422_1602028_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_003912.7\|WP_002860682.1\|1605154_1606375_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NC_003912.7\|WP_002867223.1\|1591933_1592377_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NC_003912.7\|WP_002799307.1\|1594904_1595795_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_003912.7\|WP_002867218.1\|1602024_1602774_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_003912.7\|WP_002779488.1\|1591711_1591933_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NC_003912.7\|WP_171770385.1\|1594480_1594894_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
NC_003912.7\|WP_002860681.1\|1606368_1607193_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|273443	TIGR01099, UTP--glucose-1-phosphate_uridylyltransferase, UTP--glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.7372e-162
NC_003912.7\|WP_002912466.1\|1592792_1593983_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	9.65163e-141
NC_003912.7\|WP_011049993.1\|1584908_1587713_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_003912.7\|WP_002851546.1\|1604578_1605028_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NC_003912.7\|WP_002867225.1\|1588896_1590045_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_003912.7\|WP_002867228.1\|1584270_1584912_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	5.50952e-57
NC_003912.7\|WP_002867217.1\|1603476_1604514_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.91517e-32
NC_003912.7\|WP_002855377.1\|1602748_1603480_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.57422e-98
NC_003912.7\|WP_002803269.1\|1587712_1587904_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00537271
NC_003912.7\|WP_002869803.1\|1590168_1591710_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	7.67465e-120
NC_003912.7\|WP_002867219.1\|1600372_1601362_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_003912.7\|WP_002869804.1\|1592373_1592790_+\|GyrI-like-domain-containing-protein	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	2.37716e-11
NC_003912.7\|WP_002851502.1\|1587878_1588592_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NC_003912.7\|WP_002860686.1\|1601422_1602028_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	7.32317e-69
NC_003912.7\|WP_002860682.1\|1605154_1606375_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NC_003912.7\|WP_002867223.1\|1591933_1592377_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	2.25273e-43
NC_003912.7\|WP_002799307.1\|1594904_1595795_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.11594e-122
NC_003912.7\|WP_002867218.1\|1602024_1602774_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.07556e-92
NC_003912.7\|WP_002779488.1\|1591711_1591933_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NC_003912.7\|WP_171770385.1\|1594480_1594894_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.3054e-55

>NC_003912.7|WP_002912466.1|1592792_1593983_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVAPKECEILENESLVDIIFMP
>NC_003912.7|WP_002869804.1|1592373_1592790_+|GyrI-like-domain-containing-protein
MIQEIEEFSIYGVSVKTDEELESDLNSSLIFPLWKKFHSIFGAPDEIYSVYYDYKNTHKLEYKICVGMKNPHEKGEKICIKGGKYMLFEDSGKPEIIAPKLWQNINEFFKNSSLQRKFDTDFEFYTTNKTQIYISMKE
>NC_003912.7|WP_002867223.1|1591933_1592377_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLK
>NC_003912.7|WP_002779488.1|1591711_1591933_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NC_003912.7|WP_002869803.1|1590168_1591710_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFRLESAYYDRDKMMVEEEPNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NC_003912.7|WP_002867225.1|1588896_1590045_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NC_003912.7|WP_002851502.1|1587878_1588592_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NC_003912.7|WP_002803269.1|1587712_1587904_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWEKYYIKAE
>NC_003912.7|WP_011049993.1|1584908_1587713_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQKGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NC_003912.7|WP_002867228.1|1584270_1584912_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIRGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NC_003912.7|WP_171770385.1|1594480_1594894_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF
>NC_003912.7|WP_002799307.1|1594904_1595795_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSISSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKYNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NC_003912.7|WP_002867219.1|1600372_1601362_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEDKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYIIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NC_003912.7|WP_002860686.1|1601422_1602028_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLDSQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM
>NC_003912.7|WP_002867218.1|1602024_1602774_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NC_003912.7|WP_002855377.1|1602748_1603480_+|glucosaminidase-domain-containing-protein
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NC_003912.7|WP_002867217.1|1603476_1604514_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRTKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>NC_003912.7|WP_002851546.1|1604578_1605028_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NC_003912.7|WP_002860682.1|1605154_1606375_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS
>NC_003912.7|WP_002860681.1|1606368_1607193_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEALEAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQNQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVMEVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILENTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	MN530981	Campylobacter phage DA10, complete genome	21921-21949	0	1.0
NC_003912_2	2.2\|1594205\|29\|NC_003912\|CRT,PILER-CR	1594205-1594233	29	MN530981	Campylobacter phage DA10, complete genome	19770-19798	1	0.966
NC_003912_2	2.5\|1594205\|31\|NC_003912\|CRISPRCasFinder	1594205-1594235	31	MN530981	Campylobacter phage DA10, complete genome	19768-19798	1	0.968
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	MN530981	Campylobacter phage DA10, complete genome	21921-21951	1	0.968
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	AP013857	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S26-C134, * SEQUENCING IN PROGRESS *	9939-9967	5	0.828
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	AP013862	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S45-C148, * SEQUENCING IN PROGRESS *	5460-5488	5	0.828
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	AP014471	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, * SEQUENCING IN PROGRESS *, 8 ordered pieces	14292-14320	5	0.828
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	AP014470	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, * SEQUENCING IN PROGRESS *, 7 ordered pieces	18048-18076	5	0.828
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	AP013858	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S28-C98, * SEQUENCING IN PROGRESS *	5460-5488	5	0.828
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	JX519265	Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence	21009-21037	5	0.828
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	AP013859	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C166, * SEQUENCING IN PROGRESS *	2838-2866	5	0.828
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NC_007392	Spiroplasma citri plasmid pSci6	34900-34928	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP047431	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence	33195-33223	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP046369	Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence	53051-53079	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP046372	Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence	54325-54353	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	13986-14014	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	23344-23372	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP047427	Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence	15255-15283	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP053310	Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence	33004-33032	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP042474	Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence	13512-13540	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	34007-34035	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP016481	Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence	38709-38737	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	107665-107693	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	MN693340	Marine virus AFVG_25M356, complete genome	12621-12649	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	MN830253	Lactobacillus phage JNU_P5, complete genome	30747-30775	6	0.793
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	MG945457	UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome	1654-1682	7	0.759
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	184531-184559	7	0.759
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_LR214984	Mycoplasma cynos strain NCTC10142 plasmid 11	2247-2275	7	0.759
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_LR214984	Mycoplasma cynos strain NCTC10142 plasmid 11	3238-3266	7	0.759
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	693702-693730	7	0.759
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	MK504443	Lactobacillus phage 521B, complete genome	64966-64994	7	0.759
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	MK448734	Streptococcus phage Javan347, complete genome	17945-17973	7	0.759
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NC_049857	Lactococcus phage P1048, complete genome	102543-102571	7	0.759
NC_003912_2	2.4\|1594139\|31\|NC_003912\|CRISPRCasFinder	1594139-1594169	31	MN855705	Bacteriophage sp. isolate 119, complete genome	7622-7652	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NC_007392	Spiroplasma citri plasmid pSci6	34900-34930	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP047431	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence	33195-33225	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP046369	Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence	53051-53081	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP046372	Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence	54323-54353	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	13984-14014	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	23342-23372	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP047427	Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence	15253-15283	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP053310	Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence	33002-33032	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP042474	Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence	13512-13542	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	184529-184559	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP016481	Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence	38707-38737	7	0.774
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	107663-107693	7	0.774
NC_003912_2	2.1\|1594139\|29\|NC_003912\|CRT	1594139-1594167	29	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	46333-46361	8	0.724
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	53392-53420	8	0.724
NC_003912_2	2.3\|1594271\|29\|NC_003912\|CRT,PILER-CR	1594271-1594299	29	LR214966	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12	32979-33007	8	0.724
NC_003912_2	2.5\|1594205\|31\|NC_003912\|CRISPRCasFinder	1594205-1594235	31	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	42566-42596	8	0.742
NC_003912_2	2.5\|1594205\|31\|NC_003912\|CRISPRCasFinder	1594205-1594235	31	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	106942-106972	8	0.742
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	MN693340	Marine virus AFVG_25M356, complete genome	12619-12649	8	0.742
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	MN830253	Lactobacillus phage JNU_P5, complete genome	30745-30775	8	0.742
NC_003912_2	2.4\|1594139\|31\|NC_003912\|CRISPRCasFinder	1594139-1594169	31	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	46333-46363	9	0.71
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	MG945457	UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome	1652-1682	9	0.71
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	53392-53422	9	0.71
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	MK504443	Lactobacillus phage 521B, complete genome	64964-64994	9	0.71
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	MK448734	Streptococcus phage Javan347, complete genome	17943-17973	9	0.71
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	NC_049857	Lactococcus phage P1048, complete genome	102543-102573	9	0.71
NC_003912_2	2.6\|1594271\|31\|NC_003912\|CRISPRCasFinder	1594271-1594301	31	KT997847	Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence	12245-12275	9	0.71
NC_003912_1	1.1\|1493881\|34\|NC_003912\|CRISPRCasFinder	1493881-1493914	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattgtttcattttcattagtagc	Protospacer
*****************************

2. spacer 2.2|1594205|29|NC_003912|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

ggtagtagaattatctttgctggtattaa	CRISPR spacer
ggtagtagaattatctttgctggtatcaa	Protospacer
**************************.**

3. spacer 2.5|1594205|31|NC_003912|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
ggtagtagaattatctttgctggtatcaatg	Protospacer
**************************.****

4. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattgtttcattttcattagtagcta	Protospacer
******************************.

5. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to AP013857 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S26-C134, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

6. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to AP013862 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S45-C148, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

7. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to AP014471 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S43-C77, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

8. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to AP014470 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S36-C90, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

9. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to AP013858 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S28-C98, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

10. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to JX519265 (Uncultured Mediterranean phage MEDS1 group fosmid MedDCM-OCT-S15-C1, complete sequence) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

11. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to AP013859 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15H-MedDCM-OCT-S34-C166, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.828

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatgtttcaatttcatttgcatc	Protospacer
******* ******* ******* *.* *

12. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NC_007392 (Spiroplasma citri plasmid pSci6) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

13. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP047431 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

14. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP046369 (Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

15. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP046372 (Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

16. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

17. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

18. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP047427 (Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

19. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP053310 (Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

20. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP042474 (Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tgataaattttttcattttcattagtatt	Protospacer
*   ***** ***************** .

21. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc--	CRISPR spacer
tctaaaattatttcattttca--aattgttg	Protospacer
*********.***********  *.* *.

22. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP016481 (Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattgattcaatttcattcaaaga	Protospacer
********** **** ******* . **

23. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
actagaattgtttcattttcactattttc	Protospacer
 ***.****************.** *  *

24. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to MN693340 (Marine virus AFVG_25M356, complete genome) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattatttcatttccatttagatc	Protospacer
*********.********.**** . * *

25. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 6, identity: 0.793

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaatagtgtcattttcatttgatcc	Protospacer
******** ** *********** *   *

26. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to MG945457 (UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattttttctttttcattatccat	Protospacer
********* **** ********* . ..

27. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.759

---tctaaaattgtttcattttcattagtagc	CRISPR spacer
atgttt---gttgtttcattttcattagaagg	Protospacer
   *.*   .****************** **

28. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_LR214984 (Mycoplasma cynos strain NCTC10142 plasmid 11) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tttaaaattgtttcatttttattttcaaa	Protospacer
*.*****************.***  .*.

29. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_LR214984 (Mycoplasma cynos strain NCTC10142 plasmid 11) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tttaaaattgtttcatttttattttcaaa	Protospacer
*.*****************.***  .*.

30. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tttaaaattgtttcatttttattttcaaa	Protospacer
*.*****************.***  .*.

31. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
ttagtaattgttttattttcaatagtagt	Protospacer
*. . ********.******* ******.

32. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to MK448734 (Streptococcus phage Javan347, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaattgtttctttatcattctcttc	Protospacer
************** ** *****  .  *

33. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 7, identity: 0.759

tctaaaattgtttcattttcattagtagc	CRISPR spacer
ttattaagtgtttcaatttcattagtaga	Protospacer
*.   ** ******* ************

34. spacer 2.4|1594139|31|NC_003912|CRISPRCasFinder matches to MN855705 (Bacteriophage sp. isolate 119, complete genome) position: , mismatch: 7, identity: 0.774

tccatt--ctcatgaaatatttagccattattg	CRISPR spacer
--gattaaatcatgaaagagttagccattattt	Protospacer
   ***   ******** * ************

35. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NC_007392 (Spiroplasma citri plasmid pSci6) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

36. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP047431 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

37. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP046369 (Spiroplasma citri strain BR12 plasmid pScpBR12-1, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

38. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP046372 (Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

39. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

40. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

41. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP047427 (Spiroplasma citri strain C189 plasmid pScpC189-1, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

42. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP053310 (Spiroplasma citri strain C5 plasmid pScpC5-6, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

43. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP042474 (Spiroplasma citri strain CC-2 plasmid pScpCC2-2, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tgataaattttttcattttcattagtatttt	Protospacer
*   ***** ***************** .*

44. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.774

---tctaaaattgtttcattttcattagtagctg	CRISPR spacer
atgttt---gttgtttcattttcattagaaggtg	Protospacer
   *.*   .****************** ** **

45. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP016481 (Synechococcus sp. PCC 7117 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattgattcaatttcattcaaagata	Protospacer
********** **** ******* . ** *.

46. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 7, identity: 0.774

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
actagaattgtttcattttcactattttctt	Protospacer
 ***.****************.** *  **

47. spacer 2.1|1594139|29|NC_003912|CRT matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 8, identity: 0.724

tccattctcatgaaatatttagccattat	CRISPR spacer
gtttctcccatgagatatttagccattag	Protospacer
 .. .**.*****.**************

48. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 8, identity: 0.724

tctaaaattgtttcattttcattagtagc	CRISPR spacer
tctaaaaatttttcattttcattttggat	Protospacer
******* * *************   ...

49. spacer 2.3|1594271|29|NC_003912|CRT,PILER-CR matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 8, identity: 0.724

tctaaaattgtttcattttcattagtagc	CRISPR spacer
ttatcaattgtttcattttcatttgtttt	Protospacer
*.   ****************** **  .

50. spacer 2.5|1594205|31|NC_003912|CRISPRCasFinder matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 8, identity: 0.742

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
tttatcctcattatctttgcttgtattaatg	Protospacer
  ** .   ************ *********

51. spacer 2.5|1594205|31|NC_003912|CRISPRCasFinder matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

ggtagtagaattatctttgctggtattaatg	CRISPR spacer
tttatcctcattatctttgcttgtattaatg	Protospacer
  ** .   ************ *********

52. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to MN693340 (Marine virus AFVG_25M356, complete genome) position: , mismatch: 8, identity: 0.742

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattatttcatttccatttagatcgc	Protospacer
*********.********.**** . * *

53. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 8, identity: 0.742

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaatagtgtcattttcatttgatccga	Protospacer
******** ** *********** *   * .

54. spacer 2.4|1594139|31|NC_003912|CRISPRCasFinder matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 9, identity: 0.71

tccattctcatgaaatatttagccattattg	CRISPR spacer
gtttctcccatgagatatttagccattagtc	Protospacer
 .. .**.*****.************** *

55. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to MG945457 (UNVERIFIED: Microviridae sp. isolate 8714-1602, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattttttctttttcattatccataa	Protospacer
********* **** ********* . .. .

56. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaaatttttcattttcattttggatag	Protospacer
******* * *************   ... *

57. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
ttagtaattgttttattttcaatagtagtgt	Protospacer
*. . ********.******* ******.

58. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to MK448734 (Streptococcus phage Javan347, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
tctaaaattgtttctttatcattctcttcaa	Protospacer
************** ** *****  .  * .

59. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
ttattaagtgtttcaatttcattagtagaga	Protospacer
*.   ** ******* ************  .

60. spacer 2.6|1594271|31|NC_003912|CRISPRCasFinder matches to KT997847 (Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence) position: , mismatch: 9, identity: 0.71

tctaaaattgtttcattttcattagtagctg	CRISPR spacer
ataacccttctttcattttcattaggagcta	Protospacer
 . *   ** *************** ****.

61. spacer 1.1|1493881|34|NC_003912|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

200274 : 242165

Campylobacter_phage(50.0%)

capsid,tRNA,tail,transposase,terminase,integrase,plate

attL 229158:229173|attR 244450:244465

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002867122.1\|200274_202083_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	9.2e-111	36.5
WP_002851726.1\|202079_202598_+	translation initiation factor IF-3	K4F6Y6	Cronobacter_phage	3.1e-11	28.6
WP_002900789.1\|202636_203728_+	DNA adenine methylase	E5ERN5	Ostreococcus_lucimarinus_virus	1.3e-59	40.2
WP_002854172.1\|204812_205043_+	hypothetical protein	NA	NA	NA	NA
WP_014517172.1\|205159_205345_+	hypothetical protein	NA	NA	NA	NA
WP_011049615.1\|205423_205606_+	hypothetical protein	NA	NA	NA	NA
WP_002867128.1\|206042_206246_+	hypothetical protein	NA	NA	NA	NA
WP_002851912.1\|206504_206687_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_011049618.1\|207609_208239_+	LexA family transcriptional regulator	A7YG70	Campylobacter_phage	1.3e-59	99.1
WP_002843338.1\|208319_208640_+	hypothetical protein	A7YG71	Campylobacter_phage	2.9e-52	100.0
WP_002843339.1\|208649_208844_+	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_002873745.1\|208923_209211_+	hypothetical protein	A7YG83	Campylobacter_phage	3.0e-48	100.0
WP_011049621.1\|209238_210054_-	DNA adenine methylase	A7YG84	Campylobacter_phage	4.1e-151	99.3
WP_011049622.1\|210255_210744_-	phage virion morphogenesis protein	A7YG96	Campylobacter_phage	2.2e-88	98.8
WP_011049623.1\|210747_212964_-\|tail	phage tail tape measure protein	A7YGE8	Campylobacter_phage	0.0e+00	99.3
WP_002791365.1\|213005_213311_+	hypothetical protein	A7YG88	Campylobacter_phage	1.9e-32	90.1
WP_002873740.1\|213422_213662_-\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	9.4e-24	93.8
WP_002865376.1\|213814_214324_-\|tail	phage major tail tube protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_011049625.1\|214350_215544_-\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	1.2e-196	99.2
WP_011049626.1\|215554_216568_-	hypothetical protein	A7YGH6	Campylobacter_phage	5.5e-190	97.9
WP_002888062.1\|216667_217039_-	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	5.7e-68	100.0
WP_002872718.1\|217035_217542_-	DUF4376 domain-containing protein	A7YGY7	Campylobacter_phage	6.3e-86	98.2
WP_011049627.1\|217551_218631_-\|tail	phage tail protein	A7YGV0	Campylobacter_phage	1.9e-148	99.3
WP_002864870.1\|218630_219251_-\|tail	phage tail protein I	A7YGM6	Campylobacter_phage	2.8e-59	97.4
WP_011049628.1\|219247_220414_-\|plate	baseplate J/gp47 family protein	A0A1X9SH02	Bradyrhizobium_phage	2.6e-13	25.8
WP_002795239.1\|220410_220701_-	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002795238.1\|220697_220889_-	hypothetical protein	NA	NA	NA	NA
WP_011049629.1\|220897_221530_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.3e-08	34.6
WP_002784492.1\|221529_221844_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|221955_222204_-	hypothetical protein	NA	NA	NA	NA
WP_002827119.1\|222200_222542_-	hypothetical protein	NA	NA	NA	NA
WP_002870185.1\|222552_222942_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	4.2e-21	45.9
WP_002784501.1\|223090_223525_+	hypothetical protein	NA	NA	NA	NA
WP_002901531.1\|223526_224342_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_041176812.1\|224344_224872_+	hypothetical protein	NA	NA	NA	NA
WP_002803364.1\|224874_225852_+\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	5.1e-07	23.7
WP_002917934.1\|225967_226426_+	DUF1320 family protein	NA	NA	NA	NA
WP_002803360.1\|226418_227018_+	DUF1804 family protein	NA	NA	NA	NA
WP_038401728.1\|227017_228688_+\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	1.5e-91	41.2
WP_011049634.1\|228697_230068_+	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	2.6e-17	26.6
229158:229173	attL	NA	NA	NA	NA
WP_002888039.1\|230069_231308_+	hypothetical protein	M4M9M5	Vibrio_phage	1.9e-19	29.8
WP_002784519.1\|231433_231808_+\|tail	phage tail protein	NA	NA	NA	NA
WP_002784520.1\|231800_231992_+\|tail	tail protein X	NA	NA	NA	NA
WP_002784521.1\|231985_232963_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	1.1e-12	25.3
WP_002784523.1\|232959_233244_-	DNA-binding protein	NA	NA	NA	NA
WP_002876312.1\|233337_234009_+	endonuclease	NA	NA	NA	NA
WP_002784526.1\|234000_234276_-	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|234322_234772_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002793908.1\|234768_235461_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|235460_235730_-	hypothetical protein	NA	NA	NA	NA
WP_011049635.1\|235726_236689_-	hypothetical protein	NA	NA	NA	NA
WP_002791413.1\|236797_237184_-	hypothetical protein	D5GVQ0	Campylobacter_virus	2.7e-36	56.4
WP_002791414.1\|237180_237453_-	hypothetical protein	NA	NA	NA	NA
WP_002791416.1\|237516_237696_-	hypothetical protein	NA	NA	NA	NA
WP_002806832.1\|237692_238178_-	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	3.2e-18	34.0
WP_011049636.1\|238284_238626_-	hypothetical protein	NA	NA	NA	NA
WP_011049637.1\|238721_238907_-	hypothetical protein	NA	NA	NA	NA
WP_002891557.1\|238890_239094_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_011049638.1\|239096_240020_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.0e-09	25.3
WP_039332557.1\|240089_242165_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
244450:244465	attR	NA	NA	NA	NA

DBSCAN-SWA_2

527978 : 536463

Campylobacter_phage(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011049719.1\|527978_529013_+	DUF5309 family protein	A0A2I7SBK1	Pseudomonas_phage	1.2e-17	30.9
WP_002861675.1\|529012_529417_+	hypothetical protein	NA	NA	NA	NA
WP_002874379.1\|529397_529592_+	hypothetical protein	NA	NA	NA	NA
WP_168940553.1\|531298_532237_+	hypothetical protein	X2KLU0	Campylobacter_phage	3.1e-46	67.5
WP_002798141.1\|532238_532688_+	hypothetical protein	X2KR34	Campylobacter_phage	4.6e-80	100.0
WP_002873428.1\|532700_533336_+	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	6.5e-96	99.1
WP_011049723.1\|533332_533716_+	hypothetical protein	X2KXD5	Campylobacter_phage	2.0e-60	99.2
WP_002874385.1\|533708_534083_+	DUF1353 domain-containing protein	X2KPN9	Campylobacter_phage	2.3e-64	95.2
WP_011049724.1\|534079_535360_+	hypothetical protein	X2KRN1	Campylobacter_phage	3.3e-208	91.1
WP_002858146.1\|535408_535867_+	hypothetical protein	X2KQY5	Campylobacter_phage	2.0e-83	100.0
WP_002857883.1\|535928_536348_+	hypothetical protein	X2KX19	Campylobacter_phage	6.3e-55	100.0
WP_002781772.1\|536265_536463_+	hypothetical protein	X2KPN2	Campylobacter_phage	3.7e-26	96.9

DBSCAN-SWA_3

1319057 : 1371510

Campylobacter_phage(92.73%)

capsid,head,tRNA,tail,protease,integrase,terminase,portal

attL 1333589:1333606|attR 1348688:1348705

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002867346.1\|1319057_1320899_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_002867345.1\|1320895_1322875_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	1.2e-18	33.6
WP_002857924.1\|1322874_1323966_-	nitronate monooxygenase	NA	NA	NA	NA
WP_002874423.1\|1323962_1325168_-\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	6.5e-28	29.9
WP_002867343.1\|1325179_1327375_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	1.4e-07	44.0
WP_002853464.1\|1327358_1327583_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_002854049.1\|1327593_1328313_-	UMP kinase	NA	NA	NA	NA
WP_002867342.1\|1328364_1329558_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_002867341.1\|1329554_1330361_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_002856386.1\|1330347_1331013_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-17	34.8
WP_011049923.1\|1331082_1332261_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_074482847.1\|1332260_1333496_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_002867338.1\|1333440_1334409_-	RluA family pseudouridine synthase	NA	NA	NA	NA
1333589:1333606	attL	NA	NA	NA	NA
WP_002887899.1\|1334486_1335587_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_002787311.1\|1335925_1337101_+\|integrase	site-specific integrase	X2KXI6	Campylobacter_phage	1.7e-222	100.0
WP_002787309.1\|1337097_1337304_-	helix-turn-helix domain-containing protein	X2KXB9	Campylobacter_phage	4.8e-32	100.0
WP_002787307.1\|1337305_1337659_-	hypothetical protein	X2KRB4	Campylobacter_phage	2.1e-56	100.0
WP_002787306.1\|1337676_1338432_-	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	9.6e-147	100.0
WP_002787304.1\|1338409_1338676_-	hypothetical protein	X2KLR9	Campylobacter_phage	4.7e-40	100.0
WP_002858334.1\|1338659_1339031_-	hypothetical protein	X2KQ09	Campylobacter_phage	1.2e-60	100.0
WP_011049924.1\|1339031_1339256_-	hypothetical protein	X2KXC3	Campylobacter_phage	4.1e-37	100.0
WP_002869676.1\|1339264_1340026_-	hypothetical protein	X2KQ45	Campylobacter_phage	4.0e-124	99.5
WP_002787295.1\|1339962_1340277_-	hypothetical protein	X2KR17	Campylobacter_phage	1.6e-50	100.0
WP_002787293.1\|1340355_1340676_-	hypothetical protein	X2KLS2	Campylobacter_phage	1.4e-51	100.0
WP_002787289.1\|1341063_1341300_-	hypothetical protein	X2KXC5	Campylobacter_phage	8.1e-36	100.0
WP_002787287.1\|1341313_1342081_-	hypothetical protein	X2KRC2	Campylobacter_phage	3.7e-138	100.0
WP_002787283.1\|1342218_1342449_-	hypothetical protein	X2KLS5	Campylobacter_phage	5.0e-38	100.0
WP_002787281.1\|1342414_1342678_-	hypothetical protein	X2KQ17	Campylobacter_phage	4.1e-44	100.0
WP_002787279.1\|1342734_1343022_-	hypothetical protein	X2KXC8	Campylobacter_phage	2.4e-50	100.0
WP_011049928.1\|1343074_1343806_-	phage regulatory protein/antirepressor Ant	X2KRC4	Campylobacter_phage	2.8e-127	100.0
WP_002912332.1\|1344236_1344521_-	hypothetical protein	X2KLS8	Campylobacter_phage	4.5e-41	100.0
WP_002870299.1\|1344517_1344721_-	hypothetical protein	X2KQ19	Campylobacter_phage	4.8e-29	100.0
WP_002870336.1\|1344925_1345579_+	hypothetical protein	X2KXC9	Campylobacter_phage	1.2e-113	100.0
WP_002870274.1\|1345813_1346476_+	S24/S26 family peptidase	X2KRC9	Campylobacter_phage	4.2e-122	100.0
WP_011049930.1\|1346481_1347135_+	DNA/RNA non-specific endonuclease	X2KR27	Campylobacter_phage	9.3e-122	100.0
WP_002870263.1\|1347151_1347433_+	PLDc N-terminal domain-containing protein	X2KLT3	Campylobacter_phage	9.3e-47	100.0
WP_002913413.1\|1347446_1347644_-	hypothetical protein	X2KQ22	Campylobacter_phage	4.4e-27	100.0
WP_002870261.1\|1347561_1347981_-	hypothetical protein	X2KXD3	Campylobacter_phage	2.9e-52	100.0
WP_002870260.1\|1348209_1348671_-	hypothetical protein	X2KRD2	Campylobacter_phage	1.4e-84	100.0
WP_011049931.1\|1348719_1350003_-	hypothetical protein	X2KRN1	Campylobacter_phage	2.8e-239	99.8
1348688:1348705	attR	NA	NA	NA	NA
WP_011049932.1\|1349999_1350374_-	DUF1353 domain-containing protein	X2KPN9	Campylobacter_phage	3.4e-68	100.0
WP_002869963.1\|1350366_1350750_-	hypothetical protein	X2KXD5	Campylobacter_phage	2.4e-61	100.0
WP_002789149.1\|1350746_1351382_-	DUF4376 domain-containing protein	X2KRD7	Campylobacter_phage	1.3e-96	100.0
WP_002798141.1\|1351394_1351844_-	hypothetical protein	X2KR34	Campylobacter_phage	4.6e-80	100.0
WP_011049933.1\|1351845_1353411_-	hypothetical protein	X2KLU0	Campylobacter_phage	3.3e-210	100.0
WP_002869967.1\|1353403_1354036_-	hypothetical protein	X2KQ29	Campylobacter_phage	6.0e-110	100.0
WP_002788295.1\|1354032_1354350_-\|head,tail	head-tail adaptor protein	X2KXD7	Campylobacter_phage	9.2e-51	100.0
WP_002788293.1\|1354362_1354800_-\|head,tail	phage gp6-like head-tail connector protein	X2KR38	Campylobacter_phage	1.8e-76	100.0
WP_002788291.1\|1354796_1355048_-	hypothetical protein	X2KLU2	Campylobacter_phage	3.7e-18	100.0
WP_002788288.1\|1355058_1356225_-\|capsid	phage major capsid protein	X2KQ31	Campylobacter_phage	2.8e-214	100.0
WP_002788287.1\|1356241_1356799_-\|head,protease	HK97 family phage prohead protease	X2KXE1	Campylobacter_phage	1.1e-96	100.0
WP_002788286.1\|1356884_1357754_-	hypothetical protein	X2KRE5	Campylobacter_phage	3.9e-168	100.0
WP_011049936.1\|1357766_1363466_-	hypothetical protein	X2KR41	Campylobacter_phage	0.0e+00	99.9
WP_002788283.1\|1363525_1363864_+	hypothetical protein	X2KLU6	Campylobacter_phage	1.6e-56	100.0
WP_002788282.1\|1363855_1364071_-	hypothetical protein	X2KXE3	Campylobacter_phage	2.2e-32	100.0
WP_002788281.1\|1364151_1364508_-	hypothetical protein	X2KRE9	Campylobacter_phage	1.8e-58	100.0
WP_002788279.1\|1364504_1365485_-	hypothetical protein	X2KR44	Campylobacter_phage	3.9e-180	100.0
WP_002788276.1\|1365656_1366007_-	hypothetical protein	X2KXE7	Campylobacter_phage	7.3e-57	100.0
WP_002800770.1\|1366007_1366550_-	HK97 gp10 family phage protein	X2KRF4	Campylobacter_phage	5.7e-93	100.0
WP_002788272.1\|1366546_1367719_-\|portal	phage portal protein	X2KR48	Campylobacter_phage	3.1e-216	100.0
WP_002913302.1\|1367878_1368313_-	type II toxin-antitoxin system PemK/MazF family toxin	X2KLV2	Campylobacter_phage	2.4e-78	100.0
WP_011049938.1\|1368367_1369993_-\|terminase	terminase large subunit	X2KXM1	Campylobacter_phage	0.0e+00	100.0
WP_011049939.1\|1369996_1370632_-\|terminase	P27 family phage terminase small subunit	X2KRQ1	Campylobacter_phage	1.9e-111	100.0
WP_002869973.1\|1370882_1371233_-	HNH endonuclease	X2KRF8	Campylobacter_phage	1.9e-65	100.0
WP_002788257.1\|1371219_1371510_-	hypothetical protein	X2KM44	Campylobacter_phage	2.6e-15	97.4

DBSCAN-SWA_4

1506654 : 1515066

Bodo_saltans_virus(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002867277.1\|1506654_1508136_-	NTP transferase domain-containing protein	A0A2H4UUJ1	Bodo_saltans_virus	3.0e-51	29.7
WP_002867276.1\|1508137_1508863_-	class II aldolase/adducin family protein	A0A2H4UUW4	Bodo_saltans_virus	1.0e-12	27.5
WP_002867275.1\|1508849_1510151_-	HAD-IA family hydrolase	A0A2H4UUR3	Bodo_saltans_virus	3.8e-26	35.6
WP_002867274.1\|1510143_1510737_-	hypothetical protein	NA	NA	NA	NA
WP_002870158.1\|1510711_1511392_-	nucleotidyltransferase family protein	A0A2K9L821	Tupanvirus	2.5e-08	25.1
WP_002860371.1\|1511379_1511985_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	3.7e-16	35.0
WP_002867272.1\|1511972_1512992_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	3.9e-58	39.9
WP_002867271.1\|1512988_1514020_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.5e-146	73.3
WP_002867270.1\|1514016_1515066_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	2.5e-76	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_003912

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection