CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007086	Xanthomonas campestris pv. campestris str. 8004, complete sequence	3 crisprs	RT,WYL,cas3,DinG,csa3,DEDDh	4	15	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007086_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007086_1

613061-614091

Orphan

Consensus_repeat	Method
CTCACTGCCGGCTATGGCAGCAC	CRISPRCasFinder

21 spacers

The CRISPR arrays of NC_007086_1

>merge|NC_007086|1|613061-614091|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCACGCTCACTGGCGCCGATCAGAGTCAGCTGATCGCAGGCTATGGAAGTACCGAGACCGCGGGGAACGGCAGCGAGTTGATCGCCGGCTACGGCAGCACCGGCGTGGCCGGATCCGACAGCACCATCGTTGCCGGCTATGGCAGCTCTCAAACGGCCGGAGGCGGAAGCACGCTGACTGCCGGGTATGGCAGCACACAGACCGCCCGCAATGGCAGCGAGCTGACGGCCGGTTACGGCAGTACGGAAACCGCCGGTGCAGACAGCTCGCTGATCGCAGGCTACGGCAGCACGCAAACCTCCGGCGGCGACAGCTCGTTGACTGCCGGCTATGGCAGTACCCAAACCGCGCAGAACGGCAGCGACCTCACCGCCGGCTACGGCAGCACCAGCACGGCGGGCACCGATAGCTCGCTGATCGCCGGCTACGGCAGCACCCAGACCTCGGGCGGAGAGAGCTCGCTCACTGCCGGCTATGGCAGCACGCAGACGGCGCAGGACGGCAGCGACCTCACCGCCGGCTATGGCAGCACAGGCACCGCAGGTGCAGATAGCTCCCTGATTGCTGGTTATGGCAGTACGCAGACATCCGGCAACGACAGCTCGCTGACGGCGGGCTACGGCAGCACCCAAACCGCCCGTACCGGCAGCGACCTCACTGCGGGTTACGGCAGCACCTCCACCGCTGGTGCGGACAGCACGCTGATCGCCGGTTATGGCAGCACCCAGACTTCCGGCGGGGACAGTTCGCTCACCGCCGGCTACGGCAGCACCCAAACCGCGCGCAAGGGTAGCGACCTCACGACGGGGTACGGCAGCACCTCGACCGCCGGCGCGGACAGCACCTTGATCGCCGGCTACGGCAGCACGCAGACCTCGGGTAGCGAGAGTTCGCTCACGGCTGGCTATGGCAGTACGCAGACCGCACGCAAGGGCAGTGACCTCACCGCCGGCTACGGCAGCACCTCGACCGCCGGTGCGGACAGCACCTTGATCGCCGGCTACGGCAGCAC

>NC_007086|1|1|613061-614091|CRISPRCasFinder
GAAATCGCCACCTATGGCAGCAC	GCTCACTGGCGCCGATCAGAGTCAG
CTGATCGCAGGCTATGGAAGTAC	CGAGACCGCGGGGAACGGCAGCGAG
TTGATCGCCGGCTACGGCAGCAC	CGGCGTGGCCGGATCCGACAGCACC
ATCGTTGCCGGCTATGGCAGCTC	TCAAACGGCCGGAGGCGGAAGCACG
CTGACTGCCGGGTATGGCAGCAC	ACAGACCGCCCGCAATGGCAGCGAG
CTGACGGCCGGTTACGGCAGTAC	GGAAACCGCCGGTGCAGACAGCTCG
CTGATCGCAGGCTACGGCAGCAC	GCAAACCTCCGGCGGCGACAGCTCG
TTGACTGCCGGCTATGGCAGTAC	CCAAACCGCGCAGAACGGCAGCGAC
CTCACCGCCGGCTACGGCAGCAC	CAGCACGGCGGGCACCGATAGCTCG
CTGATCGCCGGCTACGGCAGCAC	CCAGACCTCGGGCGGAGAGAGCTCG
CTCACTGCCGGCTATGGCAGCAC	GCAGACGGCGCAGGACGGCAGCGAC
CTCACCGCCGGCTATGGCAGCAC	AGGCACCGCAGGTGCAGATAGCTCC
CTGATTGCTGGTTATGGCAGTAC	GCAGACATCCGGCAACGACAGCTCG
CTGACGGCGGGCTACGGCAGCAC	CCAAACCGCCCGTACCGGCAGCGAC
CTCACTGCGGGTTACGGCAGCAC	CTCCACCGCTGGTGCGGACAGCACG
CTGATCGCCGGTTATGGCAGCAC	CCAGACTTCCGGCGGGGACAGTTCG
CTCACCGCCGGCTACGGCAGCAC	CCAAACCGCGCGCAAGGGTAGCGAC
CTCACGACGGGGTACGGCAGCAC	CTCGACCGCCGGCGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC	GCAGACCTCGGGTAGCGAGAGTTCG
CTCACGGCTGGCTATGGCAGTAC	GCAGACCGCACGCAAGGGCAGTGAC
CTCACCGCCGGCTACGGCAGCAC	CTCGACCGCCGGTGCGGACAGCACC
TTGATCGCCGGCTACGGCAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007086.1\|WP_138922023.1\|601192_601891_-\|hypothetical-protein	unknown	unknown	unknown
NC_007086.1\|WP_011035763.1\|622239_622605_+\|hypothetical-protein	unknown	unknown	unknown
NC_007086.1\|WP_011035758.1\|617339_618629_-\|DUF3426-domain-containing-protein	unknown	unknown	gnl\|CDD\|378759
NC_007086.1\|WP_011035764.1\|623238_624606_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
NC_007086.1\|WP_011035759.1\|618914_619292_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_007086.1\|WP_011035766.1\|625052_625535_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NC_007086.1\|WP_011035747.1\|601899_603483_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_007086.1\|WP_019237208.1\|607758_609267_+\|TIGR04222-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|275063
NC_007086.1\|WP_011269479.1\|603558_604173_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_007086.1\|WP_011035754.1\|609910_610543_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_007086.1\|WP_019237209.1\|609266_609914_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_007086.1\|WP_011035765.1\|624648_625035_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_007086.1\|WP_011035761.1\|619936_620857_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NC_007086.1\|WP_012437220.1\|619440_619935_+\|hypothetical-protein	unknown	unknown	unknown
NC_007086.1\|WP_043877700.1\|610539_611514_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NC_007086.1\|WP_011035751.1\|607318_607762_+\|hypothetical-protein	unknown	unknown	unknown
NC_007086.1\|WP_011035750.1\|605987_607322_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350376
NC_007086.1\|WP_011035749.1\|604227_605991_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|371922
NC_007086.1\|WP_011035757.1\|616951_617224_-\|DNA-binding-transcriptional-regulator-Fis	unknown	unknown	gnl\|CDD\|179020
NC_007086.1\|WP_011035762.1\|621322_622243_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_007086.1\|WP_011035750.1\|605987_607322_+\|phosphatase-PAP2/dual-specificity-phosphatase-family-protein	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	4.11721e-45
NC_007086.1\|WP_011035758.1\|617339_618629_-\|DUF3426-domain-containing-protein	gnl\|CDD\|378759	pfam11906, DUF3426, Protein of unknown function (DUF3426). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.	1.29994e-34
NC_007086.1\|WP_011035764.1\|623238_624606_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
NC_007086.1\|WP_011035759.1\|618914_619292_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.88605e-09
NC_007086.1\|WP_043877700.1\|610539_611514_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	9.30641e-127
NC_007086.1\|WP_011035754.1\|609910_610543_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.79069e-34
NC_007086.1\|WP_011269479.1\|603558_604173_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	3.78122e-19
NC_007086.1\|WP_011035749.1\|604227_605991_+\|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	0
NC_007086.1\|WP_019237209.1\|609266_609914_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.78683e-10
NC_007086.1\|WP_011035761.1\|619936_620857_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	5.9931e-137
NC_007086.1\|WP_011035747.1\|601899_603483_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_007086.1\|WP_011035765.1\|624648_625035_-\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	4.16224e-50
NC_007086.1\|WP_019237208.1\|607758_609267_+\|TIGR04222-domain-containing-membrane-protein	gnl\|CDD\|275063	TIGR04222, integral_membrane_protein, TIGR04222 domain. The majority of the proteins with a domain as described by this model have an extreme C-terminal sequence that is consists of extremely low-complexity sequence, rich in Ser or in Gly interspersed with Cys. That C-terminal region resembles ribosomal natural product precursors, although there is no evidence that C-terminal regions of these proteins undergo any modification or have any such function.	8.57037e-42
NC_007086.1\|WP_011035766.1\|625052_625535_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	7.59427e-76
NC_007086.1\|WP_011035757.1\|616951_617224_-\|DNA-binding-transcriptional-regulator-Fis	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	3.72538e-51

>NC_007086.1|WP_043877700.1|610539_611514_+|phosphatidate-cytidylyltransferase
MNPYAFSGQLQQSSMHQQTLWLFSGIALVLVVATLISETLRWRARAQPSAVLDNLVARIRAWWVMAGVVGIAFVFGRAGVIGLFALVSLFALREFITLTPTRRGDYYALLAAFYIVLPWQYGLVWTGWYGMYTLLIPVYAFLVLPIPATIGGDTTRYLERTAKVQWGLMICVFCISHVPALLNLEIPGYAGRNLLLIAFLVIVVQSSDVLQYVWGKLAGRHLIAPKLSPSKTVEGFIGGVLSASLLGMALWWITPFAPWHAFGLALVANLMGFFGGLVMSAIKRDRGIKDWGHMIEGHGGVLDRLDSVCFAAPVFFHLIRYGWA
>NC_007086.1|WP_011035754.1|609910_610543_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MIARLIARACSGAIRTLTGARALWRGCAPSNERRVYYGNHASHGDFVLIWSSLPASLRHEVRPVAAADYWQRTALRRYLIHAVFNGVLIERDAARRTRDPVECLCDAVDAGDSLILFPEGTRNPDEGVLPFKSGLYHLARQRPELEFVPVWIDNLKRVMPKGKWLPLPLLCTTTFGAPLRLEADEDKQAFLARAREALLALSPDQLEARA
>NC_007086.1|WP_019237209.1|609266_609914_+|CDP-alcohol-phosphatidyltransferase-family-protein
MAHETTGLRARQRQLARALRGRGATPNGVSWVGIAFAALAGLMFYIALSAPAREGAAPLLLALLGLQGRLWCNRLDGVLARQARLVSRAGEVYNDAPDRLSDVLVCIGLGYGLQASVPWAAQLGWAAALCCVATAYVRMLGLACGTAEPRQGPMSRVQRMHWLSLMTVLALPLQWMGQPRAAAWVLIGALAVLIAGAVLTVVLRLRMIVRALEWT
>NC_007086.1|WP_019237208.1|607758_609267_+|TIGR04222-domain-containing-membrane-protein
MTTSPAVPLQATPEQRALWLRLQAYAFGPDADALPAFERRVAQQAHCSVAVAQQLVEEYRRFCFLACTSTAQATPSPLVDQVWHTHLTDTREYWDSFCPQVLQATLHHQPGRGSTAEDARFQQQYRATLERYELQFGAPPALLWPAPRPAPTAVPAAHDDASDDASSDALRALRGEPAPPSVRRLPRAVIGWAFAAAVAAWLAYSANGGVPQPLQWRGVHFLPFFITLIALGWSTSAWLRRALRGGRARAVDAVDASEFAYLSGGADRVADLLFTELLVRNAVYLDRDEDAQARRWVRWQPRIAVPPALEPALQALRSAEDPTVAWQALRGLAGPVRQQLIDKGLWLAPGAARWVRAVSTVPVAVVWVLGACKLVIGVQGGSPVGYLLGCMVLTSVLVLGFLLVPVRRTLSGDARLQARRQAVRRDAARTGADPGEAVALYGTVALVGTPWASYHEIRAPNTHHHDSTGSSCGGGGDGGDGGGGDSGGDGGGGCGGCGGGGD
>NC_007086.1|WP_011035751.1|607318_607762_+|hypothetical-protein
MTAVMTLASMRALLRQGAAIDRCAVLLLAAAVLLLGITDAPTVAQVAYALSALAGLAQRYWAFRVGLDADLLDAVLGQLERGHADDTQAAQQLDQALQDIGLLRHAPPVRDWTARWRGMRGLLRRQLLCAALQVLVLAIGLLAKGML
>NC_007086.1|WP_011035750.1|605987_607322_+|phosphatase-PAP2/dual-specificity-phosphatase-family-protein
MNAGARPFARAALWLAVLGPFFFLSYGLANTLAGRAASVPSVVFGWEHGMPFWPWTIVPYWSIDVFYAVSFFTCRTRRQLDTHALRLFTAQLLCVSCFLLWPLRYSFVRPDTEGVFGWLFAVLLGFDKPYNQAPSLHIVLLVVLWVRYGAQLQGMWRWLLHGWFALIGISVLTTYQHHFIDVPTGLAAGWLCVWLLPERIAAPWTDARLARDPRRWRLAALYLGGAGVTAGMALWLGGAALWLLWMSGALLLVALNYALLGPGGFQKRSDGQLSLAARWLYAPYLLAAWCNSRLWTRRAPLPRAVCDDVWLGRIPLPAQRAAFAVVDVSAELSLRHAHANDRIIPMLDLVAPAPASLRAAAQAIEAARAHGPVLVCCALGYSRSAASVVTWLVLSQRAASISEAMACVRAARPSIVLGPHHQAAIAAACANDAAADALIAQVPA
>NC_007086.1|WP_011035749.1|604227_605991_+|bifunctional-alpha/beta-hydrolase/class-I-SAM-dependent-methyltransferase
MRTVVEREFASFDGAPLFYRHWPVQAAADAATPPKAVVLLHRGHEHSGRVMHLAEELQLPDAQFFAWDARGNGRSPGARGDAPGFDALVRDLDSFIAHIGATHGIAVQDIVVIAQSVGAVVASTWVHDYAPPLRALVLASPAFKVKLYVPFARAGLALMQALRGNFFVNSYVKPQWLTHDPARVDSYRTDPLITRPISVRVLLGLYAAGDRVVADAQAITVPTQLLVSGADFVVHRGPQDRFYENLRSPIKQRHFLPGFFHDTLGERDRAIAIAQIRQFVSERFAQPPVRADLRDAHRAGPSFEEAERLAWPSQRNSLQDLRWRGVRAGLRLGGTLSEGIALGLQTGFDSGSTLDYIYRNQARGRGPLGRMIDRNYLNAIGWRGIRIRGAHLGELLRATATRLRQAGQPVRVLDIAAGHGRYVLEALGSGAQRADAIVLRDFSPLNVTQGAALIQALGAGDIARFEQGDAFDPVSVGAVDPAPTLAVVSGLYELFADNDQVARSLAGVAAAVPPGGYLLYTGQPWHPQLEFIARALTSHRDGVAWVMRRRSQQEMDGLVEAAGFRKVDQRIDAFGIFTVSLAQRINA
>NC_007086.1|WP_011269479.1|603558_604173_+|CDP-alcohol-phosphatidyltransferase-family-protein
MASIYALKGRFQDLLRPMVGALYRGGITANQVTLIAAAISVLVAAVVYRAGTSWPLLYLLLPVWMLLRMALNAIDGMLAREFGQQSRLGAYLNELCDVVADATLYLSLLGVPGVNASALWSFALLAALTEYAGVLGLMVGAGRRYDGPMGKSDRAFVIGALGLALAFGLLGGHGVTGVALLLCLACAATVWRRVRAGLADAAAR
>NC_007086.1|WP_011035747.1|601899_603483_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MASDFLPVRRALLSVSDKTGLIDLARALVARNVELLSTGGTAKAIRDAGLPVKDVAELTGFPEMMDGRVKTLHPLVHGGLLGRAGVDEAVMAEHGIAPIDLLVLNLYPFESVTAKADCTLADAVENIDIGGPAMLRSAAKNFARVAVATDPAQYADLLAELEANNGQLSAAQRFALSVAAFNRVAQYDAAISNYLSAVADSAESVPTRSPFPAQINSNFIKVMDLRYGENPHQSGAFYRDLYPVPGTLATFQQLQGKELSYNNLADADAAWECVRQFDAPACVIVKHANPCGVAVGVACGDAYELAYATDPTSAFGGILAFNRTLDAATAKAILDRQFVEVLIAPDYEPGALDYATKKANVRVLKIPHGAGLNNYDTKRIGSGLLMQSADNRGMSLGELSVVTKRAPSDAELADLLFAWRVAKYVKSNAIVYAKDSRTIGVGAGQMSRVVSAKIAALKAEEAKLTVAGSVMASDAFFPFRDGIDAAAAAGIQAVIQPGGSMRDGEVIAAADEHGLAMVFTGVRHFRH
>NC_007086.1|WP_138922023.1|601192_601891_-|hypothetical-protein
MNNSATNHLLKIVIAARDLRLHASFIDGWKRIFGEAESLEIHRKIGLFYKLIDTAAQEVLAADPEQADAVNHWRSQLYTGLSAAAARNWTDFHAHIDSHTINYLKMQSRVVHLTNGDKAIDYEELMRAKSLLLEAIEEIKNSDLSGNAKVAVIRRIRTLLAAIDDYSLTGNEDVLDQFKSGIYDFAANPEIREKGLGEKFAQAAEVLANIVTSVTGFQQLAAPTLKLLGLGK
>NC_007086.1|WP_011035757.1|616951_617224_-|DNA-binding-transcriptional-regulator-Fis
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATLRKKLKEYGLT
>NC_007086.1|WP_011035758.1|617339_618629_-|DUF3426-domain-containing-protein
MSETPPPRRPLATFLRAAPAAPPLVPTPPAPSTAPADTVVPAPEPAPVAAPLATPVPAPVRPLPAPPRSTEAAPPDATARAPDTLIAPTRRDAPLPASPLPLPATPPAPVPAHSSAQTADPAMRRSADDRPTAAAAIAPAVVATSTAPLAPAAAAHATNAPDQPAIAAQSAASAPGATVTQTPQASPPANQDGQPAPAAPQAAPEAEAGASTEAELEADPDDTATTPAPTSTSASASASASTSTSTPASPSSSPTPAPTLEPAFARRGLVRPRLRASGWQWAVLVGLVLLLGLQIVIADRARLAGDARWRPLVSAACAVARCALPPWRDPATLTLLTRDVRPLPAYPGVLQIQASFRNDARWAQAWPWLQLSLSDADGRVIGTRVCSPQDYLGQAPAAQDTLAPGQAVQVAFRVREPAASTAAFSFDFR
>NC_007086.1|WP_011035759.1|618914_619292_-|helix-turn-helix-transcriptional-regulator
MSKLYERVREARSLTKLTQEALAGELGVTRSAVAQWEMAEGTAPSVDNLIGLAKRSGMTFEYLATGRGERVFGPPVSSIAEEPAQYRHLDEQQRVLLSRFDALAPRQRTGLLDLLLAEGKPRRRR
>NC_007086.1|WP_012437220.1|619440_619935_+|hypothetical-protein
MCKRLWGWRAAPRPKPVPPTPWPAYSPLDPAVARFAGAARYLVWRRDQDWTAVIDGLHWGPALAPRWWAWRHRHWRLLAAGMGVLGSAGGLWLASASAGGWLLAWAALGLVELGMRASAVRQASRWRCAALQRAGWQPVTQLRAISVEDAVTTARIRSGELRPE
>NC_007086.1|WP_011035761.1|619936_620857_-|50S-ribosomal-protein-L11-methyltransferase
MPFLELTLPCTRATQPRFENALEDVGALAVTMLDAHAGTINERAILEPGVGEVRLWEETELTALFDGDSDPLMLLAALEAFDPSLDTRHATFRSVEDSAWERAWIDQFKPMRFGARTFIVPWNQDLPEEANTPDAAVVRLDPGLAFGSGTHQTTALCLRWLDALAGEGQLQGCSVLDFGCGSGILALAALKLGAANAVGVDYDPQALLATAENAERNAMEAQMQVYLPQDEPVQTYPVVLANILATALDALAETLAARVAPGGRIALSGIMQGQEQDLVQRYTPWFEHLHCEYDAEWVRIDGVRRH
>NC_007086.1|WP_011035762.1|621322_622243_+|hypothetical-protein
MPLVRARHLWLLLAPAALAAAWWQARPQTAGVAPAAVVETAAAHVAPTAGQPHAVPERSAALQLARGTAGEPPQDLYRYAQQLQQQVRAGDAQAGWRLSRVYDYCAPYAVSPAGYAADSAWIASQPAPGVAAMHAARERVAQRCAGFAPSDGLSPRVVAQQRQAAARAGSLAAEAAMLALGEPLQTTPGYKRALVQRVLASRDPEAYLALAPAMGARASGDDSLDGYVAGDQFAELAWQVAACRLGLDCSAQSTLVTSYCANAGICSRDSAQDFVSFVFDAAVPRQGADKVDEMVDTLVTRSETQS
>NC_007086.1|WP_011035763.1|622239_622605_+|hypothetical-protein
MNYRRLAHGAKFWFWVALFVAYSAAAVGIVMIDTADHRYQPLSVKRITVGADAQLRQHGASQVAAVYRASSGMPFASLPAGATFQVVWPDGSTETMTVVDPSSPSGAVPVPGSQQPAAKRR
>NC_007086.1|WP_011035764.1|623238_624606_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MLDKVVIANRGEIALRILRACHTLGIRTVAVHSTVDRNLKHVAMADESVCIGPAASSDSYLNIPALIAAAEVTDAQAIHPGYGFLSENADFAERVEESGFIFIGPKADTIRLMGDKVEAIRAMKAAGVPCVPGSGGPLGDDIVANTKIAREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISEELRAEIGKVCVDACIRIGYRGAGTFEFLFEGGRFYFIEMNTRIQVEHPVTERITGIDLVCEQLRIAAGHKLSIKQSDIVLRGHAIECRINAEDPETFMPNPGLITAFHPPGGPGVRVDTHIYAGYKVPPNYDSMIGKLIVHGPDRETAIARMRVALSEMVVDGIKTNIPLQQRIMRDKGFQAGGQNIHYLEKRLAERKNKSIALV
>NC_007086.1|WP_011035765.1|624648_625035_-|four-helix-bundle-protein
MENRESAQRPHERLDAWRDSMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMNALRRRGAA
>NC_007086.1|WP_011035766.1|625052_625535_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MDLRKIKKLIDLLEESNLAEIEIKEGEESVRLARVPKGTQVMSAPMQQYAPAPAAPAPAATMPMQSPTEASTGGAKQGAALPEGHVLRAPMVGTFYTSPSPDKPAFVTVGQQVKAGETLAIIEAMKMFNPIEADISGTIVAVLSDTGQPVEFDQPLFVIG

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Crispr_ID: NC_007086_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007086_2

2696635-2696722

Orphan

Consensus_repeat	Method
TGCCCGGCCACCATCGCGGGACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007086_2

>merge|NC_007086|2|2696635-2696722|CRISPRCasFinder
TGCCCGGCCACCATCGCGGGACACCCTTTAGAGCGGCTGATCTGCGACTTGGTTGCAAGGCCCCTGCCCGCCCACCATCGCGGGACAC

>NC_007086|2|2|2696635-2696722|CRISPRCasFinder
TGCCCGGCCACCATCGCGGGACAC	CCTTTAGAGCGGCTGATCTGCGACTTGGTTGCAAGGCCCC
TGCCCGCCCACCATCGCGGGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007086.1\|WP_011037113.1\|2694277_2695501_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NC_007086.1\|WP_011037112.1\|2695644_2696400_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NC_007086.1\|WP_011037105.1\|2706024_2707353_+\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|311255
NC_007086.1\|WP_011037120.1\|2689723_2690056_-\|hypothetical-protein	unknown	unknown	unknown
NC_007086.1\|WP_011037116.1\|2692744_2693146_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NC_007086.1\|WP_016945285.1\|2707922_2708216_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340989
NC_007086.1\|WP_011037114.1\|2693580_2694246_+\|flagellar-basal-body-rod-modification-protein-FlgD	unknown	unknown	gnl\|CDD\|183639
NC_007086.1\|WP_011037115.1\|2693149_2693557_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NC_007086.1\|WP_011037109.1\|2700001_2701189_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|237180
NC_007086.1\|WP_011037104.1\|2707500_2707914_+\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|235560
NC_007086.1\|WP_011037121.1\|2688419_2689646_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NC_007086.1\|WP_011269781.1\|2704598_2705804_+\|flagellin	unknown	unknown	gnl\|CDD\|236344
NC_007086.1\|WP_011037117.1\|2691335_2692280_+\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
NC_007086.1\|WP_011037118.1\|2690448_2691093_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NC_007086.1\|WP_011037119.1\|2690070_2690382_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NC_007086.1\|WP_011037111.1\|2698178_2698871_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NC_007086.1\|WP_011269780.1\|2701200_2703075_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|183697
NC_007086.1\|WP_005994332.1\|2697354_2698140_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NC_007086.1\|WP_011037107.1\|2703074_2704280_+\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|236345
NC_007086.1\|WP_011037110.1\|2698881_2700000_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399

Protein	Function_ID	Function_description	E-value
NC_007086.1\|WP_011037113.1\|2694277_2695501_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	1.34821e-159
NC_007086.1\|WP_011037112.1\|2695644_2696400_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	3.04931e-127
NC_007086.1\|WP_011037105.1\|2706024_2707353_+\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|311255	pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus. The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.	1.65484e-57
NC_007086.1\|WP_011037111.1\|2698178_2698871_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	2.01452e-83
NC_007086.1\|WP_011037116.1\|2692744_2693146_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.52839e-84
NC_007086.1\|WP_016945285.1\|2707922_2708216_+\|hypothetical-protein	gnl\|CDD\|340989	cd17431, MFS_GLUT_Class1, Class 1 Glucose transporters (GLUTs) of the Major Facilitator Superfamily. GLUTs, also called Solute carrier family 2, facilitated glucose transporters (SLC2A), are a family of proteins that facilitate the transport of hexoses such as glucose and fructose. There are fourteen GLUTs found in humans; they display different substrate specificities and tissue expression. They have been categorized into three classes based on sequence similarity: Class 1 (GLUTs 1-4, 14); Class 2 (GLUTs 5, 7, 9, and 11); and Class 3 (GLUTs 6, 8, 10, 12, and HMIT). GLUTs 1-4 are well-established as glucose and/or fructose transporters in various tissues and cell types. GLUT1, also called solute carrier family 2, facilitated glucose transporter member 1 (SLC2A1), displays broad substrate specificity and can transport a wide range of pentoses and hexoses including glucose, galactose, mannose, and glucosamine. It is found in the brain, erythrocytes, and in many fetal tissues. GLUT2 (or SLC2A2) is found in the liver, islet of Langerhans, intestine, and kidney, and is the isoform that likely mediates the bidirectional transfer of glucose across the plasma membrane of hepatocytes and is responsible for uptake of glucose by beta cells. GLUT3 (or SLC2A3) is found in the brain and can mediates the uptake of glucose, 2-deoxyglucose, galactose, mannose, xylose and fucose, and dehydroascorbate. GLUT4 (or SLC2A4) is an insulin-regulated facilitative glucose transporter found in adipose tissues, and in skeletal and cardiac muscle. GLUT14 (or SLC2A14) is an orphan transporter expressed mainly in the testis. GLUT proteins are comprised of about 500 amino acid residues, possess a single N-linked oligosaccharide, and have 12 transmembrane segments. They belong to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.0014863
NC_007086.1\|WP_011037114.1\|2693580_2694246_+\|flagellar-basal-body-rod-modification-protein-FlgD	gnl\|CDD\|183639	PRK12634, flgD, flagellar basal body rod modification protein; Reviewed.	6.383e-133
NC_007086.1\|WP_011037115.1\|2693149_2693557_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	1.77833e-84
NC_007086.1\|WP_011037109.1\|2700001_2701189_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|237180	PRK12711, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	0
NC_007086.1\|WP_011037104.1\|2707500_2707914_+\|flagellar-export-chaperone-FliS	gnl\|CDD\|235560	PRK05685, fliS, flagellar export chaperone FliS.	1.15393e-45
NC_007086.1\|WP_011037121.1\|2688419_2689646_-\|sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.36825e-52
NC_007086.1\|WP_011037117.1\|2691335_2692280_+\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.15499e-39
NC_007086.1\|WP_011037118.1\|2690448_2691093_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	4.43762e-124
NC_007086.1\|WP_011037119.1\|2690070_2690382_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.03432e-14
NC_007086.1\|WP_011269781.1\|2704598_2705804_+\|flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	4.41911e-146
NC_007086.1\|WP_011269780.1\|2701200_2703075_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|183697	PRK12714, flgK, flagellar hook-associated protein FlgK; Provisional.	0
NC_007086.1\|WP_005994332.1\|2697354_2698140_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	3.95269e-155
NC_007086.1\|WP_011037107.1\|2703074_2704280_+\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|236345	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed.	6.05253e-154
NC_007086.1\|WP_011037110.1\|2698881_2700000_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0

>NC_007086.1|WP_011037112.1|2695644_2696400_+|flagellar-basal-body-rod-protein-FlgF
MDKALYVAMTGARASLQAQSTVSHNLANVDTVGFKAALANTEAFQIRGKGYPSRIDALHVDQGFDRSQGHQKVTGNPLDVSLQQDRWLAVQSPDGSEAYTRNGELALTANGQLVTANGHAVLDEGGNPMTIPPHQAMEIGSDGSISIIPQGEGPQTMAIVGKMKVVDAPADRLMRRPDGLMRNTSTDPAQAFAVATGKTVNSGMLEGSNVDAAGALVEMIQLQRQFEMQVKIIKNGDDNAQSANSLLRVSG
>NC_007086.1|WP_011037113.1|2694277_2695501_+|flagellar-hook-protein-FlgE
MAFNTSLSGINAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRVSNVAQQFSQGNIDPTGRSLDLAISGEGFFAVSSNGAKMYTRAGNFQTDANGYVINPQGARLQVFAPNPSGNGFDVGRLSDLQLLTTDSPPKSTSTVNLAFTLPGNASAPTVTPFNPADDKTYSHSTGGINVYDSLGVSHVQTSYFVKTANPNEWQVHNYVDGSAVGAPTTLQFSDTGSLTTPANGIVAMDPFTPSTGAGVLSMQLNVSGSTQYGEAFALRDTRQDGYASGKLNEISIDTSGVVFARYSNGADKALGQVALNSFVNPQGLQSQGNNMWAESYTSGAARVGAPDTSDLGQIESGSLEASTVDLTEQLVNMIVAQRNFQANSQMISTQDQVTQTIINIR
>NC_007086.1|WP_011037114.1|2693580_2694246_+|flagellar-basal-body-rod-modification-protein-FlgD
MSTIGSDLYNSLGLTTSSKVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVGNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQTDTAGAKSKLATYVDAPVDSVTIGSDGLYLNLTGLGTSPLANVLRVS
>NC_007086.1|WP_011037115.1|2693149_2693557_+|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDVAGSALHAQSVRLSTIASNLANADSIAGSAEATYKPIEPIFQAQQNRQDPSLTSVNVKEITTTNAPPIRRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR
>NC_007086.1|WP_011037116.1|2692744_2693146_+|flagellar-basal-body-rod-protein-FlgB
MSSPFTSFLGIHGDALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKAAEGVRDGGLMQATDAKHYEIGSTAGLNPFQITREADQPSLDGNTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAITGQ
>NC_007086.1|WP_011037117.1|2691335_2692280_+|chemotaxis-protein-CheV
MTHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPTEFAGVADVRGRSVPVLDLGLAIGHPERDPHGDNGPGYLVVAEFNRSVQGFLVSGVERIVNIAVEDIHPPPELGAEATYLTAVTRFQGELIQVIDVESVLADIAKVSKDVQLDPGLQLVTSDRQFQVLVVDDSRVARQQIRSVLDQLGVAATLLSDGRQALDHLLQVAASGENPAERYAMVISDIEMPAMDGYTLTTEIRRTPGLQGLYVLLHTSLSGVFNNAMVEQVGANAFVAKYSAHELADYVLARLRVVAEAA
>NC_007086.1|WP_011037118.1|2690448_2691093_-|flagellar-basal-body-P-ring-formation-protein-FlgA
MRLLLLVILLVSAPAWADGYQSVDSIRAAALATVGPDAEAEATLDPGLRMPACPIALQAQPTGTNTVEVACPQPAGWRLFVPLKVRRNQDVLVLRRGITSGETISLADISIEKRDAARIVGAVLADPATAVGKTARRILPAGTLLSANDLVTPRLVRRGDTVPLVSRNGGLEVRMSGRALSDAGENERVSVENSSSRRVVQGIVEASGTVVVSR
>NC_007086.1|WP_011037119.1|2690070_2690382_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIEGNLPTAATLRTATVGSKIASAGEDRASPVAATPPTDSVKLTGEATNLQALQRELSQSSAIDTGRVQAVKEALQNGSYSINPDAIASRMMDLNQQLAG
>NC_007086.1|WP_011037120.1|2689723_2690056_-|hypothetical-protein
MNVNDSLQRLSDALAGERQALIEHDIESLMRHTQDKLAALRALEVQMPEGQEERLRELAEANRANGALLARRRREVNWALRHLGRTESAPSYDANGQSSVLRAGRSLAVA
>NC_007086.1|WP_011037121.1|2688419_2689646_-|sensor-histidine-kinase
MTAKFFLNQTLLPSSAMLRAFGDQMLEGVLLFRADGQLIMANAIARQSLCKEDPTDDRNLGERISQVLPADALNQARSKGTWTGSLPVSDRVVIAHLYYNEEQGVGHFLALFHNIEGQQDYERELQQRHAELRQAYLRLNGAQDKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTLIEAYERALQAPDPKALIPEIDEIRNRADIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSDRSESWKMVDLHAGLESTINIIWNELKYKVTLERNYAELPLVECLPSELNQVYMNLLLNAGQAIVERGTITVTTGRDEAENVWIQFQDSGAGIAPDLLQRIFDPFFTTKPVGSGTGLGLSISYGIINKHHGRIDVESVPGQGASFRIVLPVRQPR
>NC_007086.1|WP_005994332.1|2697354_2698140_+|flagellar-basal-body-rod-protein-FlgG
MNQALWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDRAAFEDLLYQQVRAPGGSTSAQTQLPTGLQLGTGVRVVSTFKGFDQGSQQQTGRALDVMVNGRGFFEVQMPDGTSAYTRDGTFQINAQGEVVTNSGYPLQPGIQVPEGAQSLTIGNDGTISVTLAGQAAAQEIGALTLTDFINPSGLQAKGENLFVETTASGPAQNGTPGLNGLGTTVQGALEGSNVNTVEELVSMIETQRAYEMNAKAISTTDSMLGYLNNNV
>NC_007086.1|WP_011037111.1|2698178_2698871_+|flagellar-basal-body-L-ring-protein-FlgH
MSRLPSLSSLCLAIACSALLGGCVAAGDVRPFAELAPIVPVVAPVAQPTAGAIYAAGPSLNLYGDRRARDVGDLLTVNLVENTTASSTANTSISKADTVDMSTPTLLGVPLTVNGIDVLRNSTSGDRSFDGKGNTAQSNRMQGSVTVTVMQRLPNGNLVIQGQKNLRLTQGDELVQVQGIVRAADIAPDNSVPSSKVADARIAYGGRGAIAQSNAMGWLSRFFNSRLSPY
>NC_007086.1|WP_011037110.1|2698881_2700000_+|flagellar-basal-body-P-ring-protein-FlgI
MNLSSLPHRLLAAAVALCAIAAPASAERIKDLAQVGGVRGNALVGYGLVVGLDGSGDRTSQAPFTVQSLKNLLGELGVNVPANVNPQLKNVAAVAIHAELPPFAKPGQPIDITVSSIANAVSLRGGSLLMAPLKGADGQVYAMAQGNLVVGGFGAQGKDGSRVSVNIPSVGRIPNGATVERALPDVFAGSGEITLNLHQNDFTTVSRMVAAIDNSFGAGTARAVDGVTVSVRSPTDPSARIGLLARLENVELSPGDAPAKVVVNARTGTVVIGQLVRVMPAAIAHGSLTVTISENTNVSQPGAFSGGRTAVTPQSTIKATSEGSRMFKFEGGTTLDQIVRAVNEVGAAPGDLVAILEALKQAGALTAELEVI
>NC_007086.1|WP_011037109.1|2700001_2701189_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MRISASPIDLNPSTKADPAKIDKVSRQLEGQFAQMLVKSMRDASSGDPMFPGENQMFREMYDQQMAKALTDGKGLGLSAMISKQLSGDTGGPALNTSLSTADAAKAYALVAGKRDASLPLPARDGAATSVGASLGAAVGTAAGIGAGGLTGIGMSQVLDLIAGRTGGEAGGDDAAALSWPSANDRWSDVTATDAADANAAVNATAASSAAASLGERTPEGFVAKIWTHAQKAARELGVDPRALVAQAALETGWGRRGIGNGGDSNNLFGIKATGWNGAKVTTGTHEYVNGVKTTETADFRAYGSAEESFADYVRLLKNNSRYQTALQAGTDIKGFARGLQQAGYATDPGYAAKIAAIANGPTIDRAVAAIGNAAADLSNRYASTAEPVGLGTIRR
>NC_007086.1|WP_011269780.1|2701200_2703075_+|flagellar-hook-associated-protein-FlgK
MSIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKISDVGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDSLYSNTATNVAGLWSNFFDSASALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGNSIDNASADLLDQRDALVSKLVGYTGGTAVIQDGGFMNVFTAGGQALVVGTTAAKLTTVADPYQPTKLQVAMQTQGQNVSLSPSSLGGQIGGLLEFRSNVLEPTQAELGRLAVGMASSFNTAHSQGMDLYGALGGNFFNIGSPTTAANPKNTGTAALTASFSNLGAVDGQNVTLSFDAGSWKATRTDTGSTVPLTGTGTAADPLVVNGVSMVVGGAPANGDKFLLQPTAGLAGSLSVAITDPSRIAAATPVKATATIANLGTGKISDVKVTNAQNPALLTPSSVEFIDANQYTIDGTGPFAYTPGQTISANGWSFALDGAPKVGDTFGVGPMGAGSSDNGNAKLLAKVEDAKALNGGTVTLNGALSGLTTSVGSAARAANYAADAQEVINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTIFQAILGAVR
>NC_007086.1|WP_011037107.1|2703074_2704280_+|flagellar-hook-associated-protein-FlgL
MTNRISTSMMYSQSVSAMTAKQSRLNQLEAQLSSGQRLVTAKDDPVAAGTAVGLDRALAAITRFGENANNVQNRLGLQENALAQAGDKMARVTELAVQSNNSSLSPDDRKAIASELTALRDSMVSLANSTDGTGRYLFAGTADGNAPFIKSNGNVLYNGDQTQRQVEVAPDTFVSDTLPGSEIFMRIRTGDGSVDAHANATNTGTGLLLDFSRDASSGSWNGGSYSVQFTAADTYEVRDSTNALVSTGTYKDGGDINAAGVRMRISGAPAVGDSFQIGASGTKDVFSTIDDMVAALNSDTQTPTQKAAMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLSSIRDLDYASAIGQYELERASLQAAQTIFQQMQSSSLFNLIR
>NC_007086.1|WP_011269781.1|2704598_2705804_+|flagellin
MAQVINTNVMSLNAQRNLNTNSSSMALSIQQLSSGKRITSASVDAAGLAISERFTTQIRGLDVASRNANDGISLAQTAEGAMVEIGNNLQRIRELSVQSANATNSATDREALNSEVKQLTSEIDRVANQTSFNGTKLLNGDFSGALFQVGADAGQTIGINSIVDANVDSLGKANFAASVSGAGVTGAATASGSLSGITLAFKDASGAAKSVAVADIKIASGDTAADINKKVASAINDKLDQTGMYASIDTSGNVKLESLKAGQDFTSLSGGTSGAAGITAGAGIQTASAASGSTASTLSSLDISTFSGAQKALEIVDKALTSVNSSRADMGAVQNRFTSTIANLAATSENLTASRSRIADTDYAKTTAELTRTRTQILQQAGTAMLAQAKSVPQNVLSLLQ
>NC_007086.1|WP_011037105.1|2706024_2707353_+|flagellar-filament-capping-protein-FliD
MASVISTSSSGLDIPTVVSTLVSRQKDPEQARINKAGTAATTQLSAISQIKSSMTTLKSALDKVVSSADTNAYKASVPTDAGFTATTTSSAAPGNYSVEVVSLASAQKLASGAFTADATVGSGTLTIGYGDKSITVDISGTDKLADIAAAINKAAGGKGVTASVVTANDGQHLVFNAVDTGTKGALTVSASDPSLSALTFGAGVTGGLTQQVAAADALVRVDGFERTSSSNTVTDIVPGVVLNLTKAAEGTKVTLGVTADTSGLKGNLTAFAAAYNTANTLLKNSSSYNAETRTASALTGDSLVRGLQQQLRGQVSGSISELKALGLTIDKDGVMSFDGGKFDTAIAADGGAAAEALGKDSKFGSGLTKLLDANVNVNNGTLTLRSDSLNKQIKGFEADLDNLDARMEKLTDRYTAQFTAMETMISKMQGATGSLSSLLAIK
>NC_007086.1|WP_011037104.1|2707500_2707914_+|flagellar-export-chaperone-FliS
MYGSNRQYAEQYRKVGVSTSVTEADPHKLVSLLFAGACQRIRLAQACLAQGDQARKGKAIGEACAIVGHLNGSLDHEAGGEIAGNLSALYDYVIQRLTAANLHNDETALTEALDLLSEIDSAWNSIPLDQRGIAAAS
>NC_007086.1|WP_016945285.1|2707922_2708216_+|hypothetical-protein
MHSVQSLQDEVSEIRIAMSREEFEVMPHMLDVHDLHVQEYCKHADVAQDRDAVQALQAMQQELVRMMRERQRKLLELIRAQRTSATASRAYARVGRI

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Crispr_ID: NC_007086_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007086_3

5044058-5044203

Orphan

Consensus_repeat	Method
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007086_3

>merge|NC_007086|3|5044058-5044203|CRISPRCasFinder
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGCCCCCCCCCTGATACCGCACCCTCATCCGCCCTTCGGGCACCTTCTCCCGGAGGGAGAGGGAAGATGCAGGCCCAGGCGCAGAACAAATCCGCACAGCACGGC

>NC_007086|3|3|5044058-5044203|CRISPRCasFinder
GGAAGATGCAGGCCCATGCGCAGAACAAATCCGCACAGCACGGC	CCCCCCCCTGATACCGCACCCTCATCCGCCCTTCGGGCACCTTCTCCCGGAGGGAGAG
GGAAGATGCAGGCCCAGGCGCAGAACAAATCCGCACAGCACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007086.1\|WP_016945064.1\|5047939_5048863_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|182548
NC_007086.1\|WP_014509595.1\|5035825_5036599_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NC_007086.1\|WP_011039227.1\|5039144_5043161_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|227250
NC_007086.1\|WP_011270102.1\|5027178_5029083_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NC_007086.1\|WP_011039231.1\|5047207_5047651_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
NC_007086.1\|WP_011270104.1\|5029765_5031028_-\|tetracycline-resistance-MFS-efflux-pump	unknown	unknown	gnl\|CDD\|340946
NC_007086.1\|WP_011270106.1\|5036642_5038703_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NC_007086.1\|WP_011039235.1\|5050307_5052608_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NC_007086.1\|WP_011039223.1\|5034381_5034771_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|235261
NC_007086.1\|WP_016945065.1\|5046471_5047074_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_007086.1\|WP_080506219.1\|5031581_5032442_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NC_007086.1\|WP_011039228.1\|5044288_5044996_-\|DUF4194-domain-containing-protein	unknown	unknown	gnl\|CDD\|372745
NC_007086.1\|WP_011039237.1\|5054515_5055061_-\|DUF1905-domain-containing-protein	unknown	unknown	gnl\|CDD\|378097
NC_007086.1\|WP_011039229.1\|5044982_5046452_-\|DUF3375-domain-containing-protein	unknown	unknown	gnl\|CDD\|371764
NC_007086.1\|WP_162490366.1\|5043573_5043726_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178200
NC_007086.1\|WP_011039232.1\|5047724_5047943_+\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NC_007086.1\|WP_043877850.1\|5029079_5029670_-\|biliverdin-producing-heme-oxygenase	unknown	unknown	gnl\|CDD\|350857
NC_007086.1\|WP_011039234.1\|5048859_5050311_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NC_007086.1\|WP_011039222.1\|5033929_5034139_-\|hypothetical-protein	unknown	unknown	unknown
NC_007086.1\|WP_011039236.1\|5052961_5054323_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340925

Protein	Function_ID	Function_description	E-value
NC_007086.1\|WP_016945064.1\|5047939_5048863_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	6.15277e-73
NC_007086.1\|WP_014509595.1\|5035825_5036599_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.11535e-33
NC_007086.1\|WP_011039227.1\|5039144_5043161_-\|ATP-binding-protein	gnl\|CDD\|227250	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown].	3.04333e-176
NC_007086.1\|WP_011270102.1\|5027178_5029083_-\|GAF-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	1.32475e-124
NC_007086.1\|WP_011039231.1\|5047207_5047651_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	2.23838e-14
NC_007086.1\|WP_011270104.1\|5029765_5031028_-\|tetracycline-resistance-MFS-efflux-pump	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.47172e-136
NC_007086.1\|WP_011270106.1\|5036642_5038703_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.58598e-93
NC_007086.1\|WP_011039235.1\|5050307_5052608_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	3.73506e-75
NC_007086.1\|WP_011039223.1\|5034381_5034771_-\|YchJ-family-protein	gnl\|CDD\|235261	PRK04233, PRK04233, hypothetical protein; Provisional.	3.39194e-82
NC_007086.1\|WP_016945065.1\|5046471_5047074_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	7.10518e-110
NC_007086.1\|WP_080506219.1\|5031581_5032442_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	2.55839e-110
NC_007086.1\|WP_011039228.1\|5044288_5044996_-\|DUF4194-domain-containing-protein	gnl\|CDD\|372745	pfam13835, DUF4194, Domain of unknown function (DUF4194).	3.08309e-44
NC_007086.1\|WP_011039237.1\|5054515_5055061_-\|DUF1905-domain-containing-protein	gnl\|CDD\|378097	pfam08922, DUF1905, Domain of unknown function (DUF1905). This domain is found in a set of hypothetical bacterial proteins.	1.50632e-22
NC_007086.1\|WP_011039229.1\|5044982_5046452_-\|DUF3375-domain-containing-protein	gnl\|CDD\|371764	pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.	1.98096e-147
NC_007086.1\|WP_162490366.1\|5043573_5043726_-\|hypothetical-protein	gnl\|CDD\|178200	PLN02590, PLN02590, probable tyrosine decarboxylase.	0.000624852
NC_007086.1\|WP_011039232.1\|5047724_5047943_+\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	2.48462e-12
NC_007086.1\|WP_043877850.1\|5029079_5029670_-\|biliverdin-producing-heme-oxygenase	gnl\|CDD\|350857	cd19166, HemeO-bac, heme oxygenase found in pathogenic bacteria. This subfamily contains bacterial heme oxygenase (HO, EC 1.14.14.18), where HO is part of a pathway for iron acquisition from host heme and heme products. Most of these proteins have yet to be characterized. HO catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes heme oxygenase (pa-HO) from Pseudomonas aeruginosa, an opportunistic pathogen that causes a variety of systemic infections, particularly in those afflicted with cystic fibrosis, as well as cancer and AIDS patients who are immunosuppressed. Pa-HO, expressed by the PigA gene, is critical for the acquisition of host iron since there is essentially no free iron in mammals, and is unusual since it hydroxylates heme predominantly at the delta-meso heme carbon, while all other well-studied HOs hydroxylate the alpha-meso carbon. Also included in this family is Neisseria meningitidis HO which is substantially different from the human HO, with the reaction product being ferric biliverdin IXalpha rather than reduced iron and free biliverdin IXalpha. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.	1.88018e-45
NC_007086.1\|WP_011039234.1\|5048859_5050311_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	5.92538e-66
NC_007086.1\|WP_011039236.1\|5052961_5054323_-\|MFS-transporter	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0

>NC_007086.1|WP_162490366.1|5043573_5043726_-|hypothetical-protein
MGARKANCVSNGNGNGNGNGNGNGKNSSNGSSSSSGNNANNSNSGEKKNT
>NC_007086.1|WP_011039227.1|5039144_5043161_-|ATP-binding-protein
MNSQSNLSPASPGASLFAETLAEQRAQQFRMRRLQVHNWGTFNGLTEVPIAEKGFLFVGRSGSGKSTLLDAMSALLTPPSIVDFNAAAREAERSGRDRSLVSYVRGAWADQQDSASGEIATQYLRKGATWTALVLEYRNAQGEAVSLVRLFWIAGSGNAAADVRRHYMVVPRAFDVASELEGFDLDLRKLKARLGEDVAHFDGFAGYAERFRHALGIGNDMALRLLHKTQSAKNLGDLNAFLRGFMLDEPRTFEAADRLVEDFAELDGAHHAVVTARRQVETLSPAREHHAALMALRRSVGELRELQLGVDSYREQQRLALLEARLQEVDSQDRGLAGEEGQRRESLDNHEQKLAGLEREQRAAGGEQIEELERERVRVERERDERLRRRAQIEQACRQLGTALAAGASGFAAQVAHAQGVLDGGKQHASTLDEAIAERMGERRDDERRFAEIRAELDALKKAPSSMPAPMQALRARLCDDTGIAESALPFVGELLQVREDQVAWRGAIERVLHGFAQSLLVDERHYAQVSEWVNRTHIGTRLVYFRVRRNDELHSRRVDPNALPGKLQLREHAFTEWLRNELTRRFDYACVDNAAALRNADRAITREGQVKHPGDRYEKDDRHAVNDRKRWLLGHDNRDKLKVFEREAQALAQRIASCDADVAALRKQREQDQEKRLAAHTLVERDWDEIDVGPKLQRLSDIDEQLQQLREGDSGLRALGQAIDTARTLRDQAKRTYEDVRLERAQLARERVRLEQQQAACAGRAGTAALTPTQLQGLQERLAALAPLSLDTLEAHFRVVERGLAEQLAESQGRDSRLSAQLLECFRRYCQQWPEDSGDFTVSLASADDFLARLDRLESDGLPRHEHRFFDLLQTQSKNNLLALQRHTAEAHKGIKQRMDEVNASLEQVPFNRDTILTIEVSDRRLAEVQEFQQQLRAVLSHQQTEDRALAEAQFATLRTLVARLGAQEPEARRWREQVLDVRLHVEFIGVELDAQTRAQVEIYRSGAGKSGGQRQKLATTCLAAALRYQLGGEDGELPRYCAVVLDEAFDKADNEFTALAMNIFENFGFQMVVATPLKSVMTLEPFIGGACFVEISGRHNSGVLLIEYDEQAQRLKLPERSRGEEAAAPPAEQGGAVAPGERAERAPVIAVESGHAASVHLAETTAVLVQGDAVTDGQSRGHKRTRAAATASTAAPVPAPAGKRSTSAAATSATAAPATGTADASNARRKQAATPDTPPKPTKPASTRSGSSGTPAAKRTTTAKAAAVLKASNATPAVAAKRTGKAPKRVSKPASAQQVAKPVSKSKPTAKPATAASAKSRVASTRGSAPKARSKR
>NC_007086.1|WP_011270106.1|5036642_5038703_-|TonB-dependent-siderophore-receptor
MTPLPTRRHLLFVSLFAAMPAAAQEASLLDAIVVSEKRALYRPEKAAGATRTQTPVERIPQAIQVVPRSVIDEQQLTRLVDVVANVSNVQPGGTQGNRSETFVIRGFEASSYAVDGILLNPTQNFTETVRDLANVAQVEVLKGPAAVLYGRGEPGGVINLVTLRPDAVFGGNASVQVAEHGLRRVQSSVTGPLSPTLSARLSAAVQQTGSFRDAQADGDRVFVSPSLAWRPNERLRADLDIEYTRQTSPGDRGLVAIDGVVRGPAQRSFGEPWSRNRGISRTARGRIEVDATDWLTLRQIVNHQDGDSGRGVADFTGFSADRAFLQRRAVRQDQQVRATTSQTEALARFDTGPLRHQVLAGAEYVDAHRHTDEARAPLARISVRTPVQGALPGTYVPAREIAVDARYAALYVQDQISLGERWDVLAGVRWDDVQQTTLDNGSRTREDGRRASPRLGVVWKAAPQLSLYANTSTSFRPRSASVFAGGSAPPETGRQYELGMKSALLDNRVLATVAAFQITKDNVATADPNNDGFVLVTGQQRVRGLELDVTGELTPNWRLILGAGYLDAQVTRDTVIASGNRLRGVPRVSASLWSTYHVASGPLYGLTLGAGAVHVGEREGDLANSYRIPGYTRFDASAAYRFGGRYQLALLLRNLGNRFYIEQPVTQTTNYPGAPRTLSATLSMEF
>NC_007086.1|WP_014509595.1|5035825_5036599_+|TSUP-family-transporter
MLELIPTELPWLLCIAFVAGLVDAAVGGGGLIQLPGLFATLPQQAPSLILGTNKFSAMFGTGASAWRYARNVRFPWRPVLYATAAAFTFSFLGATAVSLLPKQAVRPLILVLLIAMLGYTLIKKDFGALHRPRAIGRRELVTALAMGAAIGFYDGFFGPGTGSFLIFLFIRFFGLDFLRASAAAKVVNLATNLAALSFFLPTGQVMLAVGVPMAAANVAGAVAGTRLALRGGTPLIRQLFLVLVVVLIGKMGWDLLH
>NC_007086.1|WP_011039223.1|5034381_5034771_-|YchJ-family-protein
MSPSTPTDPCPCGRAAGYAQCCGQYHAGAAAPDAETLMRARYSAYVRRNVDYLLASWHPSTRPAELALDEGGRTTWLGLNVQRAIATGADTAEVVFLARYRIGGGSAVRMTEHSRFVREDGHWYYLDAR
>NC_007086.1|WP_011039222.1|5033929_5034139_-|hypothetical-protein
MATFNLWQWLLLALVVFAIVLPTLVAAAMIWFGPRHDTPRLPRSVRRSGDATGATPALSLLSGITGDGS
>NC_007086.1|WP_080506219.1|5031581_5032442_-|D-hexose-6-phosphate-mutarotase
MSDVTGLRTGDFHGFPSLLIDTPYSTAAISLFGGQLLSFVPKGGQDVMWLSPTAKQPPTPIRGGAPVCWPYFGRQDQTGDVPAHGFVRTVPWQLTESRREDDGTLVLTLTPPTFDDLALRLHMTLRIGRTLEQRLVTENVSKAPVRFTQALHNYFRVGDALKVSVQGLDGLDYLDKYENYAIAHRQQGDWSLRDPRDPGRSDRIYTNAGGHYTLTDPVLGRRIDIRTEGSRSLVAWNPGEDAASKMADVGTGWRDYVCLEAANAGPDVIELAPGASHTLGQTISVE
>NC_007086.1|WP_011270104.1|5029765_5031028_-|tetracycline-resistance-MFS-efflux-pump
MSISPDSASAPAPGRRRAALIFIFITVLIDVLSFGVIIPVLPDLVRQFTGGDYAAAAGWIGWFGFLFAAIQFVCSPLQGTLSDRYGRRPVILLSCLGLGLDFILMALAHTLPMLLLARVISGVCSASFSTANAYIADVTPADKRAGAFGMLGAAFGIGFVAGPLIGGWLGSIGLRWPFWFAAGLALLNVLYGWFVLPESLPPERRTARLDWSHANPFGALKLLRRYPQVFGLASVVFLANLAHYVYPSIFVLFASYQYHWGPREVSWVLAGVGVCSIIVNAVLVGRIVRWLGERRALLLGLGCGVIGFVIYGLADSGHTFLLGVPISAFWAVAAPAAQALITREVGADAQGRVQGALTSLVSLGGIAGPLLFANVFAWFIGSGAPLHLPGAPWLLAGLLLAAGWFMAWKRAGRSPALAQG
>NC_007086.1|WP_043877850.1|5029079_5029670_-|biliverdin-producing-heme-oxygenase
MRSDTPVAPLSAALALRHATQEAHTRVESVPLMQALGQGHIDADTYAQVLRRHHRLLAGFEEQLSDWLVTLVGSGWQYRRRVPALREDLRVLGQPVDAAVPPPASSEAARWGMLYVIEGSQLGGRVIARMLRKRQPGLAHALHYFELADEDPAGWRRFQAVLEQRLQSAAARADAIAGAQAMFAHFHTCLAAEARP
>NC_007086.1|WP_011270102.1|5027178_5029083_-|GAF-domain-containing-protein
MSTATNPLDLDVCAREPIHIPGLIQPYGVLLVIDPADGRIVQASTTAADLLGVPMAALLGMPYTQVLTLPEAQPFAVDDQPQHLMHAEVRFPQRATPPASAWVAAWHLYPQQWLVEMEPRDARLLDVTLREAMPLLRSVERDPGIAEAAVRVAKGLRSLIGFDRVMIYRFDEEWNGDIIAEARKPELEAYLGLHYPASDIPAQARALYLRNRVRQIADVGYQPSPIQPTVHPQLGTPVDLSDVSLRSVSPVHLEYLANMGVTATLVASIVVNDALWGLISCHHYSPHFTNHAMRDVTDAVARTLAGRIGALQAVARARLESVLLTVREKLITDFNDAEHMTVELLDDMAPDLMDVVDADGVAIFHGNDISRHGTTPDVAALRRIRDHIESEHHEALREDAVGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQIQQIKWAGNPQLAKLEDIPNSRLSPRKSFDLWQQTVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGTANAAHRLLFVNTAFADVCGSDVAELIGRELQTLYASDAPRANVELLQDALRNGRAAYVTLPLQVSDGAPVYRQFHLEPLPSPSGVTAHWLLQLRDPE
>NC_007086.1|WP_011039228.1|5044288_5044996_-|DUF4194-domain-containing-protein
MNWSEQAALDAHDDDDADAHASALRLPASDAASAAQGGALFLGDTGTLPFDARRALCQLLAGPSIDAQRHGGLWPALLRNEVAVRQVLCELFLELVLDREGGVAFTRQADTAELESPTLLRSAPLTFIESVLLLFLRQQLAEADTRGERAVVDEAQLVEALSVYEKNVSTDRAGFTRRVMTAIGKMRENQLLSRLRGSEERYEVSPVLKLLFSAEDVQALVVAYRELREGEVAAD
>NC_007086.1|WP_011039229.1|5044982_5046452_-|DUF3375-domain-containing-protein
MKHQARIAGYRHLRDQPAWKLLAADHAPELIGLLQTLLMDGERRLPSAVLHARLQRQLDALRGDELSRELPRTAQAYLAHWLAQGWLERRLPEGAAEEEYELSRAATQAIRFIAGLRESGSSATESRLSLVIQQLVQLAGQTEADPDARLAALRAERERIDAEIERVAAGRVGALDGKRALERTRDLIHLSDELAEDFHRVRDDFEQLNRQFRERIIDDEGARGDVLEQLFNGVDVIADSEAGRTFEAFWSLLNDTQQSSQLDQALDALLARGFARKLDRRERAFLRGLTGTLLERGGEVHTVMQHFARSLRGFVQSRGYLEQRRLNQLLKQAQGEALHLRESLHATTATGYTQALSGSRLRSLSQWRLHDPRLTQVDGRVYAADAAEISLDSVGDLVAQSEIDVRSLRRDLHALLGERPRLTIGDALQQRPAVQGLGSVIGYLSLGTRHGLVIDGHMETVQWEGGDGTLRRARIPLVWFTREKRNELV
>NC_007086.1|WP_016945065.1|5046471_5047074_-|GTP-cyclohydrolase-I-FolE
MSQSDQPDSSVTQAQAEEAVRTLLRWAGEDPAREGLLDTPRRVAEAYGDWFSGYREEPRAYLERTFEEVAGYDELIVLRDISYESHCEHHMAPIIGKVHVGYLPRGKVVGISKLARVVESYARRFQVQEKMTAQIAQCIQDVLQPRGVGVVVEGAHECMTTRGIHKRGVSMVTSKMLGSFREDARTRAEFLQFIEVGGKR
>NC_007086.1|WP_011039231.1|5047207_5047651_+|MarR-family-transcriptional-regulator
MTTYLPPRAQLSAGLLVASRQWQRLADQAFGEFGLSSACTGPLLMIGRSGGGIRQVALAQQLGMEGPSLVRLLDKLCAQALVRREADSSDRRANQLWLTEAGQALVGQIEARLVALRAEVFGALSDAEVEVVLKLWGLIAEANARLP
>NC_007086.1|WP_011039232.1|5047724_5047943_+|DUF1656-domain-containing-protein
MWPMYGEFSLYGVFVPTLLALMTLAYLLNSAVGALLTRAGAYRHIWHPALFNLALYIALLGGLFSLMRWMQS
>NC_007086.1|WP_016945064.1|5047939_5048863_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKLIKTAGPALLTLAMVVVAAVVLQHLWRYYMDAPWTRDAHVGADVVQVAPDVSGLVEQVAVADNQAVTRGQLLFVVDRARYAIALEQARAALAERQATLTQLRREIARDRSLQDLVAAEDAEVRRSNVQKAQAAVATAQSAVDLAQLNLDRTEVRSPADGHISDRTVRVGDYVSAGRPVVAVLDTGSFRVDGYFEETRLQGVHPGQRVDVHLMGEPVTLHGHVQSIAAGIEDRYRTGSAGALPNVTPAFDWVRLAQRIPVRIALDAVPAQVQLIAGRTATVTILPDAARPAAATAPARVQAKAAP
>NC_007086.1|WP_011039234.1|5048859_5050311_+|efflux-transporter-outer-membrane-subunit
MSRAALRHLGLAAALTALSACSTVGPDYALPREAVYNRPAANAPFLDTGNAQVQPGAPLPARWWALYQDPMLDGLVEQALRDNVELKVASANLRRAAAVYEQALDAGGFDYEVEAGVSRAQISAEAFLQEEKLPVFNLADGKFGVSYQFDLFGKLQHGAEAAHADTQAAQAAIDLARVSVAAQVAGSYVEICNANHELHVAEHSLQLQQRSRTVTQRLISAGRGTPPDLARATAQVAMLEAALPPLRARRQAAGYALAALLGKTPGELPAGVDSCAHAPALQQPIPIGDGRTLLARRPDVRQAERRLAAATARIGVATAELYPDIRLGGSIGATGLLADIGEPATHAWSIGPLISWTLPSSGAHARVRATEAGADAAVAQFDHTVLQALREVQTTLSRYAQDLDRLRLLEQAQQQAELASSQNRRLYQGGRTPYLSSLDAERTLATADMTLADAQAQVSKDQIQLFLALGGGWEPATDATAAR
>NC_007086.1|WP_011039235.1|5050307_5052608_+|FUSC-family-protein
MNALLRDRQAWLFSAKTFAAAIAALYVGLAGNLSRPYWAMATVYIVSQPLLGPTRAKGVYRVLGTLLAGAATLVMLPNLVETPLLLSAAMALWLSACLFLALLNRGPRGYAFLLAGYTTAFIGFPAVTAPEGIFDTVVARSEEIILGTVMAVLFAALVFPASVRPMLTARIGNWMQDAAQWCRQVLQRGPAQAPRNRLAADLVQFEALIAFVRHDDPRHAGAAPALEHLRARMLLLLPVLSSIADRLDALHAASRALPGELIALLEDIGAWVERAGPDAAQTAAEQPEMISAGDADADAAVASLRARIAALRPAVDDDLQHLLLASLLLRLEELLDLWQDCRALESALLQGTALPALPAAARDRAVPETDAGAGAEVRLRSTVPQHVGKSGGETSPGAPAHADTAPSAASSQPASLLQRLTRSSSRLSTDAPATAGDARHIDYGMAAFSALSAGFALMAYCVLWIGIDWEGGGNGAMMAAVTAAFFAAQDDPAPSMVSFLTWAVVASVVAGIYLFGIFPAIHDFPMLVLVLAAVFLPLGALLHRPKTMLIALPLVVNLTALLSLQNTYNANIQSFVNAAVAMVLGIGFAVVLTRLFRSVGAEWSARRLVRQGWRTLAAAADGRGAQDRHQFAARMLDLLGLLAPRLAVAPPGSDLASVDMLTEIRVGLNILQLRRARHGLPPASIAAVDAILADVATHYRQQVAHKRPLPGPDTLRTRLDASLARVGQVPAGTHRDEALLGLIGLRSSLFVDATVPDNATGHPQLA
>NC_007086.1|WP_011039236.1|5052961_5054323_-|MFS-transporter
MSAPPSSPIAAGSGAAPGSLRRSVSNTLKGSAGNLVEWYDVYVYSVFATYFESQFFSKEDKNATMFVWAIFAMTFLMRPIGAWYFGRFADRYGRRLALTISVSMMALCSFVIAITPTVSTIGIAAPIILLLARLLQGFATGGEYGTSATYMSEAAIPGRRGFLSSFHYVTLVGGHVLAQTTLLVMLHFFDAPQVSEWGWRVAFGLGGIGALVVFWLRQTMDESLSSESIADSRTGKAKASGSMRELFVNQWRPLLLCFLITAGGTIAFYTYSVTGPKMIQTAFAGGDVMAGTIINLVALTVLMLMQPVGGWLSDIVGRKSLLVFFGIGGVLYTWFLVMELPKQTDWLTAFAILTVGFVILTGYTSINAVVKAELFPTHVRALGVGLGYALANSAFGGTAPLLYQASLKTGHVSEFVIYATAVIAVSLVVYIFFLTNKGSNWLDHEDVMHTRKR
>NC_007086.1|WP_011039237.1|5054515_5055061_-|DUF1905-domain-containing-protein
MGTAAIRFTTTLLQPATPADATWVFLVLPANASGALPTRSMVSVRGSLAGHPLQATLQPDGQGGHWLKLDAALQRAAGVAAGDTVTLEIAPVEVEPEPVVPDDLHAALAAHPAAQATWNDITAVARRDWIFWVTSGKKAETRSKRIATACDMLGSGKRRACCFDRSGMYSKSLSAPTPKAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_007086_1	1.20\|613996\|25\|NC_007086\|CRISPRCasFinder	613996-614020	25	NC_007086.1	614140-614164	1	0.96
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	NC_007086.1	614236-614260	2	0.92
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	NC_007086.1	614524-614548	2	0.92
NC_007086_1	1.19\|613948\|25\|NC_007086\|CRISPRCasFinder	613948-613972	25	NC_007086.1	614092-614116	2	0.92
NC_007086_1	1.20\|613996\|25\|NC_007086\|CRISPRCasFinder	613996-614020	25	NC_007086.1	614716-614740	2	0.92
NC_007086_1	1.21\|614044\|25\|NC_007086\|CRISPRCasFinder	614044-614068	25	NC_007086.1	614620-614644	2	0.92

1. spacer 1.20|613996|25|NC_007086|CRISPRCasFinder matches to position: 614140-614164, mismatch: 1, identity: 0.96

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcacgcaagggcagcgac	Protospacer
*********************.***

2. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to position: 614236-614260, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggcgacagttcg	Protospacer
******.******** *********

3. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to position: 614524-614548, mismatch: 2, identity: 0.92

ccagacttccggcggggacagttcg	CRISPR spacer
ccagacctccggcggggaaagttcg	Protospacer
******.*********** ******

4. spacer 1.19|613948|25|NC_007086|CRISPRCasFinder matches to position: 614092-614116, mismatch: 2, identity: 0.92

gcagacctcgggtagcgagagttcg	CRISPR spacer
gcagacctccggtggcgagagttcg	Protospacer
********* ***.***********

5. spacer 1.20|613996|25|NC_007086|CRISPRCasFinder matches to position: 614716-614740, mismatch: 2, identity: 0.92

gcagaccgcacgcaagggcagtgac	CRISPR spacer
gcagaccgcgcgtaagggcagtgac	Protospacer
*********.**.************

6. spacer 1.21|614044|25|NC_007086|CRISPRCasFinder matches to position: 614620-614644, mismatch: 2, identity: 0.92

ctcgaccgccggtgcggacagcacc	CRISPR spacer
ctccaccgccggtgccgacagcacc	Protospacer
*** *********** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007086_1	1.1\|613084\|25\|NC_007086\|CRISPRCasFinder	613084-613108	25	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	51121-51145	3	0.88
NC_007086_1	1.2\|613132\|25\|NC_007086\|CRISPRCasFinder	613132-613156	25	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	250941-250965	3	0.88
NC_007086_1	1.2\|613132\|25\|NC_007086\|CRISPRCasFinder	613132-613156	25	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	460308-460332	3	0.88
NC_007086_1	1.2\|613132\|25\|NC_007086\|CRISPRCasFinder	613132-613156	25	NZ_CP023450	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence	132960-132984	3	0.88
NC_007086_1	1.2\|613132\|25\|NC_007086\|CRISPRCasFinder	613132-613156	25	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	175194-175218	3	0.88
NC_007086_1	1.2\|613132\|25\|NC_007086\|CRISPRCasFinder	613132-613156	25	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	41928-41952	3	0.88
NC_007086_1	1.2\|613132\|25\|NC_007086\|CRISPRCasFinder	613132-613156	25	NZ_CP041018	Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence	158454-158478	3	0.88
NC_007086_1	1.3\|613180\|25\|NC_007086\|CRISPRCasFinder	613180-613204	25	NZ_CP010990	Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence	69855-69879	3	0.88
NC_007086_1	1.3\|613180\|25\|NC_007086\|CRISPRCasFinder	613180-613204	25	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	16607-16631	3	0.88
NC_007086_1	1.8\|613420\|25\|NC_007086\|CRISPRCasFinder	613420-613444	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	378085-378109	3	0.88
NC_007086_1	1.8\|613420\|25\|NC_007086\|CRISPRCasFinder	613420-613444	25	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	143684-143708	3	0.88
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	243232-243256	3	0.88
NC_007086_1	1.14\|613708\|25\|NC_007086\|CRISPRCasFinder	613708-613732	25	NC_015851	Acidithiobacillus caldus SM-1 megaplasmid, complete sequence	152062-152086	3	0.88
NC_007086_1	1.14\|613708\|25\|NC_007086\|CRISPRCasFinder	613708-613732	25	NZ_CP026329	Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence	107106-107130	3	0.88
NC_007086_1	1.14\|613708\|25\|NC_007086\|CRISPRCasFinder	613708-613732	25	NZ_CP005987	Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence	163970-163994	3	0.88
NC_007086_1	1.15\|613756\|25\|NC_007086\|CRISPRCasFinder	613756-613780	25	NC_015382	Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence	69011-69035	3	0.88
NC_007086_1	1.15\|613756\|25\|NC_007086\|CRISPRCasFinder	613756-613780	25	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	911990-912014	3	0.88
NC_007086_1	1.18\|613900\|25\|NC_007086\|CRISPRCasFinder	613900-613924	25	NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	27409-27433	3	0.88
NC_007086_1	1.18\|613900\|25\|NC_007086\|CRISPRCasFinder	613900-613924	25	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	209397-209421	3	0.88
NC_007086_1	1.18\|613900\|25\|NC_007086\|CRISPRCasFinder	613900-613924	25	NZ_CP005087	Sphingobium sp. TKS plasmid pTK3, complete sequence	11418-11442	3	0.88
NC_007086_1	1.18\|613900\|25\|NC_007086\|CRISPRCasFinder	613900-613924	25	NZ_CP005088	Sphingobium sp. TKS plasmid pTK4, complete sequence	65195-65219	3	0.88
NC_007086_1	1.21\|614044\|25\|NC_007086\|CRISPRCasFinder	614044-614068	25	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	50549-50573	3	0.88
NC_007086_1	1.1\|613084\|25\|NC_007086\|CRISPRCasFinder	613084-613108	25	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	859763-859787	4	0.84
NC_007086_1	1.1\|613084\|25\|NC_007086\|CRISPRCasFinder	613084-613108	25	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	461680-461704	4	0.84
NC_007086_1	1.3\|613180\|25\|NC_007086\|CRISPRCasFinder	613180-613204	25	NZ_CP046256	Sphingobium sp. CAP-1 plasmid p3, complete sequence	125194-125218	4	0.84
NC_007086_1	1.3\|613180\|25\|NC_007086\|CRISPRCasFinder	613180-613204	25	NZ_CP022748	Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence	107885-107909	4	0.84
NC_007086_1	1.3\|613180\|25\|NC_007086\|CRISPRCasFinder	613180-613204	25	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	59811-59835	4	0.84
NC_007086_1	1.3\|613180\|25\|NC_007086\|CRISPRCasFinder	613180-613204	25	MN204501	Gordonia phage Chikenjars, complete genome	29380-29404	4	0.84
NC_007086_1	1.3\|613180\|25\|NC_007086\|CRISPRCasFinder	613180-613204	25	NC_048793	Gordonia phage Kenosha, complete genome	29930-29954	4	0.84
NC_007086_1	1.5\|613276\|25\|NC_007086\|CRISPRCasFinder	613276-613300	25	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	351573-351597	4	0.84
NC_007086_1	1.5\|613276\|25\|NC_007086\|CRISPRCasFinder	613276-613300	25	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	52264-52288	4	0.84
NC_007086_1	1.6\|613324\|25\|NC_007086\|CRISPRCasFinder	613324-613348	25	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	395981-396005	4	0.84
NC_007086_1	1.9\|613468\|25\|NC_007086\|CRISPRCasFinder	613468-613492	25	NC_008537	Arthrobacter sp. FB24 plasmid 1, complete sequence	94006-94030	4	0.84
NC_007086_1	1.9\|613468\|25\|NC_007086\|CRISPRCasFinder	613468-613492	25	NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	37310-37334	4	0.84
NC_007086_1	1.9\|613468\|25\|NC_007086\|CRISPRCasFinder	613468-613492	25	NC_008539	Arthrobacter sp. FB24 plasmid 3, complete sequence	33091-33115	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	68382-68406	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	186792-186816	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	315946-315970	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP029234	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence	73358-73382	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP035035	Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence	41925-41949	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1577504-1577528	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	68399-68423	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP045095	Streptomyces sp. GY16 plasmid unnamed1, complete sequence	1473-1497	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	135413-135437	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1505773-1505797	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	70068-70092	4	0.84
NC_007086_1	1.13\|613660\|25\|NC_007086\|CRISPRCasFinder	613660-613684	25	MN062720	Microbacterium phage FuzzBuster, complete genome	23698-23722	4	0.84
NC_007086_1	1.17\|613852\|25\|NC_007086\|CRISPRCasFinder	613852-613876	25	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	156372-156396	4	0.84
NC_007086_1	1.18\|613900\|25\|NC_007086\|CRISPRCasFinder	613900-613924	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5969600-5969624	4	0.84
NC_007086_1	1.18\|613900\|25\|NC_007086\|CRISPRCasFinder	613900-613924	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1420670-1420694	4	0.84
NC_007086_1	1.18\|613900\|25\|NC_007086\|CRISPRCasFinder	613900-613924	25	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	152689-152713	4	0.84
NC_007086_1	1.21\|614044\|25\|NC_007086\|CRISPRCasFinder	614044-614068	25	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	118257-118281	4	0.84
NC_007086_1	1.21\|614044\|25\|NC_007086\|CRISPRCasFinder	614044-614068	25	NZ_CP021815	Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence	49071-49095	4	0.84
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	694675-694699	5	0.8
NC_007086_1	1.11\|613564\|25\|NC_007086\|CRISPRCasFinder	613564-613588	25	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	123372-123396	5	0.8
NC_007086_1	1.14\|613708\|25\|NC_007086\|CRISPRCasFinder	613708-613732	25	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	281685-281709	5	0.8
NC_007086_1	1.14\|613708\|25\|NC_007086\|CRISPRCasFinder	613708-613732	25	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	426616-426640	5	0.8
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	40969-40993	5	0.8
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	MK882885	Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence	38468-38492	5	0.8
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	16093-16117	5	0.8
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	37490-37514	5	0.8
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	21314-21338	5	0.8
NC_007086_1	1.16\|613804\|25\|NC_007086\|CRISPRCasFinder	613804-613828	25	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	54715-54739	5	0.8
NC_007086_1	1.21\|614044\|25\|NC_007086\|CRISPRCasFinder	614044-614068	25	NZ_CP025015	Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence	297223-297247	5	0.8

1. spacer 1.1|613084|25|NC_007086|CRISPRCasFinder matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 3, identity: 0.88

gctcactggcgccgatcagagtcag	CRISPR spacer
acacacgggcgccgatcagagtcag	Protospacer
.* *** ******************

2. spacer 1.2|613132|25|NC_007086|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

3. spacer 1.2|613132|25|NC_007086|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgagaccgcggcgaagggcagcgaa	Protospacer
*********** *** ********.

4. spacer 1.2|613132|25|NC_007086|CRISPRCasFinder matches to NZ_CP023450 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

5. spacer 1.2|613132|25|NC_007086|CRISPRCasFinder matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

6. spacer 1.2|613132|25|NC_007086|CRISPRCasFinder matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

7. spacer 1.2|613132|25|NC_007086|CRISPRCasFinder matches to NZ_CP041018 (Sphingobium fuliginis ATCC 27551 plasmid pSF1, complete sequence) position: , mismatch: 3, identity: 0.88

cgagaccgcggggaacggcagcgag	CRISPR spacer
cgcgaccgcggtgaacggcagcgtg	Protospacer
** ******** *********** *

8. spacer 1.3|613180|25|NC_007086|CRISPRCasFinder matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatccaacggcatc	Protospacer
****************.**.***.*

9. spacer 1.3|613180|25|NC_007086|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcttggccggatccgccagcagc	Protospacer
**** ************ ***** *

10. spacer 1.8|613420|25|NC_007086|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

11. spacer 1.8|613420|25|NC_007086|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 3, identity: 0.88

ccaaaccgcgcagaacggcagcgac	CRISPR spacer
cctgaccgcgcagaacggcagcgaa	Protospacer
** .********************

12. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 3, identity: 0.88

gcagacggcgcaggacggcagcgac	CRISPR spacer
ggagacggtgcaggacggcagctac	Protospacer
* ******.************* **

13. spacer 1.14|613708|25|NC_007086|CRISPRCasFinder matches to NC_015851 (Acidithiobacillus caldus SM-1 megaplasmid, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

14. spacer 1.14|613708|25|NC_007086|CRISPRCasFinder matches to NZ_CP026329 (Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

15. spacer 1.14|613708|25|NC_007086|CRISPRCasFinder matches to NZ_CP005987 (Acidithiobacillus caldus ATCC 51756 plasmid megap mpAca1.1, complete sequence) position: , mismatch: 3, identity: 0.88

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ccaaaccgcccataccggcaccgat	Protospacer
***********.******** ***.

16. spacer 1.15|613756|25|NC_007086|CRISPRCasFinder matches to NC_015382 (Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence) position: , mismatch: 3, identity: 0.88

ctccaccgctggtgcggacagcacg	CRISPR spacer
ccccgccgctggtgcggacatcacg	Protospacer
*.**.*************** ****

17. spacer 1.15|613756|25|NC_007086|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 3, identity: 0.88

ctccaccgctggtgcggacagcacg	CRISPR spacer
cgccaccgctggggcggacagcccg	Protospacer
* ********** ********* **

18. spacer 1.18|613900|25|NC_007086|CRISPRCasFinder matches to NZ_CP047174 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggctcggacagcact	Protospacer
******** **** **********.

19. spacer 1.18|613900|25|NC_007086|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagcgac	Protospacer
******** *************. *

20. spacer 1.18|613900|25|NC_007086|CRISPRCasFinder matches to NZ_CP005087 (Sphingobium sp. TKS plasmid pTK3, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

21. spacer 1.18|613900|25|NC_007086|CRISPRCasFinder matches to NZ_CP005088 (Sphingobium sp. TKS plasmid pTK4, complete sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccgccggcgccgccagcaac	Protospacer
*************** * ***** *

22. spacer 1.21|614044|25|NC_007086|CRISPRCasFinder matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 3, identity: 0.88

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cccgaccgccggtgcggacagccgc	Protospacer
*.********************  *

23. spacer 1.1|613084|25|NC_007086|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

24. spacer 1.1|613084|25|NC_007086|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.84

gctcactggcgccgatcagagtcag	CRISPR spacer
gctcgctggcgccgaccagagtctc	Protospacer
****.**********.*******

25. spacer 1.3|613180|25|NC_007086|CRISPRCasFinder matches to NZ_CP046256 (Sphingobium sp. CAP-1 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

26. spacer 1.3|613180|25|NC_007086|CRISPRCasFinder matches to NZ_CP022748 (Sphingobium hydrophobicum strain C1 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

27. spacer 1.3|613180|25|NC_007086|CRISPRCasFinder matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
cggcgtggccggatcggacagccgg	Protospacer
*************** ******

28. spacer 1.3|613180|25|NC_007086|CRISPRCasFinder matches to MN204501 (Gordonia phage Chikenjars, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcaggatccaacagcacc	Protospacer
  ******* ******.********

29. spacer 1.3|613180|25|NC_007086|CRISPRCasFinder matches to NC_048793 (Gordonia phage Kenosha, complete genome) position: , mismatch: 4, identity: 0.84

cggcgtggccggatccgacagcacc	CRISPR spacer
gtgcgtggcgggatccaacagcacc	Protospacer
  ******* ******.********

30. spacer 1.5|613276|25|NC_007086|CRISPRCasFinder matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

31. spacer 1.5|613276|25|NC_007086|CRISPRCasFinder matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

acagaccgcccgcaatggcagcgag	CRISPR spacer
gctgaccgcccgcgatggcagcgat	Protospacer
.* **********.**********

32. spacer 1.6|613324|25|NC_007086|CRISPRCasFinder matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.84

ggaaaccgccggtgcagacagctcg	CRISPR spacer
cagaaccgccggtgcagacaggtcg	Protospacer
 ..****************** ***

33. spacer 1.9|613468|25|NC_007086|CRISPRCasFinder matches to NC_008537 (Arthrobacter sp. FB24 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

34. spacer 1.9|613468|25|NC_007086|CRISPRCasFinder matches to NC_008538 (Arthrobacter sp. FB24 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

35. spacer 1.9|613468|25|NC_007086|CRISPRCasFinder matches to NC_008539 (Arthrobacter sp. FB24 plasmid 3, complete sequence) position: , mismatch: 4, identity: 0.84

cagcacggcgggcaccgatagctcg	CRISPR spacer
cggcgcggcgggcaccgatagctgc	Protospacer
*.**.******************

36. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

37. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgccggacggcagcgcc	Protospacer
  ********* *********** *

38. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

39. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP029234 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcaggcggcgcaggacggcaggatc	Protospacer
****.**************** . *

40. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP035035 (Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gcagacggcccagcacggcagcgga	Protospacer
********* *** *********.

41. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

42. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagccggcgcaggacggcatcgac	Protospacer
  ** *************** ****

43. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP045095 (Streptomyces sp. GY16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
gaggacggcgcaggacgccagcgag	Protospacer
* .************** ******

44. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgcc	Protospacer
  ************** ****** *

45. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

46. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 4, identity: 0.84

gcagacggcgcaggacggcagcgac	CRISPR spacer
ccagacggcgcaggacgtcggcgag	Protospacer
 **************** *.****

47. spacer 1.13|613660|25|NC_007086|CRISPRCasFinder matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 4, identity: 0.84

gcagacatccggcaacgacagctcg	CRISPR spacer
cgagacatccggcatcgacaggtcg	Protospacer
  ************ ****** ***

48. spacer 1.17|613852|25|NC_007086|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

ccaaaccgcgcgcaagggtagcgac	CRISPR spacer
tgaaaacgcgcgcaagggtagcgtc	Protospacer
. *** ***************** *

49. spacer 1.18|613900|25|NC_007086|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
cagcaccgccgacgcggacagcacc	Protospacer
*   *******.*************

50. spacer 1.18|613900|25|NC_007086|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctcgaccggcggcgcggacagggac	Protospacer
******** ************ . *

51. spacer 1.18|613900|25|NC_007086|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggcgcggacagcacc	CRISPR spacer
ctccatcgccggcgcggacagcaaa	Protospacer
*** *.*****************

52. spacer 1.21|614044|25|NC_007086|CRISPRCasFinder matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
ggcgaccgcctgtgcggccagcacc	Protospacer
  ******** ****** *******

53. spacer 1.21|614044|25|NC_007086|CRISPRCasFinder matches to NZ_CP021815 (Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence) position: , mismatch: 4, identity: 0.84

ctcgaccgccggtgcggacagcacc	CRISPR spacer
cacgaccgccggtgcggacagacct	Protospacer
* *******************  *.

54. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgcgacggcgcaggacggcagcaag	Protospacer
   *******************.*

55. spacer 1.11|613564|25|NC_007086|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 5, identity: 0.8

gcagacggcgcaggacggcagcgac	CRISPR spacer
cgagacggcgcaggaccgcagcgct	Protospacer
  ************** ****** .

56. spacer 1.14|613708|25|NC_007086|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
aggaaccgcccgtaccggcagcccc	Protospacer
  .*******************  *

57. spacer 1.14|613708|25|NC_007086|CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 5, identity: 0.8

ccaaaccgcccgtaccggcagcgac	CRISPR spacer
ggaatccgcccgtaccggcagcgtt	Protospacer
  ** ****************** .

58. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

59. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to MK882885 (Pseudomonas aeruginosa plasmid YLH6_p3, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

60. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

61. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

62. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

63. spacer 1.16|613804|25|NC_007086|CRISPRCasFinder matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 5, identity: 0.8

ccagacttccggcggggacagttcg	CRISPR spacer
gtgcacttccggcggggccagttcg	Protospacer
 .. ************* *******

64. spacer 1.21|614044|25|NC_007086|CRISPRCasFinder matches to NZ_CP025015 (Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence) position: , mismatch: 5, identity: 0.8

ctcgaccgccggtgcggacagcacc	CRISPR spacer
aaagaccgccggtgcggacagaact	Protospacer
   ****************** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

799479 : 838670

Shigella_phage(33.33%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087942080.1\|799479_800624_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-88	58.8
WP_011038588.1\|801119_801671_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_011038587.1\|801789_803157_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	3.6e-43	29.8
WP_011038586.1\|803414_803714_-	hypothetical protein	NA	NA	NA	NA
WP_011038585.1\|803932_804388_-	nucleoside deaminase	NA	NA	NA	NA
WP_011038584.1\|804384_804885_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011038583.1\|804910_806002_-	HlyD family secretion protein	NA	NA	NA	NA
WP_011038582.1\|805998_807648_-	MFS transporter	NA	NA	NA	NA
WP_014509029.1\|807735_808497_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_012437339.1\|808687_809578_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_029628849.1\|809652_811602_+	leukotriene A4 hydrolase C-terminal domain-containing protein	NA	NA	NA	NA
WP_011038578.1\|812227_812947_+	hypothetical protein	NA	NA	NA	NA
WP_014509025.1\|812950_813574_+	HAD family hydrolase	NA	NA	NA	NA
WP_087942080.1\|816193_817337_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-88	58.8
WP_011038574.1\|817664_819419_+	quinoprotein dehydrogenase-associated putative ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_043877868.1\|819444_820086_+	c-type cytochrome	NA	NA	NA	NA
WP_011038572.1\|820082_821129_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_011038571.1\|821163_822270_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	9.2e-29	28.5
WP_011038570.1\|822280_824665_+	TonB-dependent receptor	NA	NA	NA	NA
WP_087942922.1\|824966_825765_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_019237253.1\|826158_828132_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011038567.1\|828811_829744_-	carbohydrate kinase family protein	NA	NA	NA	NA
WP_011269502.1\|830020_831067_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	2.7e-06	21.2
WP_011269503.1\|831399_832749_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_011038565.1\|832745_833231_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_011038564.1\|833234_835295_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_011038563.1\|835291_836410_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_138922025.1\|837568_838670_+\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	1.3e-43	41.4

DBSCAN-SWA_2

2530725 : 2543342

Xanthomonas_phage(62.5%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011269752.1\|2530725_2531376_+	conjugal transfer protein TrbP	A0A077JBM8	Xanthomonas_phage	4.0e-48	49.1
WP_011269753.1\|2531324_2531789_-	DUF3693 domain-containing protein	NA	NA	NA	NA
WP_043877755.1\|2532173_2533115_+	replication initiation protein	A0A077JDC0	Xanthomonas_phage	8.5e-177	96.8
WP_011037222.1\|2533111_2533408_+	G5P family DNA-binding protein	A0A1W6DXU2	Xanthomonas_phage	2.1e-44	90.7
WP_019237633.1\|2533411_2533663_+	hypothetical protein	NA	NA	NA	NA
WP_005918131.1\|2533690_2533819_+\|coat	Phi-Lf prophage-derived major coat protein	NA	NA	NA	NA
WP_175422440.1\|2534447_2534768_+	hypothetical protein	NA	NA	NA	NA
WP_019237631.1\|2534761_2535001_+	hypothetical protein	Q9XJ91	Xanthomonas_phage	9.1e-35	92.4
WP_011037230.1\|2535011_2535332_+\|coat	minor coat protein	Q4LAU3	Stenotrophomonas_phage	5.0e-20	44.2
WP_011037227.1\|2535333_2536656_+	zonular occludens toxin domain-containing protein	Q4LAU4	Stenotrophomonas_phage	5.3e-132	56.0
WP_075272161.1\|2536675_2536984_-	chloride channel protein	A0A1W6DXV7	Xanthomonas_phage	1.0e-46	90.3
WP_175422428.1\|2537050_2537422_-	hypothetical protein	Q38057	Xanthomonas_phage	8.8e-61	100.0
WP_011269755.1\|2537562_2537889_+	hypothetical protein	Q38057	Xanthomonas_phage	3.9e-20	60.8
WP_075272161.1\|2537955_2538264_+	chloride channel protein	A0A1W6DXV7	Xanthomonas_phage	1.0e-46	90.3
WP_011269756.1\|2538283_2539606_-	zonular occludens toxin domain-containing protein	Q4LAU4	Stenotrophomonas_phage	5.8e-131	56.3
WP_011269757.1\|2539607_2539928_-\|coat	minor coat protein	Q4LAU3	Stenotrophomonas_phage	3.5e-21	44.2
WP_016944907.1\|2539938_2540178_-	hypothetical protein	Q9XJ91	Xanthomonas_phage	1.1e-35	94.9
WP_005918131.1\|2541084_2541213_-\|coat	Phi-Lf prophage-derived major coat protein	NA	NA	NA	NA
WP_016944909.1\|2541240_2541492_-	hypothetical protein	NA	NA	NA	NA
WP_011269760.1\|2541495_2541792_-	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	1.9e-26	66.3
WP_043877756.1\|2541788_2542898_-	replication initiation factor domain-containing protein	S0F3I3	Stenotrophomonas_phage	1.0e-152	71.9
WP_043877757.1\|2542890_2543073_-	hypothetical protein	NA	NA	NA	NA
WP_043877758.1\|2543069_2543342_-	hypothetical protein	A0A1D6ZIV2	Xanthomonas_phage	8.3e-16	85.7

DBSCAN-SWA_3

3032110 : 3042586

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011036903.1\|3032110_3034075_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-12	43.6
WP_011036902.1\|3035289_3035502_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	1.5e-12	65.5
WP_011269876.1\|3035643_3038292_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.4e-83	39.8
WP_011036900.1\|3038393_3038882_-	recombination regulator RecX	NA	NA	NA	NA
WP_011036899.1\|3038997_3040029_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.6e-112	61.3
WP_011269877.1\|3040201_3040843_-	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
WP_011036897.1\|3040909_3042586_-	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	9.3e-41	27.7

DBSCAN-SWA_4

3122936 : 3220887

Leptospira_phage(29.41%)

transposase,tRNA,integrase

attL 3132509:3132561|attR 3203026:3203042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075287475.1\|3122936_3123545_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_138922046.1\|3123710_3123995_-	hypothetical protein	NA	NA	NA	NA
WP_011035386.1\|3124217_3125432_-\|transposase	IS4-like element IS1481A family transposase	A0A0F7LAS3	uncultured_marine_virus	2.7e-50	31.5
WP_172642109.1\|3125909_3128984_-	RHS repeat protein	NA	NA	NA	NA
WP_148206559.1\|3131437_3132515_+\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	1.3e-43	41.4
3132509:3132561	attL	NA	NA	NA	NA
WP_011269890.1\|3133199_3136274_+	hypothetical protein	NA	NA	NA	NA
3132509:3132561	attL	NA	NA	NA	NA
WP_087942918.1\|3136315_3137459_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.6e-87	58.4
WP_011036811.1\|3137748_3138144_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_002804328.1\|3138140_3138392_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_011036809.1\|3138572_3139139_+	recombinase family protein	Q71TD8	Escherichia_phage	7.9e-45	53.6
WP_011036808.1\|3139191_3140259_-	avirulence protein	NA	NA	NA	NA
WP_075287478.1\|3140514_3140955_+	hypothetical protein	NA	NA	NA	NA
WP_087942919.1\|3140932_3142065_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.2e-49	41.9
WP_138922048.1\|3142125_3142941_-	hypothetical protein	NA	NA	NA	NA
WP_011036805.1\|3142999_3143647_-	hypothetical protein	NA	NA	NA	NA
WP_011036804.1\|3143686_3147703_-	hypothetical protein	NA	NA	NA	NA
WP_011036803.1\|3147739_3148381_-	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_040942343.1\|3148911_3149193_+	hypothetical protein	NA	NA	NA	NA
WP_011036802.1\|3149220_3149820_+	hypothetical protein	NA	NA	NA	NA
WP_011036801.1\|3149948_3150308_+	hypothetical protein	NA	NA	NA	NA
WP_011036800.1\|3150370_3150850_-	hypothetical protein	NA	NA	NA	NA
WP_029628983.1\|3150901_3151552_-	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_011036798.1\|3151645_3152125_-	DNA repair protein RadC	NA	NA	NA	NA
WP_016945339.1\|3152523_3152856_-	hypothetical protein	NA	NA	NA	NA
WP_016945337.1\|3153580_3154087_-	hypothetical protein	NA	NA	NA	NA
WP_019237757.1\|3154826_3155294_-	hypothetical protein	NA	NA	NA	NA
WP_011036793.1\|3155458_3155728_-	hypothetical protein	NA	NA	NA	NA
WP_019237759.1\|3156108_3157500_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011036791.1\|3157525_3158521_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_043877799.1\|3158695_3158965_-	EexN family lipoprotein	NA	NA	NA	NA
WP_138922049.1\|3159371_3160106_+	hypothetical protein	NA	NA	NA	NA
WP_011035385.1\|3160158_3161139_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.3e-98	61.0
WP_087942069.1\|3161320_3162453_-\|transposase	IS3-like element IS476 family transposase	S5WIU1	Leptospira_phage	3.8e-54	44.1
WP_100101058.1\|3162816_3163918_+\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	4.5e-44	41.9
WP_087942065.1\|3164782_3165891_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.9
3163888:3163940	attR	NA	NA	NA	NA
WP_011036786.1\|3166187_3167312_-	hypothetical protein	NA	NA	NA	NA
3163888:3163940	attR	NA	NA	NA	NA
WP_011036785.1\|3167421_3167763_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019237765.1\|3167874_3168636_+	hypothetical protein	NA	NA	NA	NA
WP_011036783.1\|3168681_3168996_+	hypothetical protein	NA	NA	NA	NA
WP_029628985.1\|3168992_3169373_+	hypothetical protein	NA	NA	NA	NA
WP_011036781.1\|3169612_3170827_+	hypothetical protein	NA	NA	NA	NA
WP_138922050.1\|3170823_3171354_+	hypothetical protein	NA	NA	NA	NA
WP_011036780.1\|3171335_3173315_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_138922051.1\|3173572_3174016_-	hypothetical protein	NA	NA	NA	NA
WP_011036779.1\|3174077_3175364_-	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_019237801.1\|3175450_3176917_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011036777.1\|3177262_3178282_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011036776.1\|3178559_3179840_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-97	55.1
WP_012438644.1\|3179949_3180603_+	energy transducer TonB	NA	NA	NA	NA
WP_012438645.1\|3180716_3181280_+	energy transducer TonB	NA	NA	NA	NA
WP_011036773.1\|3181263_3182580_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_016944749.1\|3182695_3183898_-	prephenate dehydratase	NA	NA	NA	NA
WP_011036771.1\|3183964_3185050_-	phosphoserine transaminase	M1Q1P2	Streptococcus_phage	4.1e-74	43.7
WP_011036770.1\|3185225_3186194_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_011036769.1\|3186345_3187002_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_011036768.1\|3186943_3187753_-	FHA domain-containing protein	NA	NA	NA	NA
WP_011036767.1\|3187864_3188140_+	polyhydroxyalkanoic acid system family protein	NA	NA	NA	NA
WP_011269893.1\|3188275_3188836_+	phasin family protein	NA	NA	NA	NA
WP_011269894.1\|3189077_3190079_+	restriction endonuclease	NA	NA	NA	NA
WP_011269895.1\|3190262_3190967_-	histidine utilization repressor	NA	NA	NA	NA
WP_019237797.1\|3191079_3192450_-	formimidoylglutamate deiminase	NA	NA	NA	NA
WP_011036762.1\|3192510_3193716_+	imidazolonepropionase	NA	NA	NA	NA
WP_011036761.1\|3193728_3195270_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	6.7e-78	40.1
WP_011036760.1\|3195304_3196147_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_011269897.1\|3196162_3197830_+	urocanate hydratase	NA	NA	NA	NA
WP_012438658.1\|3198004_3198742_+	hypothetical protein	NA	NA	NA	NA
WP_011269898.1\|3198962_3201425_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA
WP_011036756.1\|3201617_3204317_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.4e-107	34.4
WP_011036755.1\|3204526_3205591_-	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_012438660.1\|3205638_3206325_-	DUF3011 domain-containing protein	NA	NA	NA	NA
WP_011036753.1\|3206436_3207411_-	EF-P lysine aminoacylase GenX	A0A1V0SAC0	Catovirus	9.2e-17	26.1
WP_011036752.1\|3207407_3209909_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	3.9e-120	40.6
WP_014507402.1\|3210095_3211220_+	pyridoxal phosphate-dependent aminotransferase	A0A1X7BZP2	Faustovirus	9.1e-08	24.8
WP_011036750.1\|3211401_3212136_-	cell division protein ZipA	NA	NA	NA	NA
WP_011036749.1\|3212192_3215696_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_005991240.1\|3217198_3217648_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_005991243.1\|3217940_3218171_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_011036747.1\|3218182_3218617_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_014507399.1\|3218965_3219304_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_011036745.1\|3219492_3220887_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	2.2e-80	39.2

DBSCAN-SWA_5

3339233 : 3402486

Bacillus_phage(18.75%)

protease,transposase,tRNA,integrase

attL 3331324:3331357|attR 3342039:3342072

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3331324:3331357	attL	NA	NA	NA	NA
WP_011036647.1\|3339233_3340382_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011035783.1\|3340636_3342004_+\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6
WP_011036645.1\|3342776_3343469_+	hypothetical protein	NA	NA	NA	NA
3342039:3342072	attR	NA	NA	NA	NA
WP_043877925.1\|3343539_3344304_-	hypothetical protein	NA	NA	NA	NA
WP_087942920.1\|3344596_3345728_+\|transposase	IS3-like element ISXca1 family transposase	S5WIU1	Leptospira_phage	3.7e-49	42.8
WP_011035783.1\|3345916_3347284_+\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6
WP_011036642.1\|3347628_3349554_-	DEAD/DEAH box helicase	A0A160DHD3	Gordonia_phage	1.8e-40	29.1
WP_011036641.1\|3350822_3352298_-	hypothetical protein	NA	NA	NA	NA
WP_011036640.1\|3352441_3353158_-	OmpA family protein	NA	NA	NA	NA
WP_011269911.1\|3353162_3355052_-	anti-phage defense ZorAB system ZorA	NA	NA	NA	NA
WP_162490384.1\|3355071_3355299_-	hypothetical protein	NA	NA	NA	NA
WP_011035386.1\|3355688_3356903_-\|transposase	IS4-like element IS1481A family transposase	A0A0F7LAS3	uncultured_marine_virus	2.7e-50	31.5
WP_080506193.1\|3356970_3357147_-	ASCH domain-containing protein	A0A2I7QYU6	Vibrio_phage	2.7e-12	75.0
WP_011036637.1\|3357800_3357971_-	hypothetical protein	NA	NA	NA	NA
WP_011269914.1\|3358272_3358515_-	hypothetical protein	NA	NA	NA	NA
WP_043877806.1\|3358702_3360358_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	9.2e-17	34.3
WP_011036634.1\|3360374_3360620_-	hypothetical protein	NA	NA	NA	NA
WP_011036633.1\|3360857_3361832_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	8.9e-20	39.0
WP_011036632.1\|3361926_3363351_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_011036631.1\|3363344_3364076_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_011036630.1\|3364109_3367280_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011036629.1\|3367461_3368652_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_029628996.1\|3368648_3369422_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_011036627.1\|3369775_3370810_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011036626.1\|3371581_3372307_-	OmpA family protein	NA	NA	NA	NA
WP_019237804.1\|3372440_3373859_-	deoxyribodipyrimidine photo-lyase	A0A1V0S949	Catovirus	2.1e-46	31.6
WP_011036624.1\|3374149_3375580_-	replicative DNA helicase	O80281	Escherichia_phage	1.5e-119	53.4
WP_011036623.1\|3375768_3376323_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.6e-18	41.2
WP_011036622.1\|3376397_3378341_-	asparagine synthase (glutamine-hydrolyzing)	A0A1B1ISV2	uncultured_Mediterranean_phage	6.8e-27	31.5
WP_011036621.1\|3378363_3378987_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_029216863.1\|3379216_3381763_-	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_011036619.1\|3381855_3383019_-	glutaryl-CoA dehydrogenase	NA	NA	NA	NA
WP_011036618.1\|3383195_3383972_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_011036617.1\|3384116_3384332_+	hypothetical protein	NA	NA	NA	NA
WP_011036616.1\|3384331_3385099_+	TatD family hydrolase	NA	NA	NA	NA
WP_011036615.1\|3385144_3385975_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_011036614.1\|3386022_3386451_+	hypothetical protein	NA	NA	NA	NA
WP_011036613.1\|3386570_3387053_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_003483561.1\|3387129_3387345_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	5.0e-16	59.7
WP_011036612.1\|3387573_3388059_+	DUF456 domain-containing protein	NA	NA	NA	NA
WP_011036611.1\|3388225_3389356_+	phospholipase A	NA	NA	NA	NA
WP_029628998.1\|3389549_3390188_-	carbonic anhydrase	NA	NA	NA	NA
WP_011036609.1\|3390372_3391008_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_019237813.1\|3391036_3391462_-	hypothetical protein	NA	NA	NA	NA
WP_019237814.1\|3391655_3393173_-	fumarate hydratase	NA	NA	NA	NA
WP_019237815.1\|3393405_3395283_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.0e-24	39.1
WP_011036605.1\|3395506_3396286_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_011036604.1\|3396444_3396930_-	glutathione peroxidase	A0A1S7DLQ4	Molluscum_contagiosum_virus	1.4e-13	35.5
WP_019237816.1\|3397103_3399302_+	dipeptidyl carboxypeptidase II	A0A1V0SID3	Klosneuvirus	2.0e-43	27.6
WP_011036602.1\|3399529_3400030_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_019237817.1\|3400094_3400931_-	DUF3298 domain-containing protein	NA	NA	NA	NA
WP_011036600.1\|3400969_3401254_-	N-acetyltransferase	NA	NA	NA	NA
WP_012438794.1\|3401469_3401670_+	hypothetical protein	NA	NA	NA	NA
WP_011036598.1\|3401877_3402486_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_6

4289028 : 4295411

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014506571.1\|4289028_4290375_+	phosphohexose mutase	A0A127AWJ1	Bacillus_phage	1.2e-30	26.4
WP_011035868.1\|4290420_4291824_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-47	29.9
WP_011035867.1\|4291945_4292854_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.6e-29	33.6
WP_011035866.1\|4292850_4293408_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.3e-43	49.4
WP_012439277.1\|4293404_4294292_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.2e-95	57.8
WP_011270013.1\|4294355_4295411_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.1e-82	47.6

DBSCAN-SWA_7

4592730 : 4629482

Leptospira_phage(22.22%)

plate,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011038897.1\|4592730_4593795_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.9e-101	57.1
WP_002808376.1\|4594075_4594291_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_011038898.1\|4594517_4594964_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.7e-24	45.9
WP_019238042.1\|4595802_4596750_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_011038900.1\|4596830_4598579_+	DNA primase	A0A1S5RF71	Helicobacter_phage	6.5e-45	34.8
WP_011038901.1\|4598575_4599076_+	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_070698071.1\|4599122_4600157_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_011038903.1\|4600386_4601964_+	thioredoxin family protein	NA	NA	NA	NA
WP_014506322.1\|4601983_4602880_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_011038905.1\|4602882_4604046_-	COX15/CtaA family protein	NA	NA	NA	NA
WP_011038906.1\|4604056_4604632_-	hypothetical protein	NA	NA	NA	NA
WP_011038907.1\|4604659_4605385_-	SURF1 family protein	NA	NA	NA	NA
WP_011038908.1\|4605445_4605664_+	twin transmembrane helix small protein	NA	NA	NA	NA
WP_011038909.1\|4605760_4606636_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_011038910.1\|4606672_4607269_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_011038911.1\|4607265_4607439_-	hypothetical protein	NA	NA	NA	NA
WP_011038912.1\|4607419_4609024_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	7.8e-05	35.2
WP_011038913.1\|4609063_4610047_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_016944221.1\|4610063_4610540_-	DUF2244 domain-containing protein	NA	NA	NA	NA
WP_011038915.1\|4610818_4614019_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_011035783.1\|4614265_4615633_+\|transposase	IS5-like element IS1478 family transposase	K4ICS3	Acidithiobacillus_phage	2.8e-80	63.6
WP_129588839.1\|4615746_4615983_-	hypothetical protein	NA	NA	NA	NA
WP_172642105.1\|4616209_4617019_-	hypothetical protein	NA	NA	NA	NA
WP_011038660.1\|4617398_4617998_-	hypothetical protein	NA	NA	NA	NA
WP_012437268.1\|4618163_4618562_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_012437267.1\|4618558_4618831_-	hypothetical protein	NA	NA	NA	NA
WP_175422437.1\|4619130_4620396_-	restriction endonuclease	NA	NA	NA	NA
WP_100101058.1\|4620496_4621599_-\|transposase	IS3-like element IS1404 family transposase	S5WIU1	Leptospira_phage	4.5e-44	41.9
WP_012437264.1\|4621943_4622825_+	hypothetical protein	NA	NA	NA	NA
WP_011038664.1\|4622989_4623400_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_087942065.1\|4623356_4624465_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.9e-43	37.9
WP_087942071.1\|4625783_4626928_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.8e-88	58.8
WP_011038670.1\|4627261_4628275_+	hypothetical protein	NA	NA	NA	NA
WP_011035385.1\|4628501_4629482_+\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	1.3e-98	61.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007086

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection