CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes
NC_007110	Rickettsia felis URRWXCal2 plasmid pRF, complete sequence	0 crisprs	DEDDh
NC_007109	Rickettsia felis URRWXCal2, complete sequence	2 crisprs	PD-DExK
NC_007111	Rickettsia felis URRWXCal2 plasmid pRFdelta, complete sequence	0 crisprs	DEDDh

Cas Category Instructions

Results visualization

1. NC_007109

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_007109_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007109_1

366905-367193

Orphan

Consensus_repeat	Method
TAATCTTGATAAAGCAATAGAGAAAGGTGATTTAGCT	PILER-CR
AAAGCCGTGCTTGAACATAGTACTACAAAGATAGAGTCTTATAGTCTTGATAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_007109_1

>merge|NC_007109|1|366905-367193|PILER-CR,CRISPRCasFinder
TAATCTTAATAAAGCAATAGAGAAAGGTGATTTAGCTATTCTAAAAGCCGTGCTTGAACATAGTACTACAAAGATAGAGTCTTATAGTCTTGATAAAGCAATAGAGAAAGGTGATTTAGCTATTCTGAAAGCCGTACTTGAACATAGTACTACAAAGATAGAGTCTTATAGTCTTGATAAGGCTATAGAGAAAGGTGATTTAGCTATTCTGAAAGCTGTGCTTGAACATAGTACTACGAAAATAGAGTTCTATAATCTTGATAAAGCAATAGAGAAAGGCGATTTAGAT

>NC_007109|1|1|366905-367193|PILER-CR
TAATCTTAATAAAGCAATAGAGAAAGGTGATTTAGCT	ATTCTAAAAGCCGTGCTTGAACATAGTACTACAAAGATAGAGTCTTA
TAGTCTTGATAAAGCAATAGAGAAAGGTGATTTAGCT	ATTCTGAAAGCCGTACTTGAACATAGTACTACAAAGATAGAGTCTTA
TAGTCTTGATAAGGCTATAGAGAAAGGTGATTTAGCT	ATTCTGAAAGCTGTGCTTGAACATAGTACTACGAAAATAGAGTTCTA
TAATCTTGATAAAGCAATAGAGAAAGGCGATTTAGAT

>NC_007109|1|1|366948-367168|CRISPRCasFinder
AAAGCCGTGCTTGAACATAGTACTACAAAGATAGAGTCTTATAGTCTTGATAA	AGCAATAGAGAAAGGTGATTTAGCTATTCTGAAAGCCGTACTTGAACATAGTACTACAAAGATAGAGTCTTATAGTCTTGATAAGGCTATAGAGAAAGGTGATTTAGCTATTCTG
AAAGCTGTGCTTGAACATAGTACTACGAAAATAGAGTTCTATAATCTTGATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007109.1\|WP_011270680.1\|356451_357303_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_007109.1\|WP_081427805.1\|372132_372447_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_007109.1\|WP_011270690.1\|369343_370021_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|223675
NC_007109.1\|WP_011270694.1\|372443_373541_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_007109.1\|WP_011270689.1\|368561_368915_-\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_007109.1\|WP_041405310.1\|361730_362030_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163
NC_007109.1\|WP_011270691.1\|370433_371045_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NC_007109.1\|WP_011270677.1\|354394_354664_-\|type-II-toxin-antitoxin-system-YafQ-family-toxin	unknown	unknown	gnl\|CDD\|379750
NC_007109.1\|WP_011270678.1\|354667_354928_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NC_007109.1\|WP_011270688.1\|368274_368409_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NC_007109.1\|WP_011270682.1\|358800_359511_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NC_007109.1\|WP_004997924.1\|368935_369142_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_007109.1\|WP_187145859.1\|373808_373967_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_007109.1\|WP_011270692.1\|371328_371886_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|223271
NC_007109.1\|WP_011270406.1\|363778_364579_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NC_007109.1\|WP_156110739.1\|362398_362557_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NC_007109.1\|WP_011270687.1\|367898_368255_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|100883
NC_007109.1\|WP_011270681.1\|357381_358620_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_007109.1\|WP_011270683.1\|359752_361354_+\|hypothetical-protein	unknown	unknown	unknown
NC_007109.1\|WP_011270679.1\|355087_356107_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213

Protein	Function_ID	Function_description	E-value
NC_007109.1\|WP_011270680.1\|356451_357303_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	1.27295e-73
NC_007109.1\|WP_187145859.1\|373808_373967_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	0.000197009
NC_007109.1\|WP_011270690.1\|369343_370021_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|223675	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones].	6.29164e-57
NC_007109.1\|WP_011270694.1\|372443_373541_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_007109.1\|WP_011270691.1\|370433_371045_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	9.21479e-76
NC_007109.1\|WP_041405310.1\|361730_362030_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	6.20777e-08
NC_007109.1\|WP_081427805.1\|372132_372447_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.33772e-12
NC_007109.1\|WP_011270688.1\|368274_368409_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	1.24213e-10
NC_007109.1\|WP_011270678.1\|354667_354928_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	5.61456e-15
NC_007109.1\|WP_011270677.1\|354394_354664_-\|type-II-toxin-antitoxin-system-YafQ-family-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	6.31139e-42
NC_007109.1\|WP_011270682.1\|358800_359511_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	5.21691e-119
NC_007109.1\|WP_004997924.1\|368935_369142_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.43258e-19
NC_007109.1\|WP_011270692.1\|371328_371886_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|223271	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis].	4.09043e-92
NC_007109.1\|WP_011270406.1\|363778_364579_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.91848e-162
NC_007109.1\|WP_156110739.1\|362398_362557_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.00515489
NC_007109.1\|WP_011270687.1\|367898_368255_-\|ribonuclease-P-protein-component	gnl\|CDD\|100883	PRK01492, rnpA, ribonuclease P protein component.	8.58617e-58
NC_007109.1\|WP_011270681.1\|357381_358620_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.12344e-120
NC_007109.1\|WP_011270689.1\|368561_368915_-\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	4.461e-61
NC_007109.1\|WP_011270679.1\|355087_356107_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	1.96871e-117

>NC_007109.1|WP_011270406.1|363778_364579_+|AAA-family-ATPase
MNLQHQRIEELCHSLNLMQIAENYLDIAQSSSKEDSSYTDFLESILKTELLARQHRSKSILTKMAGFPAIKTLDDFDYDFATGIKHKVLEGLRSLSFVERQENIILLGPSGVGKTHIAIALGYAATQCGIKTKFTTAADLMLILNAGLNQGNLDSIFKRVILPYKLLIIDEFGYLPLKPEQANLLFQVIAKRYEKGSIILTSNLPFGQWHNSLAQDSALTAAILDRLLHHSTILNIKGDSFRLKDKKKTGLVPIEIINKQEDNFMT
>NC_007109.1|WP_156110739.1|362398_362557_+|hypothetical-protein
MLKWWFQTQYDRLIEAIRTKNIEEAQRLIAEMSITELNKVDSKGETVLTWAA
>NC_007109.1|WP_041405310.1|361730_362030_-|tyrosine-type-recombinase/integrase
MAWGDIDLQNKIWNISNIKKEKSRYLSLTDEAIQILYRRKQKSNSLWVFPAKNKINHMVKPTPTLRKIVKETGYKDLTFNNLSKTLEKLTDPLRASIKL
>NC_007109.1|WP_011270683.1|359752_361354_+|hypothetical-protein
MKIRFIIISFIALILVGWGYAAYKFEHQSKENIISILDEYGEYVTYDSIKVNKYGFSITLNKVMLKPIDFYFDEIVIRHIPFLNITKIDSYGNDVKITIAQDEKNIFYSPDHHTTIWFRKSLFNREPDYWKLSLSDNKSTLYSSLDAEKLAESDISNSVITNTKTSDNLNLLILDGENTVSFISENYRGNLYDKIFEFLRDKIANDSDTASFEYGLTKLDILNLPISYNSKLKLKYSDELLALGKLLIQNFSLNQKQDENMHAVIFMQMLGELVKGKPFLFSCDIERKGKVESYLYKLNIEKDKIFDFALNSKSTIEPSETYQKTAVEALGSYFSNGLNKRAELDKIFKLTSPITQEDGEKVMGVFAKINNSEFNLKGEFDPEAKKLSGKTNLVMDDFNFAIDIDMPNLDNPLNLESVIKLSDPNAFINNFVNYTDNAVIPVLNKMEGSKEFALNLGKQSSVIKQYGFRAIEAFSKNSELKDGESLVVDVKGKDTGLTFNDKAIDQIFGDARVLEFMNAMAQIEQERKQVVGK
>NC_007109.1|WP_011270682.1|358800_359511_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MKTQLYKGSSKILYSAEEDFLLIMAFSDNVTLESGEIIEISGKGVLNNNISSFLMDKLEMNGIENHFIEKINMREQLIQYVEVFPVQVIISSVACGRFVKEFGMDEGYVFDKPIIDFKVRSREFKYPIVNEYQILNFGWLTRDEIKAVKEQALRIYDFLSGLFIGVGIRLVECKLEFGRVFNGEESIIMLTDEISPDNCRLWHINSNEKLGFELLENEPNKAFESYQLIADRLKEK
>NC_007109.1|WP_011270681.1|357381_358620_+|insulinase-family-protein
MKENFNISKLKNGLTVLTYNMPYVDSVAINLITKVGSRYENSEEEGISHFLEHMAFKGTTTRTAKQIAEEFDEIGGHFNAYTGHEKTIYYARVLSENCDKALNILADIIQNSIFAEEEIAKEYQVILQEIAHSQDNPDDLIYEKFYSSVYKDQPLGKPILGASKTLSSFTKEHFLSFIDKHYNAGNLYLSVAGNVDHDKIVSSAERLFSSLKQGEKSNFLPAKYIGGNSFINKDLEQTTLILGFEGTPYINLERLYRTQLLAIIFGGGMSSRLFQHIREKLGLAYAVGSYNSTYSDSGVFTIYASTAHDKLELLYKELKTEITKMTEKVNEEEMIRAKTQLRSNLLMAQEKVAYKSEEIGKNYAAFGKYIPPEEIMEIITNIKADDIINTANKIFSSITTSAIIGPNDLRGF
>NC_007109.1|WP_011270680.1|356451_357303_+|glycosyltransferase-family-2-protein
MEKISAFIITKNEAARIARAINSVKNIVDEVIVVDSESTDDTVAIAEQLGAKVIVKPWLGYVGQKSFAESLCVNDWILNIDADEELSKELQDEIEYIFASHNQDRYLAYQIKLLIMHRNDQKPRMFAPFNKCTRLYNKKFASFANTVNSTTHDSVVFNKDVDFAGKIYLLNEAAYHYSGTSIEQLVTKANFYSSEQAKDLVKQGKKLSNFRLTTEMIWWFFKAFFIRRYFVFGFDGFVDSMIFAFARFLRLAKLRESLLKSKNVIARSEATWQSRKNNKNSTN
>NC_007109.1|WP_011270679.1|355087_356107_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MLNFAPYIDLPLIWGGLIATAICLYVLLDGFDLGVGILFPFAPTDDCRHKMINSIAPFWDGNETWLVLGGGGLFAAFPLAYSLLMPALYIPIALMLLGLIFRGVAFEFRFKAHIGHRYIWDYAFHFGSMLAVFCQGLMLGTFVQGIEIEGREFAGGSFDFLTPFSVMTGIALIFGYALLGATWLILKTEKKTQDWAYKSALYILFYVALFMGLVSLWVPFLNNHINHRWFSVPNIHYLSIVPIVTALIFIKLIKAVKQKKEVKPFIYTILLFLLGYLGLAISIWPYIVPYKVTLETAAAAPESQSLLLIGAGIFLPVILGYTFYCYYIFRGKSSHHPIY
>NC_007109.1|WP_011270678.1|354667_354928_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MTKSAFIRARVDPELKEEAENVLDELGITPTQAVTMLYKYVAREHKWPTTIKIPNAVTLKTFESTDNKIGLIASNNTKKMFKKLGI
>NC_007109.1|WP_011270677.1|354394_354664_-|type-II-toxin-antitoxin-system-YafQ-family-toxin
MFRPIYTKSFEKDIKLAIKRGKDLNKLKMLIELLVNKTALPIKYRDHQLIGNFIGRRECHIEPNWLLIYKIDNECIIFERTGTHSDIFK
>NC_007109.1|WP_011270687.1|367898_368255_-|ribonuclease-P-protein-component
MSITSLKNQKEFELINKLGKKFHERYFILVIAKKLPKIFLESKYNTFLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSKLKAIKFAMIIIPRKGFEEINFSHLNCELSKIILRNI
>NC_007109.1|WP_011270688.1|368274_368409_-|50S-ribosomal-protein-L34
MKRTFQPSNLVRKRRHGFRSRMATPTGRAILRKRRAKGRHKLSA
>NC_007109.1|WP_011270689.1|368561_368915_-|50S-ribosomal-protein-L20
MTRAKSGKISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNSDGFASIIEQAKAHI
>NC_007109.1|WP_004997924.1|368935_369142_-|50S-ribosomal-protein-L35
MPKLKTKSAVKKRFKLTASGKVIASQAGKKHFMRRRTKAQIRNLRGTTILCPQDGYNIKKYFLPYGIN
>NC_007109.1|WP_011270690.1|369343_370021_+|7-carboxy-7-deazaguanine-synthase-QueE
MFGQNPKRSILNGDGTKLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNLACNFCDTEFEDFKLVDIAEILNKVESLALNSKNEKSINLVVITGGEPMRQPIELLCQKLLDQDFKIQIETNGTLYRSLPNEVSIICSPKAGKNGYSKIREDLLPKISAVKFIIAKNILEYSLIPEVGQTSYNIPVFVQPMDQNDQSLNDENNELAVKLALESGARLSLQTHKFLGIE
>NC_007109.1|WP_011270691.1|370433_371045_+|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MSEILELEAKSRTEFGTGASRALRREGRVPAIIYGAGKTPVSISLEEKEITKYYRKPAFISQLINLTIDKKKYKVLPKAVELHPVTDIVRHVDFVFLEEKTQKMEVPVVYEGKERALGVKRGGYFNIVKRRVTLLCDVNNIPRNVTIDVTNMPIATSLKSSKIELPKGCSFTTKKEFVLATIIGRRGAKTEAEGEQQAAEAGK
>NC_007109.1|WP_011270692.1|371328_371886_+|aminoacyl-tRNA-hydrolase
MILVIGLGNPGKEYQYTRHNIGFIAIEKIANQYNSSFSIKKKFNCEIAETISDGQKIIFIKPTTYMNLSGKSVISVKTYYNIQSAKIFVIHDDIDLETGRIKFKTGGGNGGHNGLKSIDGVIGNNYNRIRVGVGRPQNNQDVADYVLNNFLKSEYETALQAIDRIANNFDLILENKLEEFKNKIV
>NC_007109.1|WP_081427805.1|372132_372447_+|GNAT-family-N-acetyltransferase
MESFSFSCLDQDKNFVAGISGMSSWGGFYIDSLFVNENIRNQNYGTLLMQKAEDLARERDCNFIHLVTMDFQAKPFYEKLGYKIEFAMHGYEKDSIMYYLRKDL
>NC_007109.1|WP_011270694.1|372443_373541_+|redox-regulated-ATPase-YchF
MTLKLGIVGLPNVGKSTLFNALTASQLADAANYPFCTIEPNSSKVLVPDERLQRLANLAGSGKIIPSYIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAILHVLRCFEDEDITHVHNKVDPIHDLEVIETELILADIESVEKRLATSEKRLKSGDKTMAEQIELLKEVYKVLADGKPARVLNEALGADNLKQLQLITSKPVLYICNVLEKDAAIGNEFTKLVAERAKKENAKSVVISSKIEAEIALLESMEEKEEFLKFIGLEETGLSKVIKEGYNLLNLKSFFTIGPKEAHSWTFKDGTLAPSAAGIIHTDFEKGFIRAEVIGYEDYINLGSEAKAKEVGKMRLEGKEYKMQDGDIVHFRFNV
>NC_007109.1|WP_187145859.1|373808_373967_+|nucleotidyltransferase-domain-containing-protein
MIILYGSFARGDWVRDLPNGYHSDTDILIILKKSKYKGHATLRLKDNIYKRF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_007109_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007109_2

1369530-1369658

Orphan

Consensus_repeat	Method
GCTGGACCATTATAGCTTGTACCGCCTGTACCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007109_2

>merge|NC_007109|2|1369530-1369658|CRISPRCasFinder
GCTGGACCATTATAGCTTGTACCGCCTGTACCTACACTGCCACCTGAAGTAGCGGAAGTAGATGGAACATAGCCAGCAGGACTGCCGCCTGATGCTGGACCATTGTAGCTTGTACCGCCTGTACCTACA

>NC_007109|2|2|1369530-1369658|CRISPRCasFinder
GCTGGACCATTATAGCTTGTACCGCCTGTACCTACA	CTGCCACCTGAAGTAGCGGAAGTAGATGGAACATAGCCAGCAGGACTGCCGCCTGAT
GCTGGACCATTGTAGCTTGTACCGCCTGTACCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_007109.1\|WP_011271585.1\|1365428_1365668_+\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223349
NC_007109.1\|WP_011271595.1\|1379059_1379977_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NC_007109.1\|WP_011271589.1\|1367445_1367886_+\|hypothetical-protein	unknown	unknown	unknown
NC_007109.1\|WP_011271584.1\|1364936_1365263_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NC_007109.1\|WP_011271597.1\|1380824_1381427_-\|phospholipase-D-family-protein	unknown	unknown	gnl\|CDD\|197267
NC_007109.1\|WP_011271588.1\|1366739_1367186_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NC_007109.1\|WP_011271583.1\|1363212_1364940_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NC_007109.1\|WP_011271586.1\|1365999_1366248_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_007109.1\|WP_039595201.1\|1362740_1363220_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|226329
NC_007109.1\|WP_011271599.1\|1383648_1385127_-\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_007109.1\|WP_081427789.1\|1383506_1383692_+\|palindromic-element-RPE5-domain-containing-protein	unknown	unknown	gnl\|CDD\|163488
NC_007109.1\|WP_011271594.1\|1378520_1378952_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NC_007109.1\|WP_187145852.1\|1360405_1360582_-\|hypothetical-protein	unknown	unknown	unknown
NC_007109.1\|WP_011271593.1\|1377750_1378362_+\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|234957
NC_007109.1\|WP_011271581.1\|1361672_1362509_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_007109.1\|WP_011271598.1\|1381572_1383324_-\|class-I-poly(R)-hydroxyalkanoic-acid-synthase	unknown	unknown	gnl\|CDD\|213656
NC_007109.1\|WP_011271592.1\|1377523_1377739_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NC_007109.1\|WP_011271587.1\|1366256_1366616_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_007109.1\|WP_143549721.1\|1380177_1380612_+\|TIGR01841-family-phasin	unknown	unknown	gnl\|CDD\|378164
NC_007109.1\|WP_011271591.1\|1375034_1376708_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_007109.1\|WP_011271585.1\|1365428_1365668_+\|BolA-family-transcriptional-regulator	gnl\|CDD\|223349	COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms].	7.24138e-24
NC_007109.1\|WP_011271595.1\|1379059_1379977_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.63123e-131
NC_007109.1\|WP_011271583.1\|1363212_1364940_-\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	6.69298e-117
NC_007109.1\|WP_011271584.1\|1364936_1365263_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.93679e-43
NC_007109.1\|WP_011271597.1\|1380824_1381427_-\|phospholipase-D-family-protein	gnl\|CDD\|197267	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	8.89237e-65
NC_007109.1\|WP_011271588.1\|1366739_1367186_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	2.21492e-08
NC_007109.1\|WP_011271586.1\|1365999_1366248_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.0649e-13
NC_007109.1\|WP_039595201.1\|1362740_1363220_-\|SH3-domain-containing-protein	gnl\|CDD\|226329	COG3807, COG3807, Uncharacterized protein conserved in bacteria [Function unknown].	1.48454e-81
NC_007109.1\|WP_011271599.1\|1383648_1385127_-\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NC_007109.1\|WP_011271594.1\|1378520_1378952_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	5.38139e-55
NC_007109.1\|WP_011271593.1\|1377750_1378362_+\|septum-formation-inhibitor-Maf	gnl\|CDD\|234957	PRK01526, PRK01526, Maf-like protein; Reviewed.	3.97886e-142
NC_007109.1\|WP_011271581.1\|1361672_1362509_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	3.61522e-36
NC_007109.1\|WP_011271598.1\|1381572_1383324_-\|class-I-poly(R)-hydroxyalkanoic-acid-synthase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_007109.1\|WP_011271592.1\|1377523_1377739_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.17683e-43
NC_007109.1\|WP_011271587.1\|1366256_1366616_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.11221e-14
NC_007109.1\|WP_143549721.1\|1380177_1380612_+\|TIGR01841-family-phasin	gnl\|CDD\|378164	pfam09361, Phasin_2, Phasin protein. This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.	7.93242e-09
NC_007109.1\|WP_081427789.1\|1383506_1383692_+\|palindromic-element-RPE5-domain-containing-protein	gnl\|CDD\|163488	TIGR03776, RPE5, Rickettsial palindromic element RPE5 domain. This model describes protein translations of a family, RPE5, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.	3.2371e-16

>NC_007109.1|WP_011271589.1|1367445_1367886_+|hypothetical-protein
MTNNNKGFASMDKEKVREIAAKGGHASHGGHHGHNDHDHGSGKQGFASMDKEKVKEIAAKEGHASHGGHHGHNDHDHGSGKQGFASMDKEKVREIAAKEGHASHGGHHGHNDHDHGSGKQGFASMDKEKVREIAAKGGHASHKGSH
>NC_007109.1|WP_011271588.1|1366739_1367186_-|ferritin-like-domain-containing-protein
MTTLVGTQNNFADAIKELIELDYDAIEAYKTAINRITNEDYKKQLDAFKTDHERHVKELNKLLSKHNEKTIKGPSSKQWLTKGKVILADLVDDKAILYAMHTNEEDTNTAYERLNEHSNKWHDASKTLKQGLLDEQKHKKWIEKQLEE
>NC_007109.1|WP_011271587.1|1366256_1366616_+|helix-turn-helix-transcriptional-regulator
MSNKHIIEYQGKPAFVVIPFNEYQELINKKQCITDETLYAEAIAKNEEYFPEDLVQKILNGENPIKVYREYRGLSQEQLAIKIGKTKQYISFIEKGLRKGTIDTLKKLSTVLNVDLDML
>NC_007109.1|WP_011271586.1|1365999_1366248_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MQYKLSFSKTALKNLLKISTNKRKAILEKLEQLKLNPYKENNNIKKLIGYDGYRLRIGDYRVIYRINKGKLEILVINVDVRG
>NC_007109.1|WP_011271585.1|1365428_1365668_+|BolA-family-transcriptional-regulator
MAISAEELEKILKKSFPNSIIKITDLVGDQDHYALEISDVQFNGLSLINQHKLVKNALSEILNKKLHAITIKTIAVPEK
>NC_007109.1|WP_011271584.1|1364936_1365263_-|ribosome-silencing-factor
MKKEAEELKLFILECLNEKKAEDIEVIDLTGKHKLADYIIFASGRSTKNVGAIAEYVALELKNNAGINSNIEGLGKSEWVLIDAGTILINIFYPEAREHFKLEEIWKR
>NC_007109.1|WP_011271583.1|1363212_1364940_-|cation:proton-antiporter
MNDHILINVIILLGTAVFIVAILKRLRLSPVLGYLIAGAAIGDHGLKIVTYDQTKLLGELGVVFLLFAIGLELSFERLKAMRRYVFGLGSLQVLTTAIVIAGAMVLIDGNSSAAIITGGGLALSSTALVMQVIEENRSQSTQIGRVSLAILLLQDLAVVPLLVVVPLLADSNKASLAAALGIALLKAVTALLTIFIVGRVFLRPVFSFISSESNNASELPISMTLLIVLSAAWATETFGLSLALGAFVAGVLVAETEFRLQAEESIYPFKSLFLGLFFMTVGMNIDALEMYEKISHILTLSIALIGIKTLIITAFCILFGFNKGVAFYSGLLLSQGGEFGFILFSLGKDSGVLEESTADILLLVVTFTMALTPLLAALGKKIAEKVDKGLGKTPTQMIELGARDLTNHIIIAGLGNTGKMVARVLEAEGISYVILDLDDDRVKEELSNGLPVFKGDVSQADTLKALGTERAFAIILTMNNQVTIKKSLKTISGNYQDIPIVVKLKNLKNAREFYDLGATTIIPESYETGLQIGGTVLKNIGISEQEINRIKVQFRLGNYIIAKKEDALSEVEDND
>NC_007109.1|WP_039595201.1|1362740_1363220_-|SH3-domain-containing-protein
MIKVFIILITIILSTTINADNKKLPIPRFVSIKSNEVNARSGPTTKSAVEWLFVKKGEPVEITAEYEQWRQVRDINGEGGWIHSSVLSGKRSVVITSDKEIELTKSADHKSRVIAKLMPKVRCGLKKCKEQFCQITCKNYTGWISKKVIWGVYDDNDRY
>NC_007109.1|WP_011271581.1|1361672_1362509_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MQRYLDGTNDVAFKKLFSDKVKLINLLNSLLRLSKGDRIIDLSYITTEQLPLFLEGKRSLFDLKVKDETGRWYIIEMQRKMEKDYLNRTQLYGCYTYVSQIKKGMKHRDLLPVVIISIIGTKALPDELPYVSYHHIKESNTHKQYLFSLTYVFIELGKFKKNDLKDDTDEWLHLLKYASQEQEPPKEIKNEIVLSAYASLEQYKWTDQEHDDYFRAEMAIQQEIDKFEEKFNAGMKKGIEKGKIEIIKKMLTKKIPIEEIHEMTGISIEEIKKLKAEI
>NC_007109.1|WP_187145852.1|1360405_1360582_-|hypothetical-protein
MAKKKIKDKAHKKESMIYITTPNQALAKLQTKVQDYIDTTGEKISLVDELIKLRRADG
>NC_007109.1|WP_011271591.1|1375034_1376708_-|hypothetical-protein
MSTQRKNILKNLIKKGMFTTASAAAMILVSTSSLALDNRDVIADDAVLSSGVNLDQNGGNIPFAPGSLLTFNNADSVTADVNAIAGIYVNAIGLSMTFLQNTVVGCIVPPDLLLANHSLNMTIPAGANVTLNGVAPSQAAAAAAVNAAGGANPFAPGLGNNVPADTYFINDIDFQGTNGQLTIQAADNGDIVFAAETTDTTITNGLKAIVNVNSNLQVKDISWATGLGKINIGANAIYNYVNNLPNPIDVNPIGNLVFLDPTSRADFSNENGASTQFFATEALTSKNDAAGIVAFHVSTSATNITVPVGTSPTQRFNTFITDGENVTTISSNIFAQKIIIQQDPTKLGGQTQLIWTTQLNTGAGGLVQFNSNSISQFNANITSNMDFNGKSATAILDDGVTVTGDIDDIIGGNLATLNFVGGSTVTGDVGANHAINTLNVKGNNPVNLQGNVTVDQFNFTADGIAAVGGTLTATAGVQYNDLEATLAFSNPVGSYIFSSPILQAGNGGVMVDTTLKATDASIATAKAIQIGANFSTAALTLAVNNPNLNLYSGRKSN
>NC_007109.1|WP_011271592.1|1377523_1377739_+|translation-initiation-factor-IF-1
MSKDDLIQFTGTVLELLPNATFRVKLENDYVIIAHTSGRMRKNRIRILLGDKVTVEMTPYDLTKGRVIHRH
>NC_007109.1|WP_011271593.1|1377750_1378362_+|septum-formation-inhibitor-Maf
MKQNKKNLPIILASSSPARIELLNRIKIIPSQIIPADIDETPNLRELPAPLAIRLAYEKAIKVASQIEESAIIIAADTVAAVGRRILPKATTYEEVKNCIKMVSGRRHRVYTGLCIIKKENDQLTVRQKIVQTIVKFKKLSDEEINFYCSLDEGIDKAGGCKISGYAEAFISFISGSYSNVMGLPLFETVNALTSLGFKVYNR
>NC_007109.1|WP_011271594.1|1378520_1378952_-|RNA-polymerase-binding-protein-DksA
MLETPKLPTGYKPSKDEEYMCPNHLEYFRQKLLRWKEDLLNESQETLNHLKEENLKESDLNDCATHETERAFELRSRNRYCKLMSKIEEALSRIENGEYGYCEETGDPIGIKRLEARPIAALCIEAQERHENYERSHLDEPGN
>NC_007109.1|WP_011271595.1|1379059_1379977_-|tyrosine-recombinase-XerC
MLDTSIQELIDKWQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSEDDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGLPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYPIKK
>NC_007109.1|WP_143549721.1|1380177_1380612_+|TIGR01841-family-phasin
MKSYMNPEFYMSSMKNIPSVDLSSITNTMQRAMNILLTTNQIATESMQSLLKKNSEIIQNNVNTILNTTKEAANSKDFKQASECHQKCLKSIYETSMDNAKELASIAYESSNKILEAANKHIAKNVHHASNNMQNMAEQVQKKL
>NC_007109.1|WP_011271597.1|1380824_1381427_-|phospholipase-D-family-protein
MKRKNNKFIEISIAFILGVALGIYGQNPDYFTNLINQKSLASSAPKIKHYNISELLRSKVSTCFTPPAGCTKFIANQIDRAEESIYMQAYGMSDALITTALINAQMRGVKVRILLDRSNLKQKFSKLHELQRAKIDVGIDKVPGIAHNKVIIIDRKKVITGSFNFTAAADKRNAENVIIIEDRELAESYLQNWLNRKASN
>NC_007109.1|WP_011271598.1|1381572_1383324_-|class-I-poly(R)-hydroxyalkanoic-acid-synthase
MYNIPHETIINNFKEIADKYQELILHFMQGRGSMIPRSLIDSDKNRIIASLMVEQFWANPEKFCQLNIEYIDKLRELTTNSFAKFVGSPAKAVFSPDNRDKRFKDSSWEDNAYFDFVKQYYLLSSEWLKKNIEQYELSNDLKQHLEFVTKHFIDAFSPSNFAFCNPKVLRETLESGGQNLVQGLENFLRDIKSSGDILNIKTTDKSAFKLGQNIAATKGKVIFQNDLMQLICYEPKEKVHKIPIFIIPPCINKYYILDLSPHNSLISFLVENNFQVFLISWVNPDISLSEKGFEDYLKDGILAPFEYVRNLGFKKIDFVGYCMGGTFLAIIIAYFKVKKIDSVHSSTFFTTLLDYTHPGELGIFFNEATINYIKEDIKLKGYFDGQYLSNSFSVLRANDLIWTFFVNNYLLGKKPMPFDLLYWNADSTNLPAKMYEEYLQNTYCNNLLKESNNLEVLETKIDLGKVDCNTFFVAAKEDHIAPWRSIYDGVKLLNGHKIFCLTDSGHVAGVVNPPEIAKYNYRLNDDLSLSSHEWLMKATEYEGSWWNYWLDWLIKNNDNKLIDSLDYQNLETIEEAPGSYVKR
>NC_007109.1|WP_081427789.1|1383506_1383692_+|palindromic-element-RPE5-domain-containing-protein
MKSWYTKLNLEKSKESVSRGAERIINVQHPRSYKDDVANFSNSASIYFISLNHPTYYQPCR
>NC_007109.1|WP_011271599.1|1383648_1385127_-|UbiD-family-decarboxylase
MSFKDLPEFLKFLEKNGELKRISTPVKTDLEITEISRRVLAQGGPALLFENVIKADGTKSDIPVLTNLYASINRICMGLKLKSPKELRELGVLLAFLKQPQPPASFKETLSMLPLAKRIFAMSPKTISKAACHEVVVDKPNINILPIQKCWPDDISPLITWGIVVTKGPTKDKVDNYNLGIYRMQVISENKLLMRWLKLRGGAEHHKRWKEAKKEPFPAAIVIGANPAVTLAAVTPIPENISEYNFAGLLGNEKIELVQCKTIDLKVPAHSEIVLEGYVSLEEYLPEGPFGDHTGYYNDVEEFPVFTVTAITMKKNPVYLSTYTGKPPDEPSILGEALNEIFIPILQQQFPEIVDFWLPPEGCSYRIAVVSIKKSYPGHAKRIMLGIWSYLRQFMYSKFIIVVDDDIDVRNWQEVIWAIATRSDPRRDTSFIDNSPIDYLDFASPDSGLGSKMGIDATDKIYPETNRKWGKKIEMSQEVIDKVDSMWDGLKI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage