CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007005	Pseudomonas syringae pv. syringae B728a, complete sequence	6 crisprs	DEDDh,PD-DExK,csa3,cas3,DinG	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007005_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007005_1

478149-478260

Orphan

Consensus_repeat	Method
AAGTCCGCTCTTGATTCTGGCCGAAGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007005_1

>merge|NC_007005|1|478149-478260|CRISPRCasFinder
AAGTCCGCTCTTGATTCTGGCCGAAGGCCGCAGGAGCGACCGGGGCGGCGACCCGCTTTGTTCGCGAAGGCTCGTCATGCAGAAGTCCGCTCTGGATTCTGGCCGAAGGCCG

>NC_007005|1|1|478149-478260|CRISPRCasFinder
AAGTCCGCTCTTGATTCTGGCCGAAGGCCG	CAGGAGCGACCGGGGCGGCGACCCGCTTTGTTCGCGAAGGCTCGTCATGCAG
AAGTCCGCTCTGGATTCTGGCCGAAGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007005.1\|WP_011266404.1\|478810_479206_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NC_007005.1\|WP_011266402.1\|476309_477029_-\|beta-ketoacyl-synthase-chain-length-factor	unknown	unknown	gnl\|CDD\|379349
NC_007005.1\|WP_003402969.1\|475521_476334_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_007005.1\|WP_003316688.1\|475286_475547_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|181682
NC_007005.1\|WP_011266400.1\|474480_475026_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226995
NC_007005.1\|WP_011266397.1\|471116_472064_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|226712
NC_007005.1\|WP_011266403.1\|477338_478118_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_007005.1\|WP_011266410.1\|484099_484741_+\|malonate-decarboxylase-holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234936
NC_007005.1\|WP_011266411.1\|484737_485673_+\|malonate-decarboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|132175
NC_007005.1\|WP_003402948.1\|485742_486159_+\|malonate-transporter-subunit-MadL	unknown	unknown	gnl\|CDD\|367674
NC_007005.1\|WP_164920437.1\|472787_474470_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223442
NC_007005.1\|WP_003316680.1\|470612_471062_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|238329
NC_007005.1\|WP_011266408.1\|482457_483309_+\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954
NC_007005.1\|WP_011266401.1\|475022_475277_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180033
NC_007005.1\|WP_011266407.1\|482165_482465_+\|malonate-decarboxylase-subunit-delta	unknown	unknown	gnl\|CDD\|179253
NC_007005.1\|WP_011266406.1\|481288_482164_+\|triphosphoribosyl-dephospho-CoA-synthase	unknown	unknown	gnl\|CDD\|234927
NC_007005.1\|WP_003402947.1\|486160_486925_+\|malonate-transporter-subunit-MadM	unknown	unknown	gnl\|CDD\|129890
NC_007005.1\|WP_011266398.1\|472060_472795_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NC_007005.1\|WP_011266409.1\|483305_484106_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|369102
NC_007005.1\|WP_011266405.1\|479612_481289_+\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906

Protein	Function_ID	Function_description	E-value
NC_007005.1\|WP_011266404.1\|478810_479206_-\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	6.64424e-25
NC_007005.1\|WP_011266402.1\|476309_477029_-\|beta-ketoacyl-synthase-chain-length-factor	gnl\|CDD\|379349	pfam13723, Ketoacyl-synt_2, Beta-ketoacyl synthase, N-terminal domain.	5.605e-91
NC_007005.1\|WP_003402969.1\|475521_476334_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.13049e-33
NC_007005.1\|WP_003316688.1\|475286_475547_-\|acyl-carrier-protein	gnl\|CDD\|181682	PRK09184, PRK09184, acyl carrier protein; Provisional.	4.83973e-23
NC_007005.1\|WP_011266400.1\|474480_475026_-\|membrane-protein	gnl\|CDD\|226995	COG4648, COG4648, Predicted membrane protein [Function unknown].	1.68462e-37
NC_007005.1\|WP_011266397.1\|471116_472064_-\|glycosyl-transferase	gnl\|CDD\|226712	COG4261, COG4261, Predicted acyltransferase [General function prediction only].	9.99468e-86
NC_007005.1\|WP_011266403.1\|477338_478118_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.95588e-48
NC_007005.1\|WP_011266410.1\|484099_484741_+\|malonate-decarboxylase-holo-ACP-synthase	gnl\|CDD\|234936	PRK01293, PRK01293, phosphoribosyl-dephospho-CoA transferase; Provisional.	1.52653e-95
NC_007005.1\|WP_011266411.1\|484737_485673_+\|malonate-decarboxylase-subunit-epsilon	gnl\|CDD\|132175	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.	1.27757e-107
NC_007005.1\|WP_003402948.1\|485742_486159_+\|malonate-transporter-subunit-MadL	gnl\|CDD\|367674	pfam03817, MadL, Malonate transporter MadL subunit.	2.59319e-56
NC_007005.1\|WP_164920437.1\|472787_474470_-\|AMP-binding-protein	gnl\|CDD\|223442	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism].	4.42466e-26
NC_007005.1\|WP_003316680.1\|470612_471062_-\|acyl-CoA-thioesterase	gnl\|CDD\|238329	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).	6.06055e-28
NC_007005.1\|WP_011266408.1\|482457_483309_+\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	3.03738e-168
NC_007005.1\|WP_011266401.1\|475022_475277_-\|acyl-carrier-protein	gnl\|CDD\|180033	PRK05350, PRK05350, acyl carrier protein; Provisional.	1.4645e-38
NC_007005.1\|WP_011266407.1\|482165_482465_+\|malonate-decarboxylase-subunit-delta	gnl\|CDD\|179253	PRK01220, PRK01220, malonate decarboxylase subunit delta; Provisional.	3.53445e-66
NC_007005.1\|WP_011266406.1\|481288_482164_+\|triphosphoribosyl-dephospho-CoA-synthase	gnl\|CDD\|234927	PRK01237, PRK01237, triphosphoribosyl-dephospho-CoA synthase; Validated.	2.98636e-156
NC_007005.1\|WP_003402947.1\|486160_486925_+\|malonate-transporter-subunit-MadM	gnl\|CDD\|129890	TIGR00808, malonate_transporter, malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.34774e-121
NC_007005.1\|WP_011266398.1\|472060_472795_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	6.59546e-37
NC_007005.1\|WP_011266409.1\|483305_484106_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	gnl\|CDD\|369102	pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyzes the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase.	4.70392e-94
NC_007005.1\|WP_011266405.1\|479612_481289_+\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0

>NC_007005.1|WP_011266403.1|477338_478118_+|ParA-family-protein
MRRVVFNQKGGVGKSSIACNLAAVSAHEGYRTLLIDLDAQANSTQYLTGLTGQDIPMGIAEFFKNTLSGSPVAKKNHVDIYETPFDNLHVVTATAELADLQPKLEAKHKINKLRKLLDELSEDYERIYLDTPPALNFYAVSALIASDRVLIPFDCDSFSRQALYGLMREIEELKEDHNEGLQVEGIIVNQFQPRASLPQQMLDELIAEGLPVLPVYLNASVKMRESHQANLPLIHLDPRHKLTQQFMELHHLLETNAHP
>NC_007005.1|WP_011266402.1|476309_477029_-|beta-ketoacyl-synthase-chain-length-factor
MITFNIARWQAWAPGLASAEDWQRWSLDPTLLETSDAAPDVSFLPAMQRRRLGRMARMAFAVGWPLTEGLGRVPLVFVSRHGETPRTFEILRDLAANEPLSPTQFSLSVHNAVIGLWSIMRGETSEMTALAATGDGLEYGAFEAAALLAEGAEAVLLVVTEEQPPQAYAQWIDDVPFPYAVGLLLTPGNEWQLSLNTDTQGTTRTQWPHALNLLRALHTDQSVCLHPWNNRLWNWQRSH
>NC_007005.1|WP_003402969.1|475521_476334_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MELATQSLKKGRDAYYWRLLATGISFALFGLSGLCLRLFVFPVLGCLPGNVASHQRRARRTISRLFWLFIRIMARMRVLTYDVQGAEKLGRPGQMIIANHPSLIDVVFLIGLVRDANCVVKRSLWENPFTRGPVRATGYISNDGSMDMLDAAVERLQSGQTLIIFPEGTRTQPGQPPVFHRGAAAIALRGASVITPVTIKVQPTTLTKAEPWYRIPQRRVHFTLRVGADIDPTAFSALGPPPLASRKLNDYLHDYFTKELASDERSAPGH
>NC_007005.1|WP_003316688.1|475286_475547_-|acyl-carrier-protein
MSDLHQDIKLLIIDALGLEDITPEDIGNDMTLFGEGLGLDSVDALELGLAIQKRYGIRIDADAKDTRNHFASVDSLAAFVSARQPA
>NC_007005.1|WP_011266401.1|475022_475277_-|acyl-carrier-protein
MQTREDIFEILRAAMVELFELEPERVTLEANLYQDLEIDSIDAVDLIDHIKRKTGKKIAAEEFKSVRTVKDVVEAVYKLVNTAE
>NC_007005.1|WP_011266400.1|474480_475026_-|membrane-protein
MKRLIGLILVLAGVLYPFAVYWGTEHFAPWQFALLLGSLWLARALTGERRQGSLAMAIVALIFCVVLGALDSHMMLRWYPVLVSTFMLGLFGSSLVYGPPIVEKMARLNRPDLPEAGIRYTRKVTQIWCLFFLVNGLTSAILTLWAPLSWWTLYTGLISYGLMGVLFAVEWIVRPPSAGGK
>NC_007005.1|WP_164920437.1|472787_474470_-|AMP-binding-protein
MNWLNLEHLLLDALPDRLLTLAPTLDHAQFRDQALSVAAGLQARGITHLAVHLEDAADLAIALFAAWRADVHVLLPADLQGQTRERWANQVDLWLTDLPGDTQLSDLRAAPLPAAALDLDQCRLSLCTSGSSGEPKLIEKRLRQLANEVCGLEQLWGAELGSACMIGSVATQHIYGLLFRLLWPLCAARPFVRRQLPFAEDLQRASREYPSFAWVASPALLKRMGDNLDWHSLAAVRRVFSSGGALPADATQSLQQRLGQWPTEILGSSETGGIAWRQGGQRWQAFDGVELSQDAQGALRISSPYLPPGHVEQTADAALIGEDGRFELLGRLDRIVKLEEKRVSLPLIEQALAAHEWVSEARLGVVQANRASLGALLVLSDAGLLALRNQGRRALTEALRQHLQPHCETIALPRRWRLLRQMPLNAQGKLPQADVEALLLAPRSKQPEVLEQQNVEGELHLHLSVPPDLAFFSGHFPKAPILPGVVQVDWAISLGRRLLDLPCGFAGMEVLKFQQLVRPGDRLTLTLRFDAARSKLHFAFRNADNAPCSSGRILLEDDHA
>NC_007005.1|WP_011266398.1|472060_472795_-|glycosyltransferase-family-2-protein
MHKPCVIIPVFDHELAVPTVVKAVRNAGLPCILVDDASSPACEAVLQQLAQGEAIYLLRLPVNQGKGGAVMAGFREALRLGFSHALQVDADGQHDLSDIPLFLEQSRQHPDALICGYPQFDESVPKGRLYARYLTHVWVWINTLSLHIRDSMCGFRLYPLAPVVALIDRVQIGRRMDFDSEILVRLSWRGQPMRWLPTRVHYPQDGLSHFRLFHDNALISKMHAKLFFGMLVRLPMILWRRWRP
>NC_007005.1|WP_011266397.1|471116_472064_-|glycosyl-transferase
MSIDKSPREHWASHQERGSFMLMKLTAWGMRVLGRRLLSPVLYGIVLYFFVFGRRARHSIWQYQQHLADWSGKPELRPGQRRVFGQFMAFADALLDKLDVWNGRLGIDQIEIVDQALLRQNLRGQRGQMLVGAHLGNLEVCRALAELGEKVTMNVLVHTKHAERFNRLLGEAGATHLRLIQVSELDPAIMLQLSQRLDEGEWLAIAGDRVALHGGRNVRVDFLGQPANFPQGPWLLAGLLKCPVNLFFCLKGAKGYRVILEPFADAIEWRRSDRAQVIEQWATRYAERLGHYCLEAPQQWFNFYPFWKSADESGS
>NC_007005.1|WP_003316680.1|470612_471062_-|acyl-CoA-thioesterase
MRSKGFLHIDTEIVVPFFDVDMMNIVWHGHYVKYLEVARCALLDHIGHNYMQMLESGYGWPVIDLQLRYVRSAVFGQTLNVRASLVEWENRLKINYLITDAHTGERLTRASTVQVAVDSQSREMQLASPQVFIDAVKNALESTIESASP
>NC_007005.1|WP_011266404.1|478810_479206_-|PAAR-domain-containing-protein
MSFIVREGDLTTTGGFVLAASASEVIERRRVARMGDPVWCPACREIGFIAQGNPTYIDELVAVATQGHEVQCGCEPGSNTLTTSQEHVQADMDATITIPEELANTARQNAEHLARSMKDGSFTPDVLRPLT
>NC_007005.1|WP_011266405.1|479612_481289_+|malonate-decarboxylase-subunit-alpha
MTTTTSPDARWTRRRSEKQRRLQQVRALADGVVLPTDNIVAALEALLVSGDRVVLEGNNQKQADFLSRALAKVDPGKVHDLHMIMPSVGRAEHLDLFEQGIARKLDFSFAGTQSLRISQLLEDGLLEIGAIHTYIELYSRLVVDLIPNVVLAAGFMADRAGNIYTGPSTEDTPALIEPAAFSDGIVIVQVNQLVDDVSELPRVDIPASWVDFVVVADKPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYEKHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRNWTLNPHPTLIPAIESGWVESVHCFGTELGMENYIAARPDVFFTGRDGSLRSNRQLCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHATPAWLDMRQQHDDGPAAYLERGKKLVVQMVETFQEGGKPTFVETLDAVEVAKKSGMPLAPIMIYGDDVTHLLTEEGIAYLYKARSLEERQAMIAAVAGVTVIGLRHNPKDTARMRREGLIALPEDLGIRRTDASRELLAAKSIADLVQWSGGLYNPPAKFRSW
>NC_007005.1|WP_011266406.1|481288_482164_+|triphosphoribosyl-dephospho-CoA-synthase
MSALQWSPHPASLAERLADLAVDALIDEADLSPKPALVDRRGSGAHTDLHLGLMHSSALSLWPTFKWMADAATQFGVVGQPLREALGRLGREGEATMLRTTSGVNTHRGAIWALGLLVTAAALDAQECAPEAICARAGALARIKDRQVLTQNSHGDQVVRRYGVMGAREQAQQGFPAVRLFALPQLQRSRAAGSGEQNARLDALLAIMTTLDDTCVLHRAGIEGLNAMQQGAQRVLYAGGSVSLAGRRALNALDQHLLALNASPGGAADLLAACLFIDGLEPALGPVSRSA
>NC_007005.1|WP_011266407.1|482165_482465_+|malonate-decarboxylase-subunit-delta
METLSFEFPAGQPPKGRALVGVVGSGDLEVLLEPGKPGTLSIQVVTSVNGAALRWQHLFERMFDGQTPPALSIDIHDFGATPGVVRMRLEQGFEEIGHD
>NC_007005.1|WP_011266408.1|482457_483309_+|biotin-independent-malonate-decarboxylase-subunit-beta
MTDNARLLNQHSFIELGARQRARALLDAGSFRELLGPFDRVMSPWLAMQGVVPQADDGVVVGKGTVDGRPVVIAAIEGSFQGGSMGEVGGAKMAGALELAAEDNRNGIPTAAIVLLETGGVRLQEANLGLAAIAEIHAAIVDLRQYQPVIGVVAGSVGCFGGMSIAAGLCSYLLVTQEARLGLNGPQVIEQEAGIEEYDSRDRPFIWSLTGGEQRFASALVDGFAADDVADVRQQVSGWLKQGVPDTHRSSQYPLFLQRLASLDTEPQIDPQSVRTLYQGARS
>NC_007005.1|WP_011266409.1|483305_484106_+|biotin-independent-malonate-decarboxylase-subunit-gamma
MSHSQRGLNWFNALSAGAREVTGLPASLKVADGVLGEQPVRFLAVIADTDNCFPRARQGEVGLLEGWGLAKAVDEAIEQDRDRAEKRALIAIVDVPSQAYGRREEALGIHQALAGAVDSYARARLAGHPVIGLLVGKAMSGAFLAHGYQANRLIALRDPGVMVHAMGKASAARVTLRSVEDLEKLAASIPPMAYDIDSYASLGLLWETLTVKQIEQPAADDLVQVRNVLSSAIKDVQARGVDLSSRLGASNRAASVNVRQLLRAQW
>NC_007005.1|WP_011266410.1|484099_484741_+|malonate-decarboxylase-holo-ACP-synthase
MVISNTGAVLPHDLLWGMPLTALPDDAPKWAVEAVLAGQPVVVRRQAMPAGQQVAVGLRGRGREQRYAASMPLAEVCRRVMPEQLIDAPTEIHQQWPALQALRQIRPVMEALELDWGVGGSAGFELASGIAALHQDSDLDLILRTPGRLNRRCAAELVEALETSVCRVDVQLQLESGAVALREWARPTGRVLLKTATGARLVADPWHLGQVCA
>NC_007005.1|WP_011266411.1|484737_485673_+|malonate-decarboxylase-subunit-epsilon
MSSLWVFPGQGSQQTGMLHQLPDEAVVRDCLQEAADALGEDVLALDTAGALQATRAVQLCLLIAGVACARVLQARDCVPDYLAGLSIGAYPAAVVSGALAFDDAVRLVALRGELMQSAWPQGYGMTALIGLDQTQVEALIGQVHSAKTPVFLANINADNQMVISGSAEAMHQVGQLAKAAGAAAVKRLAVSVPSHCALLDAPAQQLAEAFSRVALQAPTLRYLSGSTARPVLSAEKLRDDLAFNMCRVIDWRSTVETAWERGVRLHIELPPGSVLTGLARKVFQQGSALAFQAARLDSLVALSREEGRRTP
>NC_007005.1|WP_003402948.1|485742_486159_+|malonate-transporter-subunit-MadL
MIIYGVALLAICTLAGVILGDMLGVLLGVKSNVGGVGIAMILLICARLWMEKHGGMSKDCEMGVGFWGALYIPVVVAMAAQQNVVTALKGGPVAVLAAVGSVVLCACTIALISRTNRGEPLPKEEPLLTPEIAPAGGR
>NC_007005.1|WP_003402947.1|486160_486925_+|malonate-transporter-subunit-MadM
MWDLIEKGLEHNGLITAFAFVGIIMWVSVVLSRRLTFGRVHGSAIAIVIGLILAWVGGTLTGGQKGLADITLFSGIGLMGGAMLRDFAIVATAFEVQATEARKAGLIGVIALLLGTILPFIVGASIAWMFGYRDAISMTTIGAGAVTYIVGPVTGAALGATSDVMALSIATGLIKAILVMVGTPMAARWMGLDNPRSAMVFGGLAGTVSGVTAGLAATDRRLVPYGALTATFHTGLGCLLGPSVLYFIVRAIVG

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Crispr_ID: NC_007005_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007005_2

1715709-1715870

Orphan

Consensus_repeat	Method
CTGAGTTCGGAATCCGAACTC	PILER-CR

3 spacers

The CRISPR arrays of NC_007005_2

>merge|NC_007005|2|1715709-1715870|PILER-CR
TGAGTTCGGAATCCGAACTGTGCCGAATGATGCTGATTTTAGACTGAGTTCGGATTCCGAACTCGGTCTTTCGAGATTCGCTTTCTCGCTGATTTTACTGAGTTCGGAATCCGAACTCAGTGCTGAGGGCCCGCTTTCTTGCTGAGTTCGGATTCCGAACTC

>NC_007005|2|1|1715709-1715870|PILER-CR
TGAGTTCGGAATCCGAACTGT	GCCGAATGATGCTGATTTTAGAC
TGAGTTCGGATTCCGAACTCG	GTCTTTCGAGATTCGCTTTCTCGCTGATTTTAC
TGAGTTCGGAATCCGAACTCA	GTGCTGAGGGCCCGCTTTCTTGC
TGAGTTCGGATTCCGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007005.1\|WP_123060211.1\|1712212_1712344_-\|CrpP-family-protein	unknown	unknown	gnl\|CDD\|225672
NC_007005.1\|WP_011267074.1\|1716592_1717330_-\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NC_007005.1\|WP_032624628.1\|1724382_1724826_+\|DUF4113-domain-containing-protein	unknown	unknown	gnl\|CDD\|379184
NC_007005.1\|WP_011267070.1\|1705405_1706539_-\|TcpQ-domain-containing-protein	unknown	unknown	gnl\|CDD\|163460
NC_007005.1\|WP_011267079.1\|1721717_1722419_-\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NC_007005.1\|WP_005895538.1\|1712924_1713389_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|169261
NC_007005.1\|WP_011267077.1\|1719624_1720032_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_011267072.1\|1710222_1712109_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379539
NC_007005.1\|WP_011267075.1\|1717366_1719127_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|213858
NC_007005.1\|WP_017279759.1\|1714893_1715166_+\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_005895541.1\|1713390_1713975_-\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NC_007005.1\|WP_003317584.1\|1719129_1719447_-\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|367702
NC_007005.1\|WP_011267080.1\|1722415_1723171_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370635
NC_007005.1\|WP_011267071.1\|1706690_1708157_-\|SEC-C-domain-containing-protein	unknown	unknown	gnl\|CDD\|376935
NC_007005.1\|WP_017279760.1\|1712491_1712722_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_011267078.1\|1720371_1721718_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_007005.1\|WP_003424982.1\|1720033_1720375_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_005895544.1\|1713971_1714751_-\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NC_007005.1\|WP_005895559.1\|1723172_1724033_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_007005.1\|WP_003424996.1\|1708267_1710220_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350677

Protein	Function_ID	Function_description	E-value
NC_007005.1\|WP_123060211.1\|1712212_1712344_-\|CrpP-family-protein	gnl\|CDD\|225672	COG3130, Rmf, Ribosome modulation factor [Translation, ribosomal structure and biogenesis].	0.00679214
NC_007005.1\|WP_011267074.1\|1716592_1717330_-\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	5.89394e-44
NC_007005.1\|WP_032624628.1\|1724382_1724826_+\|DUF4113-domain-containing-protein	gnl\|CDD\|379184	pfam13438, DUF4113, Domain of unknown function (DUF4113). Although the function is not known this domain occurs almost invariably at the very C-terminus of the IMS family DNA-polymerase repair proteins, IMS, pfam00817.	1.9788e-14
NC_007005.1\|WP_011267070.1\|1705405_1706539_-\|TcpQ-domain-containing-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	3.58552e-57
NC_007005.1\|WP_011267079.1\|1721717_1722419_-\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	1.03352e-07
NC_007005.1\|WP_005895538.1\|1712924_1713389_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|169261	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional.	1.24716e-76
NC_007005.1\|WP_011267080.1\|1722415_1723171_-\|hypothetical-protein	gnl\|CDD\|370635	pfam09726, Macoilin, Macoilin family. The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.	0.00250792
NC_007005.1\|WP_011267072.1\|1710222_1712109_-\|hypothetical-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	0.000126388
NC_007005.1\|WP_005895541.1\|1713390_1713975_-\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	3.32955e-66
NC_007005.1\|WP_003317584.1\|1719129_1719447_-\|Arc-family-DNA-binding-protein	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	3.84132e-09
NC_007005.1\|WP_011267071.1\|1706690_1708157_-\|SEC-C-domain-containing-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	1.11743e-09
NC_007005.1\|WP_011267075.1\|1717366_1719127_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	9.61524e-151
NC_007005.1\|WP_011267078.1\|1720371_1721718_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_007005.1\|WP_005895559.1\|1723172_1724033_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.83665e-37
NC_007005.1\|WP_005895544.1\|1713971_1714751_-\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	1.81631e-112
NC_007005.1\|WP_003424996.1\|1708267_1710220_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.07674e-43

>NC_007005.1|WP_017279759.1|1714893_1715166_+|hypothetical-protein
MTQSGAGSDSRGITLIGAQSDASGITQTGAGSDSRGITLIGSESDTSGITQTGAGGDSRGITSVDAESDVSGITQTGADSDSRGITSVDA
>NC_007005.1|WP_005895544.1|1713971_1714751_-|TIGR03761-family-integrating-conjugative-element-protein
MADNFQLNLGSLRSSVNLTLHTHHASRLWFGRQRTEGKPGMIGLSGFANILNRIKRGCEQDDPYSDWFLILIEEKIEASEQEMKDIDARLDEVMASLPPMLSIGQNLSVQPVTLPLFLSTPLAFKAVFLLTAYDELVRRILLASHVGLIDNNAKGQWLDEGAAILRRLFGLSQRWKFSGASRDDFAAKNARSEQAREMYASFGEIPQDILEGTRKSSFAPSPSSASNAAVSEDGDDDGFEETITLGQPHPDKSEPESAE
>NC_007005.1|WP_005895541.1|1713390_1713975_-|DUF3158-family-protein
MINVTANPAHQNQERQSLQQGAFQPLQQDAFVALQHAPFLKGLLKPFKGKGGMLQLAELCRSLEADLNALAEDQVLAQANRHPYTLLPVRMVRQRTSAGTVFLRWQEMGTRQMGVTVWSSLLADPRTPESLLQDLHSMEQQRVALNMQISLVHTIGRQAAECAEKMAQADAVYSGRLQQISQSSGISPHTQKES
>NC_007005.1|WP_005895538.1|1712924_1713389_-|single-stranded-DNA-binding-protein
MGTSVDWEGNLGSAPEFKEFANGNKDPRRLLRLNVYFDNSIPKADGSGFEDRGGFWANVEYWHRDAEHYANLFQKGMRVMIQGRAIIDNWTKDGKEFSALKVQASRVAILPHRVEAVQLAPSQSYNQPQSEQQHTDRNSTQNDAAPHFDDDIPV
>NC_007005.1|WP_017279760.1|1712491_1712722_-|hypothetical-protein
MSDINNFVTYVIRMPNDTLSRTALTTELNEAVISNGGVITGTSVEDEMTLNELFEARMNDLDVQEARRAAKELATT
>NC_007005.1|WP_123060211.1|1712212_1712344_-|CrpP-family-protein
MMLAGAEAALKGIPLHECPYRHPAMRASWLKGFAQEQQQSFKF
>NC_007005.1|WP_011267072.1|1710222_1712109_-|hypothetical-protein
MTAEPICETTLVQTLLDIAKFPERHRAVANTWADHFNVPAEARDEFILHYLTHTSSTRCWCVALHNDGSVARPTVARIGRQLQYFDGQLISAVRFDEKRKVPGHAPSPSQALKLAHQLITHDSADALLTSFCKPARDLARGEAELSIRPLVKYNMGALSSEGRNKRFYAPRGRFYITCIGAALKRFCQNLDQELLHAVRSVQCPSAKLYNWLAQGDRTRRLQALKAQPVLVPVLIVGVGMPWPMIAGGLLVECPWFELQGFCCSWEGETIMDGAGFVGKAVDTGLPLNRVLAWLFSVPTSSIRFLGQQRVYDTGSALSRLNSEGLEAGWEHLIAGSLLGNRRPRTKAEWRFFYSFRSAIPWELLRPLRDMNNLLAGCPTDWADPAWSGIATKLVDFRELFDNLDRAGSCEARNTKRRLYAFLSGLNFRQISNVVDAFHGALADIRARLERDHPPEPSDCFTRWPGLLLGSDPITCSTTGLQIVELRCPADLDQEHRSLGHCIDTYDFRAYSGNCRLLSIRSEGLPLASVELTLRTGRNERVTGDFTPQHLHIAQIRDHENKTPDAHSVVMNAFELFMAAVRSGRMPVLLEWPNMAMKMARYADEKSVFNIRFGEEIVGWANSLLDKGL
>NC_007005.1|WP_003424996.1|1708267_1710220_-|DEAD/DEAH-box-helicase
MASAQLMNKRPVLLRKAIFDGYDFGLSLSYLQGANKLLLRRRGFFIRRSDHPLNQFWRVPKDKLLDDLDVLYRELAELADGKHIESWQAFRDRITSAQSDVHRDAFTWGMKFRLAPLAEGGVILSGDFHPGAVAIAKRMRGVFLSAGKAWRVQGTPELVRSNLILELGLDEDQFEILDTLQELLADGSVKAVNEVTSISLGGHSPESTKSEEEVSDSGIYLASVPSIKNTELTSADIDKALEGFSLMDHQPAGIKHLLQRTSALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFPQAQIAMQTFDASAGWIIVNYERLGDFVMHASRFAVMVIDEAHRLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAELHTLLRLSGHPIGQLPLNEFCERFAGSPEFRKTLRDEISDWMLRRRKDVLPNLKGKQRQTVPVILSQIERDEYNQIMRSDQHRFARLGALRQLLERVKVRILADLMAELDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPEAEESSKKALAEIL
>NC_007005.1|WP_011267071.1|1706690_1708157_-|SEC-C-domain-containing-protein
MLKPILKEPSVNESERVLSAIVSNTFFSLWCYPSLFRSTGKGKEFADLTIYFNNTLVIFSDKGHVNFQEHNDIQLAWSRWYRAAVKESAKQLHGAESLVRNHPDKLFLNSKLEDPFPFDLTKPGLKIHLVAVTGGIGQHAQRFFDSVGPGSNGTLVYHYEVPEDLLLEEPFLVGDVDPRKTFVHVLDESGLKLLFEELCTPEDFIHYLETKERVIRNGTFLSSAGEEETLATYLQEDGGYGFGDLRAPKGYEGHAFRIPEGEWKHYRQTVAYALRYGHKKKAKLWNEIIARFADAITEACVGEAKDLPLIGHSNALQILASENLYSSSFLASAMLDKFDLVPKGIRSARTLPSTAKPDRLYVFVFFPWDDGFASYQDYREARTDCMQLYAYVAMYKYQKAKEILIFGADTKGGQGGSETIFAVDATVPLSSEEREMAQHTMKTLRILDHVVERVIQTSNSGADVGRNEPCPCGSKKKYKKCCMGTGMH
>NC_007005.1|WP_011267070.1|1705405_1706539_-|TcpQ-domain-containing-protein
MIRQLSTLSILALFAGCTSVADKPVGPAFDSSQNPELLSPDLYSSGAKSGQEPMVRYGRYALVNTAPEAEQRDLMAQIIDVSIPANMHPSVQDAMQYVVSRSGYTLCPPSTGHVIILFTRPLPAAQYKLGPMSLRNTLQVLAGPAWQVKVNEVTRGVCFVLRPGYQLPETSKPVALAQPAQPASTGSTSVASTSPAVTVVTAPATGTPFSKDTSPAGQPQTTVVTQAKAQPAASISTPAKEGTPTQQKPTPVSAAPAKATSQTTVTKSIASTSQAPMKPEPAAKPVATVAPQQTWNAPVGSTLRQSVEDWAKRAGWQVIWVPEDLDYPIEAPLSFTGSFSSAVRQIFPLYDNAKRSFVVDGNEGNGQQVLHVSERKK
>NC_007005.1|WP_011267074.1|1716592_1717330_-|DUF2857-domain-containing-protein
MSKKHNPLNEAMVAQILHHLRNGEVRRCLDMGLDPEILAMLQHPSSQSVLLNSAVIWCRVAVDPDMVKRLLANKERTDQENRIVQRALRLGATTPMLQEFFGMSPQEVSLQRVLVGVPGRPGRFRDIPDDAPLWHRFVQLMEEYNVDHTDGVALLDIAMMLTEEVNIPPEEPHIVPPDQITLGLVWNKIQGWLAQDLYPTGKKRKSASLVMLGESRQQSKANANRSRPGQSQANKPVGKVEGDRM
>NC_007005.1|WP_011267075.1|1717366_1719127_-|chromosome-partitioning-protein-ParB
MAGKLTADEISGKLLQGSFSRSGPTVDQLPDPIVDTPMVLTLDEMKAFEQNPRTVTNAKYKEIKDSIRQRGLDHRPTVTRRPGEIKYTINNGGNTRLQILRELYSETGEDRFYRHNVLFRPWDSARGEIIALTGHLSENDLRGSLMFIERAVGIENARAIYEKEAGESISQRELVRRLSADGYPVSQSHISKMQDTVRSLLPVIPSALYSGLGKHQVERLLSLRKAAGQTWITHTEGKEHIPDFEGLFQDVLSLFDGDASEFVYERVQDELISHMQSGTGLSYEQLLLTLSENQNQARRSSVIDTPVSLTPAQQPGPAGLPPEADDGPGSHQQQEPAIQARPSEAGKNKGKQDVSPRSSKTETIDNKPPQAPELTEQERAERLAGHIVSSISTTERVQDVKRQLAALDGENLPDFKTNALISIPVQAGGLHPISDVWYIERILDQPDELRPVIAQLAREIAHLSGINPDSVIDVPGGLGFLCQDPPENLDLSDLANNVLTLLQSISGVYAIALIKESPEQPLDVSEFQFTAALAQLLLGSPRYEDREAILQGRLDDTCIVKLFRLIRLGRRLVELEVGSVSVVQTP
>NC_007005.1|WP_003317584.1|1719129_1719447_-|Arc-family-DNA-binding-protein
MLALNCAAHKTKARLEIAMLNNEAVNIREDDKDEKFVIRLPTGMRGRVRGAAKANHRSMNSEIISRIEATLRHEQEIARLTAVIDVLLKGGTPTSNVIQLPEAGQ
>NC_007005.1|WP_011267077.1|1719624_1720032_-|hypothetical-protein
MQLYHTIEEDLPVQSDREKERLRSDIEKAMADYLSRGGAINQVEASQRSNDSSFIINPEKTAQLKADTSARGRKKTNDLTDTELARLLKAHCTAGASLASAAATLNQTRKRCEAIARRYQIPFRSAAFKKARARS
>NC_007005.1|WP_003424982.1|1720033_1720375_-|hypothetical-protein
MSARNKPLCITHECRTCGHHHPFTAVMPAGKRAPECPSCHSGEVVELELVHPQWSVVASSKAPDSKEYTVVFRMSPGTSRKAFMKKLTDTFVDHEVEILEIQSGDKLGGLGGQ
>NC_007005.1|WP_011267078.1|1720371_1721718_-|replicative-DNA-helicase
MDISHMSPPHSVEAEQAVLGGLMLDNDSWDLIADRIKADDFYRAEHRLIFQSIAGLAESNRPFDVVTVSDSITAIDAAGGLAYLSELAKNTPSVANIKAYAETVSNRAHLRRIISHGYACTREASDPQANASEVQDVIEQQLFALGQGRQTSDFVDVNQMLMQVVDKIDLRFNAGESVVGLPTGLSDLDELTGGLQPADLIIIAARPSMGKTSLALNLVDAALQKDTQATVQVYSLEMPAEAIIYRLISILGHLNLEKLIRGQLEDEDWPKLAMAVQKINSYGDRLVIDDQADLTPSAIRARARRGARRFGKPVLILIDYLQMMKCPGKENRTNEISEISRSLKALAKEFDCPVVALSQLNRELERRPNKRPINADLRESGALEQDADLILFVYRDEVYNPDSEQKGVAELILSKHRNGALGTVRTAFIPQHTRFENLSAAAWQGARS
>NC_007005.1|WP_011267079.1|1721717_1722419_-|DUF2786-domain-containing-protein
MSIDRQRIIDKVIKCFALARSAGASPNEAETALRQGRKLMEQYQLEELEVDAHLAREASVSAGTKRAPASWLHSLAGTCASAFDCDCFAFPSRPGDWHFKFVGLGVSPDLACYAYSALHLQLVSARRQHVSQLKRCNPTTKRRRGRIFAEAWINAVATNVYKFAGRQNAEAQQAISAYLSLHHPTVVEKELVPTSVKGHDLKSQHQGWTQGSRAALHRGVDQHSQSPARIGRA
>NC_007005.1|WP_011267080.1|1722415_1723171_-|hypothetical-protein
MAKTNLTEASGITPQLMQKLNEQYDSSQLRAAQTKLTNTSRELRNLSSGHKMGRGLISRLGDYLSVEQRELLSQAAQLLESVNSHVEHAKEKRVRDEKAVKRRQEARNARAKLLIAATYPLPTESLDQKLELLKTALLFNRIGAYDSFYSAVELNSEIRSTLLTPFSRLIGWGSLTAYRLSCLDSLRIRLVEALTNDISYDDGSEVEDRLAALQSKVRDANAKAALTAEEHETLRLWKEALAVEAVPEVRP
>NC_007005.1|WP_005895559.1|1723172_1724033_-|ParA-family-protein
MYITSLLSTKGGVGKTTLAANIGGFCADAGLRVLLLDMDPVQPSLSSYYPMAQEVSGGIFDLIAHNLTDPERIISRTSIPNLSLILSNDPNNQLISLLLQAADGRLRLASLLKAFEGQFDLILIDTQGARSVMLEMVVLASDLAVSPLPPNMLSAREFNRGTLQMLEGLRPYSRLGLHVPPIKVVVNCLDQTVDARGIHDAIRKTFADNMEVDVLNSTVPASVIFREGSTAGMSAHRLEYKKPSNRRAPSALQVIRELVVELFPQWTDRFEAMTESAVEALVKGGQ
>NC_007005.1|WP_032624628.1|1724382_1724826_+|DUF4113-domain-containing-protein
MGFFGFAPNPDYSLARIYVLIPQAEQCVKYYARVVGGYPTNDVRLMTRAANEVVNRLFRPEFKYSKAEVLLLDLRQPGEFTDDMFAASQLASAERMMGGLDEINTRWGRGALRTGSVPFNPEWAMRRELMSESYTIRLDQLWEVKSL

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Crispr_ID: NC_007005_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007005_3

1813697-1813833

Orphan

Consensus_repeat	Method
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007005_3

>merge|NC_007005|3|1813697-1813833|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGCGTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACGCCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

>NC_007005|3|2|1813697-1813833|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	GTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACG
CCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007005.1\|WP_011267129.1\|1816748_1817681_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
NC_007005.1\|WP_011267128.1\|1813863_1814499_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_007005.1\|WP_011267123.1\|1804187_1804994_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224441
NC_007005.1\|WP_011267120.1\|1799853_1800816_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NC_007005.1\|WP_011267122.1\|1801573_1802563_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_007005.1\|WP_003317453.1\|1814589_1814844_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|234718
NC_007005.1\|WP_011267121.1\|1800835_1801489_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NC_007005.1\|WP_004408362.1\|1817713_1818898_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848
NC_007005.1\|WP_024639961.1\|1806494_1807214_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|132380
NC_007005.1\|WP_011267126.1\|1807673_1811720_+\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_003421288.1\|1803348_1804191_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226616
NC_007005.1\|WP_011267124.1\|1805072_1806140_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270267
NC_007005.1\|WP_011267131.1\|1820016_1820814_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NC_007005.1\|WP_004408565.1\|1802564_1803362_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_007005.1\|WP_003317454.1\|1814843_1815656_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NC_007005.1\|WP_003368369.1\|1815887_1816628_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
NC_007005.1\|WP_011267130.1\|1819159_1820017_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NC_007005.1\|WP_011267132.1\|1820803_1821322_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_004408361.1\|1818939_1819176_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239550
NC_007005.1\|WP_011267127.1\|1811971_1813261_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073

Protein	Function_ID	Function_description	E-value
NC_007005.1\|WP_011267129.1\|1816748_1817681_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NC_007005.1\|WP_011267128.1\|1813863_1814499_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.57106e-78
NC_007005.1\|WP_011267123.1\|1804187_1804994_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	3.57848e-39
NC_007005.1\|WP_004408565.1\|1802564_1803362_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.2364e-59
NC_007005.1\|WP_011267120.1\|1799853_1800816_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.50544e-150
NC_007005.1\|WP_011267122.1\|1801573_1802563_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	8.21531e-147
NC_007005.1\|WP_011267130.1\|1819159_1820017_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20
NC_007005.1\|WP_011267121.1\|1800835_1801489_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.99207e-57
NC_007005.1\|WP_004408362.1\|1817713_1818898_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.50264e-39
NC_007005.1\|WP_024639961.1\|1806494_1807214_+\|UTRA-domain-containing-protein	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	2.74565e-82
NC_007005.1\|WP_003421288.1\|1803348_1804191_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.03847e-111
NC_007005.1\|WP_011267124.1\|1805072_1806140_-\|extracellular-solute-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.13833e-57
NC_007005.1\|WP_011267131.1\|1820016_1820814_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.52189e-37
NC_007005.1\|WP_003317453.1\|1814589_1814844_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46
NC_007005.1\|WP_003317454.1\|1814843_1815656_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
NC_007005.1\|WP_003368369.1\|1815887_1816628_-\|septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	8.00188e-159
NC_007005.1\|WP_004408361.1\|1818939_1819176_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.48988e-09
NC_007005.1\|WP_011267127.1\|1811971_1813261_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0

>NC_007005.1|WP_011267127.1|1811971_1813261_-|M18-family-aminopeptidase
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLSGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>NC_007005.1|WP_011267126.1|1807673_1811720_+|hypothetical-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTSMTTPPPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQQGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>NC_007005.1|WP_024639961.1|1806494_1807214_+|UTRA-domain-containing-protein
MREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIHVRAEVHGD
>NC_007005.1|WP_011267124.1|1805072_1806140_-|extracellular-solute-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSDIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRVEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>NC_007005.1|WP_011267123.1|1804187_1804994_-|alkaline-phosphatase-family-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHDAGRAALYKIECELPALSRPLYECILTGVAPIDSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGIPHDKPVCREIFN
>NC_007005.1|WP_003421288.1|1803348_1804191_-|ABC-transporter-permease-subunit
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWENFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDSRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>NC_007005.1|WP_004408565.1|1802564_1803362_-|ABC-transporter-permease
MSRVERGPASIYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>NC_007005.1|WP_011267122.1|1801573_1802563_-|ABC-transporter-ATP-binding-protein
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILLDGSDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVAEILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVKLVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>NC_007005.1|WP_011267121.1|1800835_1801489_-|HAD-IB-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSEGKLAMEDYMAFSLEPMAGRTPEEIEHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHARKAGWPVHDWS
>NC_007005.1|WP_011267120.1|1799853_1800816_+|NAD(P)H-quinone-oxidoreductase
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSPWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVIDESLV
>NC_007005.1|WP_011267128.1|1813863_1814499_-|RluA-family-pseudouridine-synthase
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERMTFECAAPF
>NC_007005.1|WP_003317453.1|1814589_1814844_-|cell-division-topological-specificity-factor-MinE
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>NC_007005.1|WP_003317454.1|1814843_1815656_-|septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>NC_007005.1|WP_003368369.1|1815887_1816628_-|septum-site-determining-protein-MinC
MSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>NC_007005.1|WP_011267129.1|1816748_1817681_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQEKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQRRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>NC_007005.1|WP_004408362.1|1817713_1818898_+|patatin-like-phospholipase-family-protein
MPDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLRLT
>NC_007005.1|WP_004408361.1|1818939_1819176_-|Rieske-2Fe-2S-domain-containing-protein
MNEPAEFRRPDTFTVHIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>NC_007005.1|WP_011267130.1|1819159_1820017_-|iron-containing-redox-enzyme-family-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>NC_007005.1|WP_011267131.1|1820016_1820814_-|dihydrodipicolinate-synthase-family-protein
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDWYAHIKRELRARGVINSERVVTEEAA
>NC_007005.1|WP_011267132.1|1820803_1821322_-|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFENTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVW

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Crispr_ID: NC_007005_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007005_4

4506222-4506323

Unclear

Consensus_repeat	Method
GCTCCGCATGGGTATGCCGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_007005_4

>merge|NC_007005|4|4506222-4506323|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCTGGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCATGCTCCGCGTGGGTATGCCGTTCT

>NC_007005|4|3|4506222-4506323|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCT	GGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCAT
GCTCCGCGTGGGTATGCCGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_007005.1\|WP_003425465.1\|4504849_4505713_+\|lipoprotein	unknown	unknown	unknown
NC_007005.1\|WP_011268646.1\|4501895_4502732_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NC_007005.1\|WP_011268648.1\|4504051_4504780_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NC_007005.1\|WP_011268654.1\|4514361_4515162_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NC_007005.1\|WP_003402477.1\|4506808_4508146_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NC_007005.1\|WP_011268645.1\|4501193_4501826_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239322
NC_007005.1\|WP_032619965.1\|4515441_4515795_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227262
NC_007005.1\|WP_011268651.1\|4510449_4512822_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NC_007005.1\|WP_164920569.1\|4508296_4509532_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NC_007005.1\|WP_011268657.1\|4516877_4518140_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_007005.1\|WP_011268650.1\|4509543_4510233_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_007005.1\|WP_011268652.1\|4512940_4513354_+\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_003363371.1\|4500189_4500570_+\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_011268653.1\|4513373_4514273_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
NC_007005.1\|WP_011268656.1\|4515852_4516881_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NC_007005.1\|WP_003402493.1\|4499785_4499977_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NC_007005.1\|WP_011268644.1\|4500647_4501049_-\|DUF2177-family-protein	unknown	unknown	gnl\|CDD\|378319
NC_007005.1\|WP_002554403.1\|4503038_4503227_+\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_011268643.1\|4498596_4499562_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NC_007005.1\|WP_003412760.1\|4503394_4503907_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_007005.1\|WP_011268645.1\|4501193_4501826_+\|DsbA-family-protein	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	7.203e-44
NC_007005.1\|WP_011268646.1\|4501895_4502732_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.89195e-109
NC_007005.1\|WP_011268648.1\|4504051_4504780_+\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
NC_007005.1\|WP_003402477.1\|4506808_4508146_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
NC_007005.1\|WP_011268653.1\|4513373_4514273_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.71866e-98
NC_007005.1\|WP_032619965.1\|4515441_4515795_+\|hypothetical-protein	gnl\|CDD\|227262	COG4925, COG4925, Uncharacterized conserved protein [Function unknown].	3.29193e-42
NC_007005.1\|WP_164920569.1\|4508296_4509532_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	2.18575e-50
NC_007005.1\|WP_011268657.1\|4516877_4518140_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.66675e-102
NC_007005.1\|WP_011268654.1\|4514361_4515162_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.46831e-63
NC_007005.1\|WP_011268651.1\|4510449_4512822_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_007005.1\|WP_011268656.1\|4515852_4516881_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	1.40255e-44
NC_007005.1\|WP_003402493.1\|4499785_4499977_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09
NC_007005.1\|WP_011268644.1\|4500647_4501049_-\|DUF2177-family-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	4.24722e-43
NC_007005.1\|WP_011268650.1\|4509543_4510233_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.36791e-76
NC_007005.1\|WP_011268643.1\|4498596_4499562_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.83791e-66

>NC_007005.1|WP_003425465.1|4504849_4505713_+|lipoprotein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>NC_007005.1|WP_011268648.1|4504051_4504780_+|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>NC_007005.1|WP_003412760.1|4503394_4503907_+|hypothetical-protein
MKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>NC_007005.1|WP_002554403.1|4503038_4503227_+|hypothetical-protein
MAAMRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>NC_007005.1|WP_011268646.1|4501895_4502732_-|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIELV
>NC_007005.1|WP_011268645.1|4501193_4501826_+|DsbA-family-protein
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMADRRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATTTGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>NC_007005.1|WP_011268644.1|4500647_4501049_-|DUF2177-family-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLDTPVLGPAIAFYLLYGAGVVFFGVMPALRVQRLSHATLCSGLLGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>NC_007005.1|WP_003363371.1|4500189_4500570_+|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>NC_007005.1|WP_003402493.1|4499785_4499977_-|CsbD-family-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>NC_007005.1|WP_011268643.1|4498596_4499562_-|YihY/virulence-factor-BrkB-family-protein
MIFPHLRKLKVGKVLVRTVNEFLDDEMSTYASALAYQMLFSLFPFLLFLIALIGFLHLPDFFSWLRLQSEFLLPPQALEQVNPVIDQLQQSKGGLLSIGIVIALWTASAGVRLMMSAMNAAYDVVEGRPIWKRLPLSILYTVGIAGMLLAAAAFMVLGPQVMNWIAAQIGMEDFIVTLWTILRWPAIIILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIVASLAFGFYVKTFADYNAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSAEGKDAGEKEAGDGGEESSETVKQHVSGLGRDHSVPLQKADEA
>NC_007005.1|WP_003402477.1|4506808_4508146_-|DEAD/DEAH-box-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>NC_007005.1|WP_164920569.1|4508296_4509532_-|HAMP-domain-containing-protein
MFWKLFLAFWLATSLTFMVGAGLFMFTQSGRGDPSFSTVLDNEVRILQRSGIAAGQALLDAWQPEGQGRVGLYDNQGLLLAGEALENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPTQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCWVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGTDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>NC_007005.1|WP_011268650.1|4509543_4510233_-|response-regulator-transcription-factor
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLLTP
>NC_007005.1|WP_011268651.1|4510449_4512822_+|outer-membrane-protein-assembly-factor-BamA
MISSRLLLSFCLLLSVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTDDLMKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSSNLITRRLGNDGYTFANVNGVPKANDADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGTYASQGQIYYSDRDTEALGGNILITGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>NC_007005.1|WP_011268652.1|4512940_4513354_+|hypothetical-protein
MSREVRQITPDVQEIIQHALRSLLGKGFVIALFGSEDATGAMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVMQTAEAAGRECLSALRERRLRA
>NC_007005.1|WP_011268653.1|4513373_4514273_-|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGRLRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTCSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>NC_007005.1|WP_011268654.1|4514361_4515162_+|NAD(P)H-dependent-oxidoreductase
MNVLIVYAHPEPRSLNGSLKDFAVDHLQNNGHQVQVSDLYQMGWKPIIDANDAPGLESSSRFDPALESQRVFAAGIQPPDIEAEQARLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDQHWGDRYGEGTLAGKRAMLTVTMGGWDSHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSATFARICADYGNRLDTLFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLGIHLRDEDGPADL
>NC_007005.1|WP_032619965.1|4515441_4515795_+|hypothetical-protein
MNVRMYAGDKVVMLHLDDSETARDFVSLLPVELTLEDYAATEKISMLPRKLNVTGAPAGVTPIEGDIAYYAPWGNLAIFHKGFKYSHGLIRLGRVESGIEVIRQPGTVAVRFEVAND
>NC_007005.1|WP_011268656.1|4515852_4516881_-|alpha/beta-hydrolase
MKKILLMLGLLISSYAATGADMSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPKGSNPNVKAPAIVVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKNRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVHKLTDKSAPIEREFYDFYRTPRGEFTPEGQSPELTTHPTLTSNIKFMNFYPFNDIATISPRPMLFIAGSEAHSLEFSEEAYKLAGQPKQLIIVPEAGHVDLYDRVDLIPFDKLGEFFKNNLK
>NC_007005.1|WP_011268657.1|4516877_4518140_-|MFS-transporter
MQAFDSTLKQSEITTHPPAWGAVFSMALCVVVLIASEFMPVSLLTPIAQDLGISQGQAGQAISISGFFAVLTSLLNTLLTGHLDRKPVLLGFSLLLLVSGVIVTLASNGWLFMTGRALLGIAIGGFWSMSTATVMKLVPKQSVAKGLALINGGNALAATVAAPLGSFMGQYIGWRGAFFLVIPLAALAFAWQWLSLPAMRSQPNNRARNPFRLLRNPQVAVGMSAILLLFMGQFAVFTYLRPFLEEITGVSINTLSLMLLALGASGLVGTYLIGRLLHKGLYACLIAIPLLMAVLAVALTGLGHSPQSVAIVLAVWGLIATPAPVAWGLWLSRTLPDDAEAGGGLMVATIQLAITAGAGIGGALFDSLGWWSPFAFGGVLLACSAALAWTARDNALLQEKNTGQGRADKRGSISQRGNTP

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Crispr_ID: NC_007005_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007005_5

5513908-5514002

Orphan

Consensus_repeat	Method
AAACGTTTGGCTGATGAAGCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007005_5

>merge|NC_007005|5|5513908-5514002|CRISPRCasFinder
AAACGTTTGGCTGATGAAGCAGCGGCTGCAGAAGCCAAACGCTTGGCTGATGAGGCAGCGGCTGCAGAAGCCAAACGCTTGGCTGATGAAGCAGC

>NC_007005|5|4|5513908-5514002|CRISPRCasFinder
AAACGTTTGGCTGATGAAGCAGC	GGCTGCAGAAGCCAAACGCTTGGCTGATGAGGCAGCGGCTGCAGAAGCC
AAACGCTTGGCTGATGAAGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007005.1\|WP_011269155.1\|5521504_5522320_+\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|376497
NC_007005.1\|WP_011269152.1\|5516977_5517334_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_162886078.1\|5511306_5511753_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_007005.1\|WP_154686162.1\|5515667_5515808_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_011269151.1\|5516211_5516463_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_110765496.1\|5516467_5516896_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_003304103.1\|5508663_5509014_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NC_007005.1\|WP_011269157.1\|5523095_5527136_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|274093
NC_007005.1\|WP_011269150.1\|5515911_5516160_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223991
NC_007005.1\|WP_011269142.1\|5504337_5506824_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NC_007005.1\|WP_011269149.1\|5515171_5515447_+\|bacteriocin-immunity-protein	unknown	unknown	gnl\|CDD\|319897
NC_007005.1\|WP_011269146.1\|5510987_5511227_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_002556076.1\|5509026_5509275_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_007005.1\|WP_003411788.1\|5502218_5504069_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NC_007005.1\|WP_002551877.1\|5499501_5499717_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NC_007005.1\|WP_011269154.1\|5519228_5520779_-\|effector-protein-hopAB1	unknown	unknown	gnl\|CDD\|370260
NC_007005.1\|WP_011269141.1\|5500195_5502151_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_007005.1\|WP_162884967.1\|5510600_5510915_-\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_103714631.1\|5509612_5510575_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NC_007005.1\|WP_011269156.1\|5522466_5523099_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002

Protein	Function_ID	Function_description	E-value
NC_007005.1\|WP_011269155.1\|5521504_5522320_+\|formate/nitrite-transporter-family-protein	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	1.34094e-89
NC_007005.1\|WP_162886078.1\|5511306_5511753_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.94181e-16
NC_007005.1\|WP_003304103.1\|5508663_5509014_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	2.54014e-05
NC_007005.1\|WP_011269157.1\|5523095_5527136_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|274093	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.	0
NC_007005.1\|WP_003411788.1\|5502218_5504069_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NC_007005.1\|WP_011269142.1\|5504337_5506824_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.751e-115
NC_007005.1\|WP_011269149.1\|5515171_5515447_+\|bacteriocin-immunity-protein	gnl\|CDD\|319897	cd16363, Col_Im_like, inhibitory immunity (Im) protein of colicin (Col) deoxyribonuclease (DNase) and pyocins. This family contains inhibitory immunity (Im) proteins that bind to colicin endonucleases (DNases) or pyocins with very high affinity and specificity; this is critical for the neutralization of endogenous DNase catalytic activity and for protection against exogenous DNase bacteriocins. The DNase colicin family (ColE2, ColE7, ColE8 and ColE9) in E. coli, and pyocin family (S1, S2, S3 and AP41) in P. aeruginosa, are potent bacteriocins where the immunity proteins (Ims) protect the colicin/pyocin producing (i.e. colicinogenic) bacteria by binding and inactivating colicin nucleases. The binding affinities between cognate and non-cognate nucleases by Im proteins can vary up to 10 orders of magnitude.	2.25745e-33
NC_007005.1\|WP_002556076.1\|5509026_5509275_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.00469753
NC_007005.1\|WP_011269150.1\|5515911_5516160_-\|hypothetical-protein	gnl\|CDD\|223991	COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only].	0.00493381
NC_007005.1\|WP_002551877.1\|5499501_5499717_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.32976e-16
NC_007005.1\|WP_011269154.1\|5519228_5520779_-\|effector-protein-hopAB1	gnl\|CDD\|370260	pfam09046, AvrPtoB-E3_ubiq, AvrPtoB E3 ubiquitin ligase. The E3 ubiquitin ligase domain found in the bacterial protein AvrPtoB inhibits immunity-associated programmed cell death (PCD) when translocated into plant cells, probably by recruiting E2 enzymes and transferring ubiquitin molecules to cellular proteins involved in regulation of PCD and targeting them for degradation. The structure of this domain reveals a globular fold centred on a four-stranded beta-sheet that packs against two helices on one face and has three very extended loops connecting the elements of secondary structure, with remarkable homology to the RING-finger and U-box families of proteins involved in ubiquitin ligase complexes in eukaryotes.	1.43007e-45
NC_007005.1\|WP_011269141.1\|5500195_5502151_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_007005.1\|WP_103714631.1\|5509612_5510575_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.75338e-55
NC_007005.1\|WP_011269156.1\|5522466_5523099_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	6.09605e-10

>NC_007005.1|WP_162886078.1|5511306_5511753_-|GNAT-family-N-acetyltransferase
MLLKRVRLAALLDTPTAFGVSYKTAADYDCDQWKQRASSKGTEFWLAFEEGRPVGMVGAAVSESEHFNLIGMWVEPAARGSGIAKELVDIVKARSTERGFDGVFLDVSPENVRASSFYLKQGFVFLDEWEPLESHPHITVQTMVWTRQ
>NC_007005.1|WP_011269146.1|5510987_5511227_-|hypothetical-protein
MPMIDTSPYAAQLADMDAAAWAFDQASKALALAEENDDEPACEAARAAEQRAREAWRVAAQEVGRVVHMLVKMGEGRYS
>NC_007005.1|WP_162884967.1|5510600_5510915_-|hypothetical-protein
MTEEEMRQALFGSGGSTVRLAAPQPQTNTGNNPSAKAAAKRKIAKNFVPRLIVTLRVGNEYEGTTELITHEADTLSRLQAEIDAMKIARKKYRHVKLVSVKHAN
>NC_007005.1|WP_103714631.1|5509612_5510575_+|tyrosine-type-recombinase/integrase
MQEVTKVVSDDHRRLTAVEFQQLARVPSAVEWFANLDNPRTRRAYQNDLTDFSSFIVLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHMYLERSGHHLVDKKVPLFISLRGKSTGAGVSANGIYTVVGAYAKKAGIKVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTFKVKY
>NC_007005.1|WP_002556076.1|5509026_5509275_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MRVETISFLKRNAADLPLDEPLVVTQNGVPAYVVESYADRKRRDESIALVKLLAISSREYSQGKHCSTDELKARLSRRFTQK
>NC_007005.1|WP_003304103.1|5508663_5509014_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNTFALRFTDVAQQSLEDQVEHLAVHQGFSSAAQRIDTLIDAIQDKLLSTPLGYPVSHQLSELGVLHYRELNTDGYRIFYEVRDAGDINVIVVALVLGSKQSVEQALIRYCLLQAI
>NC_007005.1|WP_011269142.1|5504337_5506824_+|bifunctional-diguanylate-cyclase/phosphodiesterase
MRGVINTSDREASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANESFVERTGIPLDEVIGKTPTELNLWAVPGIGPKVLLQLQTGDIHNLEIPFRRKNGETFSGLMSAQPFEHSPIPAVLVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSEKYCLDHSTFDLGIWVDLSERSKLIERMKKHGFVKDMRVRIRNNNGDIRLCELSSQPLIIAGEDCLLTITRDITESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGKTPRLLASGQHDSAFYAAMWHQLAAEGHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVAVFADISSLKQAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYTCDLSDQASERIALEQELRRALERNQLTLAYQPKIDLLTHTMAGAEALIRWNHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGIWRKTCQPFGPLSVNLAGAQLRQTNLLERIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSEGCEQIQGYIISLPLDAEEFRARFLLMNLSDFSDSTAAKPPL
>NC_007005.1|WP_003411788.1|5502218_5504069_+|RNA-polymerase-sigma-factor-RpoD
MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHESAPDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEVPPPVDPKAVKAEGADDDEEESADASDEEDEVESGPDPVIAQQRFGAVSDQMEITRKALKKFGRDDKHAIAEMVALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVRDARMPRADFLRQFPGNEVDESWTDALAKGKSKYAEAIGRLQPDIQRCQQKLSALEEETGLKIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE
>NC_007005.1|WP_011269141.1|5500195_5502151_+|DNA-primase
MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPLLTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGANLRILMRQRLTEITGLTGEAVSHLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTQKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAEKVENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKEWLIEADNLEQQFFDTITSLSARQRERSLEHLISKARQTELSAEEKIQLRELLNRNVPAQTPTSTGA
>NC_007005.1|WP_002551877.1|5499501_5499717_+|30S-ribosomal-protein-S21
MPAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTSERKRKAAAAVKRHAKKVQREQRRAVRLY
>NC_007005.1|WP_011269149.1|5515171_5515447_+|bacteriocin-immunity-protein
MEFKNKYEEYTEAEFLAFLEEFFVNKQNLEGDEYGQYISKLAKHFDDISEHPEKNGLIFYPAEGVEDSPAGVLKVLKEWRAANGKPDFKKA
>NC_007005.1|WP_154686162.1|5515667_5515808_-|hypothetical-protein
MSHHKTPDAPAGMLVLDQRQVSLTEMFAGADDRLAEGEQAHLDALR
>NC_007005.1|WP_011269150.1|5515911_5516160_-|hypothetical-protein
MMKRAAITTMAFLIALPSIYWLLCEAAMMFEMASTGAKSRAELADDFGLGIIGLFVVAPATVIGAVITASFFWWKMRPRRRC
>NC_007005.1|WP_011269151.1|5516211_5516463_-|hypothetical-protein
MTTTTLIQIEQDDPKVIAAAQQRHAELELKMDEHGTELMHSAVMWELGYLFALRTCEVLSITVYDELAAKVESSVEVRPRVTV
>NC_007005.1|WP_110765496.1|5516467_5516896_-|hypothetical-protein
MNTDITGNQIHRSPEFAQTDIGDMSLHRNLHNELEVRRDQILQAATDAEVWQHHTYAKGLVRGLEVGGNITPAQALKLYDIYDAAQADREGVLSDTGRKPSKILSQRSSIGKRPGTPKPSHALGRGRKDRPLSARRSTQSKG
>NC_007005.1|WP_011269152.1|5516977_5517334_-|hypothetical-protein
MILDSFVRATIRHVENVEPCDDPADFYSGPEFDSFTVTVEHGPAEAFLSWFHQKNEYGLCRVGDTAEFIDFGSSDSLDEDKVIEFTFDQFFPLWLKHAANLAKADIAGMASAALRNQN
>NC_007005.1|WP_011269154.1|5519228_5520779_-|effector-protein-hopAB1
MSGINGAGPSNFFWRWRADDEPVTERERDSSSGANLTNSPQLRPESPTVSGRRLLRSNALSRQTREWQETTSASAERATPPVEPRQPPEAQPAERIVAERIVQELVRAGANLNNVRTMLRNVMDNNAVAFSRVEWNILLQHFPDMHTNGISSDSVLANELRQTLRQVVHQQRTQRALAPILSPAPSRPVASSSRSSQRTLLGRFTGWMAPRQTSSSSQATSSTSVDRHPQDLNQLESLRLADAERRNRSANQTDTDEALRRLTQAGVDMERLSTSLGRYIHSFQPAPPDLRRLLESVGIDPDIPEELTLVNNPVLNLNVALNRMLASRQATTESSSVFPSRAGDTRVRTLPVMPEREDNENNVAYGVRLLRLNPEAEVERVVEAFITDPSSRPEVVADIHAVLRSITSQFRQLRTISKADAESQDFRDAADYPDDPTSCLFGEDLSLSNPHQQVIGLAGESTDILQPYSQEGNKALRFMDMKKLAEHLASKPVHPMNRDRLDDKNIAGYAFRVVPD
>NC_007005.1|WP_011269155.1|5521504_5522320_+|formate/nitrite-transporter-family-protein
MSLNTPQQIAEIAVESGVKKAHLGLSSLMILGFLAGAFIALGFLLDIHVSTMIPHEWASLGNLLGAVVFPVGLILVVLAGGELLTGNMMSLPMALFAGRIGLGQLVRNWVLVTLANLIGALFVAYCFGHVVGLTEGAFMAKTVAIANAKVGASFEQAFISGIGCNWLVCLAVWLSYASKDVIGKVVGMWFPVMAFVAIGFQHIVANMFVIPAAIFAGALSWAQFGDNFVPVFLGNAVGGAVFVGLAYHLAFSNKATQPAELSRTSGAQTPE
>NC_007005.1|WP_011269156.1|5522466_5523099_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MKRGASWAFDEDGQLAPPKPFPRQNVLLVSCVTRPGCARDEARSHIRACVRTAVEQWLELPSGAITFISAPGAAPRLLIDGLPEPGFSISHEAGCSLAAINLQGAVGVDLMQIQAVPDWHAVAQDYLGADVATRLSGLPESVRTIAFAKAWCRREAFLKLHGLALEEWTAVGGLQGVGVEVELEEGMVGVVALSQVLMEYMNQAERRTAP
>NC_007005.1|WP_011269157.1|5523095_5527136_-|non-ribosomal-peptide-synthetase
MNNLNLSTLGQNEQSLDVIYGPIQHELLREEVLADLLEASARRNPQHVALIFGERQISYGELDRQADQVASALIGTGVRPGHIVGLWLPRGIELLVMQAGIAKAGAAWLPLDQDTPVERLQICLDDASAVGLVSCDALMPVLADTGLKVWTAEHLLTPTDAALVRRSGVLPDHPAYVIYTSGSTGKPKGILISQRSICHFLRSENAILGIRANDRVYQGFSVAFDMSFEEIWIAYLVGATLWIGPKETSGDPETLPRLLNEQRISVLHAVPTLLALFSEDVPGLRLINLGGEMCPESLVDRWATPNRQMFNTYGPTEATVSASLARLSRGRPVSIGTPLPNYGLLVIANDPAVGSSLAPSLLPRGEVGELCIIGPGLAEGYLGRPDLTEEKFLPNPWSTGYHDARLYRTGDLARIDHDGQVQCLGRADDQVKIRGFRVELGEIEALLAQQPGVGTVAVLLRNEAGVDQLIAYLVSDTSTPSAFTSQLRKTLQAQLPPYMVPGHFELLDSMPRLTSGKIDRKALKVLPLTVDAKAASAESDVAQTEGEIALFAALSTLFPGMPIRRDADFFTDLGGHSFFAARLASALRANPRFAQVTVRDIYQHRRIGAIAEVLDQAPQEMDAPVDWTPPSAWRRWRCGVAQALALPVMVSLRMTQWLAPFFTYHLLTGSPDDSVTLATLASISVFLIATVLQFFIALAAKWLIVGRLKPGIYPLWGVTYFRWWAADRMVDSAPTYLLSGSSLYPLWLRALGAKIGQDVIIGGATVRAHDLLEIGDGVSVGNGVSFENARVERGQLHLGRIALQDNACVGSYVIMEGNTAVGPWGHLEAQSAMADGREVPAGRIWQGSPARDVGAFDTLGQPARPVTSPARLRAEKLFFAFGVLLIATLFFIPVFPTFFLIDWFDTQNVLPWFEGSGPLGQLARYFLLAFPASAVLIVATVLASAALRWLVFPRLKPGRYEVHSNTYCAKWLISQIQEASLNVLSGIYATVYSPFWYRLLGAKVGRDAEISSAQGVIPEMLTLGDETFIADAVMLGDERIDGGWMTMQPTVVSHRSFVGNGGYIADGTVLPENVLIGVHSCAPHNSKIVDGDTWLGSPPIHLPAREQVSGAPESLTFKPSPLRRLARGLVEGVRIVTPHAVVIAVGYTVMLDLMPLADDERWGAVLAYLAVIGMAYSVGNFLLIVALKWLVMGRYRKRADPMWTPFVWLSEGITSLYEGMAAPNFMRYLRGTPWLPLAFNVLGCKIGRGVYMDTTDITEFDCVSIGADSELNAGACPQTHLFEDRVMKIDHVSIGKRVYMGPRSAVLYSAVVGNDAHLGALTLVMKGEHIPAGSRWAGCPASPDRA

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Crispr_ID: NC_007005_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007005_6

5769352-5769438

Orphan

Consensus_repeat	Method
GGGCAGAATCAAGAGCGGACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007005_6

>merge|NC_007005|6|5769352-5769438|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTGCGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGAGGGCAGAATCAGGAGCGGACTTG

>NC_007005|6|5|5769352-5769438|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTG	CGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGA
GGGCAGAATCAGGAGCGGACTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007005.1\|WP_011269266.1\|5760704_5761142_-\|DUF4399-domain-containing-protein	unknown	unknown	gnl\|CDD\|373020
NC_007005.1\|WP_003397169.1\|5756825_5757491_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|182650
NC_007005.1\|WP_011269269.1\|5764267_5766655_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NC_007005.1\|WP_004407359.1\|5763055_5763997_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NC_007005.1\|WP_024660159.1\|5761280_5761916_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NC_007005.1\|WP_002555767.1\|5776393_5777752_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_007005.1\|WP_011269272.1\|5772453_5773548_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_007005.1\|WP_011269274.1\|5774960_5776325_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NC_007005.1\|WP_004407356.1\|5769460_5770342_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NC_007005.1\|WP_011269265.1\|5759126_5760356_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_007005.1\|WP_011269273.1\|5773719_5774817_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_007005.1\|WP_003413528.1\|5778346_5779723_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_007005.1\|WP_003420191.1\|5762057_5762816_+\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|378261
NC_007005.1\|WP_104683579.1\|5767397_5768749_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_007005.1\|WP_011269268.1\|5762867_5763059_+\|hypothetical-protein	unknown	unknown	unknown
NC_007005.1\|WP_011269276.1\|5780857_5781937_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NC_007005.1\|WP_164920523.1\|5757571_5758966_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354
NC_007005.1\|WP_011269271.1\|5771255_5772398_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NC_007005.1\|WP_024642508.1\|5780181_5780826_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_007005.1\|WP_003372160.1\|5770338_5771259_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646

Protein	Function_ID	Function_description	E-value
NC_007005.1\|WP_011269266.1\|5760704_5761142_-\|DUF4399-domain-containing-protein	gnl\|CDD\|373020	pfam14347, DUF4399, Domain of unknown function (DUF4399). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 135 and 1079 amino acids in length.	2.62307e-47
NC_007005.1\|WP_003397169.1\|5756825_5757491_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|182650	PRK10691, PRK10691, fumarylacetoacetate hydrolase family protein.	3.87651e-78
NC_007005.1\|WP_011269269.1\|5764267_5766655_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	0
NC_007005.1\|WP_004407359.1\|5763055_5763997_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.64316e-34
NC_007005.1\|WP_024660159.1\|5761280_5761916_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	3.29522e-47
NC_007005.1\|WP_002555767.1\|5776393_5777752_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
NC_007005.1\|WP_011269272.1\|5772453_5773548_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_007005.1\|WP_004407356.1\|5769460_5770342_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.58132e-118
NC_007005.1\|WP_011269265.1\|5759126_5760356_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_007005.1\|WP_011269273.1\|5773719_5774817_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_007005.1\|WP_003413528.1\|5778346_5779723_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
NC_007005.1\|WP_003420191.1\|5762057_5762816_+\|DUF2059-domain-containing-protein	gnl\|CDD\|378261	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.	0.00181793
NC_007005.1\|WP_104683579.1\|5767397_5768749_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	7.67424e-63
NC_007005.1\|WP_011269274.1\|5774960_5776325_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NC_007005.1\|WP_011269276.1\|5780857_5781937_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.88793e-30
NC_007005.1\|WP_164920523.1\|5757571_5758966_-\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.70901e-125
NC_007005.1\|WP_011269271.1\|5771255_5772398_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NC_007005.1\|WP_024642508.1\|5780181_5780826_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.6796e-09
NC_007005.1\|WP_003372160.1\|5770338_5771259_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152

>NC_007005.1|WP_104683579.1|5767397_5768749_+|IS3-family-transposase
MAKYSEQFKLTVVKAYLEGNIGFRKVASQFSIDFSLLRRWVANYKSHGHTGHRKPGLRYSKAFKRSVLEHKREHGLSLRQTAAHFGIGDPGQIVIWEQQHYSDGLAPRVPTRRKPAAMPKKPYPTEPVTADDTHKTRDQLMAELEYLRMENAYPKKVGRVEGAATTAKEKALIVKQLRNRFPMCALLTLAGLARSTFYYQAQVQSRPDPDAALKQEIERVYHEERGLYGARRITAVIRNSGTLINKKVVERLMAELGLRSVVRPKKYRSYKGTVGKIAPNLLERKFTAQRPNQKWVTDVTEFKVANRKLYLSPVMDLYNGEIVAYEVSTRPCFELVTNMLDKALQQLQDEPKLVMHSDQGWQYQHAQYRQKLAVKGVKQSMSRKGNCLDNAAMESFFGTLKSEFFYLKRFESIEELKAGLDEYIRYYNNDRIKLKLNGLSPVKYRAQAAS
>NC_007005.1|WP_011269269.1|5764267_5766655_+|penicillin-acylase-family-protein
MKRSLFILAIIIALLAGGAGWYVNSKLPVRDGEIAMSRLQAPVTLRYDERGVPHIRAENEADLYRALGYAHAQDRLFQMEMLRRLARGELAEVLGPNLLETDKLFRSLRIREHADAYVARQDKNTPTWKALEAYIDGINQYQDTHARPMEFDALGIPRRRFTPEDTVSIAGYLAYSFAAAFRTEPLLTYVRDQLGPEYLKVFDLDWHPDGMLDSKPALADADWKGLNQLAQLSHKALEDAGLPQFEGSNAWVISGSRTQSGKPILAGDPHIRFSVPSVWYEAQLSAPGFELYGHFPALNPFALLGHNMDFGWSLTMFQNDDVDLIAEKTNPDNPNQVWYHGQWVDMKRTEQQIAVKGQAPVTLTLLESPHGPIVNNVMGKNAGQAPIAMWWSFLVSANPVLDGFYEANRADTLDKMRSAAEKIQSPGLNIVWANAKGDIGWWAAAQLPIRPQGVNPTFILDGSTAQADKLGFYPFSANPHEENPARGYIVSANFQPLSPTGMQIPGYYNPAERGQELNRQLSDASVKWDLAASKALQLDTQTDYAPSILRPLIPVLRSVVSDPDELALVERLASWKGDYPVDSVGATLFNQFLFDLTEETFHDELGDAMFETLLSSRVMDAALPRLAADADSPWWNNRNSPHEESRANTVKVAWRASVSHLRSLYGTNPDEWVWGKAHTLTQGHPLGSQKPLDMIFNVGPYAAPGTHEVPNNLSSSIRPAPWPVGYGPSTRRLIDFADPAHSLGINPVGQSGVPFDKHYSDQAKAFVNGEYLPQRFSEKDVAEHTEGVLRLVPGA
>NC_007005.1|WP_004407359.1|5763055_5763997_-|alpha/beta-hydrolase
MSATFDPDNLRASLLPLSVIDPLSMEGLAYQRFYGLAGLCGENVIRSWLGRLDVAGYEVVGQVWLPDSPVATLFLFHGFYDHMGLYRHVIEWALEQRFAVIACDLPGHGLSSGSRACINDFAEYQLVLQRLLLEAEGLGLPHPWHLCGQSMGGAIVTDHLLHQGADSPAQGEVILLAPLVRPRAWGWSRLSYHLLRPFVNGIARRFTENSNAPAFLPFLMADPLQPLRLPTAWVGALAQWIVRVESAPRSLRSPLIIQGEADMTVDWSHNLAILKDKFSQPQILMLGHARHHLANETPELRARYFDFLKGRLR
>NC_007005.1|WP_011269268.1|5762867_5763059_+|hypothetical-protein
MKDSLALLATGIVMAFFAWLFWSSLGQDAFAVFGALMLVITAVDNSRLRRQVKALQAGKTEKL
>NC_007005.1|WP_003420191.1|5762057_5762816_+|DUF2059-domain-containing-protein
MRRLFVLLLMFCTSPAWADSYDQLYKSAGWPEQRAHFNDALKAAQQRYSNNLPPAVYQALVNNSNQRFAPQAMDQRASKRLRESLKDPAPSLQFFQSPLGRKIVNAELTATRADQLAKHAQGLPHIEADATRQLLIGHLAQALPAREAGAEVSLAIAGVAADSLSQMIPGLFGGGQAQGMLEGQRERLMAQMSADLNNTLLYVYRDLSDPELEEFSTFAESPEGKAYYQAALAAIRAGLAVGQSASSLNPGQ
>NC_007005.1|WP_024660159.1|5761280_5761916_-|2OG-Fe(II)-oxygenase
MHAMRIPSDHPLLLRIVDDLAANGWSQQNIFLPEALTLELEQECRKRAAEGELEPAAIGKGPALEIREGIRGDRIQWLEPGQVQCCDRYLELMDSLRQALNRGLFLGLEDYESHFALYPPGARYLRHVDRFRDDDRRMVSAVLYLNSAWLPEHGGQLRMYLKDEVAYDVQPAGGCLVVFLSGEIPHEVMPASRDRLSLTGWFRRRGNELFQ
>NC_007005.1|WP_011269266.1|5760704_5761142_-|DUF4399-domain-containing-protein
MKSLFSGTMVAGLLLSASMLASAADIPRTAAPEGAEVYIISPKDGETVTSPFKVQFGLKGMGVAPAGVDVPETGHHHLLIDVKDQPAMNAPLPVSDNIRHFGKGQTETEINLPPGQHTLQLLMGDKGHMPLNPSVESKKITINVK
>NC_007005.1|WP_011269265.1|5759126_5760356_+|phosphoglycerate-dehydrogenase
MSKTSLDKSKIKFLLLEGVHQSAVDVLKAAGYTSIEYHTKSLPEAELKEKIADAHFIGIRSRTQLTEELFDCAKKLVAVGCFCIGTNQVDLNAARERGIAVFNAPYSNTRSVAELVLAEAILLLRGIPEKNASCHRGGWIKSAANSFEIRGKKLGIIGYGSIGTQLSVLAEGLGMQVYFYDTLTKLPLGNATQVSSLNELLGMSDIVTLHVPETSETQWMIGEKEIRAMRKGSILINAARGTVVELDALADAIKDKHLIGAAIDVFPVEPRSNDDIFESPLRGLDNVILTPHIGGSTAEAQANIGLEVAEKLVKYSDNGTSVSSVNFPEVALPAHPGKHRLLHIHENIPGVLSEINKVFAENGINISGQFLQTNEKVGYVVIDVDAEYSDLAQAKLQQIKGTIRSRVLF
>NC_007005.1|WP_164920523.1|5757571_5758966_-|FAD-binding-protein
MTDRVLIDELQTLVDPGKVLTDAGSLETYGKDWTKQFTPAPLAIVFPKTTEQVQAIVRWANERLVALVPSGGRTGLSAAAVAANGEVVVSFDYMNQVLDLNLTDRTAVCQPGVITRQLQALAEDNGLYYPVDFASSGSSQIGGNIGTNAGGIKVIRYGMTRNWVAGLKVVTGKGDLLELNKDLIKNATGYDLRQLFIGAEGTLGFVVEATMRLDRAPKNLTAMVLGTSDFNSIMPVLHAFHGKLDLTAFEFFSDKSFARVMARGDVPSPFDTPCPFYVLLEFEATTEDLADQALATFEHCVEQGWVLDGVMSQSEQQLRNLWKLREYISETISHFTPYKNDISVTVSKVPEFLAEIDAIVAEHYPDFEVLWYGHIGDGNLHLNILKPESLDKDEFFVKCARVNKWVFETVEKYNGSISAEHGVGMTKRDYLTYSRSPVEIEYMKALKAVFDPNGIMNPGKIFAV
>NC_007005.1|WP_003397169.1|5756825_5757491_-|fumarylacetoacetate-hydrolase-family-protein
MSYQHKYVDGTNIHFPLGKVVCIGRNYAEHAKELGNAVPTEPLLFMKPGSAVVALEGGFSIPADRGSVHYEAEIVVLIGKPLSKNPSREEVLDAISGFAPGLDLTLRDVQSRLREKGLPWELAKCFDGAAVIPPFVPAETFPDLEDIGIRLTLNGKVVQDGNSNMMLNPIVPMIQHMAANFSLQAGDLIMTGTPAGVGPFEAGDQIALELVGQTPFESVVR
>NC_007005.1|WP_004407356.1|5769460_5770342_-|ABC-transporter-permease-subunit
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQMIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQAIEESAADAWKQPDPRRAPAA
>NC_007005.1|WP_003372160.1|5770338_5771259_-|ABC-transporter-permease-subunit
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>NC_007005.1|WP_011269271.1|5771255_5772398_-|polyamine-ABC-transporter-ATP-binding-protein
MAVASGAYKKALEGGQQPKEVLVRIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>NC_007005.1|WP_011269272.1|5772453_5773548_-|polyamine-ABC-transporter-substrate-binding-protein
MSISILSKALLAAAGLTLTLGAQAESTVHIYNWSDYIGKTTLADFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKEAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKQASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPLKVQRLMTRSWTKVKSGE
>NC_007005.1|WP_011269273.1|5773719_5774817_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTIAKFEKESGIKVVYDVFDSNETLEAKLLAGKSGYDVVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGE
>NC_007005.1|WP_011269274.1|5774960_5776325_-|aspartate-aminotransferase-family-protein
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLRPDMMTIAKGLTSGYVPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAQIDELVEKARTCLDLTLAVLQG
>NC_007005.1|WP_002555767.1|5776393_5777752_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>NC_007005.1|WP_003413528.1|5778346_5779723_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NC_007005.1|WP_024642508.1|5780181_5780826_+|TetR/AcrR-family-transcriptional-regulator
MTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>NC_007005.1|WP_011269276.1|5780857_5781937_-|RHS-repeat-associated-core-domain-containing-protein
MASLDPIMLCTYRYDALDRLASSSPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSPSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPAMTWEYRVKKAEEFHHPVSTAVPTDFEVAKIYLERHLKRLLDVENTILFYKSNRAVDTGNFIEAGPSQFYKAILLRDINTFKIYAAGMSRKHRKAIRKQR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_007005_1	1.1\|478179\|52\|NC_007005\|CRISPRCasFinder	478179-478230	52	NC_007005.1	478385-478436	2	0.962
NC_007005_1	1.1\|478179\|52\|NC_007005\|CRISPRCasFinder	478179-478230	52	NC_007005.1	478575-478626	2	0.962

1. spacer 1.1|478179|52|NC_007005|CRISPRCasFinder matches to position: 478385-478436, mismatch: 2, identity: 0.962

caggagcgaccggggcggcgacccgctttgttcgcgaaggctcgtcatgcag	CRISPR spacer
caggagcgaccggggcggcgatccgccttgttcgcgaaggctcgtcatgcag	Protospacer
*********************.****.*************************

2. spacer 1.1|478179|52|NC_007005|CRISPRCasFinder matches to position: 478575-478626, mismatch: 2, identity: 0.962

caggagcgaccggggcggcgacccgctttgttcgcgaaggctcgtcatgcag	CRISPR spacer
caggagcgaccggggcggcgatccgccttgttcgcgaaggctcgtcatgcag	Protospacer
*********************.****.*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1685718 : 1695080

uncultured_Caudovirales_phage(71.43%)

integrase

attL 1682146:1682161|attR 1696836:1696851

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1682146:1682161	attL	NA	NA	NA	NA
WP_011267054.1\|1685718_1686405_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	5.0e-33	34.7
WP_011267056.1\|1687850_1688312_-	DUF411 domain-containing protein	NA	NA	NA	NA
WP_011267057.1\|1688347_1688902_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	4.7e-58	64.4
WP_162279534.1\|1688931_1689624_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	7.3e-101	80.4
WP_011267059.1\|1689665_1690136_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.5e-49	59.0
WP_011267060.1\|1690144_1691434_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.3e-172	74.6
WP_017278814.1\|1691455_1691806_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	3.5e-35	58.4
WP_011267062.1\|1692008_1692284_+	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_011267063.1\|1692283_1693237_+	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA
WP_011267065.1\|1694120_1695080_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	3.8e-07	27.8
1696836:1696851	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3337286 : 3407281

Pseudomonas_phage(59.65%)

tail,capsid,terminase,integrase,tRNA

attL 3397428:3397449|attR 3413100:3413121

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011267938.1\|3337286_3338786_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
WP_003400967.1\|3338778_3339171_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003370754.1\|3339504_3340470_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011267939.1\|3340693_3341158_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_011267940.1\|3341163_3342147_-	oxidoreductase	NA	NA	NA	NA
WP_011267941.1\|3342196_3342856_-	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_011267942.1\|3342991_3344071_+	nitronate monooxygenase	NA	NA	NA	NA
WP_011267943.1\|3344172_3344940_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011267944.1\|3344940_3345621_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_011267945.1\|3345624_3346713_+	molybdenum ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-19	30.3
WP_011267946.1\|3346802_3347873_+	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	4.8e-43	33.3
WP_011267947.1\|3348312_3348675_+	hypothetical protein	NA	NA	NA	NA
WP_011267948.1\|3348721_3350002_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	7.4e-107	47.9
WP_011267949.1\|3349988_3350420_-	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	7.4e-19	44.1
WP_011267950.1\|3350541_3351231_+	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.0e-57	48.9
WP_011267951.1\|3351259_3352504_-	SGNH/GDSL hydrolase family protein	A0A059VA35	Pseudomonas_phage	2.6e-205	87.0
WP_011267952.1\|3352500_3352713_-	hypothetical protein	A0A059VK06	Pseudomonas_phage	3.6e-11	52.9
WP_011267953.1\|3352725_3353253_-	DUF2514 domain-containing protein	A0A059VF51	Pseudomonas_phage	9.0e-59	80.0
WP_011267954.1\|3353249_3353783_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	4.5e-90	93.2
WP_162886426.1\|3353889_3354063_+	hypothetical protein	NA	NA	NA	NA
WP_011267955.1\|3354078_3354447_-\|tail	tail fiber assembly protein	A0A059VFX9	Pseudomonas_phage	2.1e-38	75.9
WP_011267956.1\|3354460_3354775_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	2.4e-19	48.5
WP_011267957.1\|3354774_3355878_-\|tail	tail fiber protein	A0A059VJZ6	Pseudomonas_phage	1.3e-152	75.6
WP_011267958.1\|3355903_3356590_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	3.0e-38	39.5
WP_110765270.1\|3356589_3356898_-	hypothetical protein	NA	NA	NA	NA
WP_011267959.1\|3356906_3360491_-\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	61.9
WP_011267960.1\|3360546_3361158_-	hypothetical protein	NA	NA	NA	NA
WP_011267961.1\|3361184_3361763_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	1.9e-86	83.2
WP_011267962.1\|3361819_3362155_-	hypothetical protein	NA	NA	NA	NA
WP_110765271.1\|3362329_3362623_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_110765272.1\|3362792_3363095_+	hypothetical protein	NA	NA	NA	NA
WP_011267964.1\|3363124_3363889_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	4.3e-126	80.4
WP_011267965.1\|3363891_3364641_-\|tail	phage minor tail protein L	A0A2H4J4Q5	uncultured_Caudovirales_phage	2.1e-125	84.7
WP_011267966.1\|3364650_3364989_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	8.3e-50	79.5
WP_011267967.1\|3364991_3368477_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	1.4e-176	44.4
WP_011267968.1\|3368487_3368736_-	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	1.8e-25	68.3
WP_011267969.1\|3368798_3369182_-\|tail	phage tail assembly chaperone	A0A2H4J9Y6	uncultured_Caudovirales_phage	2.6e-39	61.4
WP_011267970.1\|3369185_3369842_-\|tail	phage tail protein	A0A2H4J6K6	uncultured_Caudovirales_phage	2.2e-99	85.8
WP_011267971.1\|3369913_3370324_-	DUF4128 domain-containing protein	A0A2H4J130	uncultured_Caudovirales_phage	1.0e-33	54.8
WP_011267972.1\|3370320_3370977_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	5.5e-82	70.2
WP_011267973.1\|3370973_3371342_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.8e-43	74.2
WP_110765273.1\|3371372_3371672_+	hypothetical protein	NA	NA	NA	NA
WP_011267974.1\|3371673_3372174_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	5.5e-66	77.6
WP_011267975.1\|3372177_3372627_-	hypothetical protein	NA	NA	NA	NA
WP_011267976.1\|3372651_3373602_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	8.9e-158	88.5
WP_011267977.1\|3373614_3374343_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.5e-117	92.1
WP_164920492.1\|3374426_3374867_-	hypothetical protein	NA	NA	NA	NA
WP_011267979.1\|3374928_3376017_-\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	3.0e-149	72.9
WP_011267980.1\|3375991_3377413_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	6.8e-218	78.3
WP_011267981.1\|3377409_3378711_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	9.1e-145	58.7
WP_011267982.1\|3378697_3379159_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	9.0e-47	75.0
WP_011267983.1\|3379190_3379814_-	hypothetical protein	A0A059VJU8	Pseudomonas_phage	2.3e-109	92.3
WP_164920493.1\|3379854_3380352_-	hypothetical protein	NA	NA	NA	NA
WP_011267985.1\|3380399_3380849_-	proteasome subunit beta	A0A1B0VNC4	Pseudomonas_phage	4.5e-43	63.6
WP_011267987.1\|3381322_3381553_-	hypothetical protein	A0A1S6UB66	Serratia_phage	2.2e-17	63.4
WP_011267989.1\|3382184_3382523_-	lipoprotein	A0A059VJW1	Pseudomonas_phage	4.4e-35	84.0
WP_011267990.1\|3382522_3382894_-	chemotaxis protein	A0A059VK40	Pseudomonas_phage	4.4e-44	81.3
WP_011267991.1\|3383063_3383420_+	hypothetical protein	NA	NA	NA	NA
WP_011267992.1\|3383545_3384127_-	hypothetical protein	A0A059VF83	Pseudomonas_phage	1.5e-107	95.9
WP_011267993.1\|3384123_3384708_-	recombination protein NinG	A0A059VA66	Pseudomonas_phage	2.9e-90	81.4
WP_011267994.1\|3384707_3385106_-	recombination protein NinB	A0A059VG13	Pseudomonas_phage	2.7e-71	97.7
WP_011267995.1\|3385196_3385478_-	hypothetical protein	NA	NA	NA	NA
WP_011267996.1\|3385474_3386272_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.0e-90	67.7
WP_011267997.1\|3386258_3387236_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	1.2e-112	71.2
WP_011267998.1\|3387269_3387692_-	phage regulatory CII family protein	A0A2D1GNM7	Pseudomonas_phage	2.7e-50	70.0
WP_110765274.1\|3387790_3388000_-	helix-turn-helix domain-containing protein	H2BD64	Pseudomonas_phage	2.4e-15	68.9
WP_011267999.1\|3388087_3388738_+	LexA family transcriptional regulator	K7P850	Enterobacteria_phage	1.0e-43	46.5
WP_016567843.1\|3388783_3389023_+	hypothetical protein	NA	NA	NA	NA
WP_162886394.1\|3389057_3389366_+	hypothetical protein	NA	NA	NA	NA
WP_162886393.1\|3389669_3390770_-	virulence RhuM family protein	NA	NA	NA	NA
WP_110765276.1\|3390805_3391069_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_164920562.1\|3391770_3392451_+	hypothetical protein	A0A1B0YZY3	Pseudomonas_phage	5.0e-78	62.3
WP_164920494.1\|3392991_3393282_+	hypothetical protein	NA	NA	NA	NA
WP_011268005.1\|3393302_3393710_+	hypothetical protein	NA	NA	NA	NA
WP_011268006.1\|3393706_3393898_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.1e-13	61.9
WP_165446457.1\|3393894_3394065_+	hypothetical protein	NA	NA	NA	NA
WP_011268007.1\|3394227_3395115_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	5.4e-80	66.4
WP_011268008.1\|3395111_3396773_+	hypothetical protein	A0A2H4J6P1	uncultured_Caudovirales_phage	1.2e-165	57.5
WP_011268009.1\|3396769_3397132_+	hypothetical protein	NA	NA	NA	NA
WP_011268010.1\|3397213_3397597_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	1.2e-20	50.5
3397428:3397449	attL	NA	NA	NA	NA
WP_011268011.1\|3398124_3398907_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_011268012.1\|3399003_3400125_+	site-specific DNA-methyltransferase	A0A059VK11	Pseudomonas_phage	4.5e-140	64.2
WP_011268013.1\|3400132_3400780_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_011268014.1\|3400865_3401723_+	phosphoadenosine phosphosulfate reductase family protein	A0A2K9VK66	Klebsiella_phage	7.8e-28	35.7
WP_011268015.1\|3401767_3403822_+	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	2.5e-237	58.6
WP_011268016.1\|3404193_3404508_+	hypothetical protein	A0A059VA44	Pseudomonas_phage	7.5e-53	85.6
WP_011268017.1\|3404504_3405149_+	hypothetical protein	A0A059VF56	Pseudomonas_phage	5.8e-68	58.6
WP_110765278.1\|3405151_3405364_-	hypothetical protein	NA	NA	NA	NA
WP_011268018.1\|3405488_3405950_+	hypothetical protein	A0A0U4IIZ7	Pseudomonas_phage	6.7e-58	70.9
WP_110765279.1\|3406030_3406246_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_011268019.1\|3406246_3407281_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.1e-96	55.2
3413100:3413121	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3793116 : 3803572

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002553978.1\|3793116_3793788_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.8
WP_011268260.1\|3794139_3795048_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011268261.1\|3795033_3795813_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011268262.1\|3795829_3797131_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-60	36.0
WP_011268263.1\|3797365_3797758_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.7e-57	82.3
WP_003405065.1\|3797759_3798122_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.2e-35	60.0
WP_011268264.1\|3798121_3798421_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	5.5e-29	61.6
WP_011268265.1\|3798417_3798753_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.6e-43	77.5
WP_011268266.1\|3798749_3799751_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.8e-164	84.2
WP_011268267.1\|3799847_3800846_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003405073.1\|3800896_3802291_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003317946.1\|3802291_3803572_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8

DBSCAN-SWA_4

5428771 : 5515447

Pseudomonas_phage(44.74%)

tail,transposase,lysis,bacteriocin,plate,integrase,tRNA

attL 5419894:5419909|attR 5526515:5526530

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5419894:5419909	attL	NA	NA	NA	NA
WP_011269097.1\|5428771_5429983_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003401947.1\|5430184_5431612_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_011269098.1\|5431615_5432710_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5432772_5433123_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_011269099.1\|5433387_5434422_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003316309.1\|5434555_5434984_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_011269100.1\|5435069_5435984_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_011269101.1\|5436040_5436817_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011269102.1\|5436920_5437259_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_011269103.1\|5437380_5438028_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003316303.1\|5438097_5438892_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003401957.1\|5439134_5439557_-	OsmC family protein	NA	NA	NA	NA
WP_003401959.1\|5439758_5440403_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_011269104.1\|5440414_5441110_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_011269105.1\|5441144_5441981_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.0e-68	56.2
WP_110765503.1\|5441977_5443027_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.3e-111	58.0
WP_004415847.1\|5443048_5443648_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_024665293.1\|5444060_5444573_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	6.1e-28	48.4
WP_011269108.1\|5444569_5445115_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	6.4e-68	72.8
WP_011269109.1\|5445229_5445796_-\|tail	tail fiber assembly protein	B5TK80	Pseudomonas_phage	1.1e-41	45.3
WP_162885217.1\|5445803_5447264_-\|tail	phage tail protein	B5TK79	Pseudomonas_phage	7.2e-90	40.7
WP_010439013.1\|5447274_5447874_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.7e-85	72.4
WP_003401993.1\|5447861_5448902_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.4e-132	70.1
WP_011269111.1\|5448891_5449290_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	4.4e-42	62.9
WP_003372720.1\|5449286_5449799_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
WP_003401994.1\|5449795_5450923_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.7e-113	60.2
WP_011269112.1\|5450926_5452339_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	2.2e-107	45.3
WP_011269113.1\|5452335_5454495_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	2.9e-71	40.2
WP_103360398.1\|5454494_5454701_-	hypothetical protein	NA	NA	NA	NA
WP_003316280.1\|5454625_5454922_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	76.0
WP_011269114.1\|5454918_5455266_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	5.0e-42	70.4
WP_011269115.1\|5455326_5456823_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	1.4e-234	80.3
WP_003401999.1\|5456841_5457030_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.8e-14	73.5
WP_011269116.1\|5457026_5457617_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.4e-52	52.6
WP_011269117.1\|5457662_5458001_-	lipoprotein	A0A059VJW1	Pseudomonas_phage	1.2e-19	59.2
WP_003411734.1\|5457981_5458371_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_011269118.1\|5458493_5459666_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_011269119.1\|5459677_5459863_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	1.3e-12	89.5
WP_011269120.1\|5460135_5460579_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	4.6e-24	45.8
WP_024639984.1\|5460768_5461380_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.0e-49	49.2
WP_003402012.1\|5461534_5461783_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003316268.1\|5461904_5462147_+	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-16	51.2
WP_011269122.1\|5462252_5464175_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_003402019.1\|5466493_5467975_-	anthranilate synthase component I	NA	NA	NA	NA
WP_003402021.1\|5468045_5468864_-	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003304938.1\|5468860_5469535_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_011269123.1\|5469721_5470543_-	ABC transporter permease	NA	NA	NA	NA
WP_011269124.1\|5470554_5471802_-	ABC transporter permease	NA	NA	NA	NA
WP_003394920.1\|5471879_5472914_-	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011269125.1\|5472996_5474121_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.3e-27	31.4
WP_104683533.1\|5474546_5475922_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-76	52.8
WP_003341145.1\|5476099_5476729_-	response regulator transcription factor	NA	NA	NA	NA
WP_011269126.1\|5476725_5478738_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011269127.1\|5478852_5479857_+	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_011269128.1\|5479878_5480646_-	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_024639775.1\|5480646_5481318_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_011269130.1\|5481417_5482440_-	phosphotransferase	NA	NA	NA	NA
WP_011269131.1\|5482569_5485350_+	LPS-assembly protein LptD	NA	NA	NA	NA
WP_024639777.1\|5485330_5486653_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_011269132.1\|5486649_5487639_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_011269133.1\|5487635_5488442_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_024639778.1\|5488558_5488939_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_011269135.1\|5488938_5489814_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A291L9W7	Bordetella_phage	1.3e-06	43.8
WP_011269136.1\|5489837_5490158_+	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003316247.1\|5490445_5492368_+	PrkA family serine protein kinase	NA	NA	NA	NA
WP_011269137.1\|5492488_5493760_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.9e-10	40.4
WP_003402050.1\|5493756_5495319_+	SpoVR family protein	NA	NA	NA	NA
WP_011269138.1\|5495416_5496643_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	7.9e-82	47.1
WP_011269139.1\|5496741_5497266_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003316242.1\|5497256_5497610_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_164920521.1\|5497684_5498254_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003394970.1\|5498277_5499303_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-104	56.1
WP_002551877.1\|5499501_5499717_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_011269141.1\|5500195_5502151_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.8e-72	38.0
WP_003411788.1\|5502218_5504069_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.0e-36	34.7
WP_011269142.1\|5504337_5506824_+	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	8.4e-14	36.2
WP_003304103.1\|5508663_5509014_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002556076.1\|5509026_5509275_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_103714631.1\|5509612_5510575_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	5.7e-11	24.8
WP_162884967.1\|5510600_5510915_-	hypothetical protein	A0A2H4J9H6	uncultured_Caudovirales_phage	5.6e-16	50.5
WP_011269146.1\|5510987_5511227_-	hypothetical protein	NA	NA	NA	NA
WP_162886078.1\|5511306_5511753_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_164920574.1\|5513325_5515167_+	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_011269149.1\|5515171_5515447_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
5526515:5526530	attR	NA	NA	NA	NA

DBSCAN-SWA_5

5546800 : 5604222

Bacteriophage(27.27%)

holin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104683533.1\|5546800_5548175_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-76	52.8
WP_011269169.1\|5548766_5550572_-	acyl-CoA dehydrogenase C-terminal domain-containing protein	NA	NA	NA	NA
WP_003419817.1\|5550905_5551202_-	hypothetical protein	NA	NA	NA	NA
WP_011269170.1\|5551355_5552036_-	dethiobiotin synthase	NA	NA	NA	NA
WP_011269171.1\|5552060_5552870_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_003402140.1\|5552862_5553594_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011269172.1\|5553586_5554777_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_003372416.1\|5554841_5555900_-	biotin synthase BioB	NA	NA	NA	NA
WP_003402142.1\|5555990_5556725_+	ComF family protein	NA	NA	NA	NA
WP_011269173.1\|5556863_5557628_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_164920575.1\|5557709_5559626_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_003402149.1\|5559894_5560728_-	phosphodiesterase	NA	NA	NA	NA
WP_011269175.1\|5560753_5561785_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-27	35.0
WP_003316181.1\|5561781_5562576_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_003402154.1\|5562572_5563442_-	ABC transporter permease	NA	NA	NA	NA
WP_003402156.1\|5563441_5564443_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_011269176.1\|5564426_5565446_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_011269177.1\|5565638_5566613_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_011269178.1\|5567143_5568031_+	EamA family transporter RarD	NA	NA	NA	NA
WP_011269179.1\|5568228_5568771_-	glycine cleavage system protein R	NA	NA	NA	NA
WP_011269180.1\|5569093_5571271_+	malate synthase G	NA	NA	NA	NA
WP_003402175.1\|5571337_5571784_-	response regulator	A0A220YL79	Alteromonas_virus	2.2e-05	29.6
WP_011269181.1\|5572015_5573950_+	CBS domain-containing protein	NA	NA	NA	NA
WP_011269182.1\|5573946_5574660_+	3'-5' exonuclease	A0A1P8DIX6	Virus_Rctr197k	3.5e-05	28.2
WP_003316170.1\|5574685_5574988_-	cell division protein ZapA	NA	NA	NA	NA
WP_003402183.1\|5574984_5575218_-	hypothetical protein	NA	NA	NA	NA
WP_011269183.1\|5575629_5577255_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.6e-68	44.6
WP_011269184.1\|5577664_5578123_-\|transposase	transposase	NA	NA	NA	NA
WP_003402189.1\|5578249_5579353_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011269185.1\|5580136_5581084_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_170846044.1\|5581148_5581997_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011269186.1\|5581993_5583172_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.4
WP_011269187.1\|5583430_5584684_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.2e-101	53.7
WP_011269188.1\|5584701_5585952_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_003316160.1\|5585967_5586264_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_011269189.1\|5586260_5589281_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_011269190.1\|5589331_5589964_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_003402204.1\|5590241_5591099_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_003316157.1\|5591207_5592407_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_011269191.1\|5592438_5593485_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	1.1e-26	41.1
WP_011269192.1\|5593804_5594821_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	8.4e-29	41.8
WP_011269193.1\|5594941_5600755_-	hypothetical protein	NA	NA	NA	NA
WP_003402209.1\|5600979_5601543_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_011269194.1\|5601522_5602581_-	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	2.5e-28	38.3
WP_003402215.1\|5602631_5603525_-	acyltransferase	NA	NA	NA	NA
WP_003402218.1\|5603718_5604222_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_6

5835065 : 5881464

Paramecium_bursaria_Chlorella_virus(20.0%)

plate,integrase,protease

attL 5826229:5826245|attR 5855725:5855741

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5826229:5826245	attL	NA	NA	NA	NA
WP_103713679.1\|5835065_5835296_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	1.8e-11	48.6
WP_011269309.1\|5835685_5836432_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.4e-09	27.8
WP_024652767.1\|5836565_5837453_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005746663.1\|5838179_5839265_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	2.6e-68	39.9
WP_011269311.1\|5839409_5840147_+	hypothetical protein	NA	NA	NA	NA
WP_011269312.1\|5840158_5840632_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_162886000.1\|5841366_5841936_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004407013.1\|5842096_5842591_+	hypothetical protein	NA	NA	NA	NA
WP_011269316.1\|5842862_5844137_-	OprD family porin	NA	NA	NA	NA
WP_011269317.1\|5844359_5844566_-	hypothetical protein	NA	NA	NA	NA
WP_011269318.1\|5844784_5845891_-	agmatine deiminase	A7IVE6	Paramecium_bursaria_Chlorella_virus	9.3e-106	50.6
WP_003372277.1\|5845896_5846775_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	2.7e-76	48.5
WP_011269319.1\|5847116_5850029_-	aminotransferase	A0A1V0SKB7	Klosneuvirus	3.0e-18	23.8
WP_011269320.1\|5850271_5851354_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.3e-98	53.9
WP_011269321.1\|5851434_5851980_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.8e-52	57.5
WP_032607501.1\|5852150_5853959_+	sensor histidine kinase	NA	NA	NA	NA
WP_004406997.1\|5853955_5855347_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011269323.1\|5855333_5855807_+	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
5855725:5855741	attR	NA	NA	NA	NA
WP_011269324.1\|5856354_5857197_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_003372295.1\|5857193_5857760_-	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_003343604.1\|5857857_5858520_+	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_004406991.1\|5858564_5859005_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_003401941.1\|5859154_5860036_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003401939.1\|5860139_5860976_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003401937.1\|5860972_5863309_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_003401931.1\|5863518_5863959_+	hypothetical protein	NA	NA	NA	NA
WP_164920524.1\|5864092_5866027_-	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	4.9e-54	40.2
WP_011269326.1\|5866173_5866995_+	hypothetical protein	NA	NA	NA	NA
WP_011269327.1\|5867625_5869797_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_003401916.1\|5870497_5871247_+	hypothetical protein	NA	NA	NA	NA
WP_003318241.1\|5871316_5871850_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003343625.1\|5871864_5873367_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003318239.1\|5873394_5873877_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003343627.1\|5873876_5875709_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011269329.1\|5875672_5876743_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011269330.1\|5876739_5879343_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	2.2e-89	30.6
WP_011269331.1\|5879368_5880124_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_003343637.1\|5880120_5881464_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007005

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection