CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_004129	Pseudomonas protegens Pf-5, complete sequence	7 crisprs	DinG,csa3,cas3,PD-DExK,WYL,DEDDh	0	0	6	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_004129_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004129_1

1649529-1649733

Orphan

Consensus_repeat	Method
GGTGGCCTGGTGGGCTACAACCAGAACAGCG	PILER-CR

2 spacers

The CRISPR arrays of NC_004129_1

>merge|NC_004129|1|1649529-1649733|PILER-CR
GGTGGCCTGGTGGGTTACAACCAGGGTGGCAGGATCGAACGCGCCAGCTCCTCGGTCGGCGTCTGGGGGTACACCGCCAGCCGTATCGGCGGCCTGGTGGGCTTCAACAACAACGGCGCTATCGTCGACTCCAGCGCCAGTGGCGCGGTGGTCGGTGCGGGCTCCGTGGCTGCCGGTGGCCTGGTGGGCTGGAACCAGAACAGCG

>NC_004129|1|1|1649529-1649733|PILER-CR
GGTGGCCTGGTGGGTTACAACCAGGGTGGCA	GGATCGAACGCGCCAGCTCCTCGGTCGGCGTCTGGGGGTACACCGCCAGCCGTATCGGCGGCC
TGGTGGGCTTCAACAACAACGGCGCTATCGT	CGACTCCAGCGCCAGTGGCGCGGTGGTCGGTGCGGGCTCCGTGGCTGCCGGTGGCC
TGGTGGGCTGGAACCAGAACAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004129.6\|WP_011059799.1\|1639264_1639978_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NC_004129.6\|WP_011059797.1\|1637357_1638473_+\|outer-membrane-protein-assembly-factor-BamC	unknown	unknown	gnl\|CDD\|225854
NC_004129.6\|WP_011059803.1\|1644829_1645588_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NC_004129.6\|WP_015634531.1\|1655229_1656018_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_004129.6\|WP_019093296.1\|1650765_1651788_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_004129.6\|WP_011059814.1\|1661369_1662503_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|132247
NC_004129.6\|WP_026022881.1\|1642139_1644830_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NC_004129.6\|WP_011059801.1\|1641328_1642072_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|225663
NC_004129.6\|WP_011059810.1\|1656948_1658652_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|236235
NC_004129.6\|WP_019093300.1\|1656176_1656626_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NC_004129.6\|WP_011059798.1\|1638477_1639236_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293819
NC_004129.6\|WP_011059812.1\|1660087_1661056_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|224981
NC_004129.6\|WP_011059807.1\|1651931_1654820_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NC_004129.6\|WP_011059796.1\|1636461_1637340_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NC_004129.6\|WP_011059804.1\|1645562_1647314_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_004129.6\|WP_011059815.1\|1662513_1663701_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|132248
NC_004129.6\|WP_011059813.1\|1661112_1661364_-\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011059795.1\|1635574_1636135_-\|glycine-cleavage-system-protein-R	unknown	unknown	gnl\|CDD\|225337
NC_004129.6\|WP_011059800.1\|1640734_1641301_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_004129.6\|WP_011059811.1\|1658700_1660056_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877

Protein	Function_ID	Function_description	E-value
NC_004129.6\|WP_011059799.1\|1639264_1639978_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	5.27066e-146
NC_004129.6\|WP_011059797.1\|1637357_1638473_+\|outer-membrane-protein-assembly-factor-BamC	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	4.03424e-72
NC_004129.6\|WP_011059803.1\|1644829_1645588_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	9.76849e-72
NC_004129.6\|WP_015634531.1\|1655229_1656018_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.59043e-51
NC_004129.6\|WP_019093296.1\|1650765_1651788_+\|fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.15919e-09
NC_004129.6\|WP_026022881.1\|1642139_1644830_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_004129.6\|WP_011059801.1\|1641328_1642072_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	5.92089e-73
NC_004129.6\|WP_011059810.1\|1656948_1658652_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|236235	PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.	0
NC_004129.6\|WP_019093300.1\|1656176_1656626_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	7.83827e-25
NC_004129.6\|WP_011059798.1\|1638477_1639236_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.93023e-59
NC_004129.6\|WP_011059812.1\|1660087_1661056_+\|nitronate-monooxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	5.41267e-92
NC_004129.6\|WP_011059807.1\|1651931_1654820_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	2.14064e-22
NC_004129.6\|WP_011059796.1\|1636461_1637340_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	0
NC_004129.6\|WP_011059804.1\|1645562_1647314_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	2.55588e-119
NC_004129.6\|WP_011059815.1\|1662513_1663701_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|132248	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	6.55296e-153
NC_004129.6\|WP_011059814.1\|1661369_1662503_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|132247	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	8.59026e-100
NC_004129.6\|WP_011059795.1\|1635574_1636135_-\|glycine-cleavage-system-protein-R	gnl\|CDD\|225337	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism].	1.36922e-64
NC_004129.6\|WP_011059800.1\|1640734_1641301_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	7.52745e-22
NC_004129.6\|WP_011059811.1\|1658700_1660056_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.64361e-92

>NC_004129.6|WP_011059804.1|1645562_1647314_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MEVRGYKTEVALGKSSNSLLAGGLERRWQRLSGGCLGLLLMLPAVAAAAVYVPNAGQAMRDIQATQPALPEQPAPELDLPAKPPSAPAQAPDTSGIRLQVNDFVIVGNQVFSNETLQALLADLKGQELDLNQLRAAAERLTTYYQNQGYMLARAFLPAQDIEDGVVRIEVMEGRYGRIQVNNQSRALNSVITGPLSSLHSDTAVRSEDLERSLLLLSDLPGVRVKGTLSAGEQRGTTDLLVNAQPGPWASGTLEADNFGGYYTGEYRLGGSLNLNNPLRLGDQFNLRLLGSDEDQRYYRAAYKLPLGPWSTSVGVAYSRMNYELSRDFEVLEAHGQASIGSVFITQPLIRSRTFDLSAQLQYEDKRLRDDIDLFEVSSQKHVELWSLSLNGNSQDSLLGGGQNFFYLTYGSGRLSIDDPMDQWRDHFTAGTNGGFQKLNLNAARLQYLSPRFQLYGQFNGQWSSTNLDSSEKFGIGGPFDVRAYPQGTSSGDQGWQASLELRFLLAPRWQLKAFVDHGAVQVNKSPWIHDENRRQLSGAGVGASWSGPSQQISVTSAWALDNNQEGSGPERTPRIWASATQYF
>NC_004129.6|WP_011059803.1|1644829_1645588_+|fimbria/pilus-periplasmic-chaperone
MGHQGGYRRLCSLRGCRWLLGLLALSSGWAQADLSIVGTRFIYPADKPAISIRVGNSGRAPILLQAWLDKGDAEVDPSALVVPFVLSPPISRLEPRQNAALVLRYSGEPLPGDRESVFWINFLEVPPLAAAKDDLLRLASRMRMKLLYRPQGLSGKADEAVRQLRWSLVAPGQAGAALLAGNPTPYYVSFAEVALGSGNRSITLQGITVEPFGSTRIALPDMQGITPDQAVVHYQVATDSGETLSGSARIQD
>NC_004129.6|WP_026022881.1|1642139_1644830_+|fimbrial-biogenesis-outer-membrane-usher-protein
MSRIPCHRHLRASCSGPSSGRRRVPATQSLCLAAVLMSNSMVLVADQDGIAPATAEAADTGSSQDVLFDSQMLFQGKGTPIDTSRFQQLGYVAPGTYLLDVLVSSQWRALQEIQFRASDDPQGSQPCYDRSLLQQLGIDLKKTDASLGTHSSHPLMGDGLFCGDLGSYIPGATTRVKIAEQKIELSVPQLFLQQNLSKTYVDPASWDYGVSAATLNYNTSLFSSQSNGRSQTDGYAGLNLGLNLGDWRLRHSGTATWSPEVGGHYQRGYIYAQTDLPAWHSQLLVGESVTEADLFDSVSFRGVRLASDPRMLPESQRYYAPQIRGTASTNAKVSVYQRGYMIYETSVAPGPFEISDLQAASFGGDLDVTVTEANGQTSRFTVPFATTVQTLRPGTSRYSLTAGKVANPGLGGSEQYVAQGTLHYGLDNQLTGYAGTALTGSYMSALIGSALNTSLGAFGLDLTQARTELPRGGSMQGQSVRLSYSKNLPNSGTNFSLLAYRYSTSGYLGLHDAISLQDHVNQGESVDSFARVRDRLDININQQLGDGAGQLYATGSSLQYWNRQGQTLNFAMGYSNQWRGNSYSFMAQRMRASSSGSRAGAGADNTFFSFSLSIPLGREGRRGTTINSYASHDKRSGAHYTSGISGVLDKDGDATYALSAAHDQRQGETSTNASLNYFLPEVSLSSSFSQGRDYRQQSLGASGGMVLHSGGLTFAQTLSETTGLVHAPDAKGARVGYADTRVDGSGYAVVSSLSPYQLNTVDIDPTGVADDVELLLSSRHVAPVAGAVVMLSYPTRRARAVLIDSQQPDGQQLPFAAVAVDAQDGAELGAVGQGSRLVLRTEQDQGTIRVEWGQEPDQQCLIDYQLPPRDTASATGYVVLQRPCRAMPAGSVEERP
>NC_004129.6|WP_011059801.1|1641328_1642072_+|fimbria/pilus-periplasmic-chaperone
MTPTARFVHSLVIGVMFLGILSGVAHAGIVLEGTRLVYPAEAREVTLKLSNTGSVALLAQSWIDEGDANKSPEEIKVPFLLAPAVSRVEAGGSAILRVSYSKEPLAKDRESLFWLNVLETPPRRKQDENVLQFAFRTRIKIFFRPDNLIGNAGMAGEKLKWELSRAGASQVPVIKVFNPTPYYVSFGRMEVAVSGRRIDLKPGMVAPFGYESFPWPASAPSQPTKASIEYEVIDDFGGRGLLKKSLL
>NC_004129.6|WP_011059800.1|1640734_1641301_+|type-1-fimbrial-protein
MKRKTLLSMATSGLMLAALIPSFAQATDGVVKFSGSISDTTCDINGKAPGEGNETNVELGTINPSVFSEIGKTSTLKPFVLQLSGASCTAGKSVSIEFDQLGNVDPASGNLKLIGSKPARGVQIQIYNDHGSTPAKIVLGQAEAAPQVATISTEKTATLKYQAAYVSTEASVGAGSGVSYIRYTLAYQ
>NC_004129.6|WP_011059799.1|1639264_1639978_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MEKREELYRGKAKSVYKTDDADRLILLFRNDTSAFDGKRIEQLDRKGMVNNKFNAFIMQKLEAAGVPTQFDKLLGDNECLVKKLDMIPVECVVRNYAAGSLVKRLGVEEGMKLNPYTFELFLKDDAKGDPFINESHVVAFGWGTAEQLARMKELSLKVNEVLSKLFDDAGLLLVDFKLEFGVFSDGSIVLGDEFSPDGCRLWDKDTKKKMDKDRFRQGLGDVIEAYEEVAQRLGVPL
>NC_004129.6|WP_011059798.1|1638477_1639236_+|MBL-fold-metallo-hydrolase
MRFAVLGSGSQGNGTLIVSADTCVLVDCGFSLRETERRLLRLGVDPAQLSAILVTHEHADHVHGVGLLSRRYNLPVYLSQGTLRGMRKPVEVAGFVRGGESLQIGALRIDVIAVAHDAQEPTQFVFSDGQRRFGLLTDLGSYCAGVLDGYRGLDALMIEANHCRDRLARGYYPYFLKQRVGGDLGHLNNHQAASLVAELGWQDLQHLVLAHLSSKNNLPQLARQCFVDTLGCDPDWLQLADQDSGLDWRHIA
>NC_004129.6|WP_011059797.1|1637357_1638473_+|outer-membrane-protein-assembly-factor-BamC
MKRMAGLSALALIISSTSGCGWIWGPEGYFRDRGSDYLQAQQTAPMQLPPDVQTAKRLDPLLPIPRNVADDNVKGEYEVPRPQPLSAIADASDYTLQKSGDSRWVMAQHPPAEVWPVAVQFFQDNGFRLDQQRPQTGEFTTGWQRSDELSAAVAKRLSSAGVAADSETRVRVRIEPGVQRNTSEVYVVSAERPAGSTADVEFTNRSVNTGLDAALVDDMLASMSRTSEKGGSVSLLAARDFDTPSRVSLSEDGSGNPVLNLGADLDRAWSSVGRALEQGEWRVEDINRSLGLYYINLAEKAEKKDDEPGFFGKLFGSKPAKEEIEARAERYQVRLSKVGENVQVTVEKNINTVAPADVARKVLGVIQDNLG
>NC_004129.6|WP_011059796.1|1636461_1637340_+|4-hydroxy-tetrahydrodipicolinate-synthase
MIAGSMVALVTPMDAQGNLDWDSLSKLVDFHLQEGTNAIVAVGTTGESATLDVNEHIEVIRRVVTQVAGRIPVIAGTGANSTREAIELTTNAKIAGADACLLVTPYYNKPTQEGLYQHFRAIAEAVDIPQILYNVPGRTACDMQAETVIRLSSVKNIIGIKEATGDLQRAKAILAGVPGDFLVYSGDDATAVELILLGGKGNISVTANVAPRAMSQMCAAAMAGDAAKAREIHETLMPLNKTLFIESNPIPVKWALHEMGLMPDGIRLPLTWLSAACHEPLRQAMRQSGVLV
>NC_004129.6|WP_011059795.1|1635574_1636135_-|glycine-cleavage-system-protein-R
MSTPTVREQFLVISALGANPMELTNVLCRASHENRCAVVTSRLTRHGECSALVLEISGSWDALARLESSLPFLAKKHAFTVNVVRSAALESRPQALPYVAYVSAAYRSDIVNELCQFFIDHQVELENLTCDTYQAPQTGGTMLNATFTVTLPAGTQISWLRDQFLDFADAMNLDALIEPWRPQNPM
>NC_004129.6|WP_019093296.1|1650765_1651788_+|fimbrial-protein
MNGYARDCNLSSKAGSPWRLVNPLNTNTPVGTVLWERTVTLHTSFNLAISGKPRELVTAGHWSPGTPQTDDAAPTDVAGIGLRLDVVPQGRERIRVTQVTSPIVLEKNDDLIYESGLPAQTMVTQIIQSLILTVPPDQLPTGTLKVTQVTGSSYLQLYAYDLEKNESTLGSQLGKLSPPLTYSCRKSLVMGGLDFNMDIELPKTCVVEAYKEIGVRLGRFSLADFPQVNATSPEVPFSIGLSRCSMQARPRISFIDKSGGSAVKGVLGLIDSTTRGFGIVMTNGLTSERIEYSGQSYEMQRIGDGASIPLRASYIRIGNDQEVHAGGAANGAAEFTFTFP
>NC_004129.6|WP_011059807.1|1651931_1654820_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MNKIYALVWNQAQGCWNVTHEGARRRRAGSGKGLVVAVASLLALTGLPSAFALPTGGEVVSGSADFHTQGQHMSINQQTDKLVTQWKDFNVQNGQSVTFNQPTSTSIALNRVVGVNGSQIHGQINANGRVFLINPNGVVFGQGAQVNVGGLVASTRDISDADFKAGNYKFAGTSAAEVVNQGSITAADGGGVALLGARVTNQGTIKAQNGRVALAAGDGFTVSFDDNQLLDLHVDSAALNALVHNTGTGLLKADGGQVLMTAKSASSMLQTVVNNQGTVEANTLSQKAGRITLDGGDVGVVSVDGSLRASALDGKGDGGVIETRGANTRVQLTTKVDTQARDGQTGTWKIASNEVKVGSFLTAKSNTAHADTLSRNLATTHIELASGKGDVAVENGLFWFSGNQLTLSSAKDIRLDDSLFAGGANARVELNAQGDIKLNRQLTLSGSNSSLGLNHGGNFALGQNGGVTLSGNGARFDANGEAYSVIQNATQLQAIDQDLAGRYVLGNSIDSSARLTSIGGQQTFSGVFEGLGNTLSGLTVNSNGTDGGLFASSSGSIGNLKLASMTINGATSTTGSSAVGGLVGRNSGKIANVSASKLRVNAKGRQDNLVGGLVGSNAGGSIDTASVTGVVLGNTLTSAAGGLVGLNTGSVIQSSAGVDVRGTMNSHALVGIGGLVGINQSGSITDSSSSGEIGLGGSRDYAYRNLGGLVGINQDGTIVGSHASGMVFGGAGNNVGGLVGFNNSSRITDSSASGLVIGLVLNTSGGLVGLNQNSVLHNVKASGENYGQKSFNVGGLVGKNVDSEISGAEASGMLAAVDSTHVGGLIGHNTGGITQYAEAQGDVYGGSNSHVGGLVGYNAGDLRSVSASGSVRGECNSAVGGLVGTHAIGLIDTASAKGSVYGGVRSKVGGLVGENQSRVVNSITSSHVSGGSYAVLGGLAGVDGGEIRLSSSYGNIKSVAGN
>NC_004129.6|WP_015634531.1|1655229_1656018_-|IclR-family-transcriptional-regulator
MQDPNDSPEQAPKDRKFVEALARGLEVLRAFTHGHAVRGNQDIARITGLPKPTVSRLTYTLTQLGYLKYNQDLEKYQLDSAVLALGYAYSASLRVRQLGKPFMDEFSRRTNTTVSLTCRDRLSMIHVDSSRPPEVASLRMEPGLRLPLATSAAGRAYLAATPKIERDHLLGEVAKKLGDEWPALEKSLEDSFREYEEFGFCLSLGEWDRNVNGAGVPLRLADGSIMALTCGAPSFQLSSEKLESSLAHQLVMLARDLESLGV
>NC_004129.6|WP_019093300.1|1656176_1656626_-|PaaI-family-thioesterase
MSAVPEVSMLQGLFSGFAAHLGLNLREYQQAQTVIAVTVQPHHLNQAGNLHGGVIASLADTAMGMSGTWHADPAQWRLALTLSLNINYMAAIPPATEVRAVARLRGGGAKIFMASCDLLDAQDRLLASAEGVFKRGRLRAAATEVMACP
>NC_004129.6|WP_011059810.1|1656948_1658652_+|long-chain-fatty-acid--CoA-ligase
MSTARTQRPHHRVWPKRLPLALSVPATSLWFNLEVAARRYPDKVAYRFFGHTLSFAQLQAEALALAGWLQGEGVEPGDRVALYLQNCPQFIIACYAILRANAVLVPINPMNKVQELSYQLGDAQARVLICAADLAPIAQAANASLEPEQRLHRVLVTRYSDAMPASADMHPAEVASAEIDAWLRSEPALPEGYQRWNQALAQARCPGPHTAQADDLALLQYTSGTTGHPKGCMHTHRSLMSNAVSGSWTQSTVESVGLGVVPFFHITGLVCFVLRAVFDATSTVIMPRWDRELAGRLISRYRVTHWTCIPTMVIDLFASPHYQDFELSSLVHINGGGAAMPEAVAQRLRQEFGLTFLEGYGLTETAAASHGNPPERAKLQCLGMPFFGVDSRVVDPRTLEELAPGEVGEIITFGPMLFKGYWRNPEATEAAFVEFEGKRFLRTGDLGHMDEEGYFFLTDRLKRMINSSGFKVWPAEVEALLFKHPAVHEACVIATRDAYRGESVKALVVLRSEARGHTASEEIIAWAREHMAAYKVPRVLEFVDSLPKSGSGKVMWRVLQDREATHS
>NC_004129.6|WP_011059811.1|1658700_1660056_+|MFS-transporter
MTTTTITVQDPHASPEHARQLDTLYARIRWRLLPLLMLCYMVAFLDRVNIGYAQLQMKQTLPFGDAVYGLGAGIFFIGYFIFEVPSNLMLKRSGVRKTLLRIMFCWGLVAAAMMFVSTPMQFYVLRFLLGAFEAGFFPGVILYFTYWFPAPRRGQVIAIFMTAAAVAGLIAGPVSGSILKYLDGTVGLHGWQWMFMIQGLPASVLGVVAFFYLQDSPARARWLSPGEQRLLDADMARDLANARDKSQDSLAQMFRDPRIYLLSTAYFMFLGATYMLVFWMPSLIQGWGSKDLLQVGLITAIPNIVGIVGMVLIGQHSDKHRERRWHFVGCMAIAVFGLAVTTLLNGHLLLSVTALGFAYVGIKAGTPIFFALVSEYLSVAATAGGIAFISSLGNLGPAVTPWLNGVINSHTGGHVSSMYLGIVMYLLAGGLVLVTARIARVPKVAAVVAES
>NC_004129.6|WP_011059812.1|1660087_1661056_+|nitronate-monooxygenase
MSLPKIFTQHLRLPVVAAPLFIISTPELVIAQCKAGIVGSFPALNARPAERLGEWIEQITQALAEHDRLHPQRPAAPFAVNQIVHRSNDRLEQDMAVCVQHKVPIIITSLGARPEINQAVHSYGGIVLHDVINNRFARKAIDKGADGLIAVAAGAGGHAGTQSPFALVQEIRQWFDGPLLLSGAIASGRSILAAQALGADLAYIGSAFIATQEANAVTGYKQMISQSAAEDIVYTNLITGVHGNYLKASLVAAGLDPDDLPSSDPSQMNFGADRHKPKAWKEIWGCGQGIGVVDGVPSAGDLVARLGREYQQACQELRTRLL
>NC_004129.6|WP_011059813.1|1661112_1661364_-|hypothetical-protein
MNRGPGGHLGLSQGQQVSPPSLPGAQRAARRCAQSPLLNPSQAWRRISAAPGKGVAEVDNRYLEVMENLAYRGHALSLIHKIW
>NC_004129.6|WP_011059814.1|1661369_1662503_-|acyl-CoA-dehydrogenase-family-protein
MNFEHSAERRMLGDSLNRFIAQHYNLEKRQQSLQSGQGFNSGIWQQLAEMGVIGALFSEADGGYGGGGFDLALVFEAVGRGLLVEPLLGSAVLAGDAIASAGSETQKIELAQIIDGSLIAALAHDEPDSHYELNRVACRAEPQAGGWCLDGTKSLVLHGEQAGLLVVSARTAGAIDDSQGISLFLVPRDTPGLEIRSSATLDGGPVAQVRLNQLLVPGSALLGTLHQGHATLERAIGRGVLALCAEALGAMEVAKVATLDYLRTRQQFGRPIGSFQALQHRMAVLLLEIEQARSAVINAASALEADRLDRERALSAAKVSIGRIGTLVAQECIQLHGGIGMTWELPLAHYAKRLVMIDHQLGDEDHHLQRYIALGKQ
>NC_004129.6|WP_011059815.1|1662513_1663701_-|acyl-CoA-dehydrogenase-family-protein
MDLSFTPQEEAFRNQVQAFLAEHLPSELSDKVANGERLSKADMEHWHSTLNTRGWLANHWPEAFGGPGWSAVEKFIFELECGLANAPRIVPFGVNMLGPVLIKYGTPQQQDYWLPRILDGRHWWCQGYSEPGAGSDLAAVKTTAVRDGDHYVVNGQKTWTTLGQHANMIFCLVRTDREAKPQEGISFLLIDMASPGVEVRPIITLEGDHEINEVFFTDVRVPVANLVGEENKGWTCAKYLLTYERTNIAGVGLSMAALQRLKRVAAQRTRNGRPLLEDPQFAARLARVEIDLENMKTTNLRVIAAVAGGGAPGAESSMLKICGTEIRQELTALLRRAMGPAARVMQDAGDTGAMDLGPAFASSAAAQYFNNRKLSIFGGSNEIQKNIISKMILGL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_004129_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004129_2

2465132-2465265

Orphan

Consensus_repeat	Method
AGGCCCGCAAGACCGCCTTCGCCGGCAAGCCGGCTCCTACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004129_2

>merge|NC_004129|2|2465132-2465265|CRISPRCasFinder
AGGCCCGCAAGACCGCCTTCGCCGGCAAGCCGGCTCCTACAGGTCCACGCCACAGTCTCTACCAACCGTAGGCGCTGGCTTGCCAGCGAAAAGGCCCGCAAGATCGCCTTCGCCGGCAAGCCGGCTCCTACAGG

>NC_004129|2|1|2465132-2465265|CRISPRCasFinder
AGGCCCGCAAGACCGCCTTCGCCGGCAAGCCGGCTCCTACAGG	TCCACGCCACAGTCTCTACCAACCGTAGGCGCTGGCTTGCCAGCGAAA
AGGCCCGCAAGATCGCCTTCGCCGGCAAGCCGGCTCCTACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004129.6\|WP_011060500.1\|2458383_2459430_+\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NC_004129.6\|WP_011060505.1\|2466007_2466550_-\|PQQ-dependent-catabolism-associated-CXXCW-motif-protein	unknown	unknown	gnl\|CDD\|274823
NC_004129.6\|WP_011060508.1\|2468325_2469300_-\|YVTN-family-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|274824
NC_004129.6\|WP_011060495.1\|2453806_2455048_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NC_004129.6\|WP_011060499.1\|2457376_2458252_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_004129.6\|WP_011060512.1\|2472783_2473020_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227
NC_004129.6\|WP_011060509.1\|2469330_2470515_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274821
NC_004129.6\|WP_011060503.1\|2462446_2465098_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_004129.6\|WP_011060504.1\|2465287_2465953_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_004129.6\|WP_011060501.1\|2459638_2460823_+\|porin	unknown	unknown	gnl\|CDD\|379292
NC_004129.6\|WP_011060506.1\|2466782_2467574_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|163573
NC_004129.6\|WP_011060507.1\|2467570_2468329_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|274822
NC_004129.6\|WP_011060496.1\|2455094_2455805_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226634
NC_004129.6\|WP_138641099.1\|2452989_2453715_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_004129.6\|WP_011060513.1\|2474192_2474852_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_004129.6\|WP_011060510.1\|2470831_2472103_+\|HAMP-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_004129.6\|WP_011060498.1\|2456607_2457360_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270420
NC_004129.6\|WP_011060497.1\|2455801_2456521_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226670
NC_004129.6\|WP_011060502.1\|2461353_2462517_+\|FIST-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225825
NC_004129.6\|WP_011060511.1\|2472102_2472741_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NC_004129.6\|WP_011060500.1\|2458383_2459430_+\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	3.99272e-135
NC_004129.6\|WP_011060505.1\|2466007_2466550_-\|PQQ-dependent-catabolism-associated-CXXCW-motif-protein	gnl\|CDD\|274823	TIGR03865, PQQ_CXXCW, PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.	6.13407e-76
NC_004129.6\|WP_011060508.1\|2468325_2469300_-\|YVTN-family-beta-propeller-repeat-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	0
NC_004129.6\|WP_011060495.1\|2453806_2455048_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.68246e-49
NC_004129.6\|WP_011060499.1\|2457376_2458252_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.73006e-38
NC_004129.6\|WP_011060512.1\|2472783_2473020_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	7.70078e-13
NC_004129.6\|WP_011060509.1\|2469330_2470515_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|274821	TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NC_004129.6\|WP_011060503.1\|2462446_2465098_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.13369e-44
NC_004129.6\|WP_011060504.1\|2465287_2465953_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.10011e-61
NC_004129.6\|WP_011060501.1\|2459638_2460823_+\|porin	gnl\|CDD\|379292	pfam13609, Porin_4, Gram-negative porin.	1.04386e-15
NC_004129.6\|WP_011060506.1\|2466782_2467574_-\|ABC-transporter-permease	gnl\|CDD\|163573	TIGR03861, ABC_efflux_transporter_permease_protein, alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	8.72476e-138
NC_004129.6\|WP_011060507.1\|2467570_2468329_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|274822	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.03019e-126
NC_004129.6\|WP_011060496.1\|2455094_2455805_-\|ABC-transporter-permease	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	8.54714e-84
NC_004129.6\|WP_138641099.1\|2452989_2453715_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.4575e-153
NC_004129.6\|WP_011060513.1\|2474192_2474852_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	4.91629e-29
NC_004129.6\|WP_011060510.1\|2470831_2472103_+\|HAMP-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.99791e-41
NC_004129.6\|WP_011060498.1\|2456607_2457360_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270420	cd13702, PBP2_mlr5654_like, Substrate binding domain of ABC-type histidine/lysine/arginine/ornithine transporter-like; the type 2 periplasmic-binding protein fold. This group includes uncharacterized periplasmic substrate-binding protein similar to HisJ and LAO proteins which serve as initial receptors in the ABC transport of histidine-, arginine, and lysine-arginine-ornithine amino acids. This group belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.36044e-112
NC_004129.6\|WP_011060497.1\|2455801_2456521_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226670	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism].	1.72247e-79
NC_004129.6\|WP_011060502.1\|2461353_2462517_+\|FIST-C-terminal-domain-containing-protein	gnl\|CDD\|225825	COG3287, COG3287, Uncharacterized conserved protein [Function unknown].	2.54324e-117
NC_004129.6\|WP_011060511.1\|2472102_2472741_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.71782e-62

>NC_004129.6|WP_011060503.1|2462446_2465098_+|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator
MACTSTRPSPGSPLPVVELRPAAELQAQLDCLQRENRKLRRINSALIERVESGITRGNDPYAAFQHSVVLAEQVRERTDALNQAMAELKAGNHLLSEARLRAETAHQHLIDAIESISDAFVLFDQEQRIVLFNSRFRAFWSHSRVRIMAGMRLSEVRRLLTSTGLFSEEPRSGGDEQLLYRLHNGRWLQVSERPTREGGRVILFTDITEVKHSETLRREQAVAQKSHLLQRAVDNLSQGVAMVSAEGVLELWNRRFLELSGLAPVAAHRLFAEVIGDSELRLLSPDSRDANGRPIHECEQRLSDGRVLEIRTHPLPTGGFVNTFTDITERYQHAEALSESERWIRLITDHVPALIAYLNADLVYEFTNKVYEEWYCWPRGVMLGQSLREVHSEQHYQRLESYVERALAGESVTFEFAETNINNQERYMLRSYVPNRLANGEVVGIFVLIRDITERRRTAEALHQAYQNLELRVRERTAELTTLNQQLLREIEERSRVESRLREAKAEAERANLSKTKFLAAVSHDLLQPLNAARLFTSALLERRDPQASSALVRNVSNSLEDVENLLGTLVDISKLDAGVIKADIAPFALSELLENLAAEYAQVARSEGLELHFVACSALVRSDIQLLARILRNLLSNAIRYTRQGRVVLGCRRQGRWLSIQVWDSGMGIAAERLEEIFQEFKRGEEQRPDQDRGLGLGLAIVEKIAGILGHRIGVRSWPGRGSVFSVQVPISASAPLPAPRPELGDALLERLQGARIWVLDNDAAICAGMRTLLEGWGCQVITALSEEDLARQVDDYRAEADLLIADYHLDQQQNGIDAVARINARRALAIPAMMITANYSNELKQQLRELGHTLMHKPVRPMKLKTAISHLLSPATPTPHH
>NC_004129.6|WP_011060502.1|2461353_2462517_+|FIST-C-terminal-domain-containing-protein
MQQAQSEGVVSAMSQAVDPQQVAQDLASQLLHPHLGFVLFFCSAEYPLQTLGPALQQSFGGIPLVGCTSAGEITPLGYGRNCVTAIGFDHRHFSIAAELIDQMEHFSLIDAQQMVERLVGRCRSNTLAPIKGNSFALTLLDGLSSREEMVLAALSAALGDIPHFGGSAGDDNYLTHTHVYYGGEFHSGAAVVVLVNTWLDFEVFTTHHIQPREEKLVVTGADSTLRRVYELNAEPAAEEYARLIGVPLAQLDHRVFAAHPLAVRINQHYYVRAVQQVHPDLSLSFYCAVENGIVLTAMTPGPLLPNLQQLFDGLQQRLGGLLLTIGCDCFLRRLELEGQGSLEQIGAFLREQRVMGFNTYGEQFNGMHINQTFTGVAIARSRTPARR
>NC_004129.6|WP_011060501.1|2459638_2460823_+|porin
MHNNKNCQYPLIPALLVGLSTLGLGSVAEAEIMLYDKDQTTFSTDGYINAFYVNSKVDRAGDQYDRRQARVKMGFLPNYLGFNMGKQVDDLKLGARASFWVTINDSETNGTDTAIDVRQFYGTVANPEWGEVLIGKDFGLFARSNILLDEMLAGYGQVSDSLGLVDGGGVSFGNIGSGYPYPFPSSQITYRSPVMDGLRVAVGILDPVDTNDSSALGKAYQKNPRTESEVTYQFDLGGAKFYSWLNGSYQTSDNTDPNVQSVTSKGLGYGLQAKMGGLSLTGSGFQAKGINPFFTNNAGEATLRNVDSKGYLLQGSYKVGKNRLALSYGKTRDDGNGVVGSGADYQTRGVALFHDINDNLKLVAEYNQFEIDGHHTNAQNENTDTFAVGAVLTW
>NC_004129.6|WP_011060500.1|2458383_2459430_+|Ldh-family-oxidoreductase
MTEANQATLAQAPVEYLDLPALTDLLQRIFLRHGTSAEVARVLADNCARAERDGSHSHGVFRIPGYLSSLASGWVNGQAVPQVEDVAPGVVAVDAGGGFAQPALAAARELLLSKARSAGIAVLAIRNSHHFAALWPDVEPFAEEGLVALSLVNSMTCVVPHGAQRPLFGTNPIAFAAPREGAEPIVFDLATSAIAHGDVQIAKRQGQQLPPGMGVDRDGQPTCDPAAILDGGALLPFGGHKGSALSMMVELLAAALTGGNFSFEFDWSQHPGAQTPWTGQLLIVIDPNHLGGGRFAQRSGELVRQMQAVGLERMPGDRRYRTRAKSLEHGIPLAAAELARLRALAAEA
>NC_004129.6|WP_011060499.1|2457376_2458252_-|MurR/RpiR-family-transcriptional-regulator
MSQPIKQRLESSLSSATASGRAIASYMLANLYELPFQTAADIAEKLGVSESSVGRFCRAIGYSHFKDLKNDLKNDLGEGPWLVGDRLQEFRQQPNPAAQGLPRSFELEVGALVKVYEYSLTPAWQTVVQRLASRRRVYVAGFQTERGIAASMVHLLQYLRDGVHLVDGAAGHFADVLLSPAEDCALVVFEARRYSRHALTLCHKAREAGIPVTLVTDTFCDWAEQNADEVFRVPTEFNLFWESTAAMLSLVHLLVNEVCKHLGPEVEKRLEATAALHNEFVGYTSSARPKQ
>NC_004129.6|WP_011060498.1|2456607_2457360_-|transporter-substrate-binding-domain-containing-protein
MNNVLRFAGACALVIAASTAQAETLKIATEGAYPPFNYVDSNNQLHGFDVDIANALCKQMKVECQIVAQDWEGIIPALLAKKYDAVVASMIATDERKKKIAFSNHYYRTPLSVAVAKDSDITDAQTNFKGRTVGAQASSTQAIYAEDHYGPAGADVKFYPTLDEANSDLAAGRVDGVIADKFPLLAWAESTGKDCCKIIGDVNGTTADASIAVRKEDNALRERLNKALDEIVADGTYKQISSRYFAFDIY
>NC_004129.6|WP_011060497.1|2455801_2456521_-|ABC-transporter-permease-subunit
MFEQLSLLSFASGGWGSALLAGALVTIALALACVPIGLPLGLAVALAARSKNRWARAWATTFSTVFRGLPELLTLLIIYYGCQIAAQKILGALGYPGEVAINTFVAAMIAFSLVFAAFSSEIWLAAFKTLPKGQYEAARALSLSRRTTFNRVLLPQLTRIALPGLSNNWLSLLKDTSLVSTISLVDLMRQTNLAVSVTKEPMLFYSVACFGYLFFSALSGHLFSFLERRFNRAQRSLQP
>NC_004129.6|WP_011060496.1|2455094_2455805_-|ABC-transporter-permease
MNLDDLLNLFLNQELLERYGPRFIDGLLVTAKLVAISFSLGAVLGLLIALGRLSSNRFLRRFTGAYVYFFRGSPLLAQLFMLYYGLGSFKGFWQDVGLWWFFRDAWFCTLLAFTLNTAAYQAEILRGSLLAVAQGQREACKALSLSRWTAFRKVILPQSLLIAIGPLGNELILMIKASAIASLVTIYDLMGVTKLAFSRSFDFQIYLWAAVLYLLIVEVVRRSLKYLEGRLGRHLN
>NC_004129.6|WP_011060495.1|2453806_2455048_-|FAD-binding-oxidoreductase
MHCQTLVLGAGIVGVSSALHLQARGRQVVLLDRQPPGNGTSHGNAGLIERASVIPYAFPREVTKLVRYGLNQQSDVRYSLRHLPKAGPWLLQYWRHSSAKGLAAATRAMLPLIERCVSEHLALARPANMLQLIADGGWLEAFNDPQAFDFAQRAAADLRDYQLNYRVLDRTALLALEPGLHQDVVGGLHWLDPKTVSDPGGLTRGYAELFKQRGGQFVIGDALSLTQIEGGWQVHSELGPITAQEVVVALGPQASGIFEPLGYRIPLAIKRGYHMHYAALPGTRLQHPILDPVGGYVLAPMVGGIRLTTGIEFADCDDPINEIQLRRCEALARNFYPLGERLDAEPWLGRRPCLPDMCPVIGPAPRHPGLWFNFGHAHHGLTLGPVSGHLLAQMVTGETPFTDPTPYRAERFN
>NC_004129.6|WP_138641099.1|2452989_2453715_-|amino-acid-ABC-transporter-ATP-binding-protein
MIDIAGLNKFYGAFHVLHDIDLKVRQGERIVLCGPSGSGKSTLIRCINRLEIAEKGRILVDRTDLSQNTREAAQVRSQVGMVFQHFNLFPHMSVLDNCTLAPMTVRGLSRKKAEELARGFLAKVGIENQANKYPSQLSGGQQQRVAIARALCMEPKIMLFDEPTSALDPEMVCEVLDVMVKLADSGMTMLCVTHEMCFARQVAGRVLFLDGGRIVEDAPPEEFFGAPKSERAKAFLAQIMH
>NC_004129.6|WP_011060504.1|2465287_2465953_-|response-regulator-transcription-factor
MYKILIADDHPLFREAIHNVISDGFPGSEVMETADLDSALALTQEHDDLDLILLDLNMPGMHGLNGLITLRNEAPTIPVVIVSAEQDKQIVLQAITYGAVGFITKSSARSQMTEAIEQILNGNVYLPPDIIRTQKSQPGRRSSETPSFPPELLQALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFGAYLRR
>NC_004129.6|WP_011060505.1|2466007_2466550_-|PQQ-dependent-catabolism-associated-CXXCW-motif-protein
MPRALETLAALTLSLALGAAHAAAPLFSAEGYRTSLYRSPTPLQIDQGRIIDTPGLQELLKEQPAPLLIDVYRRQWLQGRFIDSEPHANLPGSHWLANTGDGELSPEWQAYFAGNLQRLSHADPQRALVFYCRADCWLSWNAVKRAAALGYKNIYWYRDGLDAWEAAGLPVEAARPQPFP
>NC_004129.6|WP_011060506.1|2466782_2467574_-|ABC-transporter-permease
MNAYWQCLRGIVLREWLRFVLQRTRFLSALVRPLLWLLVFAAGFRAALGIAIIEPYSTYIPYEVYIVPGLACMILLFNGMQGSLSMVYDREMGSMRVLLTSPLPRAFLLASKLLATSLISLLQVYAFLAVAWLYGVQPPAMGLLAALPALLLVALMLSALGLLLSNAIRQLENFAGVMNFVIFPLFFLSSALYPLWKMLEASPWLYWLCTLNPFTHAVELVRFALYQRLNLLALAVCLGLTLVFSLLAVLTFNPQHAALRKST
>NC_004129.6|WP_011060507.1|2467570_2468329_-|ATP-binding-cassette-domain-containing-protein
MNALEVSQLSFAYGPRQALDQVSLSLAPGRFAALLGPNGAGKSTLIALLTRLYDLQQGDIRVGGCSLRNAARAALRQLGVVFQQSTLDLDLSVEQNLHYHAALHGLSRRQGQARIDAELARQGLSERRRDSVRALNGGHRRRVEIARALLHEPRLLLLDEASAGLDPASRLALNRHIRQLCQERRLSVLWTTHLLDEVQADDQLLILHQGRLVASGVAGTISQEQGGDLGTAFARLTQNPQPHPAPIGEPLA
>NC_004129.6|WP_011060508.1|2468325_2469300_-|YVTN-family-beta-propeller-repeat-protein
MRRPLLCRSALCAGLLLAAGHAMAATAWVSNEKDNSLSLIDLQTLEVTQTLPVGQRPRGLLLSHDNKLLYICASDSDRVQVMDVATRKIIKELPSGKDPEQFALHPNNRWLYVSNEDDALVTVIDTETAKVLGQINVGVEPEGMAVSPDGKWAVNTSETTNMLHWIDTSTQTLADSTLVDQRPRFVEFNQDGSRLWASAEIGGTVTILDVATRQVLKTLNFKIKGVHPDKVQPVGIKLSADGKYAFVALGPANHVAVIDAKTYEILDYLLVGRRVWQLAFTPDQSQLLATNGVSGDVSVIDVNSLKVLKSVKVGRYPWGVVVTP
>NC_004129.6|WP_011060509.1|2469330_2470515_-|ABC-transporter-substrate-binding-protein
MHQPAPLIPTCLLALASVLLPLAASQAGEEPLQVRIGYLGYRPDPGPLLSNIIPEPADAGLQGAQLAIVDSNSTGRFLKQQFQLDSASVDSPGALLQAAKAQHDQGLRLFVVNAPAASLRELSAALPDSLLFNAGSPDDRLRSSQCLGNVLHSLPGRAMLADALVQFMVLRKWQRALLIVGQTEDDRAYADALRRATQRFGVNIVAEKPWTFDNDQRRSAQADMPLFTQTAEYDVVLVADERGDFGEYLPYQTWYPRPVAGTQGLTPTGWHKSVETFGAAQLQKRFEAQAGRWMNDRDFAAWMAVRSVASAVSKLRQADPRALQTLLLSDQLPLDGFKGRKLSYRPWNGELRQPIPLVQPRALVSTSPQDGFLHPFNEMDSLGYDRPEVTCRYP
>NC_004129.6|WP_011060510.1|2470831_2472103_+|HAMP-domain-containing-sensor-histidine-kinase
MSALWRINLWVTAFFAVVTLACAALLLHQAVADVERELQSAEAVVEYLSDSAERNPAGLQPHLTQSLRHVRVHWLAPDEAVRMPEQAGLDAWLGRQLFSERRHNARELDLGDGRRVLIAVDARDEIDEVWDSLQQLLSLCGLALLLSLLTIRWAVRRGMGLLDDLLRALQQVSGGQLAVRLREAGLPEARQLAGHFNRMTATLEQTRADNAQLTQALLAVQERERTYLAQTLHDDLGQYLAGIRAQACLLRMVSNQPTVVEQTAQALELNCERLQQGFRALVQDLYPVVLQHLPLAEAFGLLVSQWQDSQGIDCQLRVGADLPALPGASKTHLYRLLQEALTNVARHADASQVRVRLQRSARGLRLLVRDNGCGARQPQRPGVGLHSMAERARSLGGELHILSRPGAGWALALNMPLNMPMEA
>NC_004129.6|WP_011060511.1|2472102_2472741_+|response-regulator-transcription-factor
MNILLVDDHAVVRQGYASLLRAVLPAMQVREAASGEEALARVAEEVPQLVIMDFGLPGISGLETTRRLRQRLPQLRVLFFSMHDELPLVRQALEAGASGYLTKNSAPQVLIEAVHRVLAGHAYIEQPLATQLACTPAQNASDPRLQSMTQRELEIFVMLAKGTPARVIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVHLGIDMGVVRVAG
>NC_004129.6|WP_011060512.1|2472783_2473020_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MSTMNISLPDALKSFVDDQVSQRGYSTSSEYVRELIRKDQDRQHLRGLLLAGAQSAPGTAVQGDYFESLRARVHKARG
>NC_004129.6|WP_011060513.1|2474192_2474852_-|pentapeptide-repeat-containing-protein
MNYLPLALLLSLSPALAMNVDDDGNDVPLTINGCLIAESSQCPGANLRGANLANQDLRKMNLAGADLSGADLRHAQLDLANLEKARLQGANLTRASLQQSNLRLADFTDAKLMAIQGWGLFAQGAQFEKADLSAAYLQFARLSGAKLHQAKLRAADLEMAWLSKADLQGADLSDANLQEAKFGESNLERADLRGARQHYGNFQDANMEGCQGCPGTWDK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_004129_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004129_3

2541042-2541159

Orphan

Consensus_repeat	Method
CCCACCAACCGTAGGAGCTGGCTTGCCAGCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004129_3

>merge|NC_004129|3|2541042-2541159|CRISPRCasFinder
CCCACCAACCGTAGGAGCTGGCTTGCCAGCGAAGGGGCCCGCGAGATCGCCTTCGCCGGCAAGCCGGCTCCTACATGGGCAGCTCCCCACCGACCGTAGGAGCTGGCTTGCCAGCGAA

>NC_004129|3|2|2541042-2541159|CRISPRCasFinder
CCCACCAACCGTAGGAGCTGGCTTGCCAGCGAA	GGGGCCCGCGAGATCGCCTTCGCCGGCAAGCCGGCTCCTACATGGGCAGCTC
CCCACCGACCGTAGGAGCTGGCTTGCCAGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_004129.6\|WP_011060573.1\|2536096_2537125_-\|purine-nucleoside-permease	unknown	unknown	gnl\|CDD\|377669
NC_004129.6\|WP_011060581.1\|2544549_2545206_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_004129.6\|WP_041774167.1\|2549958_2550555_+\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011060574.1\|2537212_2538169_-\|nucleoside-specific-channel-forming-protein-Tsx	unknown	unknown	gnl\|CDD\|237911
NC_004129.6\|WP_011060586.1\|2549059_2549962_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_004129.6\|WP_011060569.1\|2532910_2533138_-\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011060576.1\|2538876_2539911_+\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NC_004129.6\|WP_170866359.1\|2547235_2547910_-\|histidine-phosphatase-family-protein	unknown	unknown	unknown
NC_004129.6\|WP_011060585.1\|2548137_2548842_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|183298
NC_004129.6\|WP_011060571.1\|2534365_2534539_+\|DUF1427-family-protein	unknown	unknown	gnl\|CDD\|369277
NC_004129.6\|WP_011060575.1\|2538467_2538833_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NC_004129.6\|WP_011060580.1\|2543718_2544489_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270248
NC_004129.6\|WP_011060577.1\|2539910_2541005_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NC_004129.6\|WP_011060583.1\|2545945_2547235_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NC_004129.6\|WP_011060582.1\|2545202_2545949_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_004129.6\|WP_011060579.1\|2542770_2543547_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_004129.6\|WP_011060570.1\|2533362_2534136_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NC_004129.6\|WP_015635060.1\|2532690_2532861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366903
NC_004129.6\|WP_011060578.1\|2541173_2542229_-\|permease	unknown	unknown	gnl\|CDD\|223773
NC_004129.6\|WP_011060572.1\|2534580_2535537_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223677

Protein	Function_ID	Function_description	E-value
NC_004129.6\|WP_011060573.1\|2536096_2537125_-\|purine-nucleoside-permease	gnl\|CDD\|377669	pfam06516, NUP, Purine nucleoside permease (NUP). This family consists of several purine nucleoside permease from both bacteria and fungi.	6.20363e-170
NC_004129.6\|WP_011060581.1\|2544549_2545206_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.17579e-76
NC_004129.6\|WP_011060586.1\|2549059_2549962_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	5.37803e-81
NC_004129.6\|WP_011060574.1\|2537212_2538169_-\|nucleoside-specific-channel-forming-protein-Tsx	gnl\|CDD\|237911	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional.	3.15761e-168
NC_004129.6\|WP_011060576.1\|2538876_2539911_+\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NC_004129.6\|WP_011060585.1\|2548137_2548842_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	1.06511e-64
NC_004129.6\|WP_011060571.1\|2534365_2534539_+\|DUF1427-family-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	5.25406e-22
NC_004129.6\|WP_011060575.1\|2538467_2538833_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	2.60113e-21
NC_004129.6\|WP_011060580.1\|2543718_2544489_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	4.4234e-59
NC_004129.6\|WP_011060577.1\|2539910_2541005_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	0
NC_004129.6\|WP_011060583.1\|2545945_2547235_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	5.99362e-64
NC_004129.6\|WP_011060582.1\|2545202_2545949_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.19828e-148
NC_004129.6\|WP_011060579.1\|2542770_2543547_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.64554e-81
NC_004129.6\|WP_011060570.1\|2533362_2534136_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.52396e-33
NC_004129.6\|WP_015635060.1\|2532690_2532861_+\|hypothetical-protein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	0.00296068
NC_004129.6\|WP_011060578.1\|2541173_2542229_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	1.01262e-48
NC_004129.6\|WP_011060572.1\|2534580_2535537_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|223677	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only].	1.95141e-61

>NC_004129.6|WP_011060577.1|2539910_2541005_+|tRNA-2-selenouridine(34)-synthase-MnmH
MPLDCTDYREIFLNDRPMMDTRAPIEFTKGAFPGVLNLPLMTDQERQRVGTCYKQQGQQAAIVLGHQLVSGAIKEQRIQAWADFARAHPDGLLYCFRGGLRSQIVQQWLREAGIDYPRVGGGYKAMRTFLLDTTEQALQQCDFVLLGGMTGTGKTQVLGQLDNALDLEGHANHRGSSFGRRATGQPSNIDFENRLAVDLLKKRERGVQSFVLEDENRMIGSCALPLPLYQSMQGLPMVWLEDSLANRVQRILDDYVVNLCAEFVAVHGEQGFALFAERLLESLNKIHKRLGGERHQRLFLLMEAALAEQARSGDVERHRAWIEGLLGEYYDPMYAFQRESKGARIEFSGEHGAVLDYLRQRSPR
>NC_004129.6|WP_011060576.1|2538876_2539911_+|selenide,-water-dikinase-SelD
MSEPIRLTQYSHGAGCGCKISPQVLEVILAGSGAQNLDPKLWVGNASRDDAAVYAIDEERGVVSTTDFFMPIVDDPFDFGRIAATNAISDIYAMGGDPLMAIAILGWPVNVLAPEIAREVIRGGRAVCDAAGIPLAGGHSIDAPEPIFGLAVTGLVEKRFMKRNDTATAGCLLYLTKPLGIGVLTTAEKKGKLRSADIGLARDWMCTLNKPGSRFGKLEGVTAMTDVTGFGLLGHLVEMADGSGLTAQIHYDRVPRLPGVEYYLDQGCVPGGTLRNYSSYAEKIGRIQELHKRVLCDPQTSGGLLVAVTPQGNAEFLALAAELGLELAPIGELVERQSHAVEVF
>NC_004129.6|WP_011060575.1|2538467_2538833_+|nuclear-transport-factor-2-family-protein
MELSDHLLMLERQLQQAEVRADRQALEALLADDFLEFGVSGGRWDKAQVLASLPQQVFIERRISEFAVQCLGAELAQVTYLCHNAAAPGRAASSAWRSSLWRCQEGRWQMLFHQGTPRPSA
>NC_004129.6|WP_011060574.1|2537212_2538169_-|nucleoside-specific-channel-forming-protein-Tsx
MLNPLRRHASCRTLAVSLWLAGVTGLPSAFAQPPAAPADDSAQGESLSADVQPAKQGAYLSDWYNQDLMLIGSKDISFGPRPADDIYLEYEYFGRKGPFELYGYIDLPKILDIGNSHDKGIWDHGSPLFMEHEPRISIDYLAGRSLAIGPFKEWYVAFDWIYDHGSRTANRANTLYSGLGTDIDTHSRVNLSANFYGRYQWENYGASNEYSWDGYRAQLKYIVPIDSFSNGASLTYIGFTNFDFGSDLHKDNPARTANATVATNVLLYSFTHLRFTLVGRYFHNGGNWEDGSVLNFGDGEFRTRSNGWGYYAGVGYQF
>NC_004129.6|WP_011060573.1|2536096_2537125_-|purine-nucleoside-permease
MRGIQKISWGLGLSALVASGAWASEAPIKPKVVLISMFAPEAQHWIERLELKREIRVPGLAAEYPVIRCNDREVCLLTTGMGQTNAAASTLALALSPKFDLRKSYFLIAGIAGISPQHGTIGTAAWAHYLVEFGTQWEIDSRDAPEGWPTGYLGINTKGPNEKPPLDYKTEVFELNPKLQAKAFALSRNVALSESKESVAWRLKYPKAPANQPPVVTRCDTLAGNTWFSGTRLSERAEVWTRLLTDNKGTYCTTQQEDNSTYEALLRASREGLLDIQRLAVVRAGSDFDRPAPEASEVDNLLKYADQGGFVPALENLYRAGNPLVQDILGNWSAWEKGVPET
>NC_004129.6|WP_011060572.1|2534580_2535537_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKALQFSATGDLAALHVVDLPTPVPGAGQVLVRIKAAGLNPSDVKNVLGRFPYTTLPRVPGRDFAGVVEQGPAQLLGQEVWGTGKELGFFADGSHAQYVVLSAQGVARKPRHLSFAQAASLGVPYTTAWDALERSGVARDTRLLVIGGGAVASAALALAKVRGARVLAAARRVEQVQALEAQGYPTLHLQQPETLAAQVAEVYAGGAEVIFDTTGFWLPASVPALATFGRIAIIAAPVDGHVQLPALALYRKGGSVVGINSLLYGVEACAAMLEQFGRYFDEGLLPLPEGLVESPLERGLERYAEVNQGRGEKIILIP
>NC_004129.6|WP_011060571.1|2534365_2534539_+|DUF1427-family-protein
MNYLISLAAGLLVGLLYGALQVRSPAPPAIALVGLLGMLGGEQLWPVGRQLLGSWLS
>NC_004129.6|WP_011060570.1|2533362_2534136_+|helix-turn-helix-transcriptional-regulator
MALAAPPDLSDPAIPVQPLARTYPRGLFIEPHEHDWGQLLYAMSGVMWVETPHEALVVPPQRAVWLPPGVSHGIRVVSDLQMRNIYLRPSLAATLDPSVQVLQVDNLLRELIVRLVELDPPQPEYYEALVGLALLELRRAHRSQLKIALPDASDRRLGSLCQAVMAAPSLAISFEQHADAAGASVRTLARLFKEQLGVGFAEWRRQVQLATAAAELIQGVPVSRIARELGYSPSSFSDMFRRELGVAPSQYASANQV
>NC_004129.6|WP_011060569.1|2532910_2533138_-|hypothetical-protein
MNNAKLFVIEYTLHGAPKSFIIRQEKMDNAEAWHWASCDAGVGRIGRFGRERVKKTSKPMAEKFGIENVTWRPSV
>NC_004129.6|WP_015635060.1|2532690_2532861_+|hypothetical-protein
MSTQTCACPACTCKLGAHAIVRHGKHYCCQACADHHAHGEPCASTEGCKCAKGAHG
>NC_004129.6|WP_011060578.1|2541173_2542229_-|permease
MSNLASTQPNRGWAFWCKPLLFLLVAAIGLYYVKWSPYYLKAFVAADSHSIGASILNDQQSSPWSAALAYSQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGFSSTLRGGLFALPGMMCSCCAAPVAAGLRRQKVSVGAALAFWIANPVLNPATLVFMGFVLGWGFSALRLVAGIVLVLGVSLVAQRIAGPEQLPEAAVDAVVEASTVNDQPFLSRWGKTLWQLFWSTIPIYVLAVLVLGAARVWLFPHIDGAMGDSLWWLVPLAIAGTLFVIPTAAEIPIVQTMMTLGLGTGPAVALLMTLPSISLPSLLMLRKDFDARVLVTVAVLTMLVGIVCGLIGAVLL
>NC_004129.6|WP_011060579.1|2542770_2543547_-|IclR-family-transcriptional-regulator
MSDNNNSLFNQSLEKGLAVLRAFNAAQRTMNLAEIATAADINKSSAQRMIHTLEQLGYVRKHPQTKRFQLTPRVMEIGYNYLAADTLVDVANPFLAELAQVTGETTNLTEPDGLDMVYVARFVAPKFIPIHMPIGSRIPMYCTGSGRAYLSALPAAEALQILQASDRKAHTRHTRTDLDEIQREIDATQRRGYALNPEELFLGDMAIAAPILDGKGLPVAAVHVVVPSSRWTLEEAERKLAPSVIECARAIRTSIRTL
>NC_004129.6|WP_011060580.1|2543718_2544489_+|amino-acid-ABC-transporter-substrate-binding-protein
MHTRTRVLAPAVFAFCCALGLGLSASAQAEPLYKVGATATGIPFTFLDVKSQSIEGMMIDAARAVGKAGGFAVDIQQTTFAALIPSLTSNKIDIISAAMLRTPVREKVVQYSDPVFSYGEGLIVKADDASDYRRMEDLAGETVGAQVGTVFIDELNKRGIFKEVRGYDSIPDLMRDLALGRIKAGFADRPILAYQLAQGTQNKVRLVKGYQPVVMGDVCLIVRKGDAQTLAEVNRGIAVIKADGTLDRIIEHWKLN
>NC_004129.6|WP_011060581.1|2544549_2545206_+|amino-acid-ABC-transporter-permease
MFLQNALDFLPILLKGAVVTLQVTVGSFVLSSLIGLVFALMMVSKVRSVALFAIGVVNVIRGLPIIVQLFYIYFVLPDFGIQLTAMQAGVIGLGIAYSAYQAENFRAGIQAIHQGQIEAAESIGMRGPMIMRRVVLPQALRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIASSTFENMTVYTLVALLYLALSLPLSFALRRLEARISTRRKP
>NC_004129.6|WP_011060582.1|2545202_2545949_+|amino-acid-ABC-transporter-ATP-binding-protein
MIQIKGVHKSFGNVAVLEGIDLQVHSGEVVCLIGPSGSGKSTLLRCINGLESYEQGDILVSGARVDRQAKSIHELRTRVAMVFQRFNLFPHRTALQNVTEGPIYVKKQDPRQARLRAEALLEKVGLAHRMHAYPDELSGGQQQRVAIARALAMDPEAILFDEPTSALDPELVGEVLAVMRKLADEGMTMIVVTHEMGFAQDVADQVCFLHSGRIVEAGPARTVLSTPSHPRTQDFLRRLLNQGAEVQA
>NC_004129.6|WP_011060583.1|2545945_2547235_+|FAD-binding-oxidoreductase
MSASEPLRMPPSLWAATAMPAEHTPALAEDREVDVAIVGAGYTGLVSALRLAQSGASVCVLDAGEPGWGASGRNGGQVIPGLKFDPEQLLAKFGPVQGEALVDAVGGAADEVFELIKEHGIRCDASRKGWIQPAFSGAAMHTLEQRAEQWRQRGVAVELLDKAAVSQRIGSPQYLGGWVDPRAGSLHPLNYARGLARVAMGLGVSIHGQSRVRKLQRDGGRWTLETDRGARVRASKVLLATNGYTDDLWPGLRQTVIAANSFIIATRPLPAELRQSILPGGEVCSDARRLLLYFKQDAQGRLLLGGRGPFSEPRRDADWNHLERSLLNLFPQLAGVPIEYRWSGRVALTPSFLPQLHEPAPGLSILLGYNGRGIALSTLLGRHLAARLTGAGQGFPFPVTPLRPIPLHGLQRLYLGAGIAWYRLLDALG
>NC_004129.6|WP_170866359.1|2547235_2547910_-|histidine-phosphatase-family-protein
MNLPRRLARHCKHRRYLPLPALLLGGALCLSLESSASRAQPVDGTQTLVFLRHAEKPAGGLGQLNCQGLNRAIDLASLLPEKFGKAQYVFAANPTRNVEEGELDNSYSYIRPLMTISPSAIKLGLPVNIDFAANDTSDLADELLHDRYHNSIIYTAWSHGYLPELINKVAEEAVGEQQPITEDWASSDFDSLYVLTLTWRNGKASLHSQSYKQGLDGGEQDCPS
>NC_004129.6|WP_011060585.1|2548137_2548842_+|glutathione-S-transferase-N-terminal-domain-containing-protein
MSDLSAFAVTQKWPAQFPEWIQLYSLPTPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILIYLADKSGQLLAQESAARYETIQWLMFQMGGIGPMFGQVGFFNKFAGREYEDKRPLERYVNEAKRLLGVLDKHLGGREWIMGERYTIADIATFPWIRNLIGFYEAGELVGIDNFPEVKRVLAKFVARPAVIRGLEIPKVS
>NC_004129.6|WP_011060586.1|2549059_2549962_+|PhzF-family-phenazine-biosynthesis-protein
MRPLSFKQVDVFSSTPLKGNPLAVVFNADELSTERMATFANWTNLSETTFLLQPRDPRADYRLRIFTTTQELPFAGHPTLGSCHAWLEAGGVPRGEEIIQECEVGLVRIRRQGDQLAFLAPPLLKAGPVEPQVLEQVHRGLRLTPGDIVQAQWVDNGAGWLAVMLGERQQVLDLQPDYPALIGLAVGVIAPCDPERDDSDAQFEVRAFIAGDGMPEDPATGSLNAGIAQWLLGAGLAPARYRVSQGLSMGRAGRIDVEQIGDEIWIGGTVRTCIEGHLRLLQTSEQACGNTPSPTGPRHP
>NC_004129.6|WP_041774167.1|2549958_2550555_+|hypothetical-protein
MSALAPGDFAGTGTHKPARLLCAWAQVVSWKGWMLRAGLLGLLALDPLLCIAQTTAVKQPPGPATLPGNTPGSESAASASVAATPGDNGVAVNATCNLPLKPSAGKVVEIYWTQGPENRRVVGREADHYVDLNLIVRTVGYRPGECIEATIQSENAADEIADRIKKIVLRGKVDDTGMAYFKTPLKDYTLNLQGSEPP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_004129_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004129_4

3654225-3654382

Orphan

Consensus_repeat	Method
CAGCCCAGGCGATGCATGTCTCACGGGCCTCTTCGCCGGCAAGCCGGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004129_4

>merge|NC_004129|4|3654225-3654382|CRISPRCasFinder
CAGCCCAGGCGATGCATGTCTCACGGGCCTCTTCGCCGGCAAGCCGGCTCCTACATAAGCAGGTACACCGCATCCCTGCGTAGGAGCTGGCTTTCCAGCGAAGGCGTCAGCCCAGGCGATGCATGCCTCACGGGCCTCTTCGCCGGCAAGCCGGCTCC

>NC_004129|4|3|3654225-3654382|CRISPRCasFinder
CAGCCCAGGCGATGCATGTCTCACGGGCCTCTTCGCCGGCAAGCCGGCTCC	TACATAAGCAGGTACACCGCATCCCTGCGTAGGAGCTGGCTTTCCAGCGAAGGCGT
CAGCCCAGGCGATGCATGCCTCACGGGCCTCTTCGCCGGCAAGCCGGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_004129.6\|WP_011061464.1\|3659858_3660626_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_004129.6\|WP_011061468.1\|3663155_3664355_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NC_004129.6\|WP_011061450.1\|3640167_3641739_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173868
NC_004129.6\|WP_011061466.1\|3661407_3662205_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_004129.6\|WP_011061455.1\|3645404_3646652_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274924
NC_004129.6\|WP_011061458.1\|3650846_3652004_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274652
NC_004129.6\|WP_011061457.1\|3648667_3650575_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_004129.6\|WP_011061459.1\|3652023_3653076_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_004129.6\|WP_011061471.1\|3666276_3666837_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NC_004129.6\|WP_011061456.1\|3646893_3648675_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_004129.6\|WP_011061469.1\|3664320_3665160_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NC_004129.6\|WP_011061452.1\|3643136_3643868_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|214970
NC_004129.6\|WP_011061460.1\|3653113_3654172_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_004129.6\|WP_011061463.1\|3657136_3659608_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_004129.6\|WP_011061467.1\|3662391_3663156_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_004129.6\|WP_011061451.1\|3641749_3642949_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274652
NC_004129.6\|WP_011061470.1\|3665156_3666227_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NC_004129.6\|WP_011061462.1\|3654675_3656946_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_004129.6\|WP_011061453.1\|3643883_3644939_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_004129.6\|WP_011061465.1\|3660636_3661398_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673

Protein	Function_ID	Function_description	E-value
NC_004129.6\|WP_011061464.1\|3659858_3660626_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.21885e-64
NC_004129.6\|WP_011061468.1\|3663155_3664355_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.61487e-83
NC_004129.6\|WP_011061450.1\|3640167_3641739_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173868	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.55225e-168
NC_004129.6\|WP_011061466.1\|3661407_3662205_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.74676e-120
NC_004129.6\|WP_011061455.1\|3645404_3646652_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	7.88121e-132
NC_004129.6\|WP_011061458.1\|3650846_3652004_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	6.56332e-105
NC_004129.6\|WP_011061457.1\|3648667_3650575_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.5382e-153
NC_004129.6\|WP_011061459.1\|3652023_3653076_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	3.12564e-24
NC_004129.6\|WP_011061471.1\|3666276_3666837_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	9.21875e-20
NC_004129.6\|WP_011061456.1\|3646893_3648675_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.59855e-123
NC_004129.6\|WP_011061469.1\|3664320_3665160_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.84488e-105
NC_004129.6\|WP_011061452.1\|3643136_3643868_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|214970	smart01007, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	1.20361e-11
NC_004129.6\|WP_011061460.1\|3653113_3654172_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	2.20564e-28
NC_004129.6\|WP_011061463.1\|3657136_3659608_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.78662e-67
NC_004129.6\|WP_011061467.1\|3662391_3663156_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	3.81396e-61
NC_004129.6\|WP_011061451.1\|3641749_3642949_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	8.07108e-96
NC_004129.6\|WP_011061470.1\|3665156_3666227_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	5.31439e-23
NC_004129.6\|WP_011061462.1\|3654675_3656946_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.26316e-50
NC_004129.6\|WP_011061453.1\|3643883_3644939_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.73101e-26
NC_004129.6\|WP_011061465.1\|3660636_3661398_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.63566e-59

>NC_004129.6|WP_011061460.1|3653113_3654172_+|ABC-transporter-substrate-binding-protein
MSKSLDTLWYTHSPVPTGLGIAVQSGRLAEAFLPFGTNIQSLRESSEREVREAHYDHHLQNSVRHGGNIPAIWAYSSGVQTRVLGLSWSDEVQLILTTAESGVKSIRDLKNRRFGLPKWANVQIDFTRAQALRGLENALRLEGLEVADVELVDYPYGGTYSDEQKQHLYGSEVSLGVTRFSRRNNELIGLLRGDIDAIFLKGAHAVHLANEFGLQVVVDTGSHPDPLIRSNNGTPRTLTVDTHLLREHFDASVKIVDTVLRTEQWAWANPEETRRFLARELNTSEYWVAAAYGEDAHRRLRTTLDARSIEALQDFTDFLHRWQFIPRRFDVREWIDFSVLETVIGSTSRVAV
>NC_004129.6|WP_011061459.1|3652023_3653076_+|ABC-transporter-substrate-binding-protein
MSHPLDTLWYTRCPVPTGLGIAVQKGWLQDSLGALGTQVQSLRESSDQAVRESHFDHSLRNSVRHGGSIPALWARAQGRETRLIGLSWADEVQLILTRADSGIHRIKELKGRRFGLPDWAGAQIDFTRAQALRGLENALGLDGLQVGDLQLVNYRYGGTFSDPQVQTLADTPVSAQPSSGRNLELQGLLRGEVDAIFLKGASAARHAHEFGLRTLIDTGAHPDPLIRCNNGTPRTLTVDSHLLEQHLDVATGILGAVLRAEDWARHHPEDTRRYLARETNSSEYWTSAAYGEDAHLRLRTGLEEQAIDALQDFSAFLRRWRFIPQQVDVRQWIDRRPLDALLATPTALAG
>NC_004129.6|WP_011061458.1|3650846_3652004_+|LLM-class-flavin-dependent-oxidoreductase
MSTEFFWRLPLGTDGPQLSTDKHNRGNLHPRAGHIAPGRLANGEPDGFTYIDYIAQVAKAAELAGFEGALLPTGPEPWVVAAALARETRRIRFLIAFQATWTLPAYAAQQAAILQNLSHGRLDWNIITGGNPVSQRANGDYLDHDRRYQRTGEFLDIIQGLWQNERFSYDGDIYQLENGALPPGLQQERKPGVYFSGFSDAALDVAARHADVYLNWAEPIDQLKPHIERVRELADKQGRTVRFGLRVDLFARETEEQAWADLRRQFDKLEGKGSLIAKNFTSGSDSVGAARQTAYHQNVDRFDDLILGPNLWAGFAKAKPGPTVGLVGSHQNVAERLAEYRDAGFSTFILAGNPHLEEALRIGQEVLPLVQQRPVAQATPLQARA
>NC_004129.6|WP_011061457.1|3648667_3650575_+|ABC-transporter-ATP-binding-protein
MANPIAGKALSDIEIEEMLARQALDRSMLSRLLPLLRPIRGPILTVIGIELLLVFTVFLRPWFVRELLDRGLVPDQGHWLLDESLVLWLGLGLAASWLGRFVLAGLSQFVAGSAAIRVLNDLRVKVFAHIQALSVSYFDQTRAGRIISRADRDVDSLEPLLIQGPPELLGALLRCGLAALMLWRIDPRFFLSLAATVPLLALATWGFKRISQRNWARVAENRSRFTAHLVESVSGARMLQQCGQQEPNLQRYRGLLDDFNQALIRGSLRSSWFAPFTALLSTAGMAALLLVGGYGLADNQISVGQMAESLFYVFLFLGPLQELSDLFERYATGSASAQRIFLLLDTRPQVLDPAQPQRMQRARGEVGFEQVRFAYDPRSKSAVIQNLDLQIKAGEVLAIVGPSGHGKSTLVQLLTRFYDVQGGAVTLDGVDIRHLAQHDLRRAVGVVLQDNVLFSGTILDNLRLAAPGADDATLIAAARELGADEVLERLPHQYHSEVGPLGGHLSHGQRQLVCLVRAYLANPAVLVLDEATSAVDIHTERRIQRALRRLCQGRTAIIIAHRLATIRDADRIAVIRHGQLVEQGPHQQLIRQNGAYAALYQAYLRSADQPGGANPAAPFAGKPAPTQAPPVSRQL
>NC_004129.6|WP_011061456.1|3646893_3648675_+|ABC-transporter-ATP-binding-protein
MIEKHPLLRALAIYREVPWRFTLVALLYVAVNLGLVWQQWLIGHAVNDVSSGQAVKHLADGSLDASLGWYWLWLLLAVALGRGLLQYAATVLSLVLSQELLTRLRERILQQVQGLHLGYHWQHGMGEMITRTTRDADKVRDALISFWRQVVETPLVVLATVGLLAWYSPWLAVVPLLLTACGLWIFVRQTEHLVSLDRAVGAAYDRVNQDLSEGIGGVRVIKSFALEHSRIQGFAAQVGLFAEHARRALAYSSSRIPLPQAVVALSHVWILVYGAHQVAAGQLGIGELVSALLIVTTLVFRIEGIGRVMQTFADARSSAERIWQLLDEPLHIRSGNARLPQAPLGLRLEGVSVSAPGGGRKILDDCTLSLEPGEVVALVGATGTGKSLLASLLPRLTESGAGRVLLGSELSGWQDVRDLDLQQLRRRVHVVPQESFLFSDTLAANLRLTAPDASHRQLRQGLALAAAEDVLERLPQGLDSRLGDRGVTLSGGQRQRLSLARALLGEPDILCLDDATSALDAISERQVLDNIRQLRRDQGRATTLLVISSKLSTILLADRVLLLQDGRIRASGRHAELLKTNAHYRDLLGVDHG
>NC_004129.6|WP_011061455.1|3645404_3646652_+|acyl-CoA-dehydrogenase-family-protein
MSSVQALPVTPVRVLGSEAEAIAVAREIATEIAAIAADSQANGQLPRRQAQLLSDSGLTAIGVPKAFGGLGASVATIVETVRLISVADGGVGQLLQIHNVMLRGIFNGYPDAVRDRVVSDVLAGKRLGNALAEIGGKNKFALKTRIERRADGKLILNGSKFYSTGSYLAEWISLTAASEEGGAGVLLNRNAPGLTLVDDWHAFGQQNSVSGTVLFDNIELDEDFVSPRKGPMKRTGLTFPQILHAAIDTGIAAGALGAAVDYLKQHARPWVESGVDHASEEPHIIKQIGEYAVALRAAESLLRDAARVFDEHEQDPDNKELQDQLILSVATARAHSDSASLKISSDIFSLLGASSSLSKWNLDRFWRNARVHTTHDPIRWRLHHVGNYYLNGVDPGEYTAILNAKEQQGATRPAP
>NC_004129.6|WP_011061453.1|3643883_3644939_-|ABC-transporter-substrate-binding-protein
MTLAATLPTSAAQPELEQIWFTRCPVPTASGIAYKLGWLSEEFAADGLPVATLQEARQLGHHHYDHQLPGLFREGGNVPALAARAAGSPSRLIGLTWIEEWQTLLVRPDSGISRPEHLKGKRLALPAWGENRPGSIARAMSLHGYKGALSLAGLGFDDVQLVEVALQDQERAATPQEGLQRLWSGLDYLVRGEVDAVYVKGAAAADAARRLGLVVGIDLDLVAEPRYRINNGTPRPITVHQSLLDNHFDLVVRFLAQTLRAADWAAHNRPALNAILEEETRAGSAGVNEAYRGDFHTTLAPDLSPQRLEFLDIQKNFLYRHGFLERDFAIADWVDPRPLHAAHELLAQRRA
>NC_004129.6|WP_011061452.1|3643136_3643868_-|class-II-aldolase/adducin-family-protein
MTVLINEQPITQELQAFIDQVLQEAEQAFTVFRETQTITANGTVGFIERVPGQELLVSVNYGGPWNYHKPLQATVTDFAGKVILGQGKGGLGRYTKLFQQHADITTVSHVHSPYLGAWAQTHRTLPFHYVPVQRYQLARELPVYIDRRQPEVDFILDSIAQNPFNLAILEANGGSTVWGKQGLRATAEFILLLEEGAQLQLLADALGGSRPYGPGVLTQQWKMSGLYERATELGLVPAIDRRS
>NC_004129.6|WP_011061451.1|3641749_3642949_-|LLM-class-flavin-dependent-oxidoreductase
MAVKILWYLTTPDGPYPWEPEGRWNTDFQHLKQLAVASDRLGYYGSLLGSSPNESLAVSAALIDATQRLRFLVAQHPGELSPAVLAKWALTFDQFSNGRLLFNVVNGSDAGLATLGVHYPHDERYDFSLEYWRAFQGFYAGDTDGYDGRYVKLAPRSPAAAGHPLGGWHAPRQRPGIPLWGAGTSGPGVAHSVQLLDVYLSFADTPPKLGEKFRKVAAEAAKIGRELSFGTRLQIIVRETEEEAWAHAEKLLQRTSLQTARASIERQLPPGETLDSFHSDDPQIQRNVEAIRAGRLPKARDLEIYPNVWLGPSLFGFNILGPAAGTYLVGSARQVAERIREYEEQGTSAFILSGFPLIDEAHRVADLLFPLLELDHGFEVPRLGATLAARQPAKATEQA
>NC_004129.6|WP_011061450.1|3640167_3641739_-|ABC-transporter-substrate-binding-protein
MSEAFSRRVFLGHSLAAGGGLLLGSSLLSGCDNGAAPGAAPLLPGTPVRGGRLRVGIIDGDQSGNLDAHKPVGGGIIRGWALYSKFWEWNPDVSTRLALAEFAEPNADASVWTIRIKPGLEFHHGKSIGADDMLFSILRLTDPQLASPFAGLVGAIDRQALRKLDQRTIEIRFKQGQSFFPLDETLISFGAIVPTDYHPQTNPVGAGPYRLKRFIPGQRSLYSRFENYYKPGQPYADELEIIEFKDQVSRAAALRAGQIDVASGVQAEHSALLKADPRLRFYASPSTSFTGFNLNLAKAPFQDVRVRQAFRLLADRQELVDRGLNGFGRVANDLYSPHDPTYNHGIAQRPHDLEQARALLRQAGQSDLRVELTTTPGPGVNAALVFAQQAKRAGVEVKVTQVDASVFNGPQREQWLLSPGATPARGFLASALHNDAPQAIYNRSNFHDPRFTQLYQQALAQPDLQLRRQWVHEAQAIQHQRGGLLIWGFNDVLDAASVRVGGLVPEQTTFASWRFDEMWLNHA
>NC_004129.6|WP_011061462.1|3654675_3656946_+|TonB-dependent-receptor
MHKLNPITKSLWLALALTGGTFSQDLLAAETTGTDTTGNSSEPALKTVTVTAQHREETLQEVPVAVSAVQGTSLVTDGVRNMGDITTFIPNASAKNPDGDGRPRWYIRGLGTGDTGAATVFPVGIYADDVYLNAPIAGGGPLFDLERIEILRGPQGTLYGKNTTAGAVNVISKKPTFDTDGYATLGIGSKSERILNGAIGGALVDDRLAARLSLYSEERDGFQKNLTDDHTYGDVDKKAVRLQFLARLNPDLDALLKIHAREYKGDGSNGSLPVGRYYNVGYQRPDGRNIALNVNEDAKLDHDGTSLTLNWHLGDYTLTSISAYDYIRGQSTSDADYTPYEVNGAAISDNRYNQYSQELRLASPQQETLRWLAGVHYFHEDLDSSAKRLITPGPTPNGTGSNQTGGATDFRDLNYQHTTDSYALFGNLTYDFTDNFTVTGGLRWTQEKKDIDLDLTQLTRATANGPLIPLGAAGSNGSRDESKTWEAWTYDLTPEYRINDNVRVFFRYAHGFRSGGFNTGLSTSLAQLTTVDPEKLDAYEIGLKSEWFNHRLTANANVFYYDYSDIQVNLLTVNNGVLTTALTNGAKGKVKGAELELEGQPTDYLHLRAAISFLDTEYTDFKNTNPNTGAVTGDYSGNSFVRSPRNVVSLGADYTIPLEIGGKLVAGGDVSFRDKEYFLADRQSSADKTLSQPHYTLANTRLTWFSPDEKLSVTGFVNNLTDRRYQVHGRPNGTLGQYVITYGDPRTVGLSVTSRF
>NC_004129.6|WP_011061463.1|3657136_3659608_+|TonB-dependent-receptor
MFHRNPLAGAVALVVGSLAVPAFAAQTSSNAPGASADHLDTVVVLGTRRSDVTALESAAPVDVLSAQQLQQTGASDLSGALTALSPSFSYPQSPQGAFAGSIAQGASLRGLASDQVLVLVNGKRRHTSANVTRQSLVNGRGAAAVDLSLIPLSAIERVEILRDGAAAQYGSDAIAGVINIVLKEKDDGGNLGYRFGGYDKGDGLQRKLSGWKGLSLPNDGFLTLSFDAGSQDPASDTNPDNRIFYPGSTSTSPPREQNNRYRTWRWGSGNVSDQYNFAANSEFGLSEGLTAYGFATYSHKNTDAEGFFDPPTTLRNNYGSDALQRYPDGRLPITRYSLEDYALTGGLRYEDERLGKFDLALNHGDNSLKSADRNAINPSWGEASPAKIYTGKREADQTNLTLDWVRDFPTDLLFKPLTLSAGLAWRQENYELSAGEAAGWQNGPLFNTVDPVTGRRIPGYYSGITQVDAASLERKVWGAYIDVEGQVTEKFQAGVAVRTEHYSDFGDTTNGKLSLRYDFTPQLAARATASTGYRAPSLVQSGLSSFSVQVVEQPPGSGNYVEVQQRTLRADSPEAKLLGGKALKPEESTNYSLGLVWRPLANASVTLDAYRINIDNRITLSDQLPASVVTPIFAGTPYANIQSAAFYTNVADTRTDGVELTGNYQLDLQQWGRLNLSSGYSQNNTRITALRDVGNIAGSQIVGRTTQGLIEDGTPKNKLTLSANWLYDSWGLTLAQRRYGQWKSLNASNPTLDQTFSAQWVTDLDISYSFDKSLKLSVGAINLFDTHPDKASGAQLYGVPKYSITSPEGAQGAFYYTSLSYDF
>NC_004129.6|WP_011061464.1|3659858_3660626_+|ABC-transporter-permease
MAHSLRCTLTSLTWLVSPLALLLLWTLVAQAGIFPRNLLVPPAQVLHTFETLLASGELLEHLHNSLSRLGLGFALGALGGLVFGVLMALSKTVEAYCAPLFHTLRQIPSIALIPMFVLLLGIDETFKIVIVAKTAFFPVALAASEGVKAIPRSYFEVADVYRLRWPTLVRQIALPAAAPPIITGLRIGLTRCWVVLVATELLAADSGLGQMIEMARQMLRIDVVMVGIVVTGVIGFVLDFSFRRLEQRVLRWQTR
>NC_004129.6|WP_011061465.1|3660636_3661398_+|ABC-transporter-permease
MTTLLAKFRGLLLPLLLIGGWEYLSRQDAAGAYAFVPLSTIASALLELLGNGELPVNLLASLGRASGGLLLGTLAGVMLGALMALSTLANRLIGPLFHSIRQVPMLGWIPLIAMWFGNGEFSKMLIVSLAAFYPMVLNTYQGLCQVERRYREVGQVLVLNPAQRLRHILLPAALPSIATGLLQALAFAWVTAVGSELFLSSGAGLGNLMMNAEAGSRMEVIVLCVLCIGLCGYLMTLLLTLLSRRLLRWRPTR
>NC_004129.6|WP_011061466.1|3661407_3662205_+|ABC-transporter-ATP-binding-protein
MNAIAQHAPLPTHLHARTGALQIRGLNKSYRIQGQALPVLQGIDLDVQPGEFVSIVGASGCGKSTLLRLIVGLEGDYQGQMLLDGKPVTGTSLERGIVFQDHRLFPWMTLAQNIALALKNHPLSEAEKQRRVAEHIALVNLQGFEQAYPHQLSGGMAQRGAIARALINQPKVLLLDEPLGALDALTRVRLQHELQRIWVQQRCTVIMVTHDIEEALYLGDRVIVMDAHPGRIKHEIRVDLPHPRDRSSPVLQGYKEQLLEELVGH
>NC_004129.6|WP_011061467.1|3662391_3663156_-|ABC-transporter-permease
MGKQPSSLSHWLLGLAGLSSLLLGWWLGVHLLGDGNGLAARFSPEATFASLLELLGRGELYEHVLVSLKRILVGLLLALLIGVPLGLLVGSYRHLEAATTPAFQFLRMISPLSWMPVVVMLMGVGDQPIYFLLAFAALWPILLNTAAGVRQLDPRWLQLSRSLSATRWETLRKVILPGVLGHVLTGVRLSIGILWIVLVPCEMLGVSAGLGYFILDTRDRLAYSELMAMVLLIGVLGFALDALARGLHRRWSHA
>NC_004129.6|WP_011061468.1|3663155_3664355_-|ABC-transporter-substrate-binding-protein
MCLDDFTHTRRDFLKLSALLTAGGALPLLNSLQARAAQEPDAPVRIGYLPITDATPLLVAHNNGLFEAEGIKAERPVLLRSWAQVIEAFISGQVNVIHLLSPMTVWARYGSRVPAKVVAWNHVGGSGLTVAPGITEVKQLAGQSVAIPFWYSIHNVVVQQLFRDNGLVPVSKAAGSALGANEVNLVVLPPSDMPPALASKRIAGYIVAEPFNALAEELKVGRVQRFTGDVWRNHACCVVFMHEHDLDNRPEWSQKVVNAIVKAQLWTRDHRAEAAQLLSKDGANRYTPHAPQVLNRVLAPAAADREAYLASGAIQHSHWDEQRIDFQPYPFPSYTEELVKRLKDTLIEGDKGFLAGLDPAHTAKDLVDDRFVRNAIASVGGLKAFGLADSFERSEEFGL
>NC_004129.6|WP_011061469.1|3664320_3665160_-|ABC-transporter-ATP-binding-protein
MSGLLNAQAISLGYPAAQGWHTVLEDFDLHLQAGEVVSILGPSGVGKSSLLRVLAGLQKPHAGQVSLLGEPLDGPHPRVAVAFQDPSLLPWLNLEHNVAFGLDFARQPHLSPRQRKERIDQAIAAVGLEHARQRYPAQLSGGMAQRTALARCLARQPQVLLLDEPFGALDEVTRADMQQLLLKVIGQHRTAALLITHDIDEALLLSDRVLLLGNSPARTLGQWHIELPAPRAERIEELGALRIEILKTLRRASRNPHTSPLPAPSEIDHVPGRLHSYPS
>NC_004129.6|WP_011061470.1|3665156_3666227_-|acyl-CoA/acyl-ACP-dehydrogenase
MLDAQLSEWLDAQAQALDQGQCDPQQVLARLAGAEVLRVGIDPAQGGSGGDLTDALEVMASVASHSLAAAFVCWGQRAFIEYLLHSPNAGLRQRLLPSLLSGELAGATGLSNAMKFLSGIEALQVRAREQEQGWSLNGRLHWVTNLRKSGFVVAAAIEREEGGAPFILAIPDALPGLQRSDDLQLMALQSSNTAALELNQVAVARDWLLHEDARVFLPAVRPAFLGLQCALAIGLARRALSEVEKHVEGARSILHEPLLEQRQHLEQTVGELKSGLLDGRFLSQPGALFRVRIALAEATANAVQLELQASGGKAYLSEFGSGFARRWRESAFVPIVTPSLVQLRAELQRQARNAAA
>NC_004129.6|WP_011061471.1|3666276_3666837_-|carboxymuconolactone-decarboxylase-family-protein
MSRVTLHTLHTAPEAARPFLENALKNSGFIPNLLGILANAPAALETYVTVSALNGKAELSLAEREVVQLVAATTHGCDFCVAGHTSVALNKAKLADPVVSALREQSTLPEARLEALAAFAREVIATRGKVSDAGYAQFKAAGYSEGNALEVILGISLATLCNFANVFAGSELNPELAKYRWSVQGQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_004129_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004129_5

4724962-4725213

Orphan

Consensus_repeat	Method
CGCTGGCAAGCCAGCTCCTACA	PILER-CR

3 spacers

The CRISPR arrays of NC_004129_5

>merge|NC_004129|5|4724962-4725213|PILER-CR
CGCTGGCAAGCCAGATCCTGCAACGCGATGAATTCCCCTCCCCTCCCACATCCCCTTCCGTAGGAGCCGGCTTGCCGACGAAGGCGCCCGCAAGTCATGCAGCGCCCCGGGTGACGTCTTCGCTGGCAAGCCAGCTCCTACAGCAGTCAGATGCACGGTGCAGATCCCCGTAGGAGCCGGCTTGCCGGCGAAGAGGCCCGCAAGTCATGCAGCGCCCCGGGTGACGCCTACGCTGGCAAGCCAGCTCCTACA

>NC_004129|5|2|4724962-4725213|PILER-CR
CGCTGGCAAGCCAGATCCTGCA	ACGCGATGAATTCCCCTCCCCTC
CCACATCCCCTTCCGTAGGAGC	CGGCTTGCCGACGAAGGCGCCCGCAAGTCATGCAGCGCCCCGGGTGACGTCTTCGCTGGCAAGCCAGCTC
CTACAGCAGTCAGATGCACGGT	GCAGATCCCCGTAGGAGCCGGCTTGCCGGCGAAGAGGCCCGCAAGTCATGCAGCGCCCCGGGTGACGCCTACGCTGGCAAGCCAGCTC
CTACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_004129.6\|WP_011062372.1\|4720674_4722327_+\|cyclic-peptide-export-ABC-transporter	unknown	unknown	gnl\|CDD\|130262
NC_004129.6\|WP_011062380.1\|4759750_4760338_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_004129.6\|WP_011062364.1\|4711830_4713222_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NC_004129.6\|WP_011062376.1\|4745121_4756269_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_004129.6\|WP_011062367.1\|4714088_4715717_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062377.1\|4756481_4757450_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NC_004129.6\|WP_041774386.1\|4722422_4724897_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
NC_004129.6\|WP_011062365.1\|4713322_4713622_+\|DUF3349-domain-containing-protein	unknown	unknown	gnl\|CDD\|371747
NC_004129.6\|WP_011062366.1\|4713640_4714078_+\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|378155
NC_004129.6\|WP_011062370.1\|4718662_4719556_+\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|335469
NC_004129.6\|WP_011062374.1\|4725295_4738528_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237054
NC_004129.6\|WP_011062369.1\|4717319_4718615_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NC_004129.6\|WP_011062381.1\|4760450_4761251_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187616
NC_004129.6\|WP_015636428.1\|4757631_4758372_-\|thioesterase	unknown	unknown	gnl\|CDD\|225749
NC_004129.6\|WP_011062383.1\|4763136_4763514_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319969
NC_004129.6\|WP_011062379.1\|4758442_4759615_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_004129.6\|WP_011062371.1\|4719610_4720474_-\|N(5)-hydroxyornithine-transformylase-PvdF	unknown	unknown	gnl\|CDD\|187714
NC_004129.6\|WP_011062382.1\|4761243_4763070_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NC_004129.6\|WP_011062375.1\|4738540_4745122_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_004129.6\|WP_011062368.1\|4715924_4717298_+\|pyoverdine-tailoring-dipeptidase-like-protein-PvdM	unknown	unknown	gnl\|CDD\|366534

Protein	Function_ID	Function_description	E-value
NC_004129.6\|WP_011062372.1\|4720674_4722327_+\|cyclic-peptide-export-ABC-transporter	gnl\|CDD\|130262	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other].	0
NC_004129.6\|WP_011062380.1\|4759750_4760338_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.08429e-12
NC_004129.6\|WP_011062364.1\|4711830_4713222_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.53031e-87
NC_004129.6\|WP_011062376.1\|4745121_4756269_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NC_004129.6\|WP_011062370.1\|4718662_4719556_+\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	9.06776e-67
NC_004129.6\|WP_011062377.1\|4756481_4757450_+\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.10257e-77
NC_004129.6\|WP_041774386.1\|4722422_4724897_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
NC_004129.6\|WP_011062365.1\|4713322_4713622_+\|DUF3349-domain-containing-protein	gnl\|CDD\|371747	pfam11829, DUF3349, Protein of unknown function (DUF3349). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length.	5.92952e-21
NC_004129.6\|WP_011062366.1\|4713640_4714078_+\|SMI1/KNR4-family-protein	gnl\|CDD\|378155	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1). Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.	3.7563e-12
NC_004129.6\|WP_011062374.1\|4725295_4738528_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237054	PRK12316, PRK12316, peptide synthase; Provisional.	0
NC_004129.6\|WP_011062369.1\|4717319_4718615_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	2.72166e-66
NC_004129.6\|WP_011062381.1\|4760450_4761251_+\|glucose-1-dehydrogenase	gnl\|CDD\|187616	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs. GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.71932e-128
NC_004129.6\|WP_015636428.1\|4757631_4758372_-\|thioesterase	gnl\|CDD\|225749	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	1.52465e-80
NC_004129.6\|WP_011062383.1\|4763136_4763514_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	gnl\|CDD\|319969	cd16362, TflA, Toxoflavin Lyase. Toxoflavin lyase (TflA) is metalloenzyme degrading toxoflavin at the presence of oxygen, Mn(II), and dithiothreitol. TflA is structurally homologous to proteins of the vicinal oxygen chelate superfamily. The structure of TflA contains fold that displays a rare rearrangement of the structural modules indicative of domain permutation. Moreover, unlike the 2-His-1-carboxylate facial triad commonly utilized by vicinal oxygen chelate dioxygenases and other dioxygen-activating non-heme Fe(II) enzymes, the metal center in TflA consists of a 1-His-2-carboxylate facial triad. Toxoflavin is an azapteridine that is toxic to various plants, fungi, animals, and bacteria.	1.44411e-11
NC_004129.6\|WP_011062379.1\|4758442_4759615_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.24281e-19
NC_004129.6\|WP_011062371.1\|4719610_4720474_-\|N(5)-hydroxyornithine-transformylase-PvdF	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	2.15819e-13
NC_004129.6\|WP_011062368.1\|4715924_4717298_+\|pyoverdine-tailoring-dipeptidase-like-protein-PvdM	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	6.66575e-97
NC_004129.6\|WP_011062382.1\|4761243_4763070_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	2.58188e-115
NC_004129.6\|WP_011062375.1\|4738540_4745122_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0

>NC_004129.6|WP_041774386.1|4722422_4724897_+|TonB-dependent-siderophore-receptor
MSMPAQHRLTPLTKALLRQAFSPKLASRTLGLALTLPLMAQVQAQEIHFNIVSQSMSAALQEFGRQANMQVLYNPDDVQGKRSNALSGSYSPERAIAAMLNGTGVAYTLKDNSVTIRNHGGNGSLELGTSTISGQGLGTTTEDTGSYTTGAMQTASKLSLTARETPQSVTVITRQRMDDQNMRSLEDVLKATPGISITKDGPQRPTFYSRGFAVENLMTDGLPNDLTHYLSRDMNSSADMAIFDHVEVVRGATGMMQGAGNPSAAINMVRKRPTATPRVTVTGSAGSWDDYRTEIDASNALNESGTLRGRVVAAYQSKGSFQDFVSSERNVFYGITEADLNEDTTFTFGASNQSGRNNTSWGGLPVAADGSDLHLKRSTYLGSKWEYWDQNNTTAFSRLEYRFANSWKMLLSASKSWSDLNMLGSIPERMGANYDEFGQNIGRYDYEDQQNSYDGYVTGPFSLFGRTHELVVGASRRDLTFKGKGLPIDLETHTNIYKPSGIPKPDMSANPWTQRRTSQLEGTYVTTRLSITDDLKLILGGRLDWYDYDVTTTWNGKASASSLPNKVTRHLTRYAGAIYDLDQNHSVYVSYTDIFKPQTELDTSNGALKPIEGKNYELGIKGEYFDGKLNASAAIFRIDQENRAKVLNPNQCNPVGSTCYEAAGQVRSEGIELEINGTLAPGWELGAGYTYASVKYTKDSNEANVGRLFDTDIPRSVFKAFTTYQLPGDLNRWTIGGGIYGQNTIYNKGTNDYLSTFDYRIEQKSYALVDLMTSYKASENVNIRLNVNNLFDKRYYQSIGTNTDYGTSLYGDPRNAMVTVSWSL
>NC_004129.6|WP_011062372.1|4720674_4722327_+|cyclic-peptide-export-ABC-transporter
MTDPKRGAFNGLLALLRPFRTIVVISVALGMAGGLAITLLLATINNALHSATGMTQGVVLTFAALCLLALVSSIVSDIGTNYVGQRIIAALRKDLGEKVLSAPITQIERYRSHRLIPVLTHDVDTISDFSFAFTPLAIATTVTLGCLGYLAYLSVPMFLMMVVAIIIGTSVQLVAGGKGIKGFDEARDHEDELQRYYNAIASGAKELRIHRPRRFRMNTQRIQKTADRISDIQVRSVNIYILAKSFGSMLFFVVIGLALAMQAYYPNPDPAVITGFVLVLLYMKGPLEHVVGYLPIVGKAKIAFARISELSERFSSPEPHLLMDDSEAPQAVVHSLELREVRYSPPPVEGSEPFHLGPINLNIKQGDIVFIVGENGCGKTTLIKLLLGLYQPQSGEIRLNGEAVTDRARDDYRQLFTTVFADYYLFDDLVQGNAGKSLDVATQYLNRLEIAHKVSVKDGAFTTTDLSTGQRKRLALVNAWLEERPVLVFDEWAADQDPAFRRIFYTELLPDLKRLGKTIIVISHDDRYFDIADQLVRMKAGRVLTELQPA
>NC_004129.6|WP_011062371.1|4719610_4720474_-|N(5)-hydroxyornithine-transformylase-PvdF
MTKKNLVYVWSLRNAAADKAGQPVAYKDHERYMKSVLEFLVQTLNQTPLGEAYELVGVVYDDDEQSPRDQQLVSDYGFAYQPGRQWLYPADLEVQGKRVNDLLLSVPSTYRRHPRGSAEHIAGKQDFERRLHDTLVELKADIVVLDGLLVILDELVRPGAPFARRIMNIHPGITRIESPYERRGAYATWNALYGARGQKVVDWATKETEPTAPLYLTGASFHYVDNGIDSGEVLHDVLNTEIGPEDTILELRWNNFNNSLFPALRQGLWLMLENLRQAQAGKARDVA
>NC_004129.6|WP_011062370.1|4718662_4719556_+|formylglycine-generating-enzyme-family-protein
MKPIACSSLAALAGCLISLNAHAVEPPKPGSVFKDCKNCPEMVVLPAGSFVMGTPEDEVGREPDEGPQHTVTFKNAFAMSRFHVTAAELDAYIRETGTVIKDGDDRPGRLCQASKPRYEQGPRQPAVCVDYADVQAYTQWLSKKTGKHYRMVSEAEREYAARAGSTGSFPFPFDEEGQYQITKHANTYGPKDGFSFTAPVGSYPPNAFGMYDMHGNVYEWVADCWHPDYVGAPADGRAWMEESEGVCLDAQIRGNDWGEAPVFSRSGNRNSRKREVRGDWLSFRVVRELEQPGASHK
>NC_004129.6|WP_011062369.1|4717319_4718615_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MTNRRTFLKQAGLLAAALPLGNLAISQARADSATASASQWTQLRQLFDLDPDYVHLANFLITSHPRPVREAIEKYRAVLDRNPAMAMDYDTQYTWKREAQVRESVGRYLQIKPGQVALTGSTTEGLALMYGGIHVRPGQEILTTVHEHYSTRNALKYRTQRDGTQVRTIELFKSPHRMSTDEVLGNIDRNIRANTRVLGMTWVQSGSGVKLPIGEIGKLVDQHNRNRDEHERILYCVDGVHGLGVEDITFADLNCDFFVAGTHKWMFGPRGTGIFCSRSEQLEHLTPMVATFSENQNFATTMTPGGYHSFEHRWAVDQAFDLHMQLGKANIQSRIHELNSYLKQRLQEHPGIELVTPLSPEHSAGFTFFRGQNLDTDATAAWLIENRILVDAVDRDAGPVVRMAPGLLNSEADIDRTMDLLGKRLRSSKTA
>NC_004129.6|WP_011062368.1|4715924_4717298_+|pyoverdine-tailoring-dipeptidase-like-protein-PvdM
MIKISGKKTLYLSLLILIIAALGVGAGAAWHYYWKDRVSYPNEIVKHANDLQERIISFDSHITVPLDFGTEGSEADKDTSRQFDLVKAGRGRMSGAALSILAWPEMWNGANAPHRPTAGFVEEARHQRETRYRIIQGMVRDFPNQAAIAYTPADLRRIASEGKVAVVISLLNAYAMGDDLDQLDQWAARGMRLFGFSYVGNNDWADSSRPLPFFNDTRDALGGLSPIGKQAVQRLNDLGVVIDVSQMSSKALDDVASLTRAPVVASHSAPRALVDIPRNLSDQEMQQIKATGGVIQVVGFSTYLRPLSQPTLDKLNALRKRFDLGPLQGLENALMPGDAVITIWPEQRFGEYASSLYGILDEEPKASLKDYVDAIDYTVKKVGIDHVGISSDFNEGGGVNGWMSVADNRNVTAELIQRGYSDIEIAKLWGENYLRVWEQVQKLAKPAKPAPQPAIAG
>NC_004129.6|WP_011062367.1|4714088_4715717_-|twin-arginine-translocation-signal-domain-containing-protein
MRFSRRGFLTGLAVTGAAIPVAYYTQKELLRQDVRRKEEQEITPGEAKLEVALDPGVRLADHLRGIWDIEFLDANGPQSLPRKGCELLLDAGPTGRGLRGLLGRAQSLRGDGPVEFMVQGDLASVDAARLRWRLFAGGRIAGAPSYECQVVLDEVWASWGNAGSGTLSGSLQSLQASPLAPVSAARFVARKRVFPAARDQSGLSPALLAWLVSPQHRLFHQLWHASRDRWHTLPKDKRNSLRGLGWQPGPVKHERDARGRRKHRNASGIDFLFMHRHMLLHARSLQPDLVSWQQLPQPCARLEQDRQAFIRYYENHDGCSVPPAWVADDDEEFTQWLHGLKSDAAFYGNFQVWESQYQDPEYLSRLTLGQFGSEVELGLHDWLHMRWADVARDPSNGMPVMEARLSSDFAGRWYQPQNDFLGDPFSSHVHPMFWKFHGWIDDRIDDWFRAHERYHPGEVLRREVNGVPWFAPGRWVEIDDPWLGASTHGCGPLGNAPGEMSLEMDQEVMKLALRIALSRDEEVPDLLKRAPRRPWYAQHLKL
>NC_004129.6|WP_011062366.1|4713640_4714078_+|SMI1/KNR4-family-protein
MNVEDFKQLLDERKRSHPIWFELPSDRLASQTQILEAQQALGLQLPADYTWFLKECGGGYFALAMLYSLDSSSDFHLVQINRAHPAITGRHLLFSENGCGDFYGFRIENRHCLAPVEFFDHSCGQWQTSRYNGLLSFLAEVALSN
>NC_004129.6|WP_011062365.1|4713322_4713622_+|DUF3349-domain-containing-protein
MSLENVPHDPLADLLALLRKVYPNGLDNRDYKRLLVLLYPHLCDRNLAQLMAQLTHRDADLILNDLYAAVTGQPPPAAELEALQALLERHGARALLTDD
>NC_004129.6|WP_011062364.1|4711830_4713222_+|efflux-transporter-outer-membrane-subunit
MKVHLTLLAASVLLAACSSPAPRPESGLQAPASWHSPASQGDRQQDLRWWTRFGSPELDQLIAEARAGSHDLAAAMARVRQAQASAIVAGAPLLPSVNGTFNASRRKQLRGNNSSQLDSSSNSTVTNSFDAGLSATYEVDFWGGRRAAYDSALLGVQASEFDQATVELTLLSGVANSYAQVLSLREQSRIAELNLANAQNVLQLVQTRYDSGSATALELAQQKSLVAAQQRQVPLVQQQAEEAQITLATLLGRPVQSLKLNDQPFAQLNWPTIDAGVPSELLTRRPDIAGAEARLAAAQADVKVARAAMLPTLTLTANLGSNADKLGNVLRNPFYNLTSGLVAPIFNNGRLSAERDRTTARQQELLETYRGAIINGFADVEKALNSIRGLDQQRQWQSEELNQAQRAFEIAQSRYQAGAEDLLTVLETQRTLYTAQDQNVQLRLSRLQSSIALYKALGGGWSH
>NC_004129.6|WP_011062374.1|4725295_4738528_-|non-ribosomal-peptide-synthetase
MQALIDSVGTLSSKERRALAILLKEKGINLFGIAPICSRGADEAPVLSYTQESQWFLWQLEPDSTAYHITTALRLTGELDLDALRHAFDTLIARHETLRTTFSEDDGTAVQVVHPPAPLDIEVIELHAGGLSYEAQVHALTDSKSQPPFDLRNGPLLRAKLLRVAADEHVLVLTQHHIVSDGWSMGVMVDELIQLYAGYRQGRTVSLPDLPIQYADYANWQRQWMDAGERERQLGYWLEQLAGEQPLLMLPLDHPRPAIQSYRGALLDIPLPEELRLGLKQLAQREGATLFMLLLASFQVLLHRYSGQADIRVGVPTANRNRVETERLIGFFVNTQVFKAEVDGQLGFNDFLQQVKQTALMAQSHQDLPFEQLVEALRPERSLSHSPLFQAMFNHQTAVKKGGQSQRLDDLSIETLSWQGRAAQFDLTLDTFESEDGLWASLTYATDLFEASTIERLAQSWVQLLQGIVQQPRQRLGDLPLLGAAEQHQLLHEWTPATGEFPSDGCVQQLVEAQALKSPESEALLFAGQCLSYRELNARANRLAHKLIELGVGPEVRVGVALQRTPEMVVALLAVLKAGGAYVPLDPDYPQDRLAHMLRDSQAQILLTENALLSLLPSVESLQTLQLDAQPGWLDAYSPENPPQRATADNLAYVIYTSGSTGLPKGVAIAHRNVLALIDWSNRVYSTADLQGVLASTSICFDLSVWELFVTLSSGGSIVLARNALELPELADRDRVRLINTVPSAIAALQRSGQIPPSVRIINLAGEPLKQALVDSLYQQPGLVHVYDLYGPSEDTTYSTYTRREAGGQANIGRAISNTQSYILSPDLQPVPVGSAGELYLAGAGVTRGYLARPGLTAEKFVPNPFSSDGGRLYRTGDLTRYRADGVIEYIGRIDHQVKIRGFRIELGEIEARLVQQAAVREAFVLAHDSENGQQLVAYIVPSEATPTVEAQAALRDSLKTALKEHVPDYMVPAYLLFLEALPLTPNGKLDRKALPKVDAQQMQQVYVAPQSELEQQIAAIWADVLKLEQVGATDNFFELGGDSIISIQVVSRARQAGIRFTPRDLFQYQTVQGLAAVAEQGEGGVQIDQGPVGGATALLPVQQWFFESPMSERHHWNQSVLLKPAQPLRAEVVENALQALWVQHDALRLQFSQEADGWSARFADAGQRPELLWQVAVDGAQAMEQSAIEAQRSLNLQDGPLLRAVLFSLEDGSQRLLLVIHHLVVDGVSWRILLEDLQRAHAQLSAGQPLALPAKTSSTQAWAEQMQAYAQGAALQEELKYWQAQLQGVESNLPLDRPVTELQNQHASSLSSRLDKARTQRLLQDAPAAYRTQINDLLLTALARVITRWTGEASALVQLEGHGREDLFDSIDLTRTVGWFTSMFPVKLTPQASLADSIKFIKEQLRAVPNKGIGFGALRYLGDAQAQQALAALAVPRITFNYLGQFDGSFDEQDSLFKPSGEAKGDDQSPLAPLSNWLSLDGQVYGGELSLNWTFSQQMFDTATVQRLADDYTEELKALVAHCCTPELAGATPSDFPLAGLNQQQLDRLPVAMASVEDLYPLSPMQQGMLFHTLYEQAAGDYINQLRVDVDGLDPLRFQQAWQAAIDRHDILRTGFIWQGEVSTPLQVVHKHIALDCTEHDWRGQPQQQEALDTLATAERQRGFELDAVPLLRLTLVRIDEQRYHLIYTNHHILMDGWSNSQLLGEVLQRYAGQLPSHAAGRYRDYIAWLQRQDAQACESFWKEQLQTLDEPTRLTQALSRVADIAAGTGHGKHHRELDLAQTARLGEFARQQKVTVNTLVQAAWLLLLQRCTGQDSVVFGATVAGRPAELKGIEQQVGLFINTLPVVATPRPDMTVSQWLQAVQNRNLALRDYEYTPLYEVQRWAGLGGDALFDNILVFENYPVSEALEKGAPAQLRFGAVGNHEQTNYPLTVAVNLGASLSFEFIYARESFSEPSMVQLGGHLQGLLLSLMEHAQTGLGELPLLTQDEQHRIRQDWDHTDVVYPTERFVHQLFADQAAKAPDAPAVFFAEQRLSYRELDTQANQLAHKLIELGVGPEVRVAIAMPRCAEIMVAFLAVLKAGGVYVPLDIEYPQDRLRYMMQDSGAWLLLTQNHLLDRLPIPEGLPTLSVEGAADFAAYPVTSPQVDLAEENLAYVIYTSGSTGLPKGVAVSHGPLAMHSLATGERYEMSPADCELHFMSFAFDGSHEGWMHPLIYGASVLIRDDSLWSPEFTYEQMHRYGVTVGVFPPVYLQQLAVHAERDGNPPAVRVYCFGGDAVPQASYDLAWRVLRPKYIFNGYGPTETVVTPLIWKAKAGDPCDAAYAPIGNIVGNRSAYVADANLNLLPVGVAGELYLGGLGVARGYLDRPGLTAERFIPDPYSTAGARLYRSGDLTRYRTDGLVEYVGRVDHQVKVRGFRIELGEIEARLLEQDPVLEVAVIAQPGPSGQQLVGYIVPVDAEVASSNERQAQLRESIKARLRESLPDYMVPTYLLFLEALPLTPNGKLDRKSLPKVDAQLMQQTYVAPQNPLEQQIAAIWADVLKLEQVGVTDNFFELGGDSIISIQVVSRARQAGIRFTPKDLFQHQTVQGLATVAEQGEGGLQIDQGPVRGQMALLPIQQWFFDTPVPERHHWNQSVLLKPLQALQAQPLESALQALTVQHDALRLRFTEHQGTWRAAFADAEEPVQLLWQANVADAQALQQFAEQAQSSLNLQEGPLLRAVLFTLADQSQRLLLIVHHLVVDGVSWRILLEDLQALLGGQALPAKSSSTQAWAGQLQAYASSAALQQELGYWQAQLQGVESNLPCDHGHDGLQNQHASSVETRLSKGDTQRLLQDAPAAYRTQINDLLLTALARVITRWTGDSSALVQLEGHGREELFDSIDLSRTVGWFTSVFPVKLTPQPVLADSIKFIKEQLRAVPNKGIGFGALRYLGDAQAQAALAALAVPRITFNYLGQFDGSFDDQQAWFAPANEAKGDDQSLHAPLGNWLTLNGQVYGGELSLGWNFSRAMFDTATIEHLADDYARELKALIEHCSQPEHRGATPSDFPLAGLSQQQLDRLPLALAQVEDLYPLSPMQQGMLFHTLYQEEGGDYINQLRVDVDGLDPERFRQAWQATIERHDILRSGFLWQGELPAPIQVVYKQVSLECVEHDWRSTQQAPQALDTLAATERQRGFDLAAAPLLRLTLVRTGEQRYHLIYTNHHILMDGWSNSQLLGEVLQRYAGQLPQHLTGRYRDYIAWLQRQDATLSEHFWKQQLQGLDEPTRLAQAIAAGARAPLEEGHGSHGCTLDEAQTRSLGEFARQQKVTVNTLVQAAWLLLLQRCTGQDTVVFGATVSGRPAELKGVEQQIGLFINTLPVVAAPLPQLSVSDWLQAVQERNLALRDFEHTPLYDVQRWAGLGGEALFDNILVFENYPVSEALEKGSPAQLQFGAVGNHEQTNYPLTLSVFVAERLSFDYSYSYQHFSGAVIRQLAEGLQHLLLAMIGNPGQCLGDLSLLSDGQRTVVEQESRRAAGQVGRGLNIHQLIEAQAARTPDAVALLCAGEQLSYGQFNQRANQLAHKLIEQGVGPDVRVGIAVERGLDMIVGLLAVLKAGGAYVPLDPEYPQERLHYMMQDSGIQLLLTQSPLLERLQDGLAVPYLCLDQAPVWLAGMAQGNPPERSSAENLAYVMYTSGSTGRPKGVGITHNALSQHARATASHFNMTATDRGLQFSTFNFDAFVEQLYPALIRGASVVIRGKALWDSETFYRELIEQGISIVDLSTAYWFMLGKDFAAKGPRDFGRLRQLNLGGEAMPAEGVAAWKQAGLKHACLLNTYGPTEATVSATAHDCGAYLKGTEPLPAVIPLGKALPGRSIYLLDSSGNLPLNGVMGELMIGGDLLARGYHDRPGLTAERFIPDPFSSDGGRLYRSGDLARYDAEGVIEYAGRIDHQVKIRGFRIEMGEIEARLLELTPVREALVLAQDGASGPQLVAYVVPAAQVAADTPQAQAQLREQLKAALKEVLPDYMLPAHLLFLEALPLSPNGKLDRKALPKADASLLQQAYIAPQSELEQQIAALWSQVLGVDQVGLDDNFFELGGHSLDALRLIGAINQALAVQLSINALFTAPTVGQLAGVIAAGQPDSAQNVIALGGSGQPLFCFHPAGGSVYGYLPLAAQLRDRCAVYGVLHQAYLQTDWSEVSWQAMIERYVASIRQVQPSGPYYLAGWSLGGSIAMDVASELEAAGETVRFLGLLDPTPPQGAGDDQIQTQEMPVTVTAESEWQAIIDKLCQQFPGSAEMIESRLRREAELDWQSIHGWVAGNIPLAPGELDRVVGLFKAEFDASLVSAVFNDLSALSAAYAYRPLRVAPRLWWSSDYARERIQIMEQAMGREVQGGEIAASYHIEARHEAMVDSRALLESFTEQLLTCLN
>NC_004129.6|WP_011062375.1|4738540_4745122_-|non-ribosomal-peptide-synthetase
MDNTTALKIVKGFILLPLEKRKVYLQKMLEQGISPANLPIPEVRLSQERLPLSYAQQRQWFLWQLAPESTAYHIPKALRLRGKLNVEALQRSFDSLIARHESLRTHFVEEADTALQVVAPEARLELVRQALPAQASQQQINAAVQDFVQAQTRRLFDLLAGPLLRVGLLQVAEDDHVLVLTQHHIVSDGWSMQVMVDELIAFYIGFCQGQTASLPALPIQYADYALWQRHWMEAGEKDRQLAYWTAQLGGEQPLLELPLDRPRPVVQSHRGGRLELTLEQPLSEALGSLAQREGVTLFMLLLASFQTLLHRYSGQADIRVGVPIANRNRVETERLIGFFVNTQVLKAEIDGQMSFSQLLQQVRQTALAAQAHQDLPFEQLVEALQPERSLSHNPLFQVMFNHQVEAAGAGKPLNLPGLSIEALDSQGQSAQFDLTLDTVETQGRIAASLVYATDVFDAATIERLAAHWRQLLQGVASQPQQRIGLLPLLGADEQAQILDQWNRLQQAFPSRACVHQLIEAQAARAPQAIALTFAGQSLDYQQLNERANRLAHKLIEQGVGPNVLVGLAVERSLEMVIGLLAILKAGGAYVPLDPAYPQDRLQHMMQDSAIALLLTQEHLLQGLPAFAGSTWLLEQPLDGYRVDNPEVGVTPEDLAYVIYTSGSTGKPKGTLQPHHNVLRLFAATEQWFQFGAEDVWSLFHSYAFDFSVWEIFGALLYGGRLLIVPQEVARSAQDFYPLLCSEGVTVLNQTPSAFRQLMHVACSAEPAHRLRYIVFGGEALEVNTLQPWFQRFGDQRPQLVNMYGITETTVHVTYRPLSVADLSLTGASPIGELIPDMAWYLLDGNLQPVPKGCIGELYVGRAGLAWGYLNRGDLSAARFVPDPFGEAGGRLYRTGDLARYQADGSIGYIGRIDHQVKIRGFRIELGEIEARLLELPAVREAVVLAPEGPDGPQLVAYVVPAGLDWNGQDPLAEQLPLRDAIKAGLREHLPGYMVPAHVLFLQALPLTANGKLNRAALPAIDGSLLQQAHVAPRSEREQQVAGIWAQVLKLEKVGLTDNFFELGGHSLLATQVMSRIRQELGIEAPLKLLFEGESLEDFVRLLGPETAQPLQSIPLVDRQQPLVVSYAQERQWFLWQLDPDSSAYHIPMALRLRGALDSQALQSSFDALIARHESLRTHFVESAGGLTQVIAAQARLPISQQDLSLLVEAGNTDDLIKQVIDTQVRQPFDLRQGPLLRATLVRLAEDEHVLVLVQHHIVSDGWSMQLMVEELIRLYGAHSQGQQAELPALAVQYADYAAWQRQWMEAGERERQLDYWLQQLEGGAQVLDLPLDHPRPLQQSHEGARHGISLDGALPGALKQLAQREGVTLFMLLLASFQVLLHRYSGQADIRVGVPTANRNRVETERLIGFFVNTQVLKAEVDGQLSFSDFLSQVKRAALEAQEHQDLPFEQLVEALKPERSLSYSPLFQVMFNHQAAARQDAATLEVPELQVQMLSGEDSTTQFDLSLDTFESGDRLWASLTYACDLFEASTIERLAQSWVQLLQGIVQQPRQRLGDLPLLGAAEQHQLLHEWTPATGEFPSDGCVQQLVEAQALKSPEAEALLFAGQSLSYRELNARANRLAHKLIELGVGPEVRVGVALQRTPEMVVALLAVLKAGGAYVPLDPDYPQDRLAHMLRDSQAQILLTENALLSLLPSVESLQTLQLDAQPGWLDAYSPENPPQRATADNLAYVIYTSGSTGLPKGVAIAHRNVLALIDWSNRVYSTADLQGVLASTSICFDLSVWELFVTLSSGGSIVLARNALELPELADRDRVRLINTVPSAIAALQRSGQIPPSVRIINLAGEPLKQALVDSLYQQPGLVHVYDLYGPSEDTTYSTYTRREAGGQANIGRAISNTQSYILSPDLQPVPVGSAGELYLAGAGVTRGYLARPGLTAEKFVPNPFSSDGGRLYRTGDLTRYRADGVIEYIGRIDHQVKIRGFRIELGEIEARLVQQAAVREAFVLAHDSENGQQLVAYIVPSEATPTVEAQAALRDSLKTALKEHVPDYMVPAYLLFLEALPLTPNGKLDRKALPKVDAQQMQQVYVAPQSELEQQVAAIWADVLKLDRVGMSDNFFELGGHSLLVAQVVTRVKQQFGVDMPIKSLFGAESLAAFVEKVQALRQTTSSLQDELAKSLEALKRLSPDDLEKIIS
>NC_004129.6|WP_011062376.1|4745121_4756269_-|non-ribosomal-peptide-synthetase
MNAEDSLKLARRFIELPLEKRRLFLKALDKEGVDFSLLPIPAGVAVPDRQALSYAQQRMWFLWQLDPQSAAYNLPNAVRLIGPLDRAVLAQAFDWLLERHESLRTVFALEDDEPRQVIQEARVDIDYRELCDLDPAQRETRVQQLADAEARRPFDLQQGPLLRVCVLGLGEQEHVMLLTLHHIVADGWSMGVLIEEFLHAYDSLLQGEVPNVPALPIQYRDYALWQRSWLEAGEQERQLDYWRAKLGDEHPPLKLPTDHPRPAHSSRQGRRLDFALEQPLAQQLGALARQQGVTLFAVLLAGFKLLLSRYSGQQDIRVGVPIANRTRQEAEGLIGFFVNTQVLRTELSPQLTVQQLLADIRETTLGAQAHQDLPFERLVEALHLERSLSHSPLFQVLYNHQPQVTELTTLHSRSGLQVQALPRNERTVQFDLTLDTFERGGQLQAAFTYDCQLFEAQTIERMAGHWQNLLWAMVREPQSALAELPLLSAQQHRGFLAQGAGAEEVFSAESVLELFARQVAAQPEAPALVFAGQCLSYRELDLRASRLAAALVARGVGPEVPVGIAVERSLEMVLGLLAVLKAGGAYVPLDPQYPEQRLSYMLEDSGVRLLLSETAVQPRLPVAARVEVLLLDQAQAWAPDSDPLAALPGMAAGNLAYSIYTSGSTGAAKGVSITHGALANYVQAIIQRLPLGAARTMAVVSTIAADLGHTTLFGALCSGSCLHVIDLDTGLDADAFGAYLHTHQIDVLKIVPSHLQALMSGEEPARSLPRQCLVLGGEACPAALVRRIATLAPECAVFNHYGPTETTVGALTMAAATLADERAVVPLGLPLANVRARVLDASLQPVAPGTPAELYLGGAGLARGYHQRAALTAERFVPDPFSGDGQRLYRTGDLARYLDGGVIDYLGRIDHQVKIRGYRIELGEITAALKQLPQVEDAVAQVVSVAGESQVAAYVVLAKAQEPEAAWQEIRRQLAVALPDYMLPMHFLALAGMPLTPNGKLDLRALPPLQQQAPVEAFVAPVSELQQGIAAIWQAVLKVERVGLGDNFFALGGHSLLATQIMSRVRRLLGADVPLRVLFETSRLDEFVEQVQACAGAAALPQIEVLERDGPLPASHAQQRQWLFWQMHPQSTAYHTPIVVRLQGELDQAALQQTFDALAQRHEAFRTTFTQHQERLCQVVHAQGAISVAWERLTPGLPREAVQARALEETQQLFDLEHGPLCRARVLQIAERDYLLVVTLHHIISDGASMSVLAREFVALYRGLIQGQAPQFEPLSVQYADYANWHRSWLEQGEQQRQLDYWRQQLGLEHPVLELPLDHPRQALVSHRQERLGLRLPADLEQGLRRVAREHDMTLFQLFLGSFALLLHRYSDQPDIRIGVPVSNRRHQEMEGVMGFFVNTLVMRVELAPSLPVGQLLRQVKATALAAQAHQDLPFDRLVDALKPQRALDQNPLFQVMYNHLSIAGESTDGTSLPGLQAEEMVLQGGTAQFDLTLETLETDAGINASFIYAGELFEVSTVQSLADHWRNLLQGMLEPQQALGELPMLGQDEQRRIRQEWDHTDAVYPTHRFVHQLFADQAAKAPDAPAVFFAEQRLSYRELDTQANQLAHKLIELGVGPEVRVAIAMPRCAEIMVAFLAVLKAGGVYVPLDIEYPQDRLRYMMQDSGAWLLLTQSHLLDRLPIPDGLPTLSVERAADFAGYPASAPQVDLAEENLAYVIYTSGSTGLPKGVAVSHGPLAMHSLATGERYEMSPADCELHFMSFAFDGSHEGWMHPLIYGASVLIRDDSLWSPEFTYEQMHRYGVTVGVFPPVYLQQLAVHAERDGNPPAVRVYCFGGDAVPQASYDLAWRVLRPKYIFNGYGPTETVVTPLIWKAKAGDPCDAAYAPIGNIVGNRSAYVADANLNLLPVGVAGELYLGGLGVARGYLDRPGLTAERFIPDPYSTTGARLYRSGDLTRYRTDGLVEYVGRVDHQVKVRGFRIELGEIEARLLEQDPVLEVAVIAQPGPSGQQLVGYIVPVDADVASSNERQAQLRESIKARLRESLPDYMVPTYLLFLEALPLTPNGKLDRKSLPKVDAQLMQQTYVAPQNDLEQQIAAIWADVLKLEQVGVTDNFFELGGDSIISIQVVSRARQAGIRFTPKDLFQHQTVQGLATVAEQGEGGLQIDHGPVRGQMPLLPIQQWFFDTPVPERHHWNQSVLLKPLKPLSAEALQQGLQALLEHHDGLRLKFVEEGAAWVATYAPLGQVTAAPLAAMQADALLWLADDATEDSLQALCDTAQRSLDLQQGPLLRAVLFTLRDGTQRLLLAIHHLVVDGVSWRVLLEDLHQALVQQAAGQTIKLPAKTSSSQAWAGQLQAYARSAALQQELGYWQAQLQDVESGLPCDRATDQVVIKDARSVSTELDPSYTQRLLQDAPAAYRTQINDLLLTALARVITRWTGDSSALVQLEGHGREELFDSIDLSRTVGWFTSVFPVKLTPQPALADSIKLIKEQLRAVPNKGIGFGALRYLGDEAAQQTLAALAVPRITFNYLGQFDGSFDEPDAWFAPSAEAKGADQGAQAPLGNWLSINGQVYGGQLKLGWTFSQAMFDTATIEHLADDYARELKALIEHCSQPEHRGVTPSDFPLAGLNQQQLDQLPLALAEVEDLYPLSPMQQGMLFHTLYEQGAGDYINQLRVDVDGLEPERFRQAWQAAIDSHDILRSGFLWQGELPAPIQVVHKRIRLDFVEHDWRANEAVPAALDGLAEEERLRGFDLLAAPLLRLTLVRTGEQRYHLIYTNHHILMDGWSNSRLLGEVLQRYAGQFASHAPGRYRDYIAWLQRQDAQLSETFWKQQLAVLDEPTRLAQAISRGGQALAGKGYAAHQQHLDLQQTQRLSEFARQQKVTVNTLVQAAWLLLLQRYTGQDSVVFGATVSGRPAELKGVEQQIGLFINTLPVVAAPRPDMPVSDWLQLVQERNLALRDFEHTPLYDVQRWAGLGGEALFDNILVFENYPVSEALAQGAPAQLSFGMAANHEQTNYPLTLSVYLGQTLAFDYSYALEHCAEANIRQLAGYLEQVLMALVEQPQASIGELALTGATERRLIEEQRSRTPARDLSPLCVQQLIEAQAARTADAVALLCAGQQLSYGQFNQRANQLAHKLIEQGVGPDVRVGIAVERGLDMIVGLLAVLKAGGAYVPLDPEYPQERLHYMMQDSGIQLLLTQSPLLERLRDGVEVPHLCLDQQGLDGYSLNNPAPRAQADNLAYVMYTSGSTGRPKGVDISHRALTQHAQVSRDYFNMSAADRGLQFSTFNFDAFVEQLYPALICGASVVIRGKALWDSETFYRELIEQGISIVDLSTAYWFMLGKDFASREPRDFGRLRQLNLGGEAMPAEGVAAWKKAGLKHACLLNTYGPTEATVSVTAHDCSRYLQDGQALPSQMPLGKGLPGRSIYLLDNSGNLTLSGATGELMIGGELLARGYHDRPGLTAERFIPDPFSSDGGRLYRSGDLARYDAEGVIEYAGRIDHQVKIRGFRIEMGEIEARLLELPLVREAVVLAQEAAGGPQLVAYVVAAAGVAVESPEQQAQVREQLKAALKEVLPDYMLPAHLLFLEALPQSPNGKLDRKALPKADASLLQQAYIAPQSELEQQVAAIWAQVLEVEQVGMNDNFFELGGHSLLVTAMVSRVQLKLGRQVSVQMAFEFPTLGLFVSQLQQAPGQVQGADLSALELLLDEMEAV
>NC_004129.6|WP_011062377.1|4756481_4757450_+|siderophore-interacting-protein
MSSAQSLTGLLTQGLRKLTGIDRSRPKGYRVINVELKQRIHLSPSMARLVFTGEDIAQARTLAPDQRIKLLFPGADGTPSQLPVEGDWQAARRKLPAEQQPPMRTYTIRALRLHPAQMDVDFVLHGVNGPASAWATHARPGDRLQMVVPNKAYSGDPGGYEWLPPAGIRKVLLMGDETALPAIAGILEELQGYPDHPDVQAFIEVPYESDCIDLRCHPLARINWLPRDLLGARHGETLIHAARELAELPPANSQRRPIKVSERNDEQRLWETAQPADNDFYAWVAGESATVMNIRRHLINERGQERRNLTLMGYWRLGSSLG
>NC_004129.6|WP_015636428.1|4757631_4758372_-|thioesterase
MTQLNLLCLPYSGASAMVYSRWRRKLPQWLHLQPLELPGRGARYAEPLHTDMRELARQLALEIRGTLRTPYALFGHSLGALLACELAHALRALGCPEPVALFASGTAAPTLRTEYDRGFAEPKTDEQLIEQLRTLNGTSEEVLANQELMSLTLPILRADFLLCGRFRPVQRPLLNCPVHVLGGKTDRATTEQLIGWSKETHGSFSVDMLAGGHFFIHEHEAKVLSLLKGHLEVHRRRHLQPVAAVS
>NC_004129.6|WP_011062379.1|4758442_4759615_-|MFS-transporter
MANPYRELFKAPGSRAFVLAGMIARMPISMTGIGLITMLAQLHGGYALAGSVAATFALATAFCAPQVSRLVDRYGQSRILPLAAGLGGGALLALLLCTRLQAPHWTLFLCAALAGCMPSMSAMVRARWTELYRGQPQLQTAYALESVLDEVCFIVGPPLSVGLSVGLFPEAGPLAALLMLVLGVSVFVMQKSTEPPVHPHEEGHAGSIIRSVEIRLLLLLMTAMGTIVGVVDVVSVAFAQQQGQPAAASIVLSVYAIGSCLAGIAFGALKLATPLPRLFMYGGIATALTTLPLLLASNILGLSLAVFVAGLFFSPTLIVAMALVERSVPPAKLTEGLTWLVTGLSIGVALGAAGSGALVDQFGARSGFWLALAGGAVVLGAALQSYRRMR
>NC_004129.6|WP_011062380.1|4759750_4760338_+|TetR/AcrR-family-transcriptional-regulator
MSSRPRAAMIEQTRARLIASARQAFARLGYAKTSMDDLTAEAGLTRGALYHHFGDKQGLLAAVVEQIDSEMDERLEAISAAASDPWQGFAQRCRAYLEMAQEAEIRRIVLQDARAVLGQRQPAEEHCIDSLSRRLQALVEAGLITPAPSQALARLINGSLVDAALWIAAAEQPGQRLQQALQALELLLRGLQPPR
>NC_004129.6|WP_011062381.1|4760450_4761251_+|glucose-1-dehydrogenase
MQISLDQQVALVTGASSGIGAATAIALAAAGASVVLNYNSQAAPAEQLAARINAEGGRAIAIGADVADEAQVEALFAQAIEAFGFLDILVANSGLQKDGPAASLSLDDWNRVIGVNLTGQFLCARAALNIFQRQGVRAGVSKAAGKIIHMSSVHQLIPWAGHVNYAASKGGVDMLMRTLAQEVSQQRIRINGIAPGAIRTAINRTATEGAAEQELLKLIPYGRVGDPEDVANAALWLASDASDYVVGSTLFIDGGMSLYPEFRGNG
>NC_004129.6|WP_011062382.1|4761243_4763070_+|glycoside-hydrolase-family-15-protein
MADQHPTAQRPIDAHGIIGDMRSAALVDDQGSIDFFCWPEFDSPSIFCSLLDSPAAGIFELAPVLADARRQQIYLPDSNVLQTRWLGTEAVVEVTDLLTIDDDPEQLPLLIRRVRVVSGQATLRLHCAPRLDYGRAATGARQEGDSVCFEAPGQPGLRLLGDQPLYLERDSARAEFVLQQGQGAEFILGGVDDLRVRHGDSELHLTRTLKFWRDWIGQSNYRGRWREMVNRSALALKLLTSRRHGAILAAATFGLPESPGGERNWDYRYTWVRDASFTVYAFMRLGFVEEANAYMGWLRGRVSDCHGQPMKLNILYGIDGRQELPETELGHLSGHGGAQPVRIGNQAYDQVQLDIFGELLDAVYLVNKYGEAISHEGWKHTVQVVDQVCDSWQSKDVGIWEMRGEQHHFLHSRLMCWVAVDRAIRLASKRSLPAPFARWDQTRQAIYDDIWSRFWNQKHGHFVQHIGSTALDGSMLLMPLVRFVSAKDPRWLATLDAIEKSLVRDGMVYRYRNDDSQIDGLAGTEGAFAACSFWYVECLARAGRLEQAHLEFEQLLRYANPLGLYAEEFDSHGRHLGNTPQALTHLALISAASFLDRRLSGDKSVWQP
>NC_004129.6|WP_011062383.1|4763136_4763514_+|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MPDSPIIAVMIHAADWRAATHWYAQAFPQARRVLHEPDDFGHLQLAGLSLEIVPCDAKVGQGPAGTVVYWQVADLPGQVQRLTGLGGRLYRGPMVIEGGDSICQVQDPWGNCIGLRQPARLGQAS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_004129_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004129_6

4858355-4858492

Orphan

Consensus_repeat	Method
CCCGTAGGAGCCGGCTTGCCGGCGAAGGCGTCCGTCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004129_6

>merge|NC_004129|6|4858355-4858492|CRISPRCasFinder
CCCGTAGGAGCCGGCTTGCCGGCGAAGGCGTCCGTCAGGTTGGCGCCTGGCTTGCAGGCCTCTTCGCTGGCAAGCCAGCTCCTACAACGCGTATCCCCACCCGTAGGAGCCGGCTTGCCGGCGAAGGCGCCCGTCAGG

>NC_004129|6|4|4858355-4858492|CRISPRCasFinder
CCCGTAGGAGCCGGCTTGCCGGCGAAGGCGTCCGTCAGG	TTGGCGCCTGGCTTGCAGGCCTCTTCGCTGGCAAGCCAGCTCCTACAACGCGTATCCCCA
CCCGTAGGAGCCGGCTTGCCGGCGAAGGCGCCCGTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004129.6\|WP_019095088.1\|4859476_4859833_-\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062465.1\|4876227_4876776_+\|RNA-polymerase-factor-sigma-70	unknown	unknown	gnl\|CDD\|180803
NC_004129.6\|WP_011062460.1\|4858555_4859368_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NC_004129.6\|WP_011062464.1\|4862825_4875854_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|235564
NC_004129.6\|WP_011062454.1\|4851179_4852592_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235892
NC_004129.6\|WP_011062452.1\|4849755_4850583_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_004129.6\|WP_011062451.1\|4848560_4849544_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223874
NC_004129.6\|WP_011062450.1\|4847660_4848560_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_004129.6\|WP_011062459.1\|4857574_4858342_+\|thiol:disulfide-interchange-protein-DsbG	unknown	unknown	gnl\|CDD\|183262
NC_004129.6\|WP_041774396.1\|4876809_4877169_-\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062455.1\|4852827_4854153_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NC_004129.6\|WP_011062462.1\|4860391_4861441_-\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062469.1\|4878965_4880756_+\|DUF1446-domain-containing-protein	unknown	unknown	gnl\|CDD\|377804
NC_004129.6\|WP_011062468.1\|4878155_4878779_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061
NC_004129.6\|WP_041774395.1\|4861560_4862598_-\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062453.1\|4850872_4851097_-\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|225790
NC_004129.6\|WP_011062467.1\|4877264_4878059_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|214497
NC_004129.6\|WP_011062458.1\|4856735_4857599_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_004129.6\|WP_011062457.1\|4854984_4856736_+\|protein-disulfide-reductase-DsbD	unknown	unknown	gnl\|CDD\|234717
NC_004129.6\|WP_011062456.1\|4854153_4854831_-\|response-regulator	unknown	unknown	gnl\|CDD\|182612

Protein	Function_ID	Function_description	E-value
NC_004129.6\|WP_011062465.1\|4876227_4876776_+\|RNA-polymerase-factor-sigma-70	gnl\|CDD\|180803	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated.	6.69022e-107
NC_004129.6\|WP_011062468.1\|4878155_4878779_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	5.97356e-22
NC_004129.6\|WP_011062460.1\|4858555_4859368_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	5.48391e-40
NC_004129.6\|WP_011062469.1\|4878965_4880756_+\|DUF1446-domain-containing-protein	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	6.95263e-171
NC_004129.6\|WP_011062454.1\|4851179_4852592_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235892	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional.	0
NC_004129.6\|WP_011062452.1\|4849755_4850583_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.8243e-11
NC_004129.6\|WP_011062451.1\|4848560_4849544_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|223874	COG0803, LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism].	2.21168e-15
NC_004129.6\|WP_011062450.1\|4847660_4848560_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.79934e-51
NC_004129.6\|WP_011062459.1\|4857574_4858342_+\|thiol:disulfide-interchange-protein-DsbG	gnl\|CDD\|183262	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional.	1.18023e-149
NC_004129.6\|WP_011062467.1\|4877264_4878059_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|214497	smart00062, PBPb, Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe.	5.60281e-11
NC_004129.6\|WP_011062455.1\|4852827_4854153_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	3.38013e-54
NC_004129.6\|WP_011062464.1\|4862825_4875854_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|235564	PRK05691, PRK05691, peptide synthase; Validated.	0
NC_004129.6\|WP_011062453.1\|4850872_4851097_-\|MbtH-family-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	2.42909e-33
NC_004129.6\|WP_011062458.1\|4856735_4857599_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.83681e-33
NC_004129.6\|WP_011062457.1\|4854984_4856736_+\|protein-disulfide-reductase-DsbD	gnl\|CDD\|234717	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional.	0
NC_004129.6\|WP_011062456.1\|4854153_4854831_-\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	4.87778e-77

>NC_004129.6|WP_011062459.1|4857574_4858342_+|thiol:disulfide-interchange-protein-DsbG
MPFIRHLLSLSLGAALLNAPLLQAEELPAPIRKIEEKGAKIIGSFDAPDGLKGYAAQYQNRGMTLYLTPDGKHVLLGNLYDADGKDLSAEPLQKLVYAPMAKEVWGNLEKSNWIADGKADAPRIVYLFSDPNCPYCNMFWEQARPWVKAGKVQLRHIMVGIIREDSPGKSAALLAAKDPQQALQDHEKAGKGSALKPLASIPAAVQAKLDANMKLMEELELSATPAIFYLDDKGELQQQQGAPAPGKLTQILGPK
>NC_004129.6|WP_011062458.1|4856735_4857599_+|TlpA-family-protein-disulfide-reductase
MLTFTIGTFAIALNHLLLISALALATLVGWRVAKRGGDNPESVLFSLFLLGMLAARVSFVLAYWKHYQHDLWMIIDLRDGGFLAWPGVIVMLLAALAWGWKRPALRRPLGAGVASGLAFWLLATLALTLYDQGTRLPEVALRNAAGETVQLTDYQGGPLVINLWATWCPPCRREMPVLERAQQQRPDLTFLFVNQAESMQSVSTFLATQDLNLNNVLFDGSGRLGKAVGSMALPTTLFYSADGRLLGSHLGELSEASLARALENFDGAHPTSVAPSRKLPCPSSATC
>NC_004129.6|WP_011062457.1|4854984_4856736_+|protein-disulfide-reductase-DsbD
MRRLFLLLFMLFTTLAHAGNNPFEVKPDFLPVGKAFVFTSERLPSGETQLFWQIADGYYLYQKRLKFDGVAPELQPTLPAGEDHSDEFFGQQTVYRQGLEVKLPAAASGKVKLGWQGCADAGLCYPPQTLEVDLGGAPAVAASNVATTSNGSAQDQLLANDLQHKSWGLGLLAFFGFGLLLAFAPCSLPMLPILAGMVVGSGASPRRGLALASSYVLCMALVYAGMGVIAALLGSNLQAWLQQPWVLGSFAALFVLLSLPMFGFFELQMPALLRDRLEGASRQRQGGSLIGCGILGALSALLVGPCMTAPLAGGLLYIAQTGNALFGGLALFALGLGIGLPLLLLVTLGNRFLPKPGPWMNLLKGVFGILFLGTAIYMLRPVLNPGLWMGLWGALALVVAYCAWQQRAIAGRLLHLFGAGALLFAAWGGMLLVGAAGGGDDLWRPLKVYRGGPVANSVTAHDAFTTVKSPAELQGALDSARAQGQWVLLDYYADWCVSCKIMEKTVFGQPQVLEALKDVRLLRLDVTLDNADGRELLSRYKVPGPPSMLWIGPDGSERRSQRITGEVDANAFLQRWTQTREAR
>NC_004129.6|WP_011062456.1|4854153_4854831_-|response-regulator
MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPDEDGLKLLKQQRQQGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAGRSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQALLHNRGRVLSSEQLKDSVYGFNDELESNALNVHIHHLRRKLGNGIVETVRGLGYRLGPADGEENR
>NC_004129.6|WP_011062455.1|4852827_4854153_-|two-component-sensor-histidine-kinase
MRSLRLRLSMTLGAAFILIWALAAAWMLSDLRNQMMFSLDQRLVASARMVAGLLEQMPALPSHGPSNQINSAALTIPGGMACQVSSLRGQILARSHSTPEHPLEAEKLGFHDQMIDGAPWRTFTLVRGDMRITTADRQVEREALNMSVLLAASVPVGVALLGCLWLLWLGIGQSLAPLNRIRDALMRRSADSLEPLQIQPMPSELRPLLETQNQLFQRIAKTIERERRLTGDAAHELRSPLTAIKTHLQVARMTEGAARDQSLARAEEGADRMHRTLEQLLLLARVEGSLSFDDGVHCTAEQVARLAIQDAAVGARARVKLHMHGKAGEAAVEMPSTLAIAALRNLLDNALRHTPEECPVELNLETVGARVRFQVRDHGSGIPAQDLQHLTQRFWRDSQSSGCGLGLAIVQAIVQRCGCELNFDSRPDGLRVELTLPAHRA
>NC_004129.6|WP_011062454.1|4851179_4852592_-|aspartate-aminotransferase-family-protein
MSAVTSLMEDSPVGLGAAPQETLYQFDESPLLARQSRQESNARSYPRRIPLALKRASGIHVEDVEGRRFIDCLAGAGTLALGHNHPVVIAAIQQVLADELPLLTLDLTTPVKDQFVQDLFGLLPEALAGEARIQFCGPTGTDAVEAALKLTRTATGRSTVLSFQGGYHGMSQGALSLMGSLGPKRALAGLLNNGVQFLPFPYDYRCPFGLGGAEGVKVNLHYLENLLTDPEAGVALPAAVIVEAVQGEGGVIPADLEWLQGVRRITEKAGVALIVDEIQSGFGRTGKMFAFEHAGIIPDVVVMSKAIGGSLPLAVMVYRDWLDTWQPGAHAGTFRGNQMAMATGSAVMRYLKEHRVPEHAAAMGERLREHLLILQRDFPQLGDIRGRGLMLGVELVDPAGVPDAQGHPPQHARLAPLVQRECLKRGLILELGGRHGAVVRFLPPLVITAAQIDQVAQIFSKAVAAAVASL
>NC_004129.6|WP_011062453.1|4850872_4851097_-|MbtH-family-protein
MTSVFDREDILFQVVVNHEEQYSIWPDYKAVPQGWRTVGKSGFKKDCLAYIEEVWTDMRPLSLRQKMDQQAVAG
>NC_004129.6|WP_011062452.1|4849755_4850583_+|class-I-SAM-dependent-methyltransferase
MSDYVKLNKTNWDERAPLHAASADYAVQRFVDEAGYLSDVVQFDRPLLGDIRGLRGVHLQCHIGTDTLSLARLGAQMSGVDFSPASLAEARTLARRCNTPIDYHESDVFLAAEVLPQGNFDLVYTGIGALCWLPSIERWAQTVGALLKPGGRLFIREGHPMLWAINEDHDDSLRVELPYFETREPLVWDDENTYVETDSPLKATMTHEWNHGLGEIISALLAQGLDITGLVEHQSIPWEALPGQMVVDERGEWRLKEAPWRLPLSYTLQAVKRGG
>NC_004129.6|WP_011062451.1|4848560_4849544_+|zinc-ABC-transporter-substrate-binding-protein
MHSSLPHLSLRRLTLALALGGLISTPALAERDHFEPMRVVANHGMGNTALHSATSSKSPTVLASLPVTFGLGQILLQGTDIKLERAAPANLPGSRQTAYFTGRGAPALAKLALNADAVIGLRSIWPDDPLYPNARRSNIRIVEIDAARPVDGALPGVALQPGKSDGLNAQPWLSSNNLGRMADVLAADLARLAPEAKPQIESNLAGLKQRLLKLSADSEARLAEADNLSVLSLSEHFGYLVSGLNLELLEVDARADNEWTPEALKKLQARLKDNDVALVLHHRQPSDALKAAISAGGSQLLVLETDSADPLAELEGNLQKVTQALSL
>NC_004129.6|WP_011062450.1|4847660_4848560_+|metal-ABC-transporter-permease
MTYEAFRLMVQGWASAGYLPEALAYGFVVNALLAGLLIGPVLGGLGTLVVVKRFAFFSEAVGHAALTGVAIGILLGEPYTGPYGSLFGYCLLFGILLNYLRNRTGLAPDTLIGVFLSVSLALGASLLLILAGKINVHILENVLFGSVLTVNGNDLLVLLIVGALVLGLSLPLYNRIMLASFNPQLAAVRGVAVKTLDYLFVILVTLITVAAVKVIGAILVGALLVIPAAAARLLSQSLKGFFWISVSIATVSTLCGILLPIVFDLPVPSGAAIILVAGVAFALAAIARGTVPSLKGNIG
>NC_004129.6|WP_011062460.1|4858555_4859368_-|alpha/beta-fold-hydrolase
MPFATIDGQPLHYLDQGQGPVVFLAGSYLWDTGMWAPQIEALSAQYRVIAVDLWGHGQSGALPEGTASLDDVARQMLALLDHLQIERVTLVGLSVGGMWGARLALAAPQRIDGLVLMDTYLGAEPAPTRQYYFSLFQQIEDSGLIAEPLLDIVVPIFFRPGIDRQSALFQDFRASLAALPAERLRQSVIPMGRITFSRADVLDQLQHLDGPNTLLLCGDQDKPRPPAETLEMAERIGCPYQLVPDAGHISSRENPEFVTRALLAFLQRNG
>NC_004129.6|WP_019095088.1|4859476_4859833_-|hypothetical-protein
MKKLVPDPPSSYRDPALKAANATLRVALARQPLDPALFQLTTQAKPVSPDSLFSVREGVSAEEALVHVALLLKCAEEVCDEITQQGSGLERGLIWSMVHSVEMARAVVEALLDGQRGP
>NC_004129.6|WP_011062462.1|4860391_4861441_-|hypothetical-protein
MEQIFWRDIEDLAGHWNGLGVDVKRPASGKPNLCLLSGNNSRMQLVLGDQTLLWGTMSRCLYGVWLVRNHLPEQLPQTLVGPIDSPQVEQQARLDPALRLKAWSRFFVEQLMQHQPDFFYPGYWLVRALRPASQKPMRPLLSGTEAWYFKGGEDALSHMPQWAIYGRNILDNQQAGTARWVGLGEYGGAVVGLHAVDPHSGRLKWWRKKAREGSLPPILLWYVTGLSCYLILDGHYRLQAAIDENLPPEFLVLSSPRLYRYRPNPQEQQKVLGALQVQIQRKKLDTGRFNQLLISTFDDRPYHGFGSQSWAGIASEQVWIDQVSGILKERGDLSDLEEILEREAPEEYR
>NC_004129.6|WP_041774395.1|4861560_4862598_-|hypothetical-protein
MAEQLYWRDIEDSLGNWSGLGVEVEPGPTNRPPLYLRTGANARIKLMHHDTPLFWATLARDHCGVWLVRNPLADGAECRLLAPIDSPTVEQHAALAPELRIKAWSRYFVSRLSESARHFLTPGFWLAQGLLPEPSSTASGLDHWRFTSVIDPLTHVPNWHLYGEDFLDNLQPQTLEWIDWWHGGGKLIGLHRVDLEAGRLKWWRKKAREGSLPPILLWYVGGLASYVVIDGHYRLQAAIAENLAPSFIVLSATRERGFAPSLEHQQRVMDSLRKRGDAVPRNPALSTENLNRVLIQAFDDRPQYRSATPAWAGNEPESQWCDEVRQCLGGQGLADEVDAVIGRHG
>NC_004129.6|WP_011062464.1|4862825_4875854_-|non-ribosomal-peptide-synthetase
MTDAFELPSTLAQALQRRAVLAPDQVALRFLAEEQDQSVVLSYLDLDLRARTIAAALQANAEFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESTRRHHQERLISIMADAEPRLLLTSAGLRDSLLQMDELKAPGAPQLLCVDTLQAGLAEDWQAVALQGDDIAFLQYTSGSTALPKGVQVSHGNLVANELLIRRGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLARPVRWLEAISEYGGTISGGPDFAYRLCSERVSESALERLDLSGWRVAYSGSEPIRLDTLERFAEKFSACGFSHENFLASYGLAEATLFVAGGVRGQGIPALHLDDQALAQNRAEPGQGSAMMSCGFSQPEHAVLVMDPQQLGELPDNRIGEVWAAGPSIAHGYWRNPEATAKTFVQHAGRTWLRTGDLGFIRDGELFITGRLKDLLIVRGHNLYPQDIEKTIEREVEVVRKGRVAAFAVTEQGQEGIGIAAEISRSVQKILPPEALIKAIRQAVAEACQEAPSVVVLLNPGALPKTSSGKLQRSACRTRLADGSLDYYALFPQAGSEPARVGEGSGDELQNLIGRIWQEQLQCASVAADDHFFLLGGNSIAATQVIARLREELGLELGLRLLFEAPTLGAFSAAVARQQQDGGVAQGSINALSRQQPLPQSLAQNRLWITWQLDPQSSAYNIPGGLRLRGELDEEALRASFQQLIQRHEALRTRFFERDGQALQQVDAAGEFNLQVIDISDLPPAEREARARQIREDEARTQFDLEKGPLYWATLVRLDDEEHQLLLTLHHIIADGWSLNVLIDEFSRLYAAAAQGQSLELAPLALQYADYGSWQRQWLAQGEGQRQLDYWKQQLADEAPVLNLATDHPRSAQVRHSAARHDLRLSASLSEAVRQTAQARQATPFMLLLAAFQTLLHRYSGQGDIRIGVPNANRPRLETQGLLGFFINTQVLRGQLDSRQSFADLLQQTRRTALEAQAHQDLPFEQLLEAFPEAREQGLFQVMFNHQQRDLSALRRLPGLLAEELPWHSREAKFDLQLHSEEDRNGRLSLAFDYADELFDAASIERLAGHFISLLEHACLQPDCALGDLPLLGNAEAAQLQQWSVAPCAPAEQWLPERLHEQLRQSPERTALVWDGGQLGFAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLIGLLAIIKAGGAYVPLDPDYPAERLAYMLGDSGVQLLLTQTHLLGRMPEAPGVSAIAMDSLKLDSWPSHAPGLHLHGEHLAYVIYTSGSTGQPKGVGNTHRALMERLQWMQDSYQLQADDVLMQKAPISFDVSVWECFWPLITGCRLLIAAPGEHRDPHRIAQLVQEYGVTTLHFVPPLLQLFVDEPLSAECHSLRRVFSGGEALPAELRNRLLQQLPNAQLHNRYGPTETAINVTHWQCSVDDGERSPIGRPLGNVLCRVLDAELNLMPAGVPGELCISGQGLARGYLGRPALTAERFVVDPLSEEGARLYRTGDRVRWCADGVLEYLGRLDQQVKLRGFRVEPQEIEARLLAQDGVAQAAVLVRDTVAGPQLIGYYTAQASDEDETEQSARLKTALAAELPEYMVPAQLLRLDAMPLSPSGKLDRRALPEPQWLVREHVEPSTELEQQIAAIWREVLGQPRIGLKDDFFALGGHSLLATQIISRTRQACDVELPLRALFEASELGAFAEQVLLIQQSGARNQQPPIARVDRSQPVPLSYSQQRMWFLWQMEPDSPAYNVGGMARLSGVLDVGRFEAALQALILRHETLRTTFPSVNGVAHQQVHADTGLRMAWKDFSALAPDARQQRLQQLADSEAHQPFDLETGPLLRACLVKAGEQEHYFVLTLHHIVTEGWAMDIFARELGALYEAFLDDRESPLEPLPVQYLDYSVWQRQWLESGERQRQLDYWTGQLGREHPLLELPSDRPRPAVQSHQGELYRFDLSDELAARVRAFNAEHGLTLFMTMTAALSLLLYRYSGQSDLRIGAPVANRIRPESEGLIGAFLNTQVLRCQLDGQMSVSQLLEQVRHTVIEGQSHQDLPFDHLVEALQPPRSTAYNPLFQVMCNVQRWEFQQSRQLAGMTVEYLVNDARATKFDLNLEVTDLDQRLGCCLTYSTDLFDEPRIARMAAHWRNLLEALLSDPQQRLCELPLLHAEEQQQLLDSLSVEPGEQRLDQCIHHLFSEQALARKDAPALTFAGQTLSYSELDSRANRLAWMLRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLDRLHYMIEDSGIGLLLSDARMFAALGELPISVGRWCLEEDGALLADYPAGELPFISLPQHQAYLIYTSGSTGQPKGVVVSHGEIAMHCQAVIRRFGMRADDCELHFYSINFDAATERLLVPLLSGAQVVLRAQGQWDAEEICQLIRQHRISILGFTPSYGSQLAQHLATQQQTLPVRMCITGGEALTGEHLQRIRAAFQPSLFFNAYGPTETVVMPLASLAPEQLADGVASVPIGRIVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHRRPGMSAERFVADPFATDGGRLYRTGDLVRQCADGQVEYIGRVDHQVKIRGFRIELGEIETRLLDHPAVREAVVLALDTPAGKQLAGYLVTEVAEHNDVQQANLREALKQQLKTQLPDYMVPTHLILLASMPLTANGKLDRRALPLPDPELNRQQYVAPSNELEQTLAGVWGEVLNVQQVGLNDNFFELGGDSILSIQVVSRARQLGIHFTPRDLFQHQTVQTLARVASHTQRVSAEQGQLSGEASLTPIQHWFFDSRIPQPQHWNQALLLEPLGTLDGSLLEQALLAVLEQHDALRLRFSQAGGQAGGQWRAEYLPLSDAPLLWQVRVPSMATCEALFADAQRSLDLEHGPLLRAVLVDGPEGEQRLLLTIHHLVVDGVSWRVLLEDLQNAYRQLQAGQALKLPAKTSALRDWSSRLQAYAGSESLREELGWWQQQLAGPAAQLPGLKATGSQQHQQAQSHSVTLDAERTRQLLQQAPAAYRTQVNDLLLTALARVLCRWSGQPSALVQLEGHGREALFDEIDLTRTVGWFTSAYPLRLTPLQVEEAAGQGASIKAIKEQLRAVPHKGLGYGVLRYLADESCREALAALPLAPVTFNYLGQFDQSFGTDALLRPLDESVGPAHAPEAPLPNELSIDSQVYGGELVLRWTYSSERFDAELISELASAYLGELQSLIGHCLKDDAGGLTPSDFPLARLTQAQLDGLPVPAAQIEDVYPLTPMQEGMLLHTLLEPGTGLYYMQDRYRINSELDPERFAQAWQAVVARHEALRASFCWNVGEDMLQVIHKPGRTPIEFLDWSAVPEAEQEAKLQALHKQEREAGFDLLNQAPFHLRLIRVGAARYWFMMSNHHILIDAWCRSLLMNDFFEIYTALGEGREAQLAVPPRYRDYIGWLQHQSLSEARQWWRQNLEGFERTTPIPSDRPFLREHAGDSGGMIVGDCYTRLDARDGAQLRELAQQHQLTVNTFAQAAWALVLRRMSGDRDVLFGVTVAGRPVEMPEMQRTVGLFINSIALRVKLPQDGERCSVRQWLSGLLDSNMQLREYEYLPLVAIQETSELPKGQPLFDSLFVFENAPVEVSVLDRAQSLNASSDSGRTHTNFPITAVCYPGDDLGLHLSYDQRYFEQATIERMLGEFKRLLLALMQGFHGDMAELPLLGEEEQDFLLAGCNQSEHEYPLERSYVELFEAQVAAHPQRIAASCLDQRYSYAELNRCSNRLGHALVANGVGFDQPVALLAERGLELLGMIIGSFKAGAGYLPLDPGLPGQRLGRIIELSRTPILVCTAACREQAQALLDEFGCAGRPRLLVWEELQAAGHAEHNPGRYSAPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLHLSEADVIAQTASQSFDISVWQFLAAPLFGARVDIVPNTIAHDPQGLLAHVEEQGITVLESVPSLIQGMLAQDAIALDGLRWMLPTGEAMPPELAHQWLLRYPQVGLVNAYGPAECSDDVAFFRVDMASTRGAYLPIGTPTDNNQLYLMDEALELVPLGAVGELCVAGTGVGRGYVSDPLRTALAFVPHPFGAAGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQPELRDAAVGVQEGVNGKHLVGYLVASDTNLSPSECLERIKPRLRAELPEYMVPLHWLWLAHLPLNANGKLDRKALPALEIGQLQSQDYLAPGNELEQTLADIWAEVLKVERVGVRDNFFELGGHSLLATQIASRVQKTLQRNVPLRAMFECSTVQELAAYIDGLGANEISEEKVDRLSDLMAELEGL
>NC_004129.6|WP_011062465.1|4876227_4876776_+|RNA-polymerase-factor-sigma-70
MTEQVSTSRCDSPLLQAFVDNRLILVKIAARITGCRSRAEDVVQDAFFRLQSAPQITSSFKAQLSYLFQIVRNLAIDHYRKQALEQKYSGTEEEGLNVVIHGASPETSHMNFSTLENIAEALTELPSRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVSGNRPDTFARR
>NC_004129.6|WP_041774396.1|4876809_4877169_-|hypothetical-protein
MSPVDPLNVAALPTSQLTGIDEVIARQRLFESLRGRGQAPVPVDAQAAEAARQDRLAFWLSAQVHALYLDPPGAQRPAPGAHAPPCAAHDRCRFCQQEFDLLHKRAALLVLGRSGLLEV
>NC_004129.6|WP_011062467.1|4877264_4878059_-|transporter-substrate-binding-domain-containing-protein
MSLPLRSALRMLLLALATLWVCPASSAQLVRVAAAHFPPYTVRPETGADTGLLPQLVEALNQSQSDYQFVLVPTSIPRRFRDFEQGRVDLAIFENPAWGWQNITHTSVDMGLEDAEIFVAQRQGGRQQDYFANLKGKRLALFSGYHYAFAQFNADPKFLADTYNATLTYSHDSNLLMVLRGRADIALVTRSYLSDFLARNAESTEQLLVSERIDQVYHHYALIRPKAPITAEDFSGLLQKLRDNGQMHKIFDPYRIVVMSVPHA
>NC_004129.6|WP_011062468.1|4878155_4878779_-|TetR-family-transcriptional-regulator
MDEQKAQQVVRELIASGQVTDPESARGKLLQTAAHLFRNKGYERTTVRDLASAVGIQSGSIFHHFKSKDDILRAVMQETIHYNTALMRAELAEAGSVRERVLALIRCELQSIMGGSGEAMAVLVYEWRSLSPEGQAAVLALRDIYEQIWLQVLGEAKEAGFIKGDVFITRRFLTGALSWTTTWFRAEGSMTLEQLAQEALLLVLKDH
>NC_004129.6|WP_011062469.1|4878965_4880756_+|DUF1446-domain-containing-protein
MTKTVRIGCASAFWGDTSSAAAQLVQGGRLDYLVFDYLAEITLSIMAGARMKDPTAGYATDFVEVLKPLLGSIREQGIRVISNAGGVNPQACASALQAACEQAGVALKIAVLLGDDLQPQFKQLSDAAIVEMFSGAPLPPMCVSTNAYLGAPGIVEALRLGADIVITGRGVDSAVVSAALVHEFNWSWQDYDRLAQAALSGHIIECGAQCTGGNFTDWRQVPDYEHIGFPIVEVGADGQFVVGKAPGTGGLVSPLTVGEQLLYEIGNPRTYLLPDVVCDFSQVELRQQGPERVHVQGARGLPPSHQYKVSATYPDGFRCTASCLMAGIDAVAKAHRVSQAIIDKTSEMFAQRGWGPYSEVNIELLGSEATYGPHGQRQDSREVVIKLAVRHPNKAALVLFSREIAQAATGMAPGLTGIVGGRPTVYPVIRLFSFLLDKDACRLEIDLAGQRHPCALPHTDRLDPAALPAPHSLPAPRGRADASVALVKLAVARSGDKGNHSNIGVMARHPDYLPWIAEALTPEVLVDWMGHVLDPVHGRVQRWYLPGTHSLNFLLENALGGGGVASLRIDPQGKAFAQQLLEIQIPVPQSIADAVN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_004129_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004129_7

5389161-5389329

Orphan

Consensus_repeat	Method
AGTTCGGATTCCGAACTCAGTGAAAAC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_004129_7

>merge|NC_004129|7|5389161-5389329|CRISPRCasFinder
AGTTCGGAATCCGAACTCAGTCTGATATTGCCGCGTCTGGTCTGAGTTCGGATTCCGAACTCAGTGAAAACTCAGGAAAACAGACCGCTCTACCCCTCAGTTCGGATTCCGAACTCAGTGGAAAACAGCCGAGTTCGGACTCAGTTCGGAATCCGAACTCATATAGTAC

>NC_004129|7|5|5389161-5389329|CRISPRCasFinder
AGTTCGGAATCCGAACTCAGTCTGATA	TTGCCGCGTCTGGTCTG
AGTTCGGATTCCGAACTCAGTGAAAAC	TCAGGAAAACAGACCGCTCTACCCCTC
AGTTCGGATTCCGAACTCAGTGGAAAA	CAGCCGAGTTCGGACTC
AGTTCGGAATCCGAACTCATATAGTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_004129.6\|WP_011062919.1\|5387861_5388488_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NC_004129.6\|WP_011062921.1\|5390320_5391052_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NC_004129.6\|WP_011062910.1\|5379489_5380242_+\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062915.1\|5384058_5384577_+\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062914.1\|5382534_5383884_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_004129.6\|WP_138641109.1\|5399002_5399530_+\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_041774417.1\|5385818_5386145_+\|Arc-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|367702
NC_004129.6\|WP_050783813.1\|5382265_5382538_+\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_041774420.1\|5396968_5398936_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350180
NC_004129.6\|WP_041774418.1\|5392793_5392991_+\|CrpP-family-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062912.1\|5381180_5381870_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NC_004129.6\|WP_011062918.1\|5386146_5387820_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|213858
NC_004129.6\|WP_158304879.1\|5395460_5396972_+\|PcfJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|379539
NC_004129.6\|WP_011062924.1\|5393085_5395002_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223624
NC_004129.6\|WP_011062916.1\|5384799_5385801_+\|nucleoid-associated-protein-YejK	unknown	unknown	gnl\|CDD\|178993
NC_004129.6\|WP_011062922.1\|5391048_5391594_+\|DUF3158-family-protein	unknown	unknown	gnl\|CDD\|314329
NC_004129.6\|WP_011062911.1\|5380238_5380622_+\|hypothetical-protein	unknown	unknown	unknown
NC_004129.6\|WP_011062927.1\|5399716_5400862_+\|TcpQ-domain-containing-protein	unknown	unknown	gnl\|CDD\|163460
NC_004129.6\|WP_011062923.1\|5391608_5392115_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|169261
NC_004129.6\|WP_011062928.1\|5400858_5402700_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177

Protein	Function_ID	Function_description	E-value
NC_004129.6\|WP_011062919.1\|5387861_5388488_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	9.85681e-60
NC_004129.6\|WP_011062921.1\|5390320_5391052_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	6.77529e-116
NC_004129.6\|WP_011062914.1\|5382534_5383884_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_004129.6\|WP_041774417.1\|5385818_5386145_+\|Arc-family-DNA-binding-protein	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	1.44369e-12
NC_004129.6\|WP_011062918.1\|5386146_5387820_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	1.22916e-156
NC_004129.6\|WP_041774420.1\|5396968_5398936_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350180	cd18793, SF2_C_SNF, C-terminal helicase domain of the SNF family helicases. The Sucrose Non-Fermenting (SNF) family includes chromatin-remodeling factors, such as CHD proteins and SMARCA proteins, recombination proteins Rad54, and many others. They are DEAD-like helicases belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.96593e-38
NC_004129.6\|WP_011062924.1\|5393085_5395002_+\|type-I-DNA-topoisomerase	gnl\|CDD\|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	8.39779e-153
NC_004129.6\|WP_011062912.1\|5381180_5381870_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	2.4687e-09
NC_004129.6\|WP_158304879.1\|5395460_5396972_+\|PcfJ-domain-containing-protein	gnl\|CDD\|379539	pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family includes the E. faecalis PcfJ protein, which is functionally uncharacterized. It is found in bacteria and viruses, and is typically between 159 and 170 amino acids in length. There is a conserved HCV sequence motif.	1.88587e-09
NC_004129.6\|WP_011062927.1\|5399716_5400862_+\|TcpQ-domain-containing-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	1.96343e-55
NC_004129.6\|WP_011062916.1\|5384799_5385801_+\|nucleoid-associated-protein-YejK	gnl\|CDD\|178993	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated.	0
NC_004129.6\|WP_011062922.1\|5391048_5391594_+\|DUF3158-family-protein	gnl\|CDD\|314329	pfam11358, DUF3158, Protein of unknown function (DUF3158). Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.	6.61135e-83
NC_004129.6\|WP_011062923.1\|5391608_5392115_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|169261	PRK08182, PRK08182, single-stranded DNA-binding protein; Provisional.	9.58366e-75
NC_004129.6\|WP_011062928.1\|5400858_5402700_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0

>NC_004129.6|WP_011062919.1|5387861_5388488_+|DUF2857-domain-containing-protein
MTKSTINEAVLSQLLDLVRNGQLQRCREMGLEPEVLGQIQHPTVLSLLRNTPVTWVNVSINSSMIQKLLSNAARTEEEARVIERAIRLGATTKLLKNFFGLSPQEIALQRAVIGVKAPHGRWPAVSEDQEHQIWYRWTNLMKQNQVSLEDSLAMLDIAMLVAEELIADGLTLAQIWSFITHWIENRIYPGNNHRDRQARRLEQGEHTQ
>NC_004129.6|WP_011062918.1|5386146_5387820_+|ParB-N-terminal-domain-containing-protein
MTDLKARLLAPGFSPSAATTVLSDPLADTPIVATIDEVLPWEDNPRTTRNPKYDEIKESIRNRGLDTPPPVTRRPGEEKYRIRNGGNTRISILKELYQETGDEQYYRINLLFKPWDQARGEIVMLTGHLAEDLKGELKFIERAVGVGRAKALYESETGESIGVRELARRLTKDGYPISHSHISRMLDTIQHLLPCVPNLLYSGLGYDRITKILALRKTSSLCWNKHYIGVGVDFEMLFQDVLAQFDGEVEEFLYQRFQDELIGTMKKSLPLGYEDILLEITQEQDQLRRSTPVVQLPTNNHVPAAVPLQSAPSEKPAPSPQGSTAPGNNQPSRPNTSQSSSGPNEPSPSPEEMQARIDGHIASPVTQTARVIEMKKKLAAIEGEQLPDFNSNCLQSIPVQAGGLNPISDLWYIEREIDSSEQLRKHIAQLALEIQESVNAPGQIIEIPAGIGYSYRQPTEESEDTATAVHTMTLLQSLSGAVAIALQMIRESPDADLSSLKDFEFAAGLGQLLIGQPSTKDLEPNDQGRISDGALVKLFRIIRLARRLIDIEIKQSA
>NC_004129.6|WP_041774417.1|5385818_5386145_+|Arc-family-DNA-binding-protein
MDQTTSRTADKFVVRLPDGMRDRIAQVARDNTRSMNSEIINRLEQSLLVSQVDAANPLKADLERAYRIIDRLLQVASPSTEDVQEILELFKCGTPRASFPAMNSSAGV
>NC_004129.6|WP_011062916.1|5384799_5385801_+|nucleoid-associated-protein-YejK
MPIRHLIIHHIDKQPDGTPAALHSRDSELAESAVLENMLVDLNESYNAKQGKAWGLFHPESGAFPLSGWLKEFFNGELDFTAFSHKAVDHLQKLMEESNLSVGGHVMFAHYQQGMIDYLAIALLHHSEGVAVTDQLDVTPSRHLDLGQLQLAARINVSEWQNNKQSKQYISFIKGKNGRKSTEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEDSAREKTKALVDYASSQAKLGEPVGLEELSELIDEDRPKAFYEHIRNKDYGLSPEFPTDKRTLNQFRRFTGRAEGLSITFEAHLLDTNVIYDADSGALTIKNLPTQLVDQLKRR
>NC_004129.6|WP_011062915.1|5384058_5384577_+|hypothetical-protein
MRSSTSYFPKIHADAEFNQSALVHAHRAGVNAVELDLLSQAVTRLVRDHSTIVPGAMSDNFAEMENLGYVRLTPTTSGTLDVDLLCPGPLLSNYFWSVWVPRHLFECSMKVTVLPRLDDDAITQYCTVAFRIPGDKEAARFFLMDLGSKYPGHDPEIIAIQAGNQLRTELHE
>NC_004129.6|WP_011062914.1|5382534_5383884_+|replicative-DNA-helicase
MNPLDFTPPHSTEAEQGVLGGLMLDNNTWDLIADLLVPEDFFKREHRLIFQAIASLADKDHPFDIVTVSESMSQPEEVGGLAYLGDLARNTPSVANIERYAEIVRNRSHLRSLMSLGYQCSRDAAESTAVATDVQESIEQQLFALAQNRTRSDFVDVNQALGAVINKIDEHFNGNVTVTGVSSGIDDLDEMTSGFQPTDLIILAGRPSMGKTALALKFVHAALRQCSDNESVQVYSIEMPAQALLFRLISSIGHVDLTKLLKGKLEDEDWPKLTNAVHQLNGFGDRLVIDDGSSLTPAALRAKARRASRRFGKPKLILIDYLQLMSAVGEENRNNEISVISRSLKALGKEMDCPVIALSQLNRSVEGRPNKRPVNADLRESGAIEQDADVIMFVYRDEYYHPESEHKGIAEIIIGKQRQGPVGFARAAFIPQQTRFENLAPASWQGGGA
>NC_004129.6|WP_050783813.1|5382265_5382538_+|hypothetical-protein
MFAHPDLPNFEEDPDKSRLWLQEQGLEICSVGLETDAPEEIADRYFRSDSPDCSYWEPSMPEGEGWFCLAIHDTEDGGPYCFWARREVTP
>NC_004129.6|WP_011062912.1|5381180_5381870_+|DUF2786-domain-containing-protein
MEKQKVLDKVSKLLALANDCGASPNEAETALRQARHLMKQYNLESLEVAAHAVEEVCVPTRTARPPKDWLHRLAATCARAFDCEHLAFHSGLVGWSIKFMGIGIGPELAAYAYSALHHQLVMQRKAHVALQKRCQLKTKRRRGELFVDGWLSAISYKVAQFAGADAEPRDEIKAYISLHHPTLEYMDLDRPEAKGHDIRSRQAGWQQGKQANLARGLSHKERASIGGGR
>NC_004129.6|WP_011062911.1|5380238_5380622_+|hypothetical-protein
MSRSYVSKNALPVTARMLRGRLNTIIRQDEALTHQQLRLSLDGMSYPVTNANLQISDDGVIELEIYQPNAAVAAIAYALANPCESPLDFLRCWNSGDFEAIRQEWDDVPEEVFLGADPLHKVMEDRS
>NC_004129.6|WP_011062910.1|5379489_5380242_+|hypothetical-protein
MTKSPITQPTGITPEFLQNLNSRYSSTELRSVQTKLTSTAREVRKLGSGGPMGSGLSGRISEQLSYEQRQLLLDAATLIESVNSHIEHAKEKRVRDEKATKRRQEARRAQAKQLIARAFPLPHDTLEQQLDSLKIALTFNRAGVYHGFYSPSEHNLKWRGYLEVAQTKRISSWPSPQAYMLSHITSARLDLISELIDEIAYDDGSEVEERLKALKQKIADRLSQTPLTTEEEQTLQLWKSALTLNAWGEV
>NC_004129.6|WP_011062921.1|5390320_5391052_+|TIGR03761-family-integrating-conjugative-element-protein
MADNFQLNIGSLRSQVQLTLHTHHAARIWLGRQQSESKNSILGLAGFCSRVNQMDRGASQDDPFSDWWIIRIEDKIAESDAALTEIDKRLDDVMAQLPAMIDIGTNLSTHPMKLPLFISNPLGFKSVYLLTKYDEIVRRILLAKHVGLIGRRDGEVWIDDGAHILRSLFGLAQQYRFSGASRDDFAANNARAEQARQMYQRAGEIPQNILEGTRRSSFAPEIRRGQPTLSERLEAEPFDEGEE
>NC_004129.6|WP_011062922.1|5391048_5391594_+|DUF3158-family-protein
MTQSIGGRALGNLQQGAFKPLQQGAYQGLQQGASLKGLLKPFKGKGELDQLAEQCTALEAGLRALVHEVLAQVREHPFALLPVRLIEQNTSAGTTFLRWQSVQGRRMGVGVWAEMVHAPKTPVHLLQDLFALEQHRITLNMQISLIHFIGKQAAECAEKMGQAEAVYTARLQQLTNQPQRN
>NC_004129.6|WP_011062923.1|5391608_5392115_+|single-stranded-DNA-binding-protein
MGTPVVWEGNIGNPPEHKSFPNGNNEPRQLLRLNVMFDNSIPDGSGGYKDRGGFWANVEWWHPDAERFAQLFSKGMRVVVTGRAIMDTWKDKETGDDVWALKVEANRVAILPHRVNQVTMTQSNNTGQRQNAQQNNRPERQQNSAQQPGQHTDDLSHYGNGFDDDIPV
>NC_004129.6|WP_041774418.1|5392793_5392991_+|CrpP-family-protein
MTDQPARVKIDRRKFNNPHPTVEAAGAAAAQKGFPVHACPYKHPAMLSSWLKGYKRAQQLTFAFS
>NC_004129.6|WP_011062924.1|5393085_5395002_+|type-I-DNA-topoisomerase
MKLMIIEAPGKLKKLAPMLKKLRPGEHWEVVASGGHIRDLPEKGHDDTMIIAGVLKDLRPVYTIRDKSSGRIKTMREALARATEIYIATDPDREGESIAWHIQQTLRIRDYKRIAFNEVTHTRVKEALANPRKIDAQLVASQECRRVLDRLVGYLVTGELRRVLGLPTTAGRVQSVAVYLVVLREREIRDFKVVHHFGVRLQFQNQTTGSSWTADWVTVPDFTSKEHPYVQDGTLAAQVAGVRNVIVESCEDTKERRAPYPPYISSTLQQAASVALKWDPDKTMQIAQRLYEQGVITYHRTDNPNVGDDVMGDIRAVAQALGIPAVEKRREFRAAEGAQLGHPAIAPTTWADEVAGEDDEQRQLYKLIRIRALASQLADAIYDARIVKLLAKGPDQRPLRFSGSCRTVAYRGWMQLLAGDDTDEEGAEAANNEIPKLEPKQILPVLNGQVLNQKTKAPPRYTKASLVKELERQGIGRPGTFASIIKNITSRSQVIEEKRKLIPGPLGEQTIAQLEGRFSFVQTQFTSSMERALDKIADGQSTYNAVVSKFYEHLQRELSSLKDAPSLRMQSARTSASTTTGPEHQYLCGKCGKHLVRRQKRGEGGYDFWACSGYKDTGCKVSYPSVKEKPDLTKARGL
>NC_004129.6|WP_158304879.1|5395460_5396972_+|PcfJ-domain-containing-protein
MAVLTSFCRTARHLGQQLVREDLGETFAGVTLQSDEVRGTHRRYTQPRTNFYMKQIGSSIKAFCSHLDPAILFALRSARCPDPRVYNWLAAGDQTRRLQALKAQPVLLPLIVILSWSSDDLPLWPTQGELIYEAPPWPTVQELTPAQGTITPGAEANFIGAAADQGISVSDVLSWLFKTPKSSIRFLGTCRPGHIGGALSQLQREGRNAGWHQLLLGATAGNRRPRNRSDWKVFLVLIQQLPYEILFHVSKQKLNLNLLFKGCPTSWNDPTWPYVIAGIKDYTEIYRNLEYQRQDARKKVSDFFLRSNYAEIANKVELFHQDLPRIRVQIDNTLGVLEQADELFEWPPLLLSGPITCPNGIEIVELLCPNDLFEEELRMHHCVGSYDYSTYRGDCRIVSLRHNGNSIATAELRIDKKIKSSSKHPRVVCAQLRSHRNAPISTGTPAKTAFDWFLTQLNSGVITSNLSWPNLTRGMARYTRSSRQELLEEEVANWVDRHLVGRA
>NC_004129.6|WP_041774420.1|5396968_5398936_+|DEAD/DEAH-box-helicase
MSRPRMMNRQPVLIEKAVFDGYDFGIQMPFIEGANKVLLRRGGFFIRRGEHPLNRHWRIPKNKLNSELDLVFHELIELGQDRFTESWQSFQEKLEQAQASPQRDAFIWGMQLRIAPLAGRGVLLSGDYHPGVVAVARRMRGVFLGKSTSWRIDASAELVRSNLILELGLAEEQIGLLDIVQELLDDGSVAPAEGIPRISLGGPPQEAMEATSTEEVSNEIYLAAVSPIERTEYSAQAISKALEGYSLLDHQPAGIAHLLQRTSALLADDMGLGKTRQAVIAAHIRAAGLPILVVTLSSLLINWEREIHVVYPAATVAQQKFAPEAQWMIINYERLGDYVTVAERYAVMVIDEAHRLKEPTALWTRHGFDIAAKIPNRYLLTGTPILNRETELHTLLRLSGHSIGQLPLKDFCEQFSGSPEFRQNLRAQLGDWMLRRRKDVLPGLKSKQRQLLAIAMSDEERRQYDVIRLEDKPIFARLGALRFYLEQLKIRIAMDLLSELDPDDKVILFCEFKPTVAALKALCEEAGIGHVTLVGSDSPAKRQKAIDRFQQDPDCRVFICTTSAAGTGNNLTAANYVFFLGLPWTPGQQDQAEDRAYRNGQLRMVIVKIPLIEASIDQQLWELLLAKRQVSLELIEPEGQQEALAKTLLAASMGH
>NC_004129.6|WP_138641109.1|5399002_5399530_+|hypothetical-protein
MSKLVYLKILPLLILSIISPFLAVLSRGKLDLQVREIFNKLTFGEPSLLEHFLTGFFVPGAFILLYATANVFIKTKPIKIKPIIRSLAWQKLRKKIISLTRPTHIVHFAALAAIIYSFLCFAWEFDQFEKNGFFQYNQFAMDLLGGFVFCITLASILRTNSHSARARRSIVLGKF
>NC_004129.6|WP_011062927.1|5399716_5400862_+|TcpQ-domain-containing-protein
MIRQLTTLSLVALIAGCASQKAESPKPTSAFDSSRNPEWLSPDLYPNGAVPAKEPVVRYGRYTLVSTEPGSSQRDLMAQIIDVTIPSGMSPSIRDAMLYVVDRSGYTLCSPSTPHVNILYTRPLPAAQYKLGPMTLRNTLQVLAGPAWQVKVDEVNRQVCFVLRPGYQLPDPVASSAQLYAAKSPTTLPPAPPSADKASTVVVTAVPSASAITAVTPAGVQESSATTQTLSPVVPAKDGPTIHKAVPSVAPSSSAVPITSLASSSAEASKKAVPAVTTAPQKSPIPNPTPVPAKPLPEIWAASTGSTLRQSVEAWAQKANWTLLWEPEDLDYPIAAPLRFEGSFEEAIKQVFPLYDKAPRSFVVDGSAAQRLIHIAERKKK
>NC_004129.6|WP_011062928.1|5400858_5402700_+|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MTPLFRFRWAAVLVTLPLISSCAVQRVNDSASRAENEASTARQYNGYLQNQQPEPARDTVIFSEKPWVSTQPLVTKRGLPLNIDRDIAYRPASAVSLSEVAQFITRETGLPVVVAPDALNPSILSSRPGNSGAAAAPPAVTMSNPDNLAALMPTGLAGSLPSGARSLESELLSGTPGLISGIKFSGPVSALLNQVTSRLGLSWHYDPQLQGARITYFDTRTFDVWAFGDDQVIESVVKSGLITSTGSGSNGSGGTSSGTGASGDSGSNQSTTVQIKTSLLSDIENNVKAMLSTQPAGRIFLSRSTGTLTVSDRPEVLNRIASYLQSTNRNITRQVLFNVKIFEVNFTDRDQTAVNWKAVYKSVSGRWGLSLANKVAGISTDAISGSVSILDTSSSPWAGSSAVIQALSEQGRISDVRSPSITTLNLQPAPIQIGNVKSYVASSSTTTTASVGSSTSLTPATITSGFNMMLLPKIIDRDNMLLMISISMSSKPTFTTFTSNGSSVQTADFDTKNAAPKVLLRSGQTLVLTGFEENTENADKTGVGDASFFGLGGSRTRSSDHSALVVLVTPVVLPDDLGASAQGQPSSIPSLAQGINTFPSTSCRPPIRACNTL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1336767 : 1404897

Pseudomonas_phage(51.43%)

bacteriocin,plate,tail,protease,holin,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011059515.1\|1336767_1337583_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	2.3e-08	33.0
WP_011059516.1\|1337665_1338076_-	SufE family protein	NA	NA	NA	NA
WP_011059517.1\|1338072_1339278_-	aminotransferase class V-fold PLP-dependent enzyme	Q2XUY6	environmental_halophage	4.7e-71	36.1
WP_011059518.1\|1339354_1340389_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_011059519.1\|1340422_1340785_-	ArsC family reductase	NA	NA	NA	NA
WP_011059520.1\|1341022_1342669_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_011059521.1\|1342724_1343924_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_011059522.1\|1343962_1346665_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_011059523.1\|1346713_1347496_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_011059524.1\|1347903_1348641_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_011059525.1\|1348844_1349711_+	elongation factor Ts	NA	NA	NA	NA
WP_011059526.1\|1349920_1350664_+	UMP kinase	NA	NA	NA	NA
WP_011059527.1\|1350660_1351218_+	ribosome recycling factor	NA	NA	NA	NA
WP_011059528.1\|1351233_1351989_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	5.0e-18	38.1
WP_011059529.1\|1351988_1352795_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_011059530.1\|1352791_1353982_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_011059531.1\|1354031_1355384_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_011059532.1\|1355458_1357849_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_011059533.1\|1357894_1358398_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_011059534.1\|1358401_1359457_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_007924058.1\|1359566_1360007_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_011059535.1\|1360003_1360780_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_162865004.1\|1360779_1361907_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_015634336.1\|1361924_1362557_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	4.4e-28	40.0
WP_011059538.1\|1362626_1366148_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.9e-197	38.1
WP_011059539.1\|1366287_1367235_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_011059540.1\|1367368_1368685_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_011059541.1\|1368959_1370591_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.4e-158	53.6
WP_011059542.1\|1370596_1371442_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.9e-49	42.4
WP_011059543.1\|1371597_1372887_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-136	59.4
WP_011059544.1\|1373059_1373338_+	cell division protein FtsB	NA	NA	NA	NA
WP_011059545.1\|1373334_1374042_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011059546.1\|1374159_1375059_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011059547.1\|1375163_1376276_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.9e-29	27.4
WP_011059548.1\|1376362_1377208_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_011059549.1\|1377260_1377734_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011059550.1\|1377730_1378789_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_011059551.1\|1378776_1379526_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.6e-67	52.6
WP_169892832.1\|1379567_1380203_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	48.8
WP_011059553.1\|1380415_1381276_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.5e-06	33.3
WP_011059554.1\|1381382_1382390_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_011059555.1\|1382902_1383226_-	ferredoxin family protein	NA	NA	NA	NA
WP_011059556.1\|1383369_1385949_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.1e-28	24.2
WP_041774082.1\|1386135_1386882_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	3.0e-124	89.9
WP_011059558.1\|1387399_1387750_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	3.2e-52	89.6
WP_011059560.1\|1388215_1389352_+	glycosyl hydrolase	NA	NA	NA	NA
WP_011059561.1\|1389509_1390091_+	hypothetical protein	B5TK65	Pseudomonas_phage	6.4e-66	63.0
WP_011059562.1\|1390087_1390270_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.9e-22	86.7
WP_011059563.1\|1390269_1391766_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	5.0e-248	87.3
WP_011059564.1\|1391832_1392180_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	1.7e-53	86.1
WP_011059565.1\|1392176_1392473_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	3.6e-41	89.8
WP_011059566.1\|1392603_1394202_+\|tail	tail protein	B5TK70	Pseudomonas_phage	3.1e-62	61.6
WP_011059567.1\|1394191_1395436_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	8.9e-174	74.0
WP_011059568.1\|1395439_1396480_+	hypothetical protein	B5TK72	Pseudomonas_phage	2.0e-150	78.8
WP_011059569.1\|1396589_1397096_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.1e-73	85.7
WP_011059570.1\|1397098_1397497_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	4.7e-60	82.6
WP_011059571.1\|1397486_1398527_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	2.6e-158	82.7
WP_011059572.1\|1398514_1399114_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	4.0e-95	82.9
WP_011059573.1\|1399129_1400239_+\|tail	phage tail protein	A0A088FQW7	Escherichia_phage	3.6e-25	37.8
WP_138641101.1\|1400325_1400613_+	hypothetical protein	B5TK82	Pseudomonas_phage	4.5e-12	50.0
WP_011059575.1\|1400663_1401227_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	6.2e-82	78.9
WP_011059576.1\|1401334_1401850_+	hypothetical protein	A0A2H4JAC5	uncultured_Caudovirales_phage	5.0e-22	49.1
WP_080512171.1\|1401923_1402109_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	1.3e-12	89.5
WP_011059577.1\|1402117_1402960_+\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_011059578.1\|1403260_1403761_+	CinA family protein	B5TK85	Pseudomonas_phage	5.2e-72	84.3
WP_011059579.1\|1403844_1404897_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.0e-113	61.0

DBSCAN-SWA_2

2205948 : 2283362

uncultured_Caudovirales_phage(67.57%)

tail,head,capsid,integrase,portal,terminase,protease,tRNA,lysis,holin,plate

attL 2206875:2206893|attR 2248337:2248355

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011060294.1\|2205948_2206959_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
2206875:2206893	attL	NA	NA	NA	NA
WP_011060295.1\|2207059_2208202_+\|integrase	tyrosine-type recombinase/integrase	L7TP61	Pseudomonas_virus	2.4e-165	74.5
WP_041774123.1\|2208170_2208452_-	pyocin activator PrtN family protein	A0A2K8HN48	Pseudomonas_phage	7.2e-31	75.5
WP_011060296.1\|2208448_2208922_-	hypothetical protein	NA	NA	NA	NA
WP_171053484.1\|2208918_2209449_-	hypothetical protein	H2BD37	Pseudomonas_phage	1.4e-30	59.5
WP_011060297.1\|2209445_2211179_-	DNA cytosine methyltransferase	L7TH64	Pseudomonas_virus	2.0e-192	64.2
WP_050783807.1\|2211168_2211465_-	hypothetical protein	NA	NA	NA	NA
WP_011060299.1\|2211506_2211728_-	hypothetical protein	NA	NA	NA	NA
WP_011060300.1\|2211724_2212144_-	hypothetical protein	NA	NA	NA	NA
WP_011060301.1\|2212188_2212515_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_016966897.1\|2212507_2212687_-	hypothetical protein	NA	NA	NA	NA
WP_011060302.1\|2212673_2212958_-	phage antirepressor KilAC domain-containing protein	NA	NA	NA	NA
WP_011060303.1\|2212967_2213552_-	hypothetical protein	NA	NA	NA	NA
WP_080512207.1\|2213548_2213728_-	hypothetical protein	NA	NA	NA	NA
WP_011060305.1\|2213808_2214522_-	peptidase S24	A8CGC0	Salmonella_phage	4.1e-22	35.4
WP_080512177.1\|2214598_2214871_+	hypothetical protein	A0A0D4DBS7	Acinetobacter_phage	1.7e-08	41.6
WP_041774125.1\|2215219_2215738_+	hypothetical protein	NA	NA	NA	NA
WP_041774127.1\|2215730_2215955_+	TraR/DksA family transcriptional regulator	A0A218M4I6	Erwinia_phage	2.0e-07	40.6
WP_011060308.1\|2215947_2218167_+	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	9.0e-193	47.1
WP_041774129.1\|2218159_2218525_+	hypothetical protein	NA	NA	NA	NA
WP_011060310.1\|2219045_2219390_+\|holin	pyocin R2, holin family protein	B5TK61	Pseudomonas_phage	1.1e-46	80.9
WP_011060311.1\|2219595_2220168_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	6.5e-63	69.4
WP_041774131.1\|2220172_2222185_+\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	81.1
WP_011060313.1\|2222186_2222393_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	2.5e-25	85.3
WP_011060314.1\|2222392_2223874_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	9.8e-236	80.7
WP_011060315.1\|2223870_2225013_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	3.5e-140	70.0
WP_011060316.1\|2225009_2225354_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	5.7e-46	84.2
WP_011060317.1\|2225417_2226413_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	6.7e-164	84.3
WP_011060318.1\|2226415_2226730_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	6.2e-31	65.0
WP_011060319.1\|2226726_2227380_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	4.1e-69	62.7
WP_011060320.1\|2227372_2227885_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	9.1e-48	55.0
WP_011060321.1\|2227881_2228472_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.1e-56	74.3
WP_011060322.1\|2228536_2228737_+	hypothetical protein	NA	NA	NA	NA
WP_011060323.1\|2228741_2229068_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.3e-36	69.4
WP_011060324.1\|2229064_2229946_+\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	3.4e-95	62.1
WP_011060325.1\|2229947_2230553_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	4.2e-76	70.7
WP_011060326.1\|2230549_2231776_+\|tail	phage tail protein	A0A2H4JF09	uncultured_Caudovirales_phage	1.5e-77	72.1
WP_011060327.1\|2231775_2232558_+	hypothetical protein	NA	NA	NA	NA
WP_011060328.1\|2232703_2233870_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	6.0e-180	80.7
WP_011060329.1\|2233882_2234392_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	7.3e-66	72.5
WP_011060330.1\|2234403_2234709_+\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	6.6e-22	61.3
WP_011060332.1\|2234850_2237418_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.5e-74	33.4
WP_011060333.1\|2237426_2238272_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	7.3e-103	66.4
WP_011060334.1\|2238246_2238453_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.2e-21	70.1
WP_011060335.1\|2238449_2238920_-	hypothetical protein	NA	NA	NA	NA
WP_011060336.1\|2239000_2240044_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.1e-153	77.8
WP_011060337.1\|2240070_2240622_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	1.3e-68	73.2
WP_011060338.1\|2240618_2241140_+\|lysis	lysis protein	A0A2H4JBH9	uncultured_Caudovirales_phage	2.7e-31	51.5
WP_105625690.1\|2241372_2242950_+	hypothetical protein	NA	NA	NA	NA
WP_011060340.1\|2243015_2243699_-	SOS response-associated peptidase family protein	A0A2H4J991	uncultured_Caudovirales_phage	1.3e-105	76.9
WP_041774135.1\|2243796_2244222_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	3.2e-14	35.8
WP_011060341.1\|2244214_2245495_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.3e-111	50.0
WP_080512178.1\|2245685_2246588_-	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_011060342.1\|2246584_2247985_-	AAA family ATPase	NA	NA	NA	NA
WP_011060343.1\|2248530_2249430_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
2248337:2248355	attR	NA	NA	NA	NA
WP_011060344.1\|2249413_2250517_-	hypothetical protein	NA	NA	NA	NA
WP_011060345.1\|2250513_2252586_-	glycosyltransferase	NA	NA	NA	NA
WP_011060346.1\|2252611_2253559_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011060347.1\|2253663_2255853_-	glycosyltransferase	NA	NA	NA	NA
WP_011060348.1\|2255845_2256538_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_011060349.1\|2256543_2257920_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_011060350.1\|2257916_2259191_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.6e-06	21.9
WP_011060351.1\|2259180_2259996_-	ABC transporter permease	NA	NA	NA	NA
WP_011060352.1\|2260277_2260928_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_011060353.1\|2261025_2261886_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011060354.1\|2262071_2263643_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_011060355.1\|2263646_2264168_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011060356.1\|2264203_2264779_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011060357.1\|2264981_2265806_+	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_011060358.1\|2266274_2267816_+	purine permease	NA	NA	NA	NA
WP_041774138.1\|2267878_2268466_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_011060360.1\|2268559_2269717_-	MFS transporter	NA	NA	NA	NA
WP_011060361.1\|2270587_2270821_+	hypothetical protein	NA	NA	NA	NA
WP_011060362.1\|2270827_2271025_-	hypothetical protein	NA	NA	NA	NA
WP_011060363.1\|2271155_2272352_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_011060364.1\|2272689_2274705_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_169893377.1\|2274817_2276308_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_041752090.1\|2276357_2277404_-	HlyD family secretion protein	NA	NA	NA	NA
WP_011060367.1\|2277636_2279118_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_011060368.1\|2280375_2280915_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011060369.1\|2280941_2281775_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011060370.1\|2281823_2282258_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_011060371.1\|2282402_2283362_+\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA

DBSCAN-SWA_3

4341319 : 4394821

Pseudomonas_phage(55.32%)

capsid,terminase,integrase,tail,lysis,holin

attL 4382574:4382589|attR 4396786:4396801

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011062017.1\|4341319_4341841_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	7.5e-50	69.2
WP_085983366.1\|4341837_4342284_-	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	1.4e-33	53.8
WP_011062020.1\|4343540_4346630_-	host specificity protein J	Q3HQU5	Burkholderia_phage	8.5e-282	46.2
WP_011062021.1\|4346687_4347269_-\|tail	tail assembly protein	A0A1B0VME1	Pseudomonas_phage	3.1e-44	53.2
WP_011062022.1\|4347321_4347741_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	4.2e-43	61.9
WP_011062023.1\|4347839_4348646_-	KilA-N domain-containing protein	A0A2H4IZE1	uncultured_Caudovirales_phage	6.7e-122	80.6
WP_080512196.1\|4348642_4349617_-	hypothetical protein	B5WZU1	Pseudomonas_phage	1.2e-59	48.0
WP_011062025.1\|4349874_4350303_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_011062026.1\|4350410_4351133_+	HIRAN domain-containing protein	NA	NA	NA	NA
WP_011062027.1\|4351349_4351940_-	hypothetical protein	NA	NA	NA	NA
WP_011062028.1\|4352111_4352741_+	hypothetical protein	NA	NA	NA	NA
WP_011062029.1\|4352797_4353562_-	C40 family peptidase	A0A2I6PI52	Pseudomonas_phage	7.6e-83	54.9
WP_011062030.1\|4353564_4354248_-\|tail	phage minor tail protein L	A0A2I6PIA7	Pseudomonas_phage	2.7e-87	66.5
WP_011062031.1\|4354275_4355469_-\|tail	tail fiber domain-containing protein	A0A2H4PH88	Klebsiella_phage	7.0e-43	42.2
WP_011062032.1\|4355465_4355804_-\|tail	phage tail protein	A0A1B0VMG7	Pseudomonas_phage	1.2e-32	56.2
WP_011062033.1\|4355860_4356172_-	hypothetical protein	NA	NA	NA	NA
WP_011062034.1\|4356171_4359495_-\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	9.2e-125	31.8
WP_011062035.1\|4359491_4359743_-	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	7.4e-19	57.7
WP_011062036.1\|4359808_4360189_-\|tail	phage tail assembly chaperone	A0A2H4IYQ5	uncultured_Caudovirales_phage	5.7e-31	53.5
WP_011062037.1\|4360192_4360849_-\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	1.3e-54	50.2
WP_011062039.1\|4361251_4361668_-	DUF4128 domain-containing protein	A0A2H4J4N2	uncultured_Caudovirales_phage	1.3e-44	61.6
WP_011062040.1\|4361664_4362318_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	1.0e-104	86.6
WP_011062041.1\|4362314_4362683_-	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.6e-49	79.2
WP_011062042.1\|4362699_4363203_-	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.3e-78	88.0
WP_011062043.1\|4363206_4363515_-	hypothetical protein	A0A2H4J0G3	uncultured_Caudovirales_phage	9.4e-08	57.7
WP_011062044.1\|4363566_4364514_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	7.4e-128	69.6
WP_011062045.1\|4364525_4365242_-	hypothetical protein	A0A2H4J0Y0	uncultured_Caudovirales_phage	6.8e-33	48.0
WP_041774338.1\|4365351_4365819_+	hypothetical protein	NA	NA	NA	NA
WP_011062047.1\|4365832_4366921_-\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	4.5e-145	71.5
WP_011062048.1\|4366895_4368359_-	DUF4055 domain-containing protein	A0A2H4J5M6	uncultured_Caudovirales_phage	1.1e-173	62.9
WP_011062049.1\|4368355_4369657_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.6e-147	59.4
WP_011062050.1\|4369643_4370105_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	1.3e-50	80.5
WP_041774623.1\|4370136_4370733_-	hypothetical protein	A0A0S2SYA5	Pseudomonas_phage	8.5e-90	78.3
WP_041774340.1\|4370821_4371142_+	hypothetical protein	NA	NA	NA	NA
WP_011062052.1\|4371185_4371416_-	hypothetical protein	A0A1S6UB66	Serratia_phage	2.2e-17	64.0
WP_011062053.1\|4371473_4371797_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	5.7e-24	52.5
WP_041774341.1\|4371911_4372232_-	hypothetical protein	NA	NA	NA	NA
WP_041774343.1\|4372667_4372931_-	hypothetical protein	NA	NA	NA	NA
WP_011062055.1\|4373054_4373750_-	hypothetical protein	A0A1B0YZZ3	Pseudomonas_phage	3.7e-60	55.0
WP_011062056.1\|4373746_4374337_-	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	4.7e-72	68.4
WP_011062057.1\|4374336_4374924_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	1.7e-95	84.6
WP_050783791.1\|4374916_4375702_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	2.8e-56	51.9
WP_011062059.1\|4375703_4376678_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	6.2e-114	73.2
WP_080512197.1\|4376679_4377093_-	HNH endonuclease	NA	NA	NA	NA
WP_050783793.1\|4377095_4377899_-	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	5.2e-42	39.3
WP_138641061.1\|4377901_4378354_-	hypothetical protein	NA	NA	NA	NA
WP_011062062.1\|4378343_4378748_-	hypothetical protein	NA	NA	NA	NA
WP_041774345.1\|4378750_4379173_-	Rha family transcriptional regulator	A0A2D1GNM7	Pseudomonas_phage	1.2e-32	50.7
WP_041774348.1\|4379255_4379459_-	helix-turn-helix domain-containing protein	A0A2H4JF66	uncultured_Caudovirales_phage	1.7e-21	74.6
WP_011062064.1\|4379575_4380364_+	helix-turn-helix domain-containing protein	B5TK58	Pseudomonas_phage	1.3e-69	64.0
WP_011062065.1\|4380419_4380965_+	DUF4410 domain-containing protein	NA	NA	NA	NA
WP_011062066.1\|4381009_4381246_+	hypothetical protein	NA	NA	NA	NA
WP_011062067.1\|4381391_4382315_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	1.6e-50	36.5
4382574:4382589	attL	NA	NA	NA	NA
WP_041774351.1\|4384140_4384341_+	hypothetical protein	NA	NA	NA	NA
WP_011062070.1\|4384848_4385280_+	hypothetical protein	NA	NA	NA	NA
WP_041774353.1\|4385276_4385468_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.4e-09	50.0
WP_011062072.1\|4385464_4385665_+	hypothetical protein	NA	NA	NA	NA
WP_011062073.1\|4385661_4385835_+	hypothetical protein	A0A0S2SY66	Pseudomonas_phage	5.2e-08	56.1
WP_011062074.1\|4385974_4386721_+	hypothetical protein	I3PUZ3	Vibrio_phage	4.3e-46	40.3
WP_011062075.1\|4386717_4387281_+	siphovirus Gp157 family protein	A0A2H4IZG3	uncultured_Caudovirales_phage	1.2e-74	77.0
WP_011062076.1\|4387288_4387516_+	hypothetical protein	NA	NA	NA	NA
WP_011062077.1\|4387512_4387974_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	1.8e-50	64.1
WP_011062078.1\|4388055_4388367_+	hypothetical protein	NA	NA	NA	NA
WP_041774354.1\|4388363_4388666_-	hypothetical protein	NA	NA	NA	NA
WP_041774355.1\|4388757_4389312_-	hypothetical protein	NA	NA	NA	NA
WP_041774356.1\|4389422_4389788_+	hypothetical protein	NA	NA	NA	NA
WP_041774358.1\|4389784_4389979_-	hypothetical protein	NA	NA	NA	NA
WP_011062079.1\|4390089_4390848_+	hypothetical protein	A0A2H4J7T1	uncultured_Caudovirales_phage	4.8e-114	76.6
WP_011062080.1\|4390912_4391575_-	hypothetical protein	NA	NA	NA	NA
WP_011062081.1\|4391625_4393281_+	DNA cytosine methyltransferase	A0A2I7QRH3	Vibrio_phage	8.1e-106	44.3
WP_041774360.1\|4393527_4393770_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_011062083.1\|4393771_4394821_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.0e-106	58.3
4396786:4396801	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4468826 : 4475046

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011062157.1\|4468826_4469219_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.2e-54	78.3
WP_011062158.1\|4469220_4469583_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	5.2e-42	70.0
WP_011062159.1\|4469582_4469879_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.9e-29	67.7
WP_011062160.1\|4469875_4470211_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	6.1e-45	78.4
WP_011062161.1\|4470207_4471209_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.1e-169	86.8
WP_011062162.1\|4471297_4472299_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_011062163.1\|4472370_4473765_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_011062164.1\|4473765_4475046_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-98	54.1

DBSCAN-SWA_5

4561839 : 4605645

uncultured_Caudovirales_phage(25.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011062236.1\|4561839_4562829_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011062237.1\|4562861_4565219_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_011062238.1\|4565338_4566130_-	molecular chaperone	NA	NA	NA	NA
WP_011062239.1\|4566176_4566677_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011062240.1\|4566681_4567218_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011062241.1\|4567238_4567775_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_162865000.1\|4567877_4568378_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011062243.1\|4568618_4569749_+	cell division protein ZapE	NA	NA	NA	NA
WP_011062244.1\|4569745_4570360_+	hypothetical protein	NA	NA	NA	NA
WP_011062245.1\|4570346_4570715_+	hypothetical protein	NA	NA	NA	NA
WP_011062246.1\|4570804_4572118_+	serine/threonine-protein kinase	NA	NA	NA	NA
WP_011062247.1\|4572183_4572888_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011062248.1\|4572996_4574388_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011062249.1\|4574486_4575812_-	MFS transporter	NA	NA	NA	NA
WP_011062250.1\|4576098_4576986_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	9.6e-05	34.1
WP_011062251.1\|4577156_4578017_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011062252.1\|4578127_4579237_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_011062253.1\|4579339_4580167_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_011062254.1\|4580368_4580923_+	cytochrome b	NA	NA	NA	NA
WP_011062255.1\|4580913_4581843_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_011062256.1\|4582050_4584090_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_011062257.1\|4584249_4585395_-	EstA family serine hydrolase	NA	NA	NA	NA
WP_011062258.1\|4585543_4586611_-	fatty acid desaturase	NA	NA	NA	NA
WP_011062259.1\|4587120_4588251_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_011062260.1\|4588255_4589296_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011062262.1\|4589665_4590754_+	hypothetical protein	NA	NA	NA	NA
WP_011062263.1\|4590765_4591236_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011062264.1\|4591396_4594072_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_011062265.1\|4594077_4594923_-	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_011062266.1\|4595015_4595915_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011062267.1\|4596039_4597245_+	MFS transporter	NA	NA	NA	NA
WP_011062268.1\|4597303_4598182_-	sterol desaturase family protein	NA	NA	NA	NA
WP_011062269.1\|4598248_4599214_+	AraC family transcriptional regulator ligand-binding domain-containing protein	NA	NA	NA	NA
WP_011062270.1\|4599283_4601155_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_011062271.1\|4601381_4601654_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	2.3e-18	57.3
WP_011062272.1\|4601802_4604199_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-222	52.1
WP_011062273.1\|4604361_4605645_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-139	59.8

DBSCAN-SWA_6

6512814 : 6572114

Burkholderia_phage(22.22%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011063889.1\|6512814_6513315_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_011063890.1\|6513552_6514440_+	acyltransferase	NA	NA	NA	NA
WP_011063891.1\|6514440_6515598_-	glutathionylspermidine synthase family protein	Q19CT2	Aeromonas_virus	1.4e-67	36.5
WP_011063892.1\|6515594_6516293_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_011063893.1\|6516303_6516732_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_011063894.1\|6516870_6517437_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_011063895.1\|6517660_6518305_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011063896.1\|6518301_6518976_+	anti-sigma factor	NA	NA	NA	NA
WP_019094048.1\|6519133_6519718_+	hypothetical protein	NA	NA	NA	NA
WP_011063898.1\|6519910_6521110_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	6.5e-12	28.9
WP_011063899.1\|6521280_6522138_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_011063900.1\|6522294_6522927_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_011063901.1\|6522980_6525998_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_011063902.1\|6525994_6526297_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_011063903.1\|6526311_6527562_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_011063904.1\|6527585_6528839_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.9e-100	53.2
WP_011063905.1\|6529150_6529891_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_011063906.1\|6529991_6531032_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_011063907.1\|6531411_6532857_+	cytosine permease	NA	NA	NA	NA
WP_011063908.1\|6532853_6533681_+	carbon-nitrogen hydrolase	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	1.3e-19	34.1
WP_011063909.1\|6533759_6534860_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_011063910.1\|6535151_6536447_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_011063912.1\|6538338_6539109_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_011063913.1\|6539118_6540339_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_011063914.1\|6540338_6542288_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_011063915.1\|6542402_6544463_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_011063916.1\|6544478_6545009_-	hypothetical protein	NA	NA	NA	NA
WP_011063917.1\|6545170_6546148_-	dipeptidase	NA	NA	NA	NA
WP_011063918.1\|6546384_6546786_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_011063919.1\|6546894_6547245_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_011063920.1\|6547241_6547751_-	nucleoside deaminase	NA	NA	NA	NA
WP_011063921.1\|6547806_6549144_-	purine permease	NA	NA	NA	NA
WP_011063922.1\|6549325_6550240_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011063923.1\|6550339_6550594_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	6.1e-21	57.1
WP_011063924.1\|6550577_6550901_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	2.6e-32	68.5
WP_011063925.1\|6550935_6551352_+	DUF3010 family protein	NA	NA	NA	NA
WP_011063926.1\|6551389_6552349_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011063927.1\|6552543_6553488_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011063928.1\|6553576_6554464_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_011063929.1\|6554623_6555589_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_011063930.1\|6555697_6556174_+	thioesterase family protein	NA	NA	NA	NA
WP_011063931.1\|6556198_6557359_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_011063932.1\|6557613_6558042_-	DUF4952 domain-containing protein	NA	NA	NA	NA
WP_015637320.1\|6558354_6558618_+	hypothetical protein	NA	NA	NA	NA
WP_011063934.1\|6558680_6559127_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011063935.1\|6559127_6560231_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011063936.1\|6560643_6562020_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_011063937.1\|6562447_6563404_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011063938.1\|6563474_6564320_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011063939.1\|6564316_6565495_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-26	37.4
WP_011063940.1\|6565661_6567671_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.2e-18	26.8
WP_011063941.1\|6568100_6568694_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_011063942.1\|6568802_6570275_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_011063943.1\|6570410_6572114_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.5e-51	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_004129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection