CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_003910	Colwellia psychrerythraea 34H, complete sequence	5 crisprs	csa3,cas3,DEDDh,DinG,WYL	2	0	0	0

Cas Category Instructions

Results visualization

1. NC_003910

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CRISPR-Cas detection and classification

Crispr_ID: NC_003910_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003910_1

367913-368028

Orphan

Consensus_repeat	Method
TGCCTGGACAATGAATTAGTACCAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003910_1

>merge|NC_003910|1|367913-368028|CRISPRCasFinder
TGCCTGGACAATGAATTAGTACCAAAAAGTTATCCTGGCAAGCGTGCCTGGACAATGAATTAGTACCAAAAAGTTATCCTGGCAAGCGTGCCTGGACAATGAATTAGTACCAAAAA

>NC_003910|1|1|367913-368028|CRISPRCasFinder
TGCCTGGACAATGAATTAGTACCAAAAA	GTTATCCTGGCAAGCGTGCCTGGACAATGAATTAGTACCAAAAAGTTATCCTGGCAAGCG
TGCCTGGACAATGAATTAGTACCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003910.7\|WP_011041223.1\|369621_370026_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236608
NC_003910.7\|WP_011041208.1\|347502_348135_+\|HTH-type-transcriptional-repressor-FabR	unknown	unknown	gnl\|CDD\|236881
NC_003910.7\|WP_011041224.1\|370022_371384_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041231.1\|374379_375012_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NC_003910.7\|WP_011041217.1\|366108_366768_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NC_003910.7\|WP_011041227.1\|372008_372353_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375186
NC_003910.7\|WP_011041225.1\|371504_371732_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041209.1\|348136_349231_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	unknown	unknown	gnl\|CDD\|235332
NC_003910.7\|WP_011041216.1\|365550_365718_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041207.1\|345947_347348_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NC_003910.7\|WP_011041206.1\|345368_345863_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|132716
NC_003910.7\|WP_011041731.1\|373801_374005_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041222.1\|368164_369532_-\|zonular-occludens-toxin	unknown	unknown	gnl\|CDD\|222783
NC_003910.7\|WP_011041211.1\|349643_350126_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NC_003910.7\|WP_011041230.1\|374007_374265_-\|pyocin-activator-PrtN-family-protein	unknown	unknown	gnl\|CDD\|371380
NC_003910.7\|WP_011041215.1\|364394_365462_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_003910.7\|WP_011041226.1\|371747_372002_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041221.1\|367638_367887_+\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041228.1\|372378_373812_-\|replication-initiation-factor-domain-containing-protein	unknown	unknown	gnl\|CDD\|367101
NC_003910.7\|WP_011041214.1\|363279_364287_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991

Protein	Function_ID	Function_description	E-value
NC_003910.7\|WP_011041223.1\|369621_370026_-\|hypothetical-protein	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	0.00416803
NC_003910.7\|WP_011041208.1\|347502_348135_+\|HTH-type-transcriptional-repressor-FabR	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	1.00253e-120
NC_003910.7\|WP_011041230.1\|374007_374265_-\|pyocin-activator-PrtN-family-protein	gnl\|CDD\|371380	pfam11112, PyocinActivator, Pyocin activator protein PrtN. PrtN is a transcriptional activator for pyocin synthesis genes. It activates the expression of various pyocin genes by interaction with the DNA sequences conserved in the 5' noncoding regions of the pyocin genes.	9.81058e-29
NC_003910.7\|WP_011041231.1\|374379_375012_+\|transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	7.35709e-28
NC_003910.7\|WP_011041217.1\|366108_366768_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	6.34394e-06
NC_003910.7\|WP_011041227.1\|372008_372353_-\|hypothetical-protein	gnl\|CDD\|375186	pfam17426, Putative_G5P, Putative Gamma DNA binding protein G5P. This domain family is found in Gammaproteobacterial proteins. Members of the family are predicted to be G5P DNA binding proteins. Homologous proteins are found in pfam02303.	6.5708e-38
NC_003910.7\|WP_011041209.1\|348136_349231_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	gnl\|CDD\|235332	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.	0
NC_003910.7\|WP_011041207.1\|345947_347348_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NC_003910.7\|WP_011041206.1\|345368_345863_-\|histidine-phosphatase-family-protein	gnl\|CDD\|132716	cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed.	9.04535e-12
NC_003910.7\|WP_011041222.1\|368164_369532_-\|zonular-occludens-toxin	gnl\|CDD\|222783	PHA00350, PHA00350, putative assembly protein.	1.31139e-68
NC_003910.7\|WP_011041211.1\|349643_350126_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	6.46457e-34
NC_003910.7\|WP_011041215.1\|364394_365462_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.21913e-28
NC_003910.7\|WP_011041228.1\|372378_373812_-\|replication-initiation-factor-domain-containing-protein	gnl\|CDD\|367101	pfam02486, Rep_trans, Replication initiation factor. Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50.	1.08854e-37
NC_003910.7\|WP_011041214.1\|363279_364287_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0

>NC_003910.7|WP_011041221.1|367638_367887_+|hypothetical-protein
MLIKINESEPEFVAFVESLKQHYSEATAAGATKKAIVNHVSVTKELRKTKKKLEKLEAILEEIKTIKRQQKGLQQALDILTD
>NC_003910.7|WP_011041217.1|366108_366768_-|PEP-CTERM-sorting-domain-containing-protein
MKFKFLKGTFASLALACCSLANAGLIIGADSVTAPNSNGSALAVNIINQNGLSQNYTSGVTDFDTFLSTATHNNSCGSNCWANVPNVIFPINLDFSLGGLFELESIGIWNYHGALGLNEFELFAADNSSFLGSTSLGTFNVGMESSSAVASGQSFSFASTNASFIRMKLNSNYGSTGQVAIGEVVFEKASSTDIPEPSTLAIFALGMIGLASRRFKKQS
>NC_003910.7|WP_011041216.1|365550_365718_-|hypothetical-protein
MTSEEFKRLNFLSEKSINGDPTHSELVELKRLLTMWNISTEYNLLLSSYTTNTEN
>NC_003910.7|WP_011041215.1|364394_365462_+|site-specific-integrase
MASVTIDKRQKANGDFSYRCTVRVKKNGAIIHRESRTFSKKELANTWGRIRKDDIELNSIILQEKKISIAELIDLYINDADLWGNTGRTKRYVIDMLRDSPIASVLANELKTSDLISHCRMRRDAGAGGATVYHDIAYLRSIMKKALPVFDVKANWKIFEDAVPVLIDMKLVGKSQKRTRRPTENELERLIEALTERQKQQSSKIPFVDILNFSILTCMRIGEVCKIKWEDLNHEHKTVIVRDRKDPRKKEGNHMIVPLLAGSYDIVKKQLETDERIFPYASASVSAGFQRVRNTLGITDLRYHDLRREGASRLFEKGYSIEEVAQVTGHRNLNILWQVYTQLFPHKLHDKFAEE
>NC_003910.7|WP_011041214.1|363279_364287_-|tRNA-dihydrouridine(20/20a)-synthase-DusA
MTIITDSKPYIARATINHKLSVAPMLDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQSDTIKLSRSEVIDLMVPYIDETIANGGRAWHVLRHMLGLCNGLSGARKFRQHLSECAGKDGAGGQVLLDAFNKVTLP
>NC_003910.7|WP_011041211.1|349643_350126_-|RNA-binding-protein
MKSPTLQTVIIAVAFAIIAYIVTFAVPASSILIASLVFVSAFLAPLLTGSPSTNTASSTSSNTIASDEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDKAISALNDTEFQQRTLKVREAKERPERTEDNNQDD
>NC_003910.7|WP_011041209.1|348136_349231_-|tRNA-(uridine(54)-C5)-methyltransferase-TrmA
MFSHIHPDNYDAQLSKKQQDMAKLFSDFNLPAPDLYPSVPLNYRQRAEFRVWHEGDDLYYIMFDSKTKEKFRVDDFPVASELINNAMKALLATIKDQRELRFKLFQVDFLSTLSGELLISMLYHKPLEDNWQIEAEKLKAQLSTIAPVDIIGRAKKQKIIVDKDYVMESLNVGGKTYVYQQVENSFTQPNAGVNEQMLLWAQQATQNAGGDLIELYCGNGNFSIALAENFERVLGTEISKTSVRSAQINISENGIDNIDIVRMSSEEFSQAMNGERKFRRLEDFDLTTYNYDTVLVDPPRAGLDRDSVELVRRFNKIIYISCNPETLKDNLALLVETHQIDKFALFDQFPYTDHIETGVILTRK
>NC_003910.7|WP_011041208.1|347502_348135_+|HTH-type-transcriptional-repressor-FabR
MSGVRAQQKEKTRRQIINAALNQLSAERSFSNLSLREVAKEAGLAPTSFYRHFSDMDELGLTLVDEAGLTLRQLMRQARQRIAKGGSVIQISVQTFMELIESNGNIFRLLLRERSGTSAAFRAAVIREIRYFTMELCDYLQKANQLEADVAYMQANAAVTIVFSAGSDALDIEDKAERDQLAQQTIQQLRFIARGALELSDRRKISRKSR
>NC_003910.7|WP_011041207.1|345947_347348_-|Si-specific-NAD(P)(+)-transhydrogenase
MEKSFDYDVIIIGTGPGGEGAAMNLAKRQKKVAIIERYHQVGGGCTHWGTIPSKALRQSVSRLIEYNSNPLFNQNEQVKQLTFQDILSHASAVIQKQVSLRSGFYNRNRVEHIQGQASFIDAHTISISHPDGSVEKISAKQIMIATGSRPYRPDDIDFDHPRVYDSDSILSLKHAPQHVIIYGAGVIGSEYASIFRGLGVKVDLINTRERLLSFLDTEMSDSLSYHLWNSGVVIRHGEEIERVESSEDAVIVHLKSGKKMRADCLLFANGRTGNTADLNLAAAGLKADGRGQLKVNDCYQTEVDNIFAVGDVIGYPSLASAAFDQGRIAASAMVDSSSKAKLIVDIPTGIYTIPEISSVGKTEQELTEAKIPYEVGRAQFKHLARAQISNNLVGSLKILFHRETKEILGIHCFGENAAEIIHIGQAIMQQTNGGNTIEYFVETTFNYPTMAEAFRVAALNGLNRLF
>NC_003910.7|WP_011041206.1|345368_345863_-|histidine-phosphatase-family-protein
MKKFSLMIAGILLTQPCLASDNFTLYLVRHAEKQADSKNPPLTQCGEERAKQLAMLLSTANIKSVYSTNYQRTMSTAAPLSSRQNIAIKNYDPKQLEQFSLHLKDHKENALIVGHSNTTPQLTQLLSNQKVDDLTEKEYQMLYQVQFIEGRSQLTLLNQPLSCL
>NC_003910.7|WP_011041222.1|368164_369532_-|zonular-occludens-toxin
MATKVFHGPPGSYKSSTAMWFEIVPALRIGRVVVTNLQGIKTLEEIQRELKEVFPSTARLLRISIGNDTGMLLMRNFFHWLPIGALIFLDEIQDIYPNDKSFKASDYDYKTEGAFDDLLPQEFSEIYHEEQRKIKSNVNIEDYQDDIGESLFDERNYLRYPRTLRECFMRHRHYNWDILLATPDIKEISSFIRSVCEVAYAHSSKDAIPIPYYKRRPRILEHLPKTNGISVGKNDIVTFKKVPLDVFKLYKSTATGKSTKSGAGQSPITPSVIVGFAFVVAYLVYMVFFFFDDESIEVDEPLANSLPNAISQSPKASAAAVQVANASVRTAQKSDGEINPFSFRRASVSTVTAPNNFVALPFGATKMYINAVNTVYFNKHRVTRDYVFTAYINDEVLNVGSESLIAMGYKIFFSSDCLVELRSNNHSNYVYCEPTKPSEPFQEARGNSPIQLSLL
>NC_003910.7|WP_011041223.1|369621_370026_-|hypothetical-protein
MRLFIFVLLAFFSFDIFAAPQTGVTGFFETATIFFMSIYEFFTVIIPTAIGDFFVWLTSYLLYLKFYLMYETLVFAHEVALSFIQMININEVVNTAISNLPPDLRQAASDMRFFDALSLLIEALITRLVYQMSF
>NC_003910.7|WP_011041224.1|370022_371384_-|hypothetical-protein
MFRLLLFILIFIFSFNVSAIVTITNKIGLASAFTFDYCSGDDAQSANCAQIAPSEIAYGDGNTYYKCPLIYSSSTRIKYRLGSQCNDSGNITATLYLSYSVGCQSPIECHELANLDCSSTSRVVTGFVYTSPNVYSYSCEDFKSESDKCNDVVKNQCANNWGVKSSNYTDDGQGTTSCTGVCNDGSIPKEEDCSVYPFCDVPEPPSDLDFGSGGTGSSVDPSTTTTEDVEHDIDYEADGTTSDTSSNISSLQGDKLINEVVATRNANTKNLASTTETTNQTIVEKSDDISTTVSNSANGIIDAVNRIEKAVFDDKGIIGAVNSLGSGIDGLGDKIDGLGDELGGSYQSDFGVASFSAYDTLFINESDLTGLTDGFKASIGVENRLFINEVREKFNFTAGNSGGYQANNLDLGKWGSHDISLARFSEYFGGVGNVVYFLAALSALTIVLGGIKS
>NC_003910.7|WP_011041225.1|371504_371732_-|hypothetical-protein
MNKLVSFLKTKKVKAVAAVSAIAGSSAAVQAADYTAQIGTAVTEGSGNVTAVIAGVIGVAILGFGVGKMLGWFGR
>NC_003910.7|WP_011041226.1|371747_372002_-|hypothetical-protein
MSVCAANDGTGYLKIVAETDCTEFVLVSQSEFVELQSGSLQQMNETLHLLFAFDVEVFAIVELALIMAFLTSHFGGRVARWLGK
>NC_003910.7|WP_011041227.1|372008_372353_-|hypothetical-protein
MSIQTGIFLRGILVGTKLTKNRYIDKGGVAQENSYTEIGIEVSFVNGFDQEQKMIRTARISAEKEKDAFFIKTLSESHGALVELPVNVGDYRNVYVDSKAVLLVIEPAQQQKAG
>NC_003910.7|WP_011041228.1|372378_373812_-|replication-initiation-factor-domain-containing-protein
MKTKPTTIPCLVDALSLTWSPKELLNIKQMAKIGACIKSELIVKAKDAALNRELAKLENTKNKELLGTNAFNAHEYEAILSRYKESCSTITREYNNRRHKDLPLKSLALSDNEVSARYELRDMLKGELEVDTGIKYGDRLNNLLDNIGVDLLDVLCCGEVERFVCRLNNVFTQETFIWTVKNNPTGRFNYSYSATLYADGEQAGVICWGGKNLGCYVSFMGTGCNALDMKRLYEEIKNIPALKITRIDLAHDDYAGKHSIKRALSKAKKGLFNSGGRPACYMYVESGHLTEKMLKENFKDLKEISNESTKSTAKKTFGFIPSKGKTLYIGSRESGKLLRIYEKGKQLGDMKSKWVRWEVELHSSQRVIPLDAMVKPSEYLAATYPALNFLSVEQCKIKTLVKQATMTIEKIVENQVISTRKAINMMRVICGLSDSEIVEKFVKDIEEPDCRSSMPKRLKASVIEEWVLQQQAQTAAA
>NC_003910.7|WP_011041731.1|373801_374005_-|hypothetical-protein
MNNPNVYFQREDWGDVAIQHNGQVHHFCNLVSLIGFLQTVYGHEFNLIEVDENNYHELQRQGAFDEN
>NC_003910.7|WP_011041230.1|374007_374265_-|pyocin-activator-PrtN-family-protein
MNTNFALLARFESPVIELKDVCQEFFGISVKTAKQKIKGQDFPVPTFSLSKSERSPVFIKVEDLASYIDKQYEIASKEWQQVHVA
>NC_003910.7|WP_011041231.1|374379_375012_+|transcriptional-regulator
MFLKENSVDDFDKQLDDLFKTTKTSRISELSEALGVSPTTIRTWRGRNKIPASAFRKAELSIQNDSDVKTDTRISLSFYEISASAGGGALVEVEEQANLISFEPEWLNKEIGVNANDVFLMLVDGDSMYPTLKNGAMIMVNKHFNGLSDGIYVMRHEQNLLVKRLQMLPNGIIKVKSDNNLYEPWEINKENLDGTDIEIIGRVVWSGQRM

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Crispr_ID: NC_003910_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003910_2

760246-760401

Orphan

Consensus_repeat	Method
GATACTATAATTTGGCGAATGAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_003910_2

>merge|NC_003910|2|760246-760401|CRISPRCasFinder
GATACTATAATTTGGCGAATGAATTTTGCTGAAGATGCGCTAGACTGGAAAAATACAGCATCAACAGATACCATAATTTGGCGAATGAATGTCGAAACTAACACGATAATTTGGAGAATGAATGTTGAGTCAGATACCATCATTTGGAGGATGGGT

>NC_003910|2|2|760246-760401|CRISPRCasFinder
GATACTATAATTTGGCGAATGAAT	TTTGCTGAAGATGCGCTAGACTGGAAAAATACAGCATCAACA
GATACCATAATTTGGCGAATGAAT	GTCGAAACTAACACGATAATTTGGAGAATGAATGTTGAGTCA
GATACCATCATTTGGAGGATGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003910.7\|WP_011041607.1\|767325_768399_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236204
NC_003910.7\|WP_011041613.1\|779732_781535_+\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041612.1\|777128_779114_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_003910.7\|WP_011041602.1\|756620_758450_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NC_003910.7\|WP_011041598.1\|752365_752644_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|185338
NC_003910.7\|WP_011041611.1\|775309_776800_+\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
NC_003910.7\|WP_011041591.1\|743692_744859_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NC_003910.7\|WP_011041600.1\|753795_756165_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NC_003910.7\|WP_049757728.1\|769181_769808_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NC_003910.7\|WP_011041615.1\|783834_784707_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_003910.7\|WP_011041595.1\|746997_750081_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_003910.7\|WP_138140230.1\|763720_766744_-\|response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_003910.7\|WP_011041593.1\|744992_746060_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NC_003910.7\|WP_011041610.1\|770681_775289_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NC_003910.7\|WP_011041614.1\|781567_783835_+\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_003910.7\|WP_011041596.1\|750095_751196_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_003910.7\|WP_011041594.1\|746188_746689_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_003910.7\|WP_011041597.1\|751337_751958_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NC_003910.7\|WP_011041604.1\|760545_763707_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|225829
NC_003910.7\|WP_011041599.1\|753083_753377_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_003910.7\|WP_011041607.1\|767325_768399_-\|hypothetical-protein	gnl\|CDD\|236204	PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated.	1.37525e-11
NC_003910.7\|WP_011041614.1\|781567_783835_+\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.9095e-06
NC_003910.7\|WP_011041612.1\|777128_779114_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.3207e-63
NC_003910.7\|WP_011041602.1\|756620_758450_+\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	9.03095e-74
NC_003910.7\|WP_011041598.1\|752365_752644_+\|peptidylprolyl-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	4.54905e-35
NC_003910.7\|WP_011041611.1\|775309_776800_+\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NC_003910.7\|WP_011041591.1\|743692_744859_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	3.29796e-123
NC_003910.7\|WP_011041600.1\|753795_756165_-\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.34121e-77
NC_003910.7\|WP_011041595.1\|746997_750081_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_003910.7\|WP_138140230.1\|763720_766744_-\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.78188e-42
NC_003910.7\|WP_011041593.1\|744992_746060_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NC_003910.7\|WP_011041610.1\|770681_775289_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NC_003910.7\|WP_011041615.1\|783834_784707_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	1.05228e-16
NC_003910.7\|WP_011041596.1\|750095_751196_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.62834e-62
NC_003910.7\|WP_011041594.1\|746188_746689_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.43365e-11
NC_003910.7\|WP_011041597.1\|751337_751958_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	1.65322e-25
NC_003910.7\|WP_011041604.1\|760545_763707_+\|diguanylate-cyclase	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	2.00445e-23
NC_003910.7\|WP_049757728.1\|769181_769808_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	5.45719e-55

>NC_003910.7|WP_011041602.1|756620_758450_+|S8-family-serine-peptidase
MKISKFTTSVLTLAVTAAFSAQAADDRYIIKVDNSKKGVVKALAKKLGADLKVDGNGFIAAAFSGKNLADVKGLLNNPHIQMVEEDQRRMPLSLYSDDVGNAMTEQLTPYAVVQSQADQVAFNASAGMKVCIIDSGLDRSNQDFEWNNITGDNDSGTGNWDENGGPHGTHVAGTIGAADNNVGVVGMAPGVDMHIIKVFNTDGWGYSSDLAYAADKCSAAGANIISMSLGGGGANSTEENAFKAFTAAGGLVVAAAGNDGNDVRSFPAGYSSVMMVGANDNNNNIADFSQYPSCSVTSGKGKRQTTTTDETICVEVTAGGVDTLSTYPAGMATSASMSANGVDFASSSMENPGNAIGNTYYMGTAEATDSGANGNICVIDRGVISFHDKVENCENSGGIGAILINNEAGMLYGTLGDTNATTIPAVGATFEDRADLLAATTAILTIGTSDYGFMSGTSMATPAVSGMAALIWSNHNECTGTEIRDALKATAQDSGAIGHDVNFGSGIVKAKAASDYLTANGCGGGVTPPPAGDITLDTTTGRAKGKNYVDLNWSGASASSVDIYRDGSLRTTTANDGSFRDSFRASGSFTYKVCDQGSDNCSSEVTVNF
>NC_003910.7|WP_011041600.1|753795_756165_-|S8-family-serine-peptidase
MKNNRKLVLSTIALSVLAVTSAASNATPQAQLNKAEKMTTAQSSTLSFAQWRAQQKLERTDYTDRLIITFKDKKQGKSVPPGLAKKIGLNLKHVKILKNNSHVIALDEMHAVKDVEKFIEKLRKHPSVVSIEPDYQRFLMAQNQPWGISKTQSDQLTDNDAANMTVCIIDSGYQRNNPDLNANNAAGTNNSGTGNWYENGGSHGTHVAGTIAGVNNSEGVVGILPSTNVNLHIVKVFNEAGWGYSGDLSDAVDTCVNNGAKVINMSLGGSGSSNTEKNALQAAADTGVLLIAASGNDGNATLSYPASYDAVMAVGALDSNNQHAEFSQYTSQVEVSAPGEAILSTVAGDGRLGFITVGSTTYGNDSVVPQTHYIQSAGNFVVSNVDGAANGVLSSCTISGSSYSCSNVNGNICLAERNDNQKGSNYPEINPAKACADAGASAVIVYSDSTRPGLQNPFLVDANTDVTVPTVSVSRALGQQLMTQLGSNASLTVNSSQDYAYYNGTSMATPHVTGVAALVWSNNPNCTADDVRSALKNTAVDLDAAGRDDKTGFGLVQAKAASDALAASCGGGTTPPPPTGNTLTNGVAKTNLGSSTELSFTMEVPAGATELNFAMAGGTGDADLYVKFGSAPTTSSYDCRPYKGGNTESCPIASVQAGTYHVKMIAYSAFTGVSLTGSFTEPTTGGGATGGSASVTDISVARQAWTYYTIDVPAGMATLDFAMSGGTGDADMYIRRGSQPTSSTYDCRPYKSGNTEACAFTNPAADTWHIGVYGYSAASGVSLDVTYNP
>NC_003910.7|WP_011041599.1|753083_753377_+|hypothetical-protein
MIKVIIERVLAEDMETTYDNEIRKTLAAIMAAKGYISGASYTNVDNPNIRTIITDWDNVGCWNRWYKSQTRQEVNKTIHLMLKQDEKIKVLMSQSLS
>NC_003910.7|WP_011041598.1|752365_752644_+|peptidylprolyl-isomerase
MAATAYALHILVKHKEIAEDIIEQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFKRGQMVPQFDKIAFKGALLESHLVKTKFGWHVIKVLYRT
>NC_003910.7|WP_011041597.1|751337_751958_+|TetR/AcrR-family-transcriptional-regulator
MVKDSTVDIKKLSPRGLLILDAAQNLFYNLGFDETSLAMIIKDAGGSRRSIYNEFGNKHGLLMAVIQRQVKTQSEILTSINRDLEAKEALNQVCFKFVVGMLSPELMSLFRLVVQQVVKFPELGEMIYKNGPMTGILPLVDYLTWLTEQKILKIDNCHFSAQMLMEMAKGPLHTRSLLLPDKQVSDEEITYQVTKAVDLFLHAHKM
>NC_003910.7|WP_011041596.1|750095_751196_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRALSFIFIALILVGCNEPAKEITKPIRPIMWTKVKISPFEQIRTLSGIVAPVEATKLSFEVQGKIQTIEVNLGNEVVKGQELARLNQRNFNLGLQSAQAQYQQAKATLIDARNSHRRYEQLLKQGVVSQSGFDNAKATYDASKSAADVAQAQLDIASKNLQDSILLAPYDGIITKRLYEPSQQISAGQSLFEIEGKHGLEVHVMVPETLIRELRQLSILPIHFPVLPELTMQGQITEIGTRAEYANAFPVTAVLEGDNPLLRAGMTAEVDFSFSGTGRTGHTGDVFRIPATALSAGLEQKAYVFVYNPDSQQVIKTQVQTENIFKNEVFISSGLKQGDIIAIAGVAFLRDGQQVSLTDNNVQRFN
>NC_003910.7|WP_011041595.1|746997_750081_-|efflux-RND-transporter-permease-subunit
MNITQVAFTYRKSVFLIIAVLLINGLFAYFTLPAQEDPTITIREAIVSTSFPGMAPDRIEQLITKKLEEEIRKIPQVKEIKSSSATGISIIHVKIYDRYFNLDDIWQNLRNKVTAAHNKMPSGTHTPFVNDEFGDVSVVTLALTADGFDLGEMYDIAQHIRDTLYGVEGTKKIEILGRQEERIFLEASNAKLAQLGISPQSLINELQKQNIVRSGGEVNTGAISFIVEPSGNFNSLVEIGDTYISIPNTEDFIALKDVVTLRRDFIDPPDKTAYLNGQSAIFFAISMLPENNLLEYAPRVLNKINEIESSLPIGYNLEIATYQADQVAKTINGVSVNVLQTLAIVLVVVILFLGLRTGLIVGAIVPFVMLTTLSIMQFSDMKLERMSLATLIISLGLLVDNGIVIAEDFKRRLEDGVDRYNAMLQGSKELAIPLLSSSVTTVLFFLPLMLAEHVAGEYTRSISLVILITLLTSWILALCVTPLLCYFFITLPENKKAKVENNESTREEPGKFYRYYETFLHWLLKHKALFMTAMLALFIGSILSMKYVAKQFFPDSDRTQILVNIDLPNGTSSTETNRQMKDIFTWLEDETRFDFIESYSAYVGFSGPRFVMSLNPEDPAQNKGFMVLNVKDETDISATVLSLDEQIEHDFPNVSARVKKMFLGPSDSSTIKIQVKGPDKEVIYKKAQQIMAVLHDVPNTIDIRTDWENLITKIDVQIDQHRAKRSGLTSEEIAQALDAYFSGSKITEFREGDNIIPVVLRAEQAERQSLDRLRTLNIYSNKTGKTVPLFQVANLAPYNQFSIIHHEDLFRTISIQARNTDVAAEDLKLIIDAKIQALAADLPINHNIEYDGVIKESRAAQKALGASMPIVLGLILILLVAQFNSFRQAAVITLTIPLSFIGAVLGLFLMQAPFGFMVTLGLYSLAGIIINNAIVLIDRIKIETASGKSDYQAVVDACLTRLRPIAMTTITTVMGLLPLIIGKDPLFYGMANVIAFGLGIGTILTLAVVPALYCGFYKITDVQVEPV
>NC_003910.7|WP_011041594.1|746188_746689_-|RDD-family-protein
MTDTTLANFPRAGFRRRFGSWIYDLLIIIAIFMLSGYVCVALFVALDAMGLISIARSGFGIDWNATHLAYKVAFNFWCVAWVCLFFIYFWSKKGQTLGMRAWRLRLQNRDGSLLSKTTAIKRLLPTLLGLGNLWVIVDRKNKLSLQDRVTNTEVVVLSLEANRGRL
>NC_003910.7|WP_011041593.1|744992_746060_+|LPS-export-ABC-transporter-permease-LptG
MRIIDFYIGRVIASTTFITLAVFVSVSGIIKFVEQMRAIGRGNYDLAHAALYVLYAVPRDVEVFFPMSALIGGLIGIGMLASNSELIVMQAAGLSRLDIIKSVMKTAVLLIIVSMAIGEWLAPSGEAKAREIRAQAISGGSLIAAKNGVWAKDGDYFVNIGEVLDRGQLKKVQIYGFNDELKIDSWLSAKSAIYQDKSWLLTDVEEFSLTENEIITKSHSQKIWNSSLTPKKLGVVTVTPESLSLRGLIDYLDYLEANEQDPSRYKLAFWRKIMQPLTVAVMLLVALSFIFGPLRSVSMGARIMMGVFTGILFFISNEVLGSLSLVYQLPPILGAMIPSLFFVGIAWYFIGKKTA
>NC_003910.7|WP_011041591.1|743692_744859_+|LPS-export-ABC-transporter-permease-LptF
MIIFRYLLKEVAKTQLAVFFVLMTIFISQKFVRVLGDASEGSIPGQLVMTFIALKIPDLAGFILPLSLFLGVLLAYGRIYADSEMTVLHACGVSEWYVVRVTLVLAVITAIFTGIFTLYLAPLASEYQYKVKEELAADSGLSALVSGRFQQTGNQDAVVFIHDKDRETNSFNKVFVAQLPKGDNVDASIINSSLVYAKTGKVFEDDTGSQQLVLGDGIRYHRDIESKEFQSVAFNKYYIQIKDQEVEHQHRKLSAISTLELYNNMPPELESAYRATIQWRIAFPLACIILIFIAVPLSVVNPRQGKFAKMLPALMLFLGYLLLLTSMRSAIEKNAIPSVVGLWPIHISALFIGMMLLMKERSSGRIIKAKLPSFKRKSIKKMTEGKES
>NC_003910.7|WP_011041604.1|760545_763707_+|diguanylate-cyclase
MKNILLLLFLISLHFSVFAQEVKLFKNFGIDNPMSYNFVRTIVQDKDGFMWFGSSEGLDRFDGHQTLSFQHDSSRPSSLSSNVISRILIDKQQRIWVGTFGGGLNLYRETTQDFLHFTTKTKNATLTNNSVNALFEDSEGKIWVATENGLNILRSHDEKWSTQQIFQELGNPNSLTHNAVLSIIETRNQEIWVGTNGGGISVFDLQGHFIKSIKYGDQNSATYVNKFVSSLHLDINENVWIGTVDSGLLKYTPSTEQFIHFQLNVDDQSTISSNAISNIFQDSEQNIWIATDNGLSIYNYKTNHFSRYNYSPNNPYSISNDFVLTFFEDNHKVMWIGTFSGVNRWDPNLATFRQYSTQTDPVLKNHNITSFAQFDKENIYFSTYSAGIYRLSQYDNSISTADFNASFSEYRIMTMFADENTLWVGTRASGLFSINLTTKKVISYSHDAENNNSISANSITDIIKDRNGNLWVSTFHQGLNLLNKDGTFKRFIKNKLNREKGPGSNHVVQLLEDDQGFIWLATFGGGISRFDPMKRTFKHFSHEENNLNSISDDFSWIMLLDNNKNLWFGTQSSGFSILSRENRQNNNFSFTHLDTKDGMKSLTVYGITQDAYDDIWFSTNKGISRYSLGDKSFKHFNLTHGLVDLEYTHSAVFRSMDNTLYFGAGKGMNSINPEKINTSIFSPEVRLTSILKLNEPMPLGSSLSKLTQLEFDYSEQLISFEYVGLNYAAPESTRYKYRLLGFDQEWIDAGKSRRATYTNLPAGSYQLQVIAANNDNMWSEPGLSLDIVVKPAPWNTWWAYVLYAALIALLLLTYSRFLNRKLLIEQQQKANLKQQVRDKTQEFHLKNVELEQANKQLENAATVDKVTGVKSRRYLDIYIEQASQLMSQIHENILPVQRSLLPRLYLVMIKLENIEQVTNSQLVNLTDLLLYSRNNEDLVIRWADDTFVIIGYEKDDNTRELVTRLTDRFAQVLGHGIKSNVAYSFYPFNFEQPMALSWDQVSVIAEHALKVARDNNMNWLGLYAPKVQPFNYLDVIQQQDVGELSKLVKLKQG
>NC_003910.7|WP_138140230.1|763720_766744_-|response-regulator
MQRPIRQLPLALALVCLVTFIPYPFVANWLTMHFESALNFALFTLQIISSIFLFFCFKKNTSRSFKLFWQYLLLAALAIVASKLLNSTPASVSQQLYQDFASLFVYFFILLAIETNPHLSDVPLNKYIGGRVPAIFFTLICFCYFILLPAEFSGKIYQTAKPSLLFHLVINSLIIARLIQCLVSVKDNFWRYSFALLSGSAVFLLIGNISAFIDKDSVFISTNSYSLQLIALLPYFLLILAANITLKVSKLPIAIEKEPHPEHYILLLMLIPTAAHLYGYEHKLFYSVNSNLQSITLLFWLFVGATLLSGIAITHRSQTKKLKQNLLSEKNQHQQLNSLNNDLTDSLINSEDKAIVNASNNAILTTSITGEILSANPAAVQMFQSLEQELKGISVSRLFAEKDEMHFFFDFQSNVYSLQRKALGISVECLSLRSDGTEFPAQAELQWADRAKQPLIVITFINLSARKHAERQTLELKDKFIANISHEFRTPLTIINGIIDRYITKTTNELESEELTTAKRNGLRLVRMVEQLLELSRLSDNPQLSLSTYRLQTLMMMPVDSFSRMASQNNLSFTSNIPDDLWLDCDGQAFEKIIFNLLANAIKYTPNGGSVQVNAYVEQDTIILNVIDSGIGINKDSLDKIFGRFQRADDVKNQATFGVGIGLSLVSELVKAHGWRISLVSEHGHGSKFSLSIPLAPANEVEAEISMSISENEVTSLLTEQRCVANIESNHSQKVVLVIEDNLDMQSHIKQVIEQQHHCILAGSGELGLQLAQEYIPDLIVCDLMLTGIDGFEVLTQLKQDEMTAHIPVILLTARSDLESRLQGLNLNADEYLSKPFNQHELLTRIQNLITNRQQLQKRYLQKFNEERKAERKSTSQQNVANLTQETVEQISLEDKFLHKLEALIAKHYTEPELDISLLAKELAMSERQLQRKIKVILGTTPNNFIKEFRLKKAQALLTSGAQIGRIALDVGFSSQTYFGRCFKESYHCTPKQYQQKMAQQNSTPDC
>NC_003910.7|WP_011041607.1|767325_768399_-|hypothetical-protein
MKTPSAFIIGAAKKQDEVGSLDQVLLLESQLLQRGITPKHLVIEPLEADWHSPEKEHHFRSGCAPIEALAEAKRLIENGEAAVVISGEDHIRTGYSRENRLSKMAVYGQSYPLTQAYTDLARAFSDNHTITEQQFKEFSSALFENYQISFRNALSDTFTPELLPDLRWHKPITDLFRGVDCANPMVDFSGRLLLTRADIAEQLGVDKSQWLKVKAVGLSRLDGDGREFLTDISRYEHLQQAYQQACSEANIDFVQLFKGGDALLETYTCYPVVPMAFLLVSGLVEVLEDIPDFLAEHSITITGGMNLAKAAWNNPALNALVLMHHRLCDGPEKLGLIHGNGGLGYRQGVAIVERVDV
>NC_003910.7|WP_049757728.1|769181_769808_+|trimeric-intracellular-cation-channel-family-protein
MLFEITDVVNIMGLSAVAVFAISGALDAARQKMDILGFMLIGTATGLGGGTLRDLLLGNVPVFWIREPIWIIVCLVSTAITYFIAPKLASITRALIWMDAVGIALFAVVGTEIALEFGTSPLIAICMGVMTASFGGIARDVLSGSNLTLMNEELYITTTVAGSVMYLWLNTLSLPANYDLIGGFFIAFILRALAIRFHIKLPNHYRKD
>NC_003910.7|WP_011041610.1|770681_775289_+|glutamate-synthase-large-subunit
MNDMSKKSQGLYRAEFEHDSCGIGFVANLKGKKTHDIIENALTMLSCMEHRGGTGFDVKSGDGAGILIQIPHDFLSQETEKLGFSLPDAGNYGVGMIFFPRDKAQSEACREILNQNITELGLTLLGYRDVPGDNSMLGAASFDSEPNIEQVFIAKPAALTAQEFERKLFVLRKYTSHKINASGITERDEFYVTSMSSTKIVYKGQFTTQQVRQYYLDLQDERTISGMAMFHSRFSTNTFPAWRRAQPFRYIAHNGEINTVRGNINWMNAREALFSSVNFSDAELKMLNPICNNDNSDSANLDMAIELLVLSGRSLAQVMMMMVPEAWQTQTDMDATKHAFYEYYACIMEPWDGPASLSFSDGNVIGATLDRNGLRPSRYLLTEDGTLVMGSETGTLCVDQSTVVEKGRLQPGKIFIADLKQGRIISDDEVKAQVSSAQPYGKWLADNKVELDKLPVPIASIAQPPLAELRKMQKAFGYTSEDLNLVLAGMVGTSKEPLGAMGTDTPLAVLSSRPQQLSHYFKQLFAQVTNPPIDPIREELVMSLRGYIGKSFNLLDETPEHCHKVEIEQPVLTIDQLRKLQYIDNNHLQSKTIAITFKASGEAGALKKALDRVCFNAKSAVEDGYEILILSDREVDSDHVAIPSVLATAAVHHYLIREKLRSGADIILESGDIRETHHFATVIGYGAAAVNPYLALESMYGLRDEGVLDSKLTDEEIVAKYTAAVGSGLLKTFSKMGISTLQSYLGAQVFEALGINSDVIDEYFTGTVSRIQGLSLDQIAQEALLRHREGFPEASRIAVENLLPTGGEYSWRNDGERHLFSPTVIRLLQHSTASNDTNQFKQYAKTVDDQSKEAFTLRGLLELNSDRPSIPLSEVEPIENIFKRFASGAMSFGSISWEAHTTLAIAMNRIGGKSNSGEGGEDPIRYTPLENGDSMNSRIKQVASGRFGVTSHYLTNADELQIKMAQGAKPGEGGQLPGDKVDAWIGKTRGSTPGVGLISPPPHHDIYSIEDLSQLIFDLKNANREARVNVKLVSEAGVGTIASGVAKAYADVVLIAGHDGGTGASPLSSIKHTGLPWELGLAETHQTLVRNHLRSRITVQTDGQLKTPRDLAIATLLGAEEYGMATTALVVEGCIMMRKCHLNTCPVGIATQDKGLRDKFTGRADILVNFFTMMAEGLREIMAELGFKTIEEMVGQTQCLKQLENVDHWKYQGLDLTPLLHKEESHESETLYQSINQKHLIDDIIDRKMIKDAQVALDSQQSVSLEYDVINTDRTIGAMISNEISKKYQAEGLPENTIKVKFNGSAGQSFGCFSAKGLHFELEGDANDYFGKGLSGANLVVYPSKQAKFIASENILIGNVAFFGATSGSAFIRGIAGERFCVRNSGATAVVEGVGDHGCEYMTGGKAVILGATGRNFAAGMSGGVAYVLDDNKDFAPKCNMEMVSLETVDTDAESLELKALIAEHFAATGSDVANELLNDWDNNVKRFVKVMPVDYKRMQGYMNDVRESGKFESEYDIAVQAFDIHLNKLASAKA
>NC_003910.7|WP_011041611.1|775309_776800_+|glutamate-synthase-subunit-beta
MGNPTGFINVGRALPTERKAGERLSDWLEVYEEIPLKAVEKQASRCMDCGVPFCQSAKSEFAPAVAGCPVNNVIPEWNDLIYRGRWKDAIELLHKTNNFPEFTGRVCPAPCEGACVLGINADPVAIKLHEKEIIDHAFKEGWVVAQPPSARTGKNVAVIGSGPAGLAAAAQLNKAGHMVTVYERADRIGGLLMYGIPNMKLQKELVQRRVDILAEEGIVFVTNTEVGKDVSVEKLESDFDAIVLCIGATVPRDLPVEGRELNGVHFAMDFLKANTKSLLDSEHKDGQYINAQGKNVVVIGGGDTGTDCIGTSLRHQCTNALQLEIMPRPPEKREENNNPWPQWPKRLLVDYGQKEAIEIQGQDPRQYLVMTKKIESDVQGNVKAVHTVDITWERNDKGQMFPQEVAGSEKAIPADIVLIAMGFMGPEGGLVEQFGLEQDNRSNIAAEYDKFATSKQGVFAAGDGRRGQSLIVWAIDEGRRCAREVDSYLMGKSYLP
>NC_003910.7|WP_011041612.1|777128_779114_+|methyl-accepting-chemotaxis-protein
MNLLNNLVFKQKLILLVLIPLLATLYFSLNNLNSLTSKQGQLEEIHDLITLTVANNALVHELQKERGATAVYLGSKGENFSYELKEQRKLTDKAHTLLNAKLKVFSSENDKVNNIILTVKNGLLKLDRIRARSDELSISLNDAIGYYTTQNHEMLSLAEFFSTISPTETVSNAIGYYVLLEAKERAGIERAVASGGFAMDKFTQAAFQKFTSLVALQDSYLEQFSAKASSNTINAYKNSLNSNAVIEVNRMRNVAVSVGQAGPFNIDASVWFKSATGRINLLKDIENLVADEFITDIDKLLHEASRGVSINLIIIIITFIMTIFIVYVILTNLIKQLNEISVTMEKVTEHNDLTVQAGVFSTDELGNIAKGLNKTLSTFSNAITEIKSSSISLAASAQQSSVIVNNNVDSLQQQRDETAQVATAIEEMSATVQEVSRNANEAMSSTHQVNTQAIESQTVVGNSLEAINNLATEVSEIGTLISGLHSTTSNISNVIDVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQRTQDSTIEIEEIINQLQSEASNANTMVAGTQKRADESIDGAHQIELSLTSIVTAVSDINLMIEQIATAAEEQVSVTEDINKNVNDIDKKSSEITSGAQDVSLAASEQVEIANTLESLAAKFVV
>NC_003910.7|WP_011041613.1|779732_781535_+|hypothetical-protein
MRTDCTGNIPFILGVTGHRDLFTSTENSPEVLKGQIRQALSFWQKKIGANTPLWLLTGLAEGADLLVAETVLALQSEGENILLLACLPMPESAFRKDFVNSDALSTYTNILERITKSDNKLFELKNPLSSREFEIAINDNEFGALRNALYLNQSLFVAKYCNALLALWDGHQSKGAGGSADAVQYKLGNTPSWPDNIIVDKNLLPASDFDGQVSGVVHHILVPRKTDSSKLTELTEFTSIEVGIGKLYSSVGQTKGKNILNDLIVHEFQLMLDEMTFYNQIAQNHPVKSNIQSDGLSSTNAIFEKSDAIAIANQSKYRNIVKAFFSIITPGFIAYELAGNYINELSGVYILIVVLLAMLGSGLLIKYVRKNNPKWQYQLARGVAETIRIREFLNLADVAPTAEPLIPRRYRENLPLLNHVIQLTEIQWWDKNYQSSPESIKSIWLDEQVKFLDSRLVLSANSVSELLYKRPRYAAHLCSKIASFSFYTAVVFGLILLMNLSLFYVVGFDFFSSFNGALMYIVQYGLMLAGIVVLWSEIAGYESTTLGYSSLKTLYERATTLFEETPDKSSKKMLLELAKEAVFEHVTWTRSEMASDLKER
>NC_003910.7|WP_011041614.1|781567_783835_+|WD40-repeat-domain-containing-protein
MTTEKVSFYQTLTDDEIAKEIVREERLDNKYRLEWGVDSSFTIYCDDEDEQKTYTRHLESIIGVLPLKHPKNEGCFVSIGLENSLQISLNQGPHLKTLIGHDERVLGLIELDDGNLVSASTDGFLRFWNTKNGKMLSEIETSLESLEQVKFFLYHDIVAIKENNSVSIWKFSGEQLVQLEGQKKQLQSAHQLSSGNWLIWTENTKPSLWTGEGKLIKTFSFSFPVFGAYCELESKQLLIKRSDSIISLFDENGTLQSEHQNNKGVVDLFDQLAKGLRETEQFISNNPDVSYFQHARNLLASKKSLFRAHDELEKQSLDFEDNATEQKVWNFFSRPIFEKIKTALKSVIKTARTKEKVLLTLIEEGDTRKTRYISKRGTFGAMAWVFIVLASTAAGAGWFLLQQPGLLESMVSENRDLLSIAQQKPEFLVYIPAVLLSVFWLLFWSKSRKHNKNANRESNNLAVLNVLLPGYYQLIENIKSYRKKLTSQIPVLQEGSRDLYQGQFIQAHIDELISGKIQELAMNECGLDKDDIIYKDQEPIILPTFSLIQDKERRSQVASKLVFENEYSFWPIKGGTLVSAVQFIQYTFLTKDKIDVFTTYYDFITNKAVGKEANAFYYKDVTNIAKKEVDRDDFWEDKSKDISATEIVLSVASGEKIRLTILNEESLSKIHQQTKDVETISPEMLMQKLEDERISIEADDDLSDEEKEDELRVVDGRIAEAKTSLFELDSSQTSNKADEAIKNIRNQLQQHKKES
>NC_003910.7|WP_011041615.1|783834_784707_+|toll/interleukin-1-receptor-domain-containing-protein
MSKVFISYSSSDRPAVKLLKEALEQLSYDVWFDQDAILPGGYYAKDIATALKDIDVFVLMTSANSIGDKVNNIAGSSEVAKEVVLAQSSSAVIIPVKLDDCWMETTTHDEFTYLLARTQWLDAGYCDSPTDFMDVAKRIDSALVSGNFKFNHDTTLDEIDKLLKQGFFGQATSRMNANAFPDIASDRVVLINSILALSARPISSLSKITVDNLVRDLVQIRNESVRPAALYLQGALSTFYYQTNAVYDPTGGLVALKNEASTLGRLKAKYVMSIAHLLPSVNQYSLQWSK

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Crispr_ID: NC_003910_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003910_3

889750-889865

Orphan

Consensus_repeat	Method
TGCCTGGACAATGAATTAGTACCAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003910_3

>merge|NC_003910|3|889750-889865|CRISPRCasFinder
TGCCTGGACAATGAATTAGTACCAAAAAGTTATCCTGGCAAGCGTGCCTGGACAATGAATTAGTACCAAAAAGTTATCCTGGCAAGCGTGCCTGGACAATGAATTAGTACCAAAAA

>NC_003910|3|3|889750-889865|CRISPRCasFinder
TGCCTGGACAATGAATTAGTACCAAAAA	GTTATCCTGGCAAGCGTGCCTGGACAATGAATTAGTACCAAAAAGTTATCCTGGCAAGCG
TGCCTGGACAATGAATTAGTACCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_003910.7\|WP_011041719.1\|881118_881943_-\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NC_003910.7\|WP_011041717.1\|880417_880750_-\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NC_003910.7\|WP_011041722.1\|882876_883515_-\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NC_003910.7\|WP_011041733.1\|896198_896597_+\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041732.1\|895844_896087_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041720.1\|881955_882258_-\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NC_003910.7\|WP_011041730.1\|891859_893221_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041723.1\|883529_883841_-\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NC_003910.7\|WP_011041726.1\|887257_888289_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041729.1\|891458_891863_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236608
NC_003910.7\|WP_011041228.1\|894215_895649_-\|replication-initiation-factor-domain-containing-protein	unknown	unknown	gnl\|CDD\|367101
NC_003910.7\|WP_011041724.1\|884820_886926_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NC_003910.7\|WP_011041227.1\|893845_894190_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375186
NC_003910.7\|WP_011041731.1\|895638_895842_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041226.1\|893584_893839_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041718.1\|880761_881037_-\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NC_003910.7\|WP_011041221.1\|889475_889724_+\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041728.1\|890001_891369_-\|zonular-occludens-toxin	unknown	unknown	gnl\|CDD\|222783
NC_003910.7\|WP_011041225.1\|893341_893569_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011041721.1\|882254_882860_-\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404

Protein	Function_ID	Function_description	E-value
NC_003910.7\|WP_011041719.1\|881118_881943_-\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NC_003910.7\|WP_011041717.1\|880417_880750_-\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	8.14546e-64
NC_003910.7\|WP_011041722.1\|882876_883515_-\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	3.41241e-125
NC_003910.7\|WP_011041721.1\|882254_882860_-\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	1.40253e-110
NC_003910.7\|WP_011041723.1\|883529_883841_-\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.31096e-69
NC_003910.7\|WP_011041228.1\|894215_895649_-\|replication-initiation-factor-domain-containing-protein	gnl\|CDD\|367101	pfam02486, Rep_trans, Replication initiation factor. Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50.	1.08854e-37
NC_003910.7\|WP_011041729.1\|891458_891863_-\|hypothetical-protein	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	0.00326713
NC_003910.7\|WP_011041724.1\|884820_886926_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NC_003910.7\|WP_011041227.1\|893845_894190_-\|hypothetical-protein	gnl\|CDD\|375186	pfam17426, Putative_G5P, Putative Gamma DNA binding protein G5P. This domain family is found in Gammaproteobacterial proteins. Members of the family are predicted to be G5P DNA binding proteins. Homologous proteins are found in pfam02303.	6.5708e-38
NC_003910.7\|WP_011041718.1\|880761_881037_-\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	1.5952e-64
NC_003910.7\|WP_011041728.1\|890001_891369_-\|zonular-occludens-toxin	gnl\|CDD\|222783	PHA00350, PHA00350, putative assembly protein.	1.11743e-68
NC_003910.7\|WP_011041720.1\|881955_882258_-\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	2.6775e-46

>NC_003910.7|WP_011041221.1|889475_889724_+|hypothetical-protein
MLIKINESEPEFVAFVESLKQHYSEATAAGATKKAIVNHVSVTKELRKTKKKLEKLEAILEEIKTIKRQQKGLQQALDILTD
>NC_003910.7|WP_011041726.1|887257_888289_-|hypothetical-protein
MNKPKISMIVGNGFSISFGYFTSLMQEWNTQAPLSWEIKCPDSDVLLIDCLPNLKLIKDSLPDESDFDIFLKLQNESFCKSLGVEVRRCLIEARHFLTISFSHLATAQIDNFRKDWPWFMWLQLHRDNLINAFSLNYDLLLETCLDELGCIYNSQQINGHGHGLPLFKPHGSVDFEIVGLDIPVRYPLNGIIDVNDMPIKRLKTSDLLYPRTQPLCIVPNEVNKYKNFQWVKEANNCFKKELNKSTHCVFIGISYFECDRQEIDEILNNLPSSAQIIIANPEPPIDFMEKLKGRPVIVWDNPHGPVNLNGSLISLKDIKTGNLLSNCFCKSGLSYQFCCGLNL
>NC_003910.7|WP_011041724.1|884820_886926_+|elongation-factor-G
MADLSKYRNIGIFAHVDAGKTTTTERILKLTGQIHKTGEVHDGESTTDFMEQEAERGITIQSAAVSCFWNDHRFNVIDTPGHVDFTVEVYRSLKVLDGGVGVFCGSGGVEPQSETNWRYANDSKVARIIMVNKLDRLGADFYRVCKQVKDVLGANPLIMTLPIGTEDEFVGVVDLLSEKAYIWDDTGLPENYEVTDIPADMVEQAAEYRVKLIETALEVDEDMLMEFLEGEMVPTIEQIKACIRTGTRDMTFFPTYGASAFKNKGIQLILDAVVDYLPSPTDVNPQPLTDEEGTPNGEFAIVSADETFKALAFKITDDRFGTLTFVRIYSGTLKKGDTILNAATGKTERVGRMCEMQADDRNELTSAQAGDIIAIVGMKSNVQTGHTLCDPKHPIVLEAMVFPKPVISISVTPKDKGSTEKMGLAIGKMVAEDPTFKVETDIDSGETILSGMGELHLDIKVDILKRTYGVELEVGKPQVAYRETITTAIEDSYTHKKQSGGSGQFGKIDYRIKPGEPGSGFVFSSVVVGGNVPKEFFPAIEKGFKGMMDTGVLAGFPVLDVEIELYDGGFHAVDSSAVAFELAARGAFRQSIPKAGAQLIEPIMKVDVFTPDDHVGDVIGDLNRRRGMIGGQEAGVSGVRIKADVPLSEMFGYIGTLRTMTSGRGQFSMEFSHYMPCPNNVAEIVIAEVKAAKIAKDAARK
>NC_003910.7|WP_011041723.1|883529_883841_-|30S-ribosomal-protein-S10
MSNQRIRIRLKAFDHRLIDQSTAEIVDTAKRTGAQVRGPIPLPTRKERYTILTSPHVNKDARDQYEIRTHKRMIDIVEPTEKTVDALMRLDLAAGVDVQISLG
>NC_003910.7|WP_011041722.1|882876_883515_-|50S-ribosomal-protein-L3
MTIGLVGRKVGMTRVFTEDGVSTPVTVIEVEANRVAQVKTVDNDGYSALQVTTGKRKASRVTKPAAGHFAKAGIEAGRGLWEFRLNENEGSDIEAGSEITVEVFNDTKLVDVTGTSKGKGFQGGIKRWNFTMQHATHGVSLSHRSNGSLGQCQTPGRVFKGKKMSGHMGAVRCTTQNLELVRVDAERNLLLIKGAVPGAINGNVIIKPAVKA
>NC_003910.7|WP_011041721.1|882254_882860_-|50S-ribosomal-protein-L4
MELSLKDASGALEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTTRGPIWRTGGVTFAAKPQDHSQKVNRKMYRGAIASILSELVRQERLVVVENFSVETPKTKELVAKLKGLELKDVLIVTKEVDENLFLSARNLYKVDVRDVAAIDPVSLVGFEKVLITADAVKEIEGILA
>NC_003910.7|WP_011041720.1|881955_882258_-|50S-ribosomal-protein-L23
MINEERLLKVLLAPNISEKATTAAEANNTVVFKVATDATKAEIKAAVEKLFEVTVEGVNTLNVKGKVKRTGARFGRRNDWKKAYVTLAEGSDIDFVGAES
>NC_003910.7|WP_011041719.1|881118_881943_-|50S-ribosomal-protein-L2
MAIVKCKPTSPGRRHLVKVVNKELHTGKPYAPLLDTKSKSGGRNNNGRITVRHIGGGHKQHYRIVDFKRLKDGIPAKVERLEYDPNRSANIALVLYADGERRYILAPKGLSAGDSILSGVGAPIKPGNTMPLRNIPLGSVIHAIELKPGKGAQIARAAGTYAQLVAKDGAYVTLRLRSGEMRKIESDCRATLGEIGNSEHMLRSLGKAGASRWRGVRPTVRGVAMNPVDHPHGGGEGKTSGGRHPVSPWGVPTKGYKTRSNKRTDKFIVRRRAK
>NC_003910.7|WP_011041718.1|880761_881037_-|30S-ribosomal-protein-S19
MPRSLKKGPFIDLHLLTKVEKAVESGNKKPIKTWSRRSMIIPTMIGLTIAVHNGRQHVPVFVTEEMIGHKLGEFAPTRTYRGHVADKKAKK
>NC_003910.7|WP_011041717.1|880417_880750_-|50S-ribosomal-protein-L22
MQAIAIHKFARGSAQKARLVADQIRGVNVEKALEILTFSNKKAAELVKKVLNSAIANAEHNEGADIDELFVKTILIDDGPTMKRIMPRAKGRADRIIKRTSHITVIVSDS
>NC_003910.7|WP_011041728.1|890001_891369_-|zonular-occludens-toxin
MATKVFHGPPGSYKSSTAMWFEIVPALRLGRVVVTNLQGIKTLEEIQRELKEVFPSTARLLRISIGNDTGMLLMRNFFHWLPIGALIFLDEIQDIYPNDKSFKASDYDYKTEGAFDDLLPQEFSEIYHEEQRKIKSNVNIEDYQDDIGESLFDERNYLRYPRTLRECFMRHRHYNWDILLATPDIKEISSFIRSVCEVAYAHSSKDAIPIPYYKRRPRILEHLPKTNGISVGKNDIVTFKKVPLDVFKLYKSTATGKSTKSGAGQSPITPSVIVGFAFVVAYLVYMVFFFFDDESIEVDEPLANSLPNAISQSPKASAAAVQVANASVRTAQKSDGEINPFSFRRASVSTVTAPNNFVALPFGATKMYINAVNTVYFNKHRVTRDYVFTAYINDEVLNVGSESLIAMGYKIFFSSDCLVELRSNNHSNYVYCEPTKPSEPFQEARGNSPIQLSLL
>NC_003910.7|WP_011041729.1|891458_891863_-|hypothetical-protein
MKLLIFVLLAFFSFDVFAAPQTGVTGFFETATIFFMSIYEFFTVIIPTAIGDFFVWLTSYLLYLKFYLMYETLVFAHEVALSFIQMININEVVNTAISNLPPDLRQAASDMRFFDALSLLIEALITRLVYQMSF
>NC_003910.7|WP_011041730.1|891859_893221_-|hypothetical-protein
MFRLLLFILIFIFSFNVSAIVTITNKIGLASAFTFDYCSGDDAQSANCAQIAPSEIAYGDGNTYYKCPLIYSSSTRIKYRLGSQCNDSGNITATLYLSYSVGCQSPIECHELANLDCSSTSRVVTGFVYTSPNVYSYSCEDFKSESDKCNDVVKNQCANNWGVKSSNYTDDGQGTTSCTGVCNDGSIPKEEDCSVYPFCDVPEPPSDLDFGSGSTGSSVDPSTTTTEDVEHDIDYEADGTTSDTSSNISSLQGDKLINEVVATRNANTKNLASTTETTNQTIVEKSDDISTTVSNSANGIIDAVNRIEKAVFDDKGIIGAVNSLGSGIDGLGDKIDGLGDELGGSYQSDFGVASFSAYDTLFINESDLTGLTDGFKASIGVENRLFINEVREKFNFTAGNSGGYQANNLDLGKWGSHDISLARFSEYFGGVGNVVYFLAALSALTIVLGGIKS
>NC_003910.7|WP_011041225.1|893341_893569_-|hypothetical-protein
MNKLVSFLKTKKVKAVAAVSAIAGSSAAVQAADYTAQIGTAVTEGSGNVTAVIAGVIGVAILGFGVGKMLGWFGR
>NC_003910.7|WP_011041226.1|893584_893839_-|hypothetical-protein
MSVCAANDGTGYLKIVAETDCTEFVLVSQSEFVELQSGSLQQMNETLHLLFAFDVEVFAIVELALIMAFLTSHFGGRVARWLGK
>NC_003910.7|WP_011041227.1|893845_894190_-|hypothetical-protein
MSIQTGIFLRGILVGTKLTKNRYIDKGGVAQENSYTEIGIEVSFVNGFDQEQKMIRTARISAEKEKDAFFIKTLSESHGALVELPVNVGDYRNVYVDSKAVLLVIEPAQQQKAG
>NC_003910.7|WP_011041228.1|894215_895649_-|replication-initiation-factor-domain-containing-protein
MKTKPTTIPCLVDALSLTWSPKELLNIKQMAKIGACIKSELIVKAKDAALNRELAKLENTKNKELLGTNAFNAHEYEAILSRYKESCSTITREYNNRRHKDLPLKSLALSDNEVSARYELRDMLKGELEVDTGIKYGDRLNNLLDNIGVDLLDVLCCGEVERFVCRLNNVFTQETFIWTVKNNPTGRFNYSYSATLYADGEQAGVICWGGKNLGCYVSFMGTGCNALDMKRLYEEIKNIPALKITRIDLAHDDYAGKHSIKRALSKAKKGLFNSGGRPACYMYVESGHLTEKMLKENFKDLKEISNESTKSTAKKTFGFIPSKGKTLYIGSRESGKLLRIYEKGKQLGDMKSKWVRWEVELHSSQRVIPLDAMVKPSEYLAATYPALNFLSVEQCKIKTLVKQATMTIEKIVENQVISTRKAINMMRVICGLSDSEIVEKFVKDIEEPDCRSSMPKRLKASVIEEWVLQQQAQTAAA
>NC_003910.7|WP_011041731.1|895638_895842_-|hypothetical-protein
MNNPNVYFQREDWGDVAIQHNGQVHHFCNLVSLIGFLQTVYGHEFNLIEVDENNYHELQRQGAFDEN
>NC_003910.7|WP_011041732.1|895844_896087_-|hypothetical-protein
MLTNNITLTDSQFESLKKDLILLSMPFVSVADYSRIKGETEVSVRQQIHKGLLPIKSKLKAREKTFINLEAIRQEAQAAA
>NC_003910.7|WP_011041733.1|896198_896597_+|hypothetical-protein
MTLNSNEIFERLLTLYETKKLNELSIKLGFKKNWGSSVKNRGSIPFEACTKACEEFNVSMDYLIYGIENKLEKIDINELKLSVTEGVFAAIQTNLITLNKDVKISHVTEAITSEIKEVCNINDESKQLKKVQ

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Crispr_ID: NC_003910_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003910_4

3874152-3874225

Orphan

Consensus_repeat	Method
GACAATGCGCTAACATGGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_003910_4

>merge|NC_003910|4|3874152-3874225|CRISPRCasFinder
GACAATGCGCTAACATGGACTTTGTCAAAGACGAATCGGATAAGTTAAAATGACAATGCGCCAACATGGACTTT

>NC_003910|4|4|3874152-3874225|CRISPRCasFinder
GACAATGCGCTAACATGGACTTT	GTCAAAGACGAATCGGATAAGTTAAAAT
GACAATGCGCCAACATGGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_003910.7\|WP_011044480.1\|3887550_3888390_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187664
NC_003910.7\|WP_011044479.1\|3886444_3887308_+\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185693
NC_003910.7\|WP_011044481.1\|3888504_3888933_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319914
NC_003910.7\|WP_101154569.1\|3867131_3867983_-\|CBM9-family-sugar-binding-protein	unknown	unknown	gnl\|CDD\|377659
NC_003910.7\|WP_011044472.1\|3875296_3876475_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_003910.7\|WP_011044466.1\|3864802_3865315_-\|dual-specificity-protein-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|350355
NC_003910.7\|WP_011044471.1\|3874464_3875292_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381087
NC_003910.7\|WP_011044462.1\|3859385_3860387_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_003910.7\|WP_011044475.1\|3878641_3882091_-\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011044474.1\|3877685_3878573_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|227625
NC_003910.7\|WP_011044467.1\|3865374_3867078_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|307945
NC_003910.7\|WP_011044461.1\|3857979_3859308_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|236610
NC_003910.7\|WP_011044460.1\|3856377_3857913_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NC_003910.7\|WP_011044478.1\|3884550_3886368_+\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|185053
NC_003910.7\|WP_011044463.1\|3860444_3861437_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_003910.7\|WP_081428776.1\|3882212_3883601_-\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185693
NC_003910.7\|WP_011044465.1\|3863369_3864734_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240539
NC_003910.7\|WP_081428745.1\|3868135_3873931_-\|carbohydrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185693
NC_003910.7\|WP_011044464.1\|3862334_3863252_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_003910.7\|WP_049758055.1\|3876682_3877651_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|227625

Protein	Function_ID	Function_description	E-value
NC_003910.7\|WP_011044480.1\|3887550_3888390_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187664	cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs. This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.91726e-94
NC_003910.7\|WP_011044479.1\|3886444_3887308_+\|family-16-glycosylhydrolase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	1.34465e-23
NC_003910.7\|WP_011044481.1\|3888504_3888933_+\|VOC-family-protein	gnl\|CDD\|319914	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.12447e-57
NC_003910.7\|WP_101154569.1\|3867131_3867983_-\|CBM9-family-sugar-binding-protein	gnl\|CDD\|377659	pfam06452, CBM9_1, Carbohydrate family 9 binding domain-like. CBM9_1 is a C-terminal domain on bacterial xylanase proteins, and it is tandemly repeated in a number of family-members. The CBM9 module binds to amorphous and crystalline cellulose and a range of soluble di- and monosaccharides as well as to cello- and xylo- oligomers of different degrees of polymerization. Comparison of the glucose and cellobiose complexes during crystallisation reveals surprising differences in binding of these two substrates by CBM9-2. Cellobiose was found to bind in a distinct orientation from glucose, while still maintaining optimal stacking and electrostatic interactions with the reducing end sugar.	1.64238e-42
NC_003910.7\|WP_011044472.1\|3875296_3876475_-\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	3.43046e-45
NC_003910.7\|WP_011044466.1\|3864802_3865315_-\|dual-specificity-protein-phosphatase-family-protein	gnl\|CDD\|350355	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins. This family is composed of eukaryotic cyclin-dependent kinase inhibitor 3 (CDKN3) and related archaeal and bacterial proteins. CDKN3 is also known as kinase-associated phosphatase (KAP), CDK2-associated dual-specificity phosphatase, cyclin-dependent kinase interactor 1 (CDI1), or cyclin-dependent kinase-interacting protein 2 (CIP2). It has been characterized as dual-specificity phosphatase, which function as a protein-serine/threonine phosphatase (EC 3.1.3.16) and protein-tyrosine-phosphatase (EC 3.1.3.48). It dephosphorylates CDK2 at a threonine residue in a cyclin-dependent manner, resulting in the inhibition of G1/S cell cycle progression. It also interacts with CDK1 and controls progression through mitosis by dephosphorylating CDC2. CDKN3 may also function as a tumor suppressor; its loss of function was found in a variety of cancers including glioblastoma and hepatocellular carcinoma. However, it has also been found over-expressed in many cancers such as breast, cervical, lung and prostate cancers, and may also have an oncogenic function.	2.14236e-36
NC_003910.7\|WP_011044471.1\|3874464_3875292_-\|response-regulator-transcription-factor	gnl\|CDD\|381087	cd17532, REC_LytTR_AlgR-like, phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR. Members of the LytTR/AlgR family of response regulators contain a REC domain and a unique LytTR DNA-binding output domain that lacks the helix-turn-helix motif and consists mostly of beta-strands. Transcriptional regulators with the LytTR-type output domains are involved in biosynthesis of extracellular polysaccharides, fimbriation, expression of exoproteins, including toxins, and quorum sensing. Included in this AlgR-like group of LytTR/AlgR family response regulators are Streptococcus agalactiae sensory transduction protein LytR, Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR, Bacillus subtilis sensory transduction protein LytT, and Escherichia coli transcriptional regulatory protein BtsR, which are members of two-component regulatory systems. LytR and LytT are components of regulatory systems that regulate genes involved in cell wall metabolism. AlgR positively regulates the algD gene, which codes for a GDP-mannose dehydrogenase, a key enzyme in the alginate biosynthesis pathway. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	9.68277e-50
NC_003910.7\|WP_011044462.1\|3859385_3860387_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.17053e-114
NC_003910.7\|WP_081428776.1\|3882212_3883601_-\|family-16-glycosylhydrolase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	7.06957e-99
NC_003910.7\|WP_011044474.1\|3877685_3878573_-\|glycosyl-hydrolase	gnl\|CDD\|227625	COG5309, COG5309, Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism].	1.70016e-40
NC_003910.7\|WP_011044467.1\|3865374_3867078_-\|glycosyl-hydrolase	gnl\|CDD\|307945	pfam02055, Glyco_hydro_30, Glycosyl hydrolase family 30 TIM-barrel domain.	8.11386e-61
NC_003910.7\|WP_011044461.1\|3857979_3859308_+\|MFS-transporter	gnl\|CDD\|236610	PRK09669, PRK09669, putative symporter YagG; Provisional.	5.12612e-150
NC_003910.7\|WP_011044460.1\|3856377_3857913_+\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	3.83863e-102
NC_003910.7\|WP_011044463.1\|3860444_3861437_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.31754e-178
NC_003910.7\|WP_011044478.1\|3884550_3886368_+\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	5.26559e-91
NC_003910.7\|WP_011044465.1\|3863369_3864734_+\|MATE-family-efflux-transporter	gnl\|CDD\|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.10979e-84
NC_003910.7\|WP_081428745.1\|3868135_3873931_-\|carbohydrate-binding-domain-containing-protein	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	2.91984e-80
NC_003910.7\|WP_011044464.1\|3862334_3863252_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.41251e-28
NC_003910.7\|WP_049758055.1\|3876682_3877651_-\|glycosyl-hydrolase	gnl\|CDD\|227625	COG5309, COG5309, Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism].	1.92707e-22

>NC_003910.7|WP_081428745.1|3868135_3873931_-|carbohydrate-binding-domain-containing-protein
MMNKIIKSLALVGMFAVAPQSLAMPNTVGSVQSNIGTDNTQKISSVDKKNEKIIKKANKQIRRSEKEINKLEKMIVKEEGKIAKYEEKIEKQEEKIAKAKGKNKENKIAKAMNEIEKSNRKIERSIEKITQALSKIESEKEKISVAKAIIEDLNTPVLQDSDNDGVVDDFDSCPNTFAETLVDANGCSLGQLDSDNDGVNDDIDQCPDTAVDAVVDTNGCLSIPPTSDNGLPIINFEVGGTGESFSWNVFENVDNPAVQFVTNPESSGVNSSTTVAMFTARVDGAPWAGAETAHGNIGPITLDATNSIIKIMVYKTVISDVGLKLAIANGGAQPEIKVANTLINEWEELTFDFSGNIGLFESINVDQIIVFPDFNLAGRAQENVVYFDNITFNGNGADTGGGDTGTGGDGDTSGTIETITFEASGTGTAYSWNVFENLDNPAVEIVTNPDATGTNTSTSVAKFIARQGSAPWAGAESAHGDFGPLTLDASNSIVKIMVYKTVISDVGLKFSIASGGAQGEIKVANTLVNQWEELTFDFSGNIGAVESINIDQIIVFPDFDFARSQENVVYFDNISFSDGTGGGDTGTGGGDNGTGGGDTGTDGGDTGTEGELLTNSSFDNGTEGWSGGTVIVEGDNNIFTADVAAPGNPWDVNLSQVMTLVPDATYVLSFKAKASVARTIIAGLGLAHDPWTNTTETATLSTQWQSFTYTLTTSGFGDDNSRALFDMGSEAGTVYLDDISVILQNSDGGDTGTDGTAPSEDWSMVWNDEFDGSDIDLSKWEHEVNCSGGGNNEKQCYTSNPENSFVENGALKIVAKPESGQALPYSSARLRTKYKGDWKYGRVEVRAKPPRGQGSFPAIWMLPTEDVYGGWPHSGEIDIFESVNLKTINNQGIEEAGVHGNLWYGRSWPNQSNSGAHFSLPGEANPADGFHIYAIEWEEGEIRWYVDGYLYQTQLRSQVNIDSDGDANGLLHRGWFADYENEFHWDNSPFNQDFHLILNFAVGGSWSENVNNGGIDASAFNADNAFEFDYVRVYECSVDPITGQGCASVRDGYLDPISEGGSLVDGDAPTPIKPSTGEAIDLVVFDNANNESWPAWSSNEETTFAVVTDDVDHDQVVEFSMGAAPAVVGFNTSQADIPVAYDGSPMLNNGWLEFDMKLVTPPNNANANWNLKVEQGGTTTEALIQISTPTAEWQHYAISLNDLSNAGLELNGIDVIMIFPDWAQGEGAVFRVDNITILQGENTGGDSGSGGDTGDGDSGPVAGEEILSNGSFDNGTEGWIGAVAVNTEGDNTFYQADIAVAGNPWDVNLSQIMTLIPGETYVLSFKAKASIARSMIAGLGLNSDPWTNVTETVALTTEWQTYNYVFTIAGFGDDNSRVLFDLGAEAGSVYIDDVSVSIQANTDGNTGGGDTGGQVVDDEFVIISSTDDTDVSLTPDTIGEWSTGTVIQADVTFDGLMGWELTSSANSPEQGNWGTVLAFQNGILGDFSLFNRVELTLATSGGYDGGFKVAISANGVSKEISLPLDQSIATWQTISIDAADIPLNLSSIDWIAVYGIGGQTGVSTINVTDFSLIKNEAIAFDSETNDDFVFISSDADITSDLIVDDDNNSAAGNIIFGEWSTGTAISEINYSGLDAIQLTAGGGWGAVLALQGDISDGVNVDNYDVDMANYTNIKFKVASQGTFERYALSIVSKVGANETAQEVSFSLANPADWNSIDIDLAQYGVNLSTVNQMAVFGVYAGGSASQKIYITDMVLYDTGKVTPAKESSDDKFVFFSSSGESSDMIFDGDDSAHNGNTTISEWSTGTTLTSDVVYNGLNAFELTKGAGWGAVLALMGDTYGGVQEYKLDVAKYSTINFKIAAQGAFSAYFIDFIVDGAEFKVPVTVNSNWTEVSINVADIPLNLSKITQIAIFGEGGGVGNKIYITDLNISK
>NC_003910.7|WP_101154569.1|3867131_3867983_-|CBM9-family-sugar-binding-protein
MMNHQVVNFRDCLGDELPLKERIIMTKIKVLNVSLTTLFMLFVFQAHSAYSKESHAPERTEYFAPYAGKAIKVDGIADESIWQSAKWQNLDQRWLGPEFSKEDFQGRYKVVWSKSKLYILTEIVDDILIDTHRDPLTQYWDDDTLEIFLDEDFSGGDHQYNHNAFAYHMSLDNQAIDIGTNKLAQSYSHHVESRWLQQGNKLFWELGIEIYQDNYQDVLQGKDDNNKAIELFAGKVMGLMVAYCDNDGSELRENFIGSESAAGKSPDRGWKDAGMFGKLILSK
>NC_003910.7|WP_011044467.1|3865374_3867078_-|glycosyl-hydrolase
MKNKAILIGLISSITLTGCMFQDQGSQVNNKTKEISYHLSTTSEILLTSEAGAKVSPQPNLTFQQGKAQGKVITIRPDIIKQNILGIGTSFTESSAFVLAHLSKEKRAEVMENIYGEKGANFSIARTHIGATDFAVDGKYSYAPVKDDVALSSFSIAVDQDGFKQQDHAGIKDEQFDLLPMIKQAYEIKSKQSDKDLRIVASAWTAPPWMKDIEDYYIKPTAKNNHQGTGGELKQQYRATYADYLIKYLDAYKKEGIDIWGLTPVNEPHGNSGQWESMHFTPKTQSAFIKDHLGPKLKVSAHEQVKLLIYDQNRDEMEHWTDEILADKETAQYVYGTAVHWYESTNKVNEEVFDRVHNKFPEFSIIHTEGTIDDLGKDAPEGILDPIRFKESNWFNNDNFWWNENATDWAYTATWAPKPEEHPIYTPVHRYARNIIVSLDHWLEGWIDWNIVLDSNGGPNHVGNFCGAPIMIDTETGEVYYTPIYHVLAQFSRTIRPGDKALQVETQLAGLDSDALHASAAMSKSNLVSTQLLNTTKAAINFSLQIGDQFVEVSIPANSVQTIQAQL
>NC_003910.7|WP_011044466.1|3864802_3865315_-|dual-specificity-protein-phosphatase-family-protein
MNIHPFETLALSNGAKLLFTPCPGTKAVNLEQSILQLKQQGVSMLLTLMFDKEMLENNAIKLPLLCHKYKIQWLQLPIIDDEAPQEAFHQEWQKKKDRILNEIKNKGVVAVHCKGGTGRTGTVISLLLLQLGWSADKIKQEVQLIKPKALRIQKQINYLNSQLKNSADKF
>NC_003910.7|WP_011044465.1|3863369_3864734_+|MATE-family-efflux-transporter
MSNNEPSSLKQSIKLAWPISLQSILVTMLGMSDIMMVGHLGDTAVASVGLGNRIQFVFLIILAGLASGVGTLSAQHFGAGQIGVIRQIIVKTLVIAAGILLPILLITFLFAGNIMGIATTDPSVINTGTSYLWLTMPSLIFVVVVMIFENALRGLGQVIFPMFISIIAIITNIILNYWLIKGGLGIEPMGVIGAALATLLARALHALLILTYLAKVKHSIFPTTFFCADFYNKQAWTKLLTLVWPMMLSFGVWSLGTFVYQLIYGRIGTQELAVMSLLAPIEGLLVSFFFGFASACAILVGQRLGKNEFSNAWSLAKNYAISAPIITFLLALILLQYQYLVFMPFSNLSSETITLSQEILVLICFGTCLKVFNMTIAMGILRAGGDNKYCMFIDISGMWIISIPLTFMAAFYFMLPLYWVALIAYSEEIIKAVMFIFRMKTRHWLKNLTAESMA
>NC_003910.7|WP_011044464.1|3862334_3863252_-|AraC-family-transcriptional-regulator
MWQDILNIHPDCIEDFINFDKLPGQAASLIAFAGMSYLQTEYKIGKTGKGNICLNNENNSGHVHYLISTHAGEGKIKLGNNEYLVKPGSIVLLPAGTPFLYELSGEYWEMCWLLLHDCSEYKFVHQLHPSVYSSINAERLYQTMSLIREFQHGESIYQSDIILRLVEVLVYQIAQTLNMGQQLTKQQQKFHSLIRRVNKQLQLSWTVKQLAAEMHMSEPHFFRLCKKEMGMTPIKLLTHTRLEYACYLLRYTQYNLDQIADTVGYGDSASFAHRFKKDYGLSPGRWRKEQINNFQSNDIENGEKR
>NC_003910.7|WP_011044463.1|3860444_3861437_+|glucokinase
MKNSQDTQVINLVADIGGTNIRLAITDKDNNINEIKTYQCKDFPHLSNVIYHYLKENGLLNSQVNACLAIACPVDTDSISMTNLPWKFSQKQLKEELKLHSLTLINDYTAIAMAIPLLSDKQKVKIGHGEAENKQPIAVCGPGTGLGVANLVNINNHWYCLGGEGGHTDFAPVDELDVKIFQQLKTTKKRLSYEQLLSGYGLEQIYQALVIINNQEATNAEQSKLSAKEISTQAIAGTCPICQQALSQFCKILGSFSGNLALTTGSFGGVYIAGGIVPRFIDYLKNSEFRARFETKGRMSHLNEQIPTYIITESQPGLLGAAAYLNQVFP
>NC_003910.7|WP_011044462.1|3859385_3860387_+|LacI-family-DNA-binding-transcriptional-regulator
MATIYEVSKLARVSLATVSRVINKSPQVSDKTRQKVMDAMAELGYRPNSIAQSLASNRTNSVGILVSELHGPFFGQMMAGIESELRAAGKHVIITTGHSEEDKEKDGIEFLISRNCDAIILHVEAVSDEYLIDLCKGHTPVYLMSRYVDEISENCISLNNELGGYLATQSVIELGHSAIAYIGGPQFKADSKDRLVGHKRALAENNISFNDTLYFEGDFKEKGGSDGLKYFNESNKGFSALICANDEMASGAITYAREQGLSLPRDLSIIGFDNIIFARHTYPKLTTIDNPVNSMGHMTAKLVLKNIYQQKNISITHFFEPTLITRDSIISKT
>NC_003910.7|WP_011044461.1|3857979_3859308_+|MFS-transporter
MISVREKIAYGLGDTASNIIFQTVMMFLLLFYTDVVGLSPAVVGTMFLFVRLIDAVTDPIMGNLADKTRTKWGQFRPYLLWLALPFALISILAFTTPDLTGNNKVIYAFVTYTLLMIAYTAINIPYCGLGGVITADAKERVTVQSYRFVFGMLGGVIVAGATMPMVEWFGQGDTAKGYQYTMVAMSSLGVVLFLLCFLGTKERVKPPENQDSSMKENLQSLWKNDQWRILCIASFYLLTGQVLRLTLAVYYVKYFLGREDLITSFLTLGVVASMIGCAVAQPLAKRVCKIKAYIALQSLSAVICLASFLISPNQIILAFVAFISWKFFLDMASPLLWAKMADTIDYGHKKTGIRVTGLVYSGVIFFIKMGIAIGGALAGWLLTFYGYQADLEQSEATKQGLLLSFTVLPALGSFAVAWVMRKYTLTEQRVVQIQVELSTETK
>NC_003910.7|WP_011044460.1|3856377_3857913_+|MFS-transporter
MTKLPFYEKVGYAMGDAAANLVWRGALAYLAVFYTDTFGLTAAAAAMLFLVVRLSDGVTDIIMGMIGDRTNTRWGKFRPWILWSTPFLALFMVLSFTTPDLSYSNKLIYAYVTYIGLTLAYTVNNVPYSALMGVMTPSDTERTSLSGFRFAGAFAGGLLVMGFLPDLVAYFGEGNDAIGYQYSMYLFAAILIALMLITFASTKERVTPNTDESSNLKSDLLDLSKNLPFIVLPLLAMTLFFYYRDIYSGIFFVIIMGSMLILIKRLIKKTPKNLGGTQRDMVDLLTNKPWLILLGIGFLTMMFNGIKYGTIAYYFKYQVGDELMAGKYFIALLLVSILGALSTSYLSKKLGKRQLFIVSLLLSGLLTTAFYWVPKGNVSAIFALGCSAEFFAAIMPTLFFTMLGDSADYSEWKNGRRATGLIYSAGTFVQKTGGGFAGALVLVVLAGYGYDGMDKSTIASSLPGMQLLMSWIPASFAFAGAALMIFYPLTCKQNQQIGNELILRRTPLAAA
>NC_003910.7|WP_011044471.1|3874464_3875292_-|response-regulator-transcription-factor
MHKLRTIIVDDEPLALNLLRAKLNKVPEIEIIAECKNGREAIEKTMDLAPDLIFLDIQMPGVDGFGVIKKLQSDIVPLVIFTTAFEQYALDAFDVHAVDYILKPIDEERITRAVSRAIVRFETEEETEHKSRIIGAIDTINERENSASSSQSSQGQSSLGQNKGNLEHKIIIKDRDDITLLKQADIEWVDAAGDYCCVHAQGVTHIKRSTLKNLLDDLDPSIFKRVHRSTIVNLNYIQKVIPHTKGEYFLKLGEYDQVKVSRNYRDVIKDFLSDW
>NC_003910.7|WP_011044472.1|3875296_3876475_-|histidine-kinase
MSEHFLQQKYNSISENPIYLFWFLQFCFWSFVSLISLVSLTLWYVQIDVAHLNHTFLQSFVGVVFSLPLYWAFMRCWNTSIFIRVFVSITSVLLISFIWTVIRVELYIRLTGTDEIWTQFGGWYFSSIFIYFCWTGFFHGIRYYQLLQFEHEIMLKKEAEAKTEQLKRLSAQTVARDAKIKMLRYQLNPHFLCNTLNAINSLIECELPEKAQLMTVQLSKFLRYSLDNDPDTKIALEFELKALELYLEIEKTRFGERLQLDFQISEAAKAAFIPSLLLQPLIENSMKHVIAQNEEGGVISLSADVIDNMLVLELSDTGSAKRVDINKIKSKTGRGVGLRNIDERLKALYTDNYVYNLNVRPSGGLKTTIKLPLDSQGEPDIVNQAYNSMKVC
>NC_003910.7|WP_049758055.1|3876682_3877651_-|glycosyl-hydrolase
MNLSHANAICYSGYREGQNPREGIYPTYDEVKEDLLILASNWNYLRIYDCGPHAEIVLDVIRIEALHFKVMLGVDMAAEMSNPHCPWGAEFSEETLSANRQNNCNEIHKMIELSLKYDDIVFSVSVGNEASVEWTDHMVPVDRLVNYVRQIKKEIKQPVTFCENYVPWTYKLEPLVAELDFISIHTYPAWEFRTMEDALEYTKQNYYSVANHYPDKPVIITEAGWTTASNGRGIEPWNANEDLQAHYYEQLLAWTTQEKILTFVFEAFDEPWKGSSDPLEPEKHWGLFYVDRTPKLVMKDIFPRKTTHADTIVNINTKDEVA
>NC_003910.7|WP_011044474.1|3877685_3878573_-|glycosyl-hydrolase
MSSKYNKYMSLAGVNFSNLSVDELRALASNILTEKIHGISFSPYVEGQGPGTQIEAEQISERLNIIKPNINWVRSFSCTEGNEKIPAISKANGLNTMVGVWLDSDLENNEKELANAICAATEGHVDILAVGNEVLLRGDLSEEQLLDYINRAKQALPNVEVGYVDAYFEFEDYPRIADACDVILANCYPFWEGCSADYALLYMKDMYRRAVKAGKGKRVIITETGWPNVGTAERGAEPSYENALKYFINTYLWAEEDGIEIFYFSSFDETWKVADEGDVGAYWGLWDKDGKMKYV
>NC_003910.7|WP_011044475.1|3878641_3882091_-|hypothetical-protein
MKNCKTDNNQTTGEFIMLDDERYYAINNVNNMAPFFISVISNSDHWLFVSSTGGLTAGRVSPETALFPYITVDRIHESDLHTGCKTLLRVDHKGEIVNWEPFNREHDNRYKITRNLYKNLLGNKLCFEEINNDLQLKYKYTWATSEEYGFVRQCELVNLSDKPANVELIDGFQNILPAGTPRFTQTNSSNLVDAYKWTELDESSGLAFFTVYSGITDRAEPCESLKTNTVFCSGLEQSKILLSSEQLANFRTGMPIKQETHKRGIRGAFLVNSTITLEPLKNKTWQFVANVEQSQSQATELRSQLSSTSTLENNILSSIAQGSDGLARIMATADGFQVTAEENVSVHHYANVQFNVLRGGAFDEHYQISSKDFSSTVNLFNSDVYLRHQEFFRCLPESINIEQLLTLVKQQEDQQLERLCYEYLPIFFGRRHGDPSRPWNQFAIKLKDDNNNSLLTYQGNWRDIFQNWEALTFSYPKFIENVIAKFVNASTIDGYNPYRITKEGIDWEVEEPDDPWSYIGYWGDHQIIYLQKMLELSKAFHPDKLSELLRQPLFSYANVPYRIKPFDALVKNAKSTVTYDEELAERIEKRVSKIGADGKLMLDSSGEVYQVNLLEKLMVPLLCKLGNLVIDGGIWLNTQRPEWNDANNALVGQGVSVVTLYYLRRYVCFLQKLLAKESESTIISKEVNDWIVETANALKKVRPLLNNAPISADERYQCASELGQASSRYRETIYSQEAFSGKMLQPIEQIKSMLEDALAAIEHTIHTNEREDGLYNAYNLLAFEQESLTIDDLYPMLEGQVAALSSGAFSSEKVISVVEALFKSDVYRKDQDTFMLYPDRKLPSFLQKNCVDTNKVQTNPLLKQMLREQDERIILQDSDGVYRFNADLTNGDDLMTQLDALSGVYGDLVEMSRSPLVAIYEEVFNHQEFTGRSGGMFGFEGLGCIYWHMVAKLLLAVEENFFTAVDNGEDEGTCSHLGKLYYRVREGLGFNKTPSEYGAFPADPYSHTPKHAGAQQPGMTGQVKEEILARFGELGIRVKAGTVQFQTNLLRPCEFVKEVTPFTYLDVDDNWQEITVPESGLAFTWCQVPIVYQVSDREESTLTITWEDGRQQILNQLTLPEKESSNLFLRNGHIRQISLNLNSTQLFSE
>NC_003910.7|WP_081428776.1|3882212_3883601_-|family-16-glycosylhydrolase
MSAILVLCACTSEESIKTIPATKQSSQLSTENAVKEKSNSHAFNRNIVWAVNIGGEQYQGSDGITYQTDSLVLGDNKGTIFEAIKGSQDSALFQSYRFGDLTIQQPVENGSYEVTFKFAEPENPAIGERVFDVYAQGQLVIDELDIKLARDGKNNSELVRAVHDVTVTDGLLNIELKASKGQAILNALVVRKTTTTSVDIQTSNDWELVWNDEFDYEGKPDPNKWSYDIWPAGKVNDEDQTYTDLLENVQVKDGNLIITAHKEDYGNAKYTSGRIHSQGKGDLLYGRVEVRAKLPKGQGTWSAIWMLPSDPFKYETTCSQDEDWQGNSTCDAWPNSGEIDIMEHVGYDMQTIHGTVHNKAYYWVNSEQRKASFEGETVDQAFHVYSIEWTPEHIIVFFDETPYFFYSNESTGWEAWPFDHPYHVILNLAIGGSWGTAGGPIDDSIFPVSMEVDYVRVFKPLP
>NC_003910.7|WP_011044478.1|3884550_3886368_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein
MKTLWLLILSLVIFGCTTFGTNNTKVDVNVICKWGTQQFDLCQYKNQEQMIDALLLAMVLDEKIGQMTQSVWHNNVSPETIRDKAIGSIIHTEGPTPGPNAMDWVNKFNEFQASALQTRLGIPLLIAVDAVHGQNTFEGAVIFPHNIGMAATRNLNLIKQAAQITALEVAGTGFNWTFSPCIAMPQHEHWGRVYEGYTEDRDLTTAAVIASVQGHQGTSLAHRDTVAATAKHFIGDGATDGGVEGGNAIMTDQVMREHYLPPYTAAVNEGVASIMVGFNSYNGHNMHQHTHLVTDVLKGELGFEGVVVSDWNGGLRFGDPHTVINAGIDIAMQPGNHNEFMAKLKASVFDQTVPMSRIDDAVRRILTMKFNLGLFSDPFAKKEFAESVGSPAHRAVARQAVRESLVLLKSDNDALPLSSSDSIAVIGSHGNNSGLQSGGWSIHWQGQAESYRGATTIFDGIKAQGTQVEYAEHGCYPDMPASKAIVVVGEAPYAEALGDSDELWLSDAHKKLITGCKNLGKKVIVILISGRVLAISEDLDKSDAFIAAWLPGSEGAGVADFLFATNGFKPTGKSPYSWPVAVTDIPLAPNAEHALFKFGYGLQDY
>NC_003910.7|WP_011044479.1|3886444_3887308_+|family-16-glycosylhydrolase
MKSTLPLIPLASALLLIACSGEVTTNESTKQQSTVSNWHVDFFDGFDTFNPDNWQDQRIWVNNETQCYVPDNQFGTREVSNGSIKLKVIDTGEKRSCDNFDKHGKQHPDTQYVAGRIASKNLKEFVKGKWTARLKVENSGQSGMFPAWWLLGAQNNEPPVQQPDENVCWPMVGSGEIDIFEHHSDGGPDHYAARAIKSNGKCGDGDWQALMLVQEAKLDEYHDYSVEWVGDDVIFRLDEVEVYRLPGEADKLAEPFFAILNFAKINDSAMTANWVMEVDWVKHEAWY
>NC_003910.7|WP_011044480.1|3887550_3888390_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKPLFGKVALVTGASRGIGKGIALSLGEAGAKVYITGRTVEEGKSASCLSGTIHQTVEEVIKLGGECVAIQCDHSIDSEVEAAFNRINAENKRLNILVNNVWGGYEHYTDGTEFWHENGFWTVPISRWDAMFHSGVRANYISSVLAVPLLMQQEDSLIITLSFFAAQRNDKGVAYGTAKAASDHMVACMAEELREHNIAAVSLYPGLVRTESVMKAAKHLDLSNSESPQFIGRAVVALASDTDIMKKSGRVLVAAKLAQEYGFTDINGEQPRPLTAQDV
>NC_003910.7|WP_011044481.1|3888504_3888933_+|VOC-family-protein
MEPRISIITLGVKNLKKSFDFYTTLGFPSSRNPEDGIIFFKTSGVCLALYPLDKLAEDVFPSLNSNPSGFSGVTFAHNTRSKVEVDSILELAKTAGGNIEKPAQNVFWGGYSGYFSDPDGYLWEIAFGDCWEFNEDGSLIIK

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Crispr_ID: NC_003910_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_003910_5

3967485-3968398

Orphan

Consensus_repeat	Method
ATATCATCTGGNTCTGTTAC	CRT

14 spacers

The CRISPR arrays of NC_003910_5

>merge|NC_003910|5|3967485-3968398|CRT
ATATCATCTGGGTCAGTTACCTCTGCGGTATCATTGATAGAATCAAGTAATGCATCGATATCATCAGGGTCTGTTACATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCAATATCATCTGGATCTGTTACCTCTGCGGTATCATTGATAGAATCAAGTAATGCATCGATAACATCAGGGTCTGTTACATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCAATATCATCTGGATCTGTTACCTCTGCGGTATCATTTATAGAATCAAGTAATGCATCGATATCATCTGGGTCTGTTACATCAACTGGCTCATTCACTGATTCACTTACTAAATCAAGCAGCGCATCAATATCATCTGGATCTGTTACCTCTGCGGTATCATTTATAGAATCAAGTAATGCATCGATATCATCTGGGTCTGTTACATCGACTGACTCATCCACTGATTCACTTACCGAATCAAGCAGCGCATCGATATCATCTGGATCTGTTACCTCTGCGGTATCATTTATAGAATCAAGTAATGCATCAATATCATCTGGGTCTGTTACATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCGATATCATCTGGATCTGTTACCTCTGCGGTATCATTTATAGAATCAAGTAATGCATCAATATCATCTGGGTCTGTTACATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCGATATCATCTGGGTCTGTTACCTCTGCAGTCTCATTGTCTGGTTCACTTACCGAATCAAGCAGCGCATCAATATCATCTGGGTCCGTTACCTCTGCTGGCTCATTGTCTGAATCACTTAGTGAATCAAGCAGCGCATCAATATCATCTGGGTCCGTTAC

>NC_003910|5|1|3967485-3968398|CRT
ATATCATCTGGGTCAGTTAC	CTCTGCGGTATCATTGATAGAATCAAGTAATGCATCG
ATATCATCAGGGTCTGTTAC	ATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCA
ATATCATCTGGATCTGTTAC	CTCTGCGGTATCATTGATAGAATCAAGTAATGCATCG
ATAACATCAGGGTCTGTTAC	ATCAACTGGCTCATTCACTGATTCATTTACCGAATCAAGCAGCGCATCA
ATATCATCTGGATCTGTTAC	CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCG
ATATCATCTGGGTCTGTTAC	ATCAACTGGCTCATTCACTGATTCACTTACTAAATCAAGCAGCGCATCA
ATATCATCTGGATCTGTTAC	CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCG
ATATCATCTGGGTCTGTTAC	ATCGACTGACTCATCCACTGATTCACTTACCGAATCAAGCAGCGCATCG
ATATCATCTGGATCTGTTAC	CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCA
ATATCATCTGGGTCTGTTAC	ATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCG
ATATCATCTGGATCTGTTAC	CTCTGCGGTATCATTTATAGAATCAAGTAATGCATCA
ATATCATCTGGGTCTGTTAC	ATCAACTGGCTCATTCACTGATTCACTTACCGAATCAAGCAGCGCATCG
ATATCATCTGGGTCTGTTAC	CTCTGCAGTCTCATTGTCTGGTTCACTTACCGAATCAAGCAGCGCATCA
ATATCATCTGGGTCCGTTAC	CTCTGCTGGCTCATTGTCTGAATCACTTAGTGAATCAAGCAGCGCATCA
ATATCATCTGGGTCCGTTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_003910.7\|WP_011044563.1\|3980042_3980312_-\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NC_003910.7\|WP_011044548.1\|3961597_3962080_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|182773
NC_003910.7\|WP_011044547.1\|3959909_3961427_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NC_003910.7\|WP_011044550.1\|3962812_3964126_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NC_003910.7\|WP_011044551.1\|3964185_3965043_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NC_003910.7\|WP_011044546.1\|3959171_3959771_+\|YIP1-family-protein	unknown	unknown	gnl\|CDD\|369140
NC_003910.7\|WP_011044559.1\|3977238_3977535_-\|YfcL-family-protein	unknown	unknown	gnl\|CDD\|378085
NC_003910.7\|WP_011044552.1\|3965206_3965986_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_003910.7\|WP_011044556.1\|3972670_3973882_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NC_003910.7\|WP_011044555.1\|3971293_3972475_-\|4-phosphoerythronate-dehydrogenase	unknown	unknown	gnl\|CDD\|240635
NC_003910.7\|WP_011044549.1\|3962170_3962785_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|236940
NC_003910.7\|WP_011044560.1\|3977734_3978898_-\|ATP-NAD-kinase-family-protein	unknown	unknown	gnl\|CDD\|225740
NC_003910.7\|WP_011044561.1\|3978884_3979454_-\|elongation-factor-P-hydroxylase	unknown	unknown	gnl\|CDD\|377299
NC_003910.7\|WP_011044544.1\|3957741_3958518_-\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	unknown	unknown	gnl\|CDD\|114868
NC_003910.7\|WP_049757919.1\|3958646_3958955_+\|hypothetical-protein	unknown	unknown	unknown
NC_003910.7\|WP_011044558.1\|3976347_3977178_+\|type-IV-pili-methyl-accepting-chemotaxis-transducer-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379327
NC_003910.7\|WP_011044557.1\|3974139_3976188_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|234978
NC_003910.7\|WP_011044554.1\|3970215_3971235_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_003910.7\|WP_011044562.1\|3979699_3980032_-\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NC_003910.7\|WP_011044543.1\|3956896_3957643_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420

Protein	Function_ID	Function_description	E-value
NC_003910.7\|WP_011044563.1\|3980042_3980312_-\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	5.26204e-36
NC_003910.7\|WP_011044548.1\|3961597_3962080_-\|CvpA-family-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	2.73525e-66
NC_003910.7\|WP_011044547.1\|3959909_3961427_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NC_003910.7\|WP_011044550.1\|3962812_3964126_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	1.57709e-138
NC_003910.7\|WP_011044551.1\|3964185_3965043_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NC_003910.7\|WP_011044546.1\|3959171_3959771_+\|YIP1-family-protein	gnl\|CDD\|369140	pfam06930, DUF1282, Protein of unknown function (DUF1282). This family consists of several hypothetical proteins of around 200 residues in length. The function of this family is unknown although a number of family members are thought to be putative membrane proteins.	1.79228e-33
NC_003910.7\|WP_011044559.1\|3977238_3977535_-\|YfcL-family-protein	gnl\|CDD\|378085	pfam08891, YfcL, YfcL protein. This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli.	1.84672e-23
NC_003910.7\|WP_011044552.1\|3965206_3965986_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.65056e-146
NC_003910.7\|WP_011044556.1\|3972670_3973882_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NC_003910.7\|WP_011044555.1\|3971293_3972475_-\|4-phosphoerythronate-dehydrogenase	gnl\|CDD\|240635	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains. D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	8.10422e-177
NC_003910.7\|WP_011044549.1\|3962170_3962785_-\|SPOR-domain-containing-protein	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	1.08933e-29
NC_003910.7\|WP_011044560.1\|3977734_3978898_-\|ATP-NAD-kinase-family-protein	gnl\|CDD\|225740	COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only].	2.12125e-84
NC_003910.7\|WP_011044561.1\|3978884_3979454_-\|elongation-factor-P-hydroxylase	gnl\|CDD\|377299	pfam04315, EpmC, Elongation factor P hydroxylase. This family catalyzes the final step in the elongation factor P modification pathway. It hydroxylates Lys-34 of elongation factor P. Members of this family have a conserved HEXXH motif, suggesting they are putative peptidases of zincin fold.	5.42968e-104
NC_003910.7\|WP_011044544.1\|3957741_3958518_-\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	2.25927e-99
NC_003910.7\|WP_011044558.1\|3976347_3977178_+\|type-IV-pili-methyl-accepting-chemotaxis-transducer-N-terminal-domain-containing-protein	gnl\|CDD\|379327	pfam13675, PilJ, Type IV pili methyl-accepting chemotaxis transducer N-term. This domain is found on many type IV pili methyl-accepting chemotaxis transducer proteins where there is also a HAMP, signature towards the C-terminus.	2.02527e-11
NC_003910.7\|WP_011044557.1\|3974139_3976188_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|234978	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC.	0
NC_003910.7\|WP_011044554.1\|3970215_3971235_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NC_003910.7\|WP_011044562.1\|3979699_3980032_-\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	6.68974e-30
NC_003910.7\|WP_011044543.1\|3956896_3957643_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.41951e-137

>NC_003910.7|WP_011044552.1|3965206_3965986_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRYALGIEYDGKNYCGWQRQNNVITVQEKLEKALSKIADEKIEVVCAGRTDTGVNATNQVIHFDTEKKRKDTAWTLGVNTHLPSDVAVAWVKKVDDDFHARFSATARNYRYIIYNKPLRSAILSHGISHCHFALDENLMQQGADYLLGKHDFTSFRTVHCQSHSAVRTIKHCRVTRQGDYLVVDIKANAFLHHMVRNVVGSLMRVGQSQETPHWMKEVLLAKNRCVAGVTAPPEGLYFVDVDYPENFELPKSRLGPLFL
>NC_003910.7|WP_011044551.1|3964185_3965043_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MSWIEKILPKAKTTQKSSIPEGVWSKCSSCNAVLYKAELERQISVCPKCDHHMRISARKRIDSFLDHDNRMELGEEFEAQDILKFKDSKRYKDRLSAAQKNTGEKDALVVMKGELHGMPVVVAAFEFAFLGGSMASVVGARFVKGVEYCLEHNLPFICFSASGGARMQEALFSLMQMAKTSAALAKMSEKGLPYVSVLTDPTMGGVSASLAMLGDINVAEPKALIGFAGPRVIEQTVREKLPEGFQRSEFLLEKGAIDMIIDRREMKITLARMLGKFMGQTSVVS
>NC_003910.7|WP_011044550.1|3962812_3964126_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MSKYNSSHYQDLTNLDQWLYYLENLHSTEIDLGLSRVGKVAERLAINLNFAKVITVAGTNGKGTTCAFIENALLNSKELASPRGVAVYSSPHIERFNERLRINKQDVEDQALINAFKRIEVAREDISLSYYEYTTLAALLVLMEAMPSFIILEVGLGGRLDATNIIDADIAVITTIDLDHQSFLGNDRESIGFEKAGIMRQEQDIVIGDTNAPKSVINHANELHKNQVNRIFLRDQDFIVQNTQPHWNWKTKQTQLTELKAPHIPRDNVATALMVLEKLNLTLTPDFVNEVIAKTKVAGRTELIKQKGLCDVILDVGHNPQATRYLAGYLKQIKEQANYQNIYAVVAMLGDKDISASLESLKDDIDFWYTGALSVPRAATKETMASKLALFTNSVNCFDNVDEAFRMANKQANSSDLILVFGSFFTVSKIRAQLTIS
>NC_003910.7|WP_011044549.1|3962170_3962785_-|SPOR-domain-containing-protein
MSTPFQNRLVGTIIVAAVVIIFLPDLLDGEKKSHQDDFEAIPKAEVFSGKLTNKPFPEDKLIRQKVTPISNEQAIDEPGIDNSASKPTKQVDQVTKKVSKPAVKPPVKVVSKPKKTLPEKAVAKEAWVIHLGSFKNKDNVAQLLKKLKAKGYIAFTKPIKTKQGTLTKVIIGPELIKTSMVKKLPALKTLTGIQGKVAYFEPNK
>NC_003910.7|WP_011044548.1|3961597_3962080_-|CvpA-family-protein
MVWIDYAILAVIGVSTLVSLIRGFVKEAVSLVIWISAFFIASTFYANLANLLTNISDPFLRNAAAVAILFISTLVLGALVNYLIGQLVSKTGLSGTDRVLGLVFGALRGVLIISAVIFFVDAFTGAENTQWWKSSELIPEFKLVVEWFFEYLKGSSSYIT
>NC_003910.7|WP_011044547.1|3959909_3961427_-|amidophosphoribosyltransferase
MCGIVGIVGKTPVSQHIYDGLTVLQHRGQDAAGIVTIHNNTFRLRKGNGLVKDVFHTRHMLRLQGNIGIGHIRYPTAGTSSSSEAQPFYANSPFGLSLAHNGNLTNAEELRTWLFDEARRHVNTTSDSEVLLNILAHELQQSENIALTPEDIFTAVAKVHKRVRGAYATVALIVGHGMIAFRDPNGIRPLVFGKRETELGVEYMVASESVALDACSFEFVRDVAPGETIFFSEDGLIHSLQCAENPVYSPCIFEFVYFARPDSTMDKMSVYASRVEMGTKLGEKIAEEWQDIDIDVVIPIPETSCDIALQIAKQLNLPYRQGFVKNRYIGRTFIMPGQEQRKKSVRQKLNAIATEFKGKNVLLVDDSVVRGTTSEQIIDMARASGAKNVYFASAAPEVRFPNVYGIDMPSANELIAHGRELDDICSLIGADKLIFQSLEDLISAVSVGNPDIKTFDTSVFDGNYVTNDIDQAYLERLDALRNNTSKEESDKNADSIIDMHNEGAE
>NC_003910.7|WP_011044546.1|3959171_3959771_+|YIP1-family-protein
MILNHIWGLYAHPKEEWHVIEKRHESLSYSLMHILTIALIPTICSYYAAAHIGWTIGVGNPIKISVESAQIMAVSMYFALIFGVFALAYLIQWMAKTFDSKPDFVQALELAAYTATPLLMVGITALFPVLWFVALAGIAAVAYSIYLLYSGVPIMMNIPEEKGFIYSSSVVTCGLVLLVGLMAFTAVMWTMGFGPEFVA
>NC_003910.7|WP_049757919.1|3958646_3958955_+|hypothetical-protein
MYAFYNKKNLTSKNAAQKLVKKHDKLVHSENMKVVSHVQRECDDWIINTLILDNLDVPFKYKRKKLYQSLQGQRINLTYYPEVETIAGFSIEVMSVVRVKVS
>NC_003910.7|WP_011044544.1|3957741_3958518_-|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE
MTEAETLLIPILKFLSCETPDAWVNKAKKKENLPIILRDHLACELKAGQTAMYLIRKYAVDKDSTNVLLEWFEPYEDFLYRKKGDLASLANKNNLSKAILPKSSKSQGTSPFSQNLIDKMVLLIKEELHHFYQVLEIMVKRDIPFDGITAGRYAKGMLKHVKTFEPDALVDKLIIGAYIEARSCERFAKLAPHLDDDLNKFYVSLLRSEARHYQDYLTLAGQVAGKDISERVAYFANVEAELILSPDEDFKFHSGTPV
>NC_003910.7|WP_011044543.1|3956896_3957643_+|UDP-2,3-diacylglucosamine-diphosphatase
MIEDNKTAITYFIADLHLSENRPDISACFLRFLESDAVQAEKLYILGDLFEAWVGDDDDSPFLKTIADALTKLSKSGTMIYYIHGNRDFLIGKRYAKQASMQLLPEVETIDLYGRHVVIMHGDTLCTRDVDYQVFRKKSRSWWWQAAIKSLPLFIRKKIAADYRKKSATATAVKSQAIMDVTESEVIECLQKYRSQLLIHGHTHRPAIHEISVNGDNAQRIVLGDWYEQGAWLKVTANSIQLLNQSLT
>NC_003910.7|WP_011044554.1|3970215_3971235_-|aspartate-semialdehyde-dehydrogenase
MAQKFDVCILGATGLVGKTIMEILEERKFPINKLYPLASARSAGEIIEFNGQSIEVLNADDFDFSQVQIGFFSAGGSTSAKFAPIAAEAGCIVIDNTSEFRYDADIPLVVPEVNPEALADYRNRNIIANPNCSTIQMLVALKPIYDAVGISRVNVSTYQSVSGGGKEAMDELAKQTANLLSGKPVESKKFSRQIAFNVIPQIDDFLENGYTKEEMKMVWETKKILGDENVLVNPTAVRVPVFFGHGEALHIETNSPISADEVKDLLEQAPGIVVCRNDEDFPTQIGDASGKDDTYVGRIREDISHSCGINMWIVADNVRKGAATNSVQIAELLVKDHLS
>NC_003910.7|WP_011044555.1|3971293_3972475_-|4-phosphoerythronate-dehydrogenase
MKIYFDENMPFAKEFFSELCHLNNGIDGEEQGELVPFSGRTLTAAQVADADVLLVRSITQVNEQLLHLNDKISFVGSATIGTDHIDLSYLAKRNITFQSAPGCNAISVAEYVLSALVVLAERYLLTLSSLTVGIVGGGNTGTRLSEKLTALGIQHKICDPLLAEKQKQDKSHPPTDQRHYVPLVDVLACDVISLHVPKVVGGEHPTNKLINAENLALLREDQILISACRGDVIDNHALLALKTAGHGVKIVLDVWQGEPDVLEALIPYTEIATAHIAGYSLEGKARGSEMLYQALCQQLAITPKYQLANFLPSASIPAIEINQDFNQILLNQLVKMVYDVRRDDAIFRQQLFVQGFDSLRKNYPVRREFSAVTVNLSSTTYSDVPHRLGFNKN
>NC_003910.7|WP_011044556.1|3972670_3973882_-|beta-ketoacyl-ACP-synthase-I
MKRVVITGLGIVSSIGNNADEVLASLKAGKSGISHSESFAEQGLRSQVWGKPDIETKDHIDRKAIRFMGDAAGYAYIAMDQAVKDAKLTEDQVSNFRTGIVAGSGGASSENIVASTDTLRNRGIRRVGPYAVPKTMGSTVSACLATPFKIKGVNYSISSACATSAHCIGNAMELIQLGKQDIVFAGGGEEVHWSLAMMFDGMGALSAGRNDTPELASRTYDADRDGFVISGGGGMVVVEELEHALARGAHIYAELVGYGATSDGYDMVAPSGEGAVRCMQQAMQGVEGKLDYLNTHGTSTPVGDVKELGAIQELFGEDSPAISATKAMTGHALGAAGVHEAIYSILMMENNFVAPSINIDNLDEKAQGLDIVTEKRDVELNLVMSNSFGFGGTNATLVMKKYK
>NC_003910.7|WP_011044557.1|3974139_3976188_+|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MKKLDKTNNSNKLSYQKDGTPYCQRFDDIYFESESGYQQSDFVFIQKNKIGLRLQIAKQTFTVAETGFGTGLNFLLTLQAYQKAQQVSSFQLAPLHFISVEKYPLTKEQLVQSLSILPQLQSLALTFINSYPDCPVEEFGQEFKTTFFNGQVRLTLIFDDAAQGFSSLNCSKEGLVDAWYLDGFTPAKNPDMWSKDLFSQIGRLSKDQATLTTFTVAGFVKRQLRDIGFRLEKLLAKGKKKEMLSAVMQSNPITNKGYYLRPLITKPQHVSIIGGGIASACAAYALTKQGVKVTLYCKDTSLAQGGSSNAIGALYPLLHQQEDDISSFYQQAFWRAKALYTEIAEQGFSFAHQWCGLLEVSYKEALIKRQQAFESLNTWPNELIHGVNAKQASELANIDLPYGGLFMPNAGWMSPRDLVKQIFNAAKSTTRLKIMTDTHITKIQQVANPSSNENGTSWSLTSNQGEFNASVLVICGGADAIEIEQLKSLPLTATRGQVTSMKSNKKINKLSTVICHKGYLTPENNGIHCIGATFQKNDTNITTNKADDDYNLTMLTKCLPELSSTIDWQEQDISSSKARLRCMSQDHLPLVGAVPDIKEHVATYSHLAKDKNWKYSQAAPCIDNLYVLLGLGARGLCSAPLAADILTAELCNTPYPVDSQMLFNLSPNRFIIRDIIKRKIKS
>NC_003910.7|WP_011044558.1|3976347_3977178_+|type-IV-pili-methyl-accepting-chemotaxis-transducer-N-terminal-domain-containing-protein
MKVSLPQWPIIIIALLLSIAFHPVDAQQLNTSQAINQAGLQRMLSQRMAKNYILLSQNIDANAAADELDESAALFEENLFSLTSSIKDKKSKTALQRLKREWYGFRVFALENAKTENTERVVKKSTSLLKTAHELVLSIEFTSRSHSDHLVNLSGRQRMLSQRLAMLYYASNSGYTEKLFQQEMHKTARQFDQALTKLIKSRENTPEIKESLQDIANQWSFYKTRFDGSDKGRFSPKTIKVVSESLLKAMNDITKLYEIVSTSENKYASWIKPANK
>NC_003910.7|WP_011044559.1|3977238_3977535_-|YfcL-family-protein
MSDSSDNTLTTVEQLYKYLDSLFEQDIDSDTLFASGYLRGLIALTATDFGDEQQSLTTELIQAINHKIAAAKAELSPQDSVIVSNFWLKLQEKLAINT
>NC_003910.7|WP_011044560.1|3977734_3978898_-|ATP-NAD-kinase-family-protein
MKHFKLGFIINPIAGIGGSVALKGSDGMAMHALALGAKPQANARATLALEVLLPYKDDIVIYTANDLMGEQCARDLGFKVEVLYQAKQKHTESNDSQLTVEALLEHGVDIILFAGGDGTARDIANVVASDDDYQQVPVLGIPAGCKIHSGVYAITPKAAGRIIELMVTKELVTLTTGDVMDIDESLFRQGIVKAKRYSEMKIPSELRYVQAVKSGGKESDELVLQDIAANVIEEMNEYDDRQFIIGSGSTTAFLMSELALENTLLGVDIVSEQSLAASDVTEAELYKAITDYDGLSKLVITLIGGQGHVFGRGNQQLSPRIIRTILAQSGGSDNITILATKAKLEALNNKPLISDTGDIELDQELSGFMPITTGYKDQVLYPLASPQ
>NC_003910.7|WP_011044561.1|3978884_3979454_-|elongation-factor-P-hydroxylase
MQHHYQDLISLFDDVFFKQYNTRLIKGGDEPLYAPADDNCTFHQIIFAHGYYASAFHEIAHWCQAGEKRRLLEDFGYWYIPDGRNEKQQKKFEQVEVIPQAIEWAFNVAAQRKFHTSADNLNGYQGDLSGFKAKVHQQVLIFIENGFPSRAQQFIEALTNFYQTPYPLTALQFGENVGNSEKEHEYETF
>NC_003910.7|WP_011044562.1|3979699_3980032_-|Na+/H+-antiporter-subunit-G
MTEWIISILLLVGGSFVLVGSIGLVKMPDFFMRLHGPTKATTLGMAALLTAAMIFFSTTQAGLSVKEILISLFLLLTAPISAYMMIKSAIHHKLESIERTSGKDNIEDDI
>NC_003910.7|WP_011044563.1|3980042_3980312_-|K+/H+-antiporter-subunit-F
MLETVILIVFAMIGLSLLLNIWRLLVGPSVPDRILALDTMYINSIALIILYGMSMGTALYYEAALLIAMLGFVSTVAVCKYLLRGDIIE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NC_003910_1	1.1\|367941\|60\|NC_003910\|CRISPRCasFinder	367941-368000	60	NC_003910.7	367897-367956	1.0
NC_003910_1	1.1\|367941\|60\|NC_003910\|CRISPRCasFinder	367941-368000	60	NC_003910.7	889734-889793	1.0
NC_003910_3	3.1\|889778\|60\|NC_003910\|CRISPRCasFinder	889778-889837	60	NC_003910.7	367897-367956	1.0
NC_003910_3	3.1\|889778\|60\|NC_003910\|CRISPRCasFinder	889778-889837	60	NC_003910.7	889734-889793	1.0

1. spacer 1.1|367941|60|NC_003910|CRISPRCasFinder matches to position: 367897-367956, mismatch: 0, identity: 1.0

gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	CRISPR spacer
gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	Protospacer
************************************************************

2. spacer 1.1|367941|60|NC_003910|CRISPRCasFinder matches to position: 889734-889793, mismatch: 0, identity: 1.0

gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	CRISPR spacer
gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	Protospacer
************************************************************

3. spacer 3.1|889778|60|NC_003910|CRISPRCasFinder matches to position: 367897-367956, mismatch: 0, identity: 1.0

gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	CRISPR spacer
gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	Protospacer
************************************************************

4. spacer 3.1|889778|60|NC_003910|CRISPRCasFinder matches to position: 889734-889793, mismatch: 0, identity: 1.0

gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	CRISPR spacer
gttatcctggcaagcgtgcctggacaatgaattagtaccaaaaagttatcctggcaagcg	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage