CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007650	Burkholderia thailandensis E264 chromosome II, complete sequence	1 crisprs	csa3,cas3,DinG	0	0	5	0
NC_007651	Burkholderia thailandensis E264 chromosome I, complete sequence	2 crisprs	WYL,cas3,cas4,DEDDh,csa3,DinG	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007650_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007650_1

1279760-1279851

Orphan

Consensus_repeat	Method
CGCTTCCGCCTTGCGCGCGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007650_1

>merge|NC_007650|1|1279760-1279851|CRISPRCasFinder
CGCTTCCGCCTTGCGCGCGTCGCCGTCGTGCCTGCGGTGCCTGTCGTCGTCGGCCGTGCGCTTCGCGCCCGCTTCGGCCTTGCGCGCGTCGC

>NC_007650|1|1|1279760-1279851|CRISPRCasFinder
CGCTTCCGCCTTGCGCGCGTCGC	CGTCGTGCCTGCGGTGCCTGTCGTCGTCGGCCGTGCGCTTCGCGCC
CGCTTCGGCCTTGCGCGCGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007650.1\|WP_009896599.1\|1283057_1283411_+\|hypothetical-protein	unknown	unknown	unknown
NC_007650.1\|WP_009896591.1\|1275308_1276034_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NC_007650.1\|WP_011401144.1\|1273951_1275259_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NC_007650.1\|WP_009907539.1\|1273009_1273900_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NC_007650.1\|WP_009896604.1\|1288109_1290140_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NC_007650.1\|WP_009896595.1\|1280685_1281195_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NC_007650.1\|WP_011401141.1\|1269684_1271316_-\|cytochrome-c-methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|224771
NC_007650.1\|WP_019255458.1\|1276234_1277497_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_007650.1\|WP_009896593.1\|1277852_1278473_+\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319799
NC_007650.1\|WP_009896587.1\|1268661_1269522_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377216
NC_007650.1\|WP_009907543.1\|1281387_1282404_+\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|183494
NC_007650.1\|WP_011401150.1\|1284317_1285709_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|293737
NC_007650.1\|WP_009896600.1\|1283498_1284140_-\|hypothetical-protein	unknown	unknown	unknown
NC_007650.1\|WP_009896597.1\|1282579_1282738_+\|hypothetical-protein	unknown	unknown	unknown
NC_007650.1\|WP_011401139.1\|1267558_1267771_-\|DUF3079-domain-containing-protein	unknown	unknown	gnl\|CDD\|337966
NC_007650.1\|WP_009896586.1\|1268075_1268348_-\|hypothetical-protein	unknown	unknown	unknown
NC_007650.1\|WP_009896603.1\|1286645_1287836_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_007650.1\|WP_011401142.1\|1271312_1272791_-\|ser/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277318
NC_007650.1\|WP_127446362.1\|1285824_1286106_-\|hypothetical-protein	unknown	unknown	unknown
NC_007650.1\|WP_009896602.1\|1286130_1286472_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_007650.1\|WP_009896591.1\|1275308_1276034_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	5.37598e-59
NC_007650.1\|WP_011401144.1\|1273951_1275259_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.05988e-132
NC_007650.1\|WP_009907539.1\|1273009_1273900_-\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.26079e-68
NC_007650.1\|WP_009896604.1\|1288109_1290140_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NC_007650.1\|WP_009896595.1\|1280685_1281195_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.18054e-47
NC_007650.1\|WP_011401141.1\|1269684_1271316_-\|cytochrome-c-methylamine-utilization-protein	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	2.48399e-82
NC_007650.1\|WP_019255458.1\|1276234_1277497_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.64768e-73
NC_007650.1\|WP_009896593.1\|1277852_1278473_+\|HAD-hydrolase-like-protein	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.36094e-67
NC_007650.1\|WP_009896587.1\|1268661_1269522_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377216	pfam04072, LCM, Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.	4.81736e-51
NC_007650.1\|WP_009907543.1\|1281387_1282404_+\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|183494	PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase; Provisional.	0
NC_007650.1\|WP_011401150.1\|1284317_1285709_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	2.05264e-98
NC_007650.1\|WP_011401139.1\|1267558_1267771_-\|DUF3079-domain-containing-protein	gnl\|CDD\|337966	pfam11278, DUF3079, Protein of unknown function (DUF3079). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.88329e-34
NC_007650.1\|WP_009896603.1\|1286645_1287836_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.29202e-55
NC_007650.1\|WP_011401142.1\|1271312_1272791_-\|ser/threonine-protein-phosphatase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.48527e-09

>NC_007650.1|WP_009896593.1|1277852_1278473_+|HAD-hydrolase-like-protein
MAYKLIAFDFDGTLADSLACFLLALSESARQHGFRAIDGALLPQVRGMSAHEIVKLLGVPPWKVPLIAADMRRRMHARASDVRLFAGIDATLRALAQRGTRIAIATSNSEAVVRAIAGPATCAHIRHFSCGISLFGKARRLRALAHASGFACADVLYVGDEVRDAQAADRAGIAFRGVAWGYTAPDALQAHCRMPLIERPEELLAL
>NC_007650.1|WP_019255458.1|1276234_1277497_+|MFS-transporter
MTKIARRLMPLLVIMFLIAFIDRQNVGFAKLQMVHALGMTETSYGLGASLFFIGYLLFEVPSTLALHRFGARLWLARIMMTWGVITVLLGFTHSTSVFYVFRFLLGVAEAGFYPGVIYYLTLWFPQSHRTRVLGLFTLGSALANMLGSLAGGLLLSLDGRLGLAGWQWVFVATGLPAVAVAFVALRYLPESVERATFLADDEKRVVLAALKREASPEAVSESPWRALVDPRVLMFALAYMLMSTSLYGVTYWLPTLLKSSGVPASLNGLLNMIPWAIAALLLLWLPARLKRERLVLKAMAIVAGVGVAGFALSLALPGLPLRFAALVLGGACIPLLYPCFWSLPPRFFSGARAAASIAAINSIGNLGGFFAQNLMPYVGKAAGSTSAPMLVPVVCLAALGVGMLAAASVAGRRRAAGMAA
>NC_007650.1|WP_009896591.1|1275308_1276034_-|GntR-family-transcriptional-regulator
MHATDDRLPRYQRLRDELAALIAARHWRPGEAIPTEQALAKRYDVAIGTVRKAVDLLVADGMLERFQGRGTFVRRASFDSSLFRFFRFQSKHGERRIPESRILRREVVEATSAVAAALQIPARAPVIEMTRVRLIDGAPMLAEEIWLPYDRFAAFSRLELDSIGDLLYPVYEAHCNQIVASATETLTVEAIGPAHARLLRIEPGTPAVVIERLAYGYDRRPLEWRRSRGPASEFIYQAEIR
>NC_007650.1|WP_011401144.1|1273951_1275259_-|MFS-transporter
MFEWFATVSLRERRTFWACFGGWALDALDMQMFSLVIPAIVAEWSLSRTQAGFVGGATLVASAIGGWVAGMLSDRFGRVRTLQWTIACFAVGTFACAFATSYPQFVVLKALQGAGFGGEWAAGAVLMAETIRAEHRGKAMGAVQSAWALGWAAAVLLYALAFSLMPAALAWRAMFAIGLLPALLIVYVRRGIVEPSVSASSPSNTPAAARASVPLVGIFSRDTRRMTLIGALLGVGAHGGYYALMTWLPTYLKVERHLSVLGTGGYLAVIIVAFFCGCIASAQLLDRIGRRGTILAFAACCIATVIAYLFLPLGNAAMLVLGFPLGFFAAGIPASMGALFNELYPRGTRGTGVGFCYNFGRVASAGFPVLVGHMSADMPLGTAIGIDAAIAYSIVVVAVLLLPETRARALDDLAVAHATADARADRIGAPGARHR
>NC_007650.1|WP_009907539.1|1273009_1273900_-|amidohydrolase-family-protein
MSGQEWSACAHAAAMRRAASDITAIDAHAHVFETGLPLAGRRRYAPDYDAPLDAYLAQLDAHRVSHGVLVQPSFLGSDCRYLLRALAQQPRRLRGVAVIDAGCEPHVLDTLDRAGVVGIRLNLIGMPDPALDGPAWRATLERIAALRWHVELHAQAQRLGRLIAPLLAHRVNVVVDHFGRPNPACGIADAGFRDLLRTAATRRVWVKVSGVYRNWPLAPGEANARAQEAFDALAAEFGAERLVWGSDWPHTQFERTETFGRAFALARQWMRDDAMRRAIFVETPARLFRFGELHGA
>NC_007650.1|WP_011401142.1|1271312_1272791_-|ser/threonine-protein-phosphatase
MPRPILRRAAALLPTLASAALLQACTSSIDNQPDAASASANIQAAWVEIGDANQAIARVITSYAPPAAAPGEAAPAVCPQLNADGKIARMTLRAAAGTAAQRPTASDPADSKPSGFPVSVCEATVPANAKGVTVAGRALPLPKAEPQRVAIIADTGCRMKKADNAFQACSDATVWPFATIAASVAKLNPDLVLHVGDYHYRENACPPDIAGCKNSPWGYGWDAWRADLFEPAAPLLAKAPWVVVRGNHEECARAGQGWFRFLDPRPYSDARSCNDPANDGNANYSEPYAVPLGTGSQVIVFDTAKVGRAALKTTDVQFQIYQKQFQTVAALANKPGMSTTIFTNHHPILAFAPIPGSTPAPGNLALQSVMSSLYAQAYYPPGVQIALHGHVHDFQAINFASGHPATIVSGNGGDNLDVALPDPFPANLTPAPGVVIDKLSHNNSFGFLIMERRAAPARGWTFKAYTAAGKLLASCDQAGTTLTCDKTGFVAP
>NC_007650.1|WP_011401141.1|1269684_1271316_-|cytochrome-c-methylamine-utilization-protein
MTGRRRSSAARRAVPAAALTARASVTAFALGPAALGTTRTRRTVLTLSTIVRAACGALAACASAIALASGPAAPDATHSTHAARPASAASSTSPMNPTSTPGASGPAHAKAALDAARAKAAPPSPPTTVLLPGAPPERVVDTIGRGTPQVASKVDPTAAVFRPDPTLAALGKRVFFDPALSEPRGMSCASCHDPGRAFAPTLSPAALAGPRVPQGSRPGHFSRRNAPSLLYVRYVPRRHFYQDDDALAPAPFGGLFSDGRADTLAEQLRGPLFDPDEMNNASAAALMRKIGRTGLGAALAGRFGPSVRRDPERMVRVLGEAMQAYLQSDEMAPFSSRYDAYVTKRAPLTPQEMRGLALFRNPDKGNCMSCHTLSDTASRPERSLFTDFGYDAIAVPRNRALPANRDPRHFDNGLCDTAAKLRWPEPTQWCAYLRTPGLRNVAIKESFMHNGVFDTLRDAVAFYNTRSTDPARWYHGRDTFDDVPRAYRGNVNVNSTPMNRRPGTPPAMTDADVDDLVAFLRTLTDARYVGLMPTAPDGKAARP
>NC_007650.1|WP_009896587.1|1268661_1269522_-|class-I-SAM-dependent-methyltransferase
MSNQSIAAPDSTAVRVALWRALHVEIDAPPHVLDDGIGLELAAPDDDWRSRPDMAPQATRGYRASIVGRARFVEDLIGEQAERGVAQYVVLGAGLDTFAQRRAKLASHLRVFEIDQPGTQAWKRQRLIALGYGVPEWLRLVPVDFEASGAWRAQLSAAGFDDSRPAVVSSTGVSMYLTRDAIAGTLRRIATLAPGSTLAMTFLLPLELIDDPAERAQHAAVYERARAAGTPFVSFFSPAEMLALAREAGFREVRHVSTDDLVRRYFEGRPDGLRPSSGEAFLVAST
>NC_007650.1|WP_009896586.1|1268075_1268348_-|hypothetical-protein
MEHLVRIVNDTDRQILAWLRNQVGDERVERAAQHMGRVRKPYLSAVCRYLGVWPPISLRYQTRRAEVDHAVGDRYLTLIRQHLATHAASR
>NC_007650.1|WP_011401139.1|1267558_1267771_-|DUF3079-domain-containing-protein
MAKKFPLHPKHPERNCWGCDRYCSVDALSCGNGSDRTQHPVELLGDDWYEWEQENEAAQKQMQQTQAAAR
>NC_007650.1|WP_009896595.1|1280685_1281195_-|winged-helix-turn-helix-transcriptional-regulator
MCATKKSAPKAAAQPAGADIDRVDRAILRMLQRDASISNVALAAKVNLSAPACLRRVERLKEMGLIRGIVALLEPKALNAGMLVMIGVVLDRSTPDSFGAFEQAAQKVSGCMECHVVTGEFDYIMLIRTRDSDTFNRLHAEQLLYLPGVRQIRTFVVLKEILSTTSFPI
>NC_007650.1|WP_009907543.1|1281387_1282404_+|1-aminocyclopropane-1-carboxylate-deaminase
MNLQKFPRYPLTFGPTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLVPDGFDIGFRKSWEDALADVRARGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGIDASAKPAQTREQILRIARNTADRVELGRDIASGDVVLDERFGGPEYGLPNEGTLEAIRLCAKLEGVLTDPVYEGKSMHGMIEKVRLGEFPAGSKVLYAHLGGVPALNAYSFLFRDG
>NC_007650.1|WP_009896597.1|1282579_1282738_+|hypothetical-protein
MVSNNIVALHNFEIACDAISISGEVTVRSRQARGALAGRPMPIAGWMRARSN
>NC_007650.1|WP_009896599.1|1283057_1283411_+|hypothetical-protein
MGFVGGERRRARIAESNEIDGATLITKVASEPLAALGGARSEATPPLTLYGAYRQGFADYLAGRPNPYRIGSRLAGIWHEGHAEAASNDALDFTARARTCGGARTAANPVAFFRRRR
>NC_007650.1|WP_009896600.1|1283498_1284140_-|hypothetical-protein
MKIRSGLVAELTVNLLLPWAAYRAAAPHWGETGGLIASAVPPLAWSVIELARFRRIDALSAVVLFGIVLSIAAALAGGSPRMLLMRESLASGAIGVAFLGSLALRKPLVFHLARATIAREAHDGAARIDALWAERPAFVSAMRLMTLVWGSGLVAENLLRAWMVWNWPVERVLVVAPFVGYGIYGALMLWTLWYRKVMRAHALAGLPRGGALG
>NC_007650.1|WP_011401150.1|1284317_1285709_-|alkaline-phosphatase-family-protein
MAKILENVEHIVVVMFENRSFDTMLGWLYPPGTQPAHVLPARGSPQFDGLKPDMSNPSRAGKTIAVTREATNNVIPDPQETFVNVTSQILGPGGAGNPWPPMQGFVVNYETTRTSDPGHVMQCHSVAQLPTLTALARAYAVSDAWFASVPSQTWPNRAFAHAGTSNGHVNNGAIPDPLEWDVPTIFDVLSSIGASWAVYSDTAVTPSLTHTMFPSLWNDKYADNFERFPDFVAACKNDALPRYAFVEPSFLFEPNDQHPPHDVLAGDKFLHDIWTAISTSPGWPRTLLVVTYDEHGGCFDHVLPPANATPPDAASNPGDETFEFDRFGVRVPAVVVSPYIEAGTVFRSPTNVPYDHTSILATLRDWLAIAPDKMLKSARIANAPTLAQLFTRSVPRGDLPAIAAPSADFVQPPPSAPLNDLQKSLVTGTSRRDGNDPAASVAPIATRQHALDFFTRRATAKPT
>NC_007650.1|WP_127446362.1|1285824_1286106_-|hypothetical-protein
MTTEPARASGGARSFTHRADRAAIRRHRQRHLRHQRGYRRNESVFMGGGANSAPGDEFAAMIETAPARAHPPARRVAGTPAAPPCFSRNIGYT
>NC_007650.1|WP_009896602.1|1286130_1286472_-|hypothetical-protein
MIAPATPAALAAGATTFAEWAALGTLALLYLFGLGWSLRGALARSRGRAYWLACAALIAGGTACALLAKPSAPNSGEMPPGFGLGVLVVMLGIAGTTAGCAWQAIARLRHGQR
>NC_007650.1|WP_009896603.1|1286645_1287836_+|serine-hydrolase
MNLESVTPATAAAAATDHAAVAGRLDRVFATALAERRVVGAVALVARGGELVYRRAHGFAERETQRPMREDTLFRLSSITKPIVTVAVLRLVAAGRMALDAPITRWLPEFAPALPDGRAPALTVHQLLTHTAGLSYWLLEAPGSAYHTLGISDGIDLVDFDLAENLRRIAAAPLAFEPGSAWRYSLALDVLGAAIERETGLALPDAVAQLVTTPLGLRDTGFVAADPARFAAAYANAAPQPVRITDNLDVPLPEGHGVAVRFAPSRVFDATAFASGGAGMYGSADDVLRVLETIRTGGDGFLPAALAAAMRTDHTGPAAETRGPGWGFGYGGAVLSDPARAQSPQSAGTLQWGGVYGHSWFVDAARGLTVLLMTNTAYEGMSGPLTVEVRDAVYAV
>NC_007650.1|WP_009896604.1|1288109_1290140_-|BCCT-family-transporter
MPSSRSAPRTTLKPQVVVPSLAVIGALLAVCALLPNEAGALFGAGQQWIVERFDWFYVLAITTFLIFIVLIAASRFGNIKLGPDDAEPEFSFVSWTAMLFAAGMGIGLMYFGVGEPIQHYLKPPTALGGTPAAAREAMLMSFFHWGLHAWATYGVMGLVLAYFGFRYNLPLTLRSGLYPVLREGVNGWIGHTVDAFALVGTVAGIAVTLGYGVLQLSAGLHTIAGWQTDSDAFRIGLVAVVVALAGLSAASGLDKGVRRLSELNLMLAFALLAFVVVAGPTSFLLRAFGDNVGEYLSKLVSLSFRTYAYEAPNDKGWFGGWTLLYWAWWVSWSPFVGMFIARISRGRTIREFVIGVLLVPTAFNLVWMTAFGNSAIWLDTHAAAGALAQTATNVDALLFRFFDYLPLTQLLSVAAIVLIAVFFVTSADSGAFVIDAIATRGAPHSPVWQRLFWAAVLGVTASVLLVAGGLKALQALTLVAALPVALVMLALCYGLWRGLKADHAHYSQEMAPATSFWTGQHWRQRLSQILRHTTGADARRFIAQTVEPALRKVAEELKAGGVDAHVARDDDDAVRLTVPAPAQRDFVYGARVSRKSAPAFRIREAAEPEPQREHVCEVLTFFADGRLGYDIEYLRGDEIIADVLRQYERYVSLASDTRTHLLNRAPEHAGPDGLTQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

86626 : 164083

Ralstonia_phage(28.57%)

transposase,holin,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009894648.1\|86626_88822_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_009894655.1\|90536_91553_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_009894657.1\|91571_92024_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041223671.1\|92487_93405_+	ABC transporter permease	NA	NA	NA	NA
WP_009907076.1\|93391_94246_+	ABC transporter permease	NA	NA	NA	NA
WP_009894662.1\|94242_95274_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_009894663.1\|95822_96893_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.6e-62	43.4
WP_009894664.1\|97052_97358_+	H-NS histone family protein	NA	NA	NA	NA
WP_011400785.1\|97679_100460_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.8e-89	34.2
WP_025404153.1\|100473_102714_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	2.3e-23	28.7
WP_025404154.1\|102732_104391_+	DUF2875 family protein	NA	NA	NA	NA
WP_009894667.1\|104400_104664_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_085952878.1\|105870_107080_+\|transposase	IS3-like element ISButh2 family transposase	A0A1B0Z042	Pseudomonas_phage	7.0e-99	63.1
WP_011400791.1\|107166_108702_+	DUF2875 family protein	NA	NA	NA	NA
WP_009894681.1\|108711_108975_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004523721.1\|109389_109809_-	YjbQ family protein	NA	NA	NA	NA
WP_009894689.1\|109828_110155_-	thioredoxin family protein	NA	NA	NA	NA
WP_009894691.1\|110627_111320_+	hypothetical protein	NA	NA	NA	NA
WP_009894695.1\|112129_112486_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_009894697.1\|112963_114106_-	porin	NA	NA	NA	NA
WP_009894698.1\|114737_115682_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009894700.1\|116222_116546_-	hypothetical protein	NA	NA	NA	NA
WP_127446348.1\|116734_117046_-	hypothetical protein	NA	NA	NA	NA
WP_009894702.1\|117173_117419_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_009894703.1\|117551_118751_-	transcriptional regulator CynR	NA	NA	NA	NA
WP_009894704.1\|118750_120184_-	TolC family protein	NA	NA	NA	NA
WP_009894706.1\|120177_121077_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009894707.1\|121078_121303_-	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_038707668.1\|121299_123366_-	FUSC family protein	NA	NA	NA	NA
WP_025370055.1\|124375_125917_-	membrane protein	NA	NA	NA	NA
WP_154660021.1\|126264_126621_-	hypothetical protein	NA	NA	NA	NA
WP_011400797.1\|127465_129949_+	hypothetical protein	K4F7R4	Cronobacter_phage	9.0e-08	46.1
WP_025404156.1\|130024_131476_-	PhoPQ-regulated protein	NA	NA	NA	NA
WP_009907087.1\|131726_132125_-	hypothetical protein	NA	NA	NA	NA
WP_011400800.1\|132906_133461_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_011400801.1\|133542_134268_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_162465482.1\|134316_134475_-	hypothetical protein	NA	NA	NA	NA
WP_009894721.1\|134427_137124_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_025988574.1\|137116_137689_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_009907089.1\|137719_138409_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009894727.1\|138411_140088_+	OmpA family protein	NA	NA	NA	NA
WP_009894728.1\|140431_140971_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_009894729.1\|141004_142504_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009894730.1\|142704_143187_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_011400803.1\|143314_143857_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009894732.1\|143862_145212_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009894733.1\|145208_146510_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_009894736.1\|146524_150433_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009894738.1\|150602_151172_+	hypothetical protein	NA	NA	NA	NA
WP_011400805.1\|151272_153891_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-35	26.0
WP_004523693.1\|153965_154235_+	PAAR motif protein	NA	NA	NA	NA
WP_011400806.1\|154247_157700_+	RHS repeat protein	NA	NA	NA	NA
WP_038707671.1\|157592_158951_-	hypothetical protein	A0A292GJ55	Xanthomonas_phage	2.6e-110	49.7
WP_009894750.1\|158983_160012_-	fimbrial protein	NA	NA	NA	NA
WP_009894751.1\|160067_161138_-	type VI secretion protein ImpA	NA	NA	NA	NA
WP_009894753.1\|161156_162206_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009894755.1\|162202_164083_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

1175914 : 1261788

Burkholderia_virus(65.45%)

portal,head,terminase,capsid,holin,tail,protease,transposase,integrase

attL 1180951:1180971|attR 1256698:1256718

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099005207.1\|1175914_1176672_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_009896426.1\|1176880_1177585_+	YceH family protein	NA	NA	NA	NA
WP_009896427.1\|1177851_1178664_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_009896429.1\|1178759_1179011_+	hypothetical protein	NA	NA	NA	NA
WP_009896431.1\|1179303_1180536_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009907526.1\|1180824_1182210_+	L-serine ammonia-lyase	NA	NA	NA	NA
1180951:1180971	attL	NA	NA	NA	NA
WP_009896433.1\|1182226_1183471_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_009896434.1\|1183599_1183893_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_009896435.1\|1183889_1186898_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA
WP_011401100.1\|1186887_1187523_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA
WP_009896437.1\|1187522_1187984_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_009896439.1\|1188262_1188475_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_009896440.1\|1189125_1189329_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	4.5e-19	65.7
WP_009896441.1\|1189529_1189745_+	hypothetical protein	NA	NA	NA	NA
WP_009896443.1\|1190037_1190484_-	DUF3761 domain-containing protein	NA	NA	NA	NA
WP_009896448.1\|1190756_1191017_+	hypothetical protein	NA	NA	NA	NA
WP_080555063.1\|1191239_1191545_+	glyoxylate reductase	NA	NA	NA	NA
WP_009896451.1\|1191584_1192070_+	peroxiredoxin	NA	NA	NA	NA
WP_025370236.1\|1192597_1194748_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.7e-16	29.0
WP_009896454.1\|1194773_1195226_+	response regulator	NA	NA	NA	NA
WP_009896456.1\|1195222_1196701_+	PAS domain-containing protein	NA	NA	NA	NA
WP_011401103.1\|1196764_1197961_-	MFS transporter	NA	NA	NA	NA
WP_004548994.1\|1197985_1199113_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	1.9e-50	35.3
WP_076881460.1\|1199102_1199312_-	hypothetical protein	NA	NA	NA	NA
WP_009896459.1\|1199348_1201103_-	hypothetical protein	Q8W6R3	Burkholderia_virus	2.6e-94	100.0
WP_009896461.1\|1201117_1201396_-	hypothetical protein	Q6JII7	Burkholderia_virus	9.0e-42	91.3
WP_009896463.1\|1201395_1201791_-	hypothetical protein	Q6JII6	Burkholderia_virus	3.3e-66	96.9
WP_009896464.1\|1201793_1202465_-	hypothetical protein	Q8W6Q9	Burkholderia_virus	2.5e-122	97.3
WP_009896465.1\|1202478_1203186_-	hypothetical protein	Q8W6Q8	Burkholderia_virus	2.9e-121	99.1
WP_009896467.1\|1203447_1204260_-	prohibitin family protein	Q8W6Q7	Burkholderia_virus	2.7e-139	94.4
WP_009896469.1\|1204256_1204406_-	hypothetical protein	Q8W6Q6	Burkholderia_virus	4.1e-17	89.8
WP_011401105.1\|1204998_1205274_-	hypothetical protein	Q8W6Q1	Burkholderia_virus	6.8e-42	93.4
WP_009896479.1\|1206158_1206551_-	hypothetical protein	Q8W6P8	Burkholderia_virus	7.1e-69	100.0
WP_076912134.1\|1206636_1206879_+	Cro/Cl family transcriptional regulator	C7BGF8	Burkholderia_phage	5.4e-27	76.4
WP_011401108.1\|1207001_1207334_+	hypothetical protein	Q6JIG8	Burkholderia_virus	9.3e-54	94.5
WP_004526644.1\|1207330_1207549_-	hypothetical protein	A4JX47	Burkholderia_virus	1.9e-31	98.6
WP_009896483.1\|1207763_1208204_+	hypothetical protein	Q6JIG6	Burkholderia_virus	2.9e-79	100.0
WP_080511275.1\|1208151_1209411_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	3.7e-111	54.7
WP_009896486.1\|1209407_1210544_+	site-specific DNA-methyltransferase	Q8W6P4	Burkholderia_virus	3.0e-224	98.9
WP_009896489.1\|1210540_1211539_+	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	1.0e-196	100.0
WP_009896491.1\|1211573_1212395_+	hypothetical protein	Q8W6P2	Burkholderia_virus	1.8e-146	99.6
WP_004526650.1\|1212391_1212652_+	helix-turn-helix domain-containing protein	Q6JIG2	Burkholderia_virus	4.2e-41	100.0
WP_015967393.1\|1212805_1213798_+	hypothetical protein	Q8W6P0	Burkholderia_virus	1.4e-177	100.0
WP_011401112.1\|1213794_1214346_+	DUF1064 domain-containing protein	A4JX56	Burkholderia_virus	2.6e-93	96.2
WP_009896497.1\|1214342_1214699_+	hypothetical protein	Q8W6N8	Burkholderia_virus	2.1e-59	100.0
WP_011401114.1\|1215138_1215471_+	hypothetical protein	Q8W6N6	Burkholderia_virus	1.8e-60	100.0
WP_009896498.1\|1215446_1215707_+	hypothetical protein	Q8W6N5	Burkholderia_virus	5.3e-36	81.4
WP_009896499.1\|1215703_1216147_+	hypothetical protein	NA	NA	NA	NA
WP_004549731.1\|1216196_1216466_+	BrnT family toxin	NA	NA	NA	NA
WP_011401115.1\|1216449_1216734_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.4e-11	51.4
WP_025404174.1\|1217364_1217844_+\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	8.2e-59	82.8
WP_011401117.1\|1217843_1219586_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	2.8e-290	84.5
WP_009896509.1\|1219593_1220889_+\|portal	phage portal protein	Q3HQS8	Burkholderia_phage	4.5e-229	90.7
WP_011401119.1\|1220866_1221709_+\|protease	Clp protease ClpP	Q3HQS9	Burkholderia_phage	7.0e-138	91.4
WP_025404175.1\|1221713_1222991_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	2.2e-207	85.8
WP_009896514.1\|1223062_1223227_+	hypothetical protein	Q3HQT1	Burkholderia_phage	3.8e-16	75.9
WP_009896515.1\|1223230_1223572_+\|head,tail	phage gp6-like head-tail connector protein	Q3HQT2	Burkholderia_phage	2.7e-40	76.1
WP_009896516.1\|1223574_1223904_+\|head	phage head closure protein	A4JX04	Burkholderia_virus	1.5e-40	75.0
WP_011401121.1\|1223896_1224319_+	HK97 gp10 family phage protein	Q6JIM3	Burkholderia_virus	3.3e-64	91.4
WP_009896520.1\|1224315_1224663_+	hypothetical protein	A4JX06	Burkholderia_virus	5.9e-59	98.3
WP_009896521.1\|1224725_1225184_+	hypothetical protein	Q8W6T9	Burkholderia_virus	8.1e-64	83.6
WP_009896522.1\|1225211_1225676_+\|tail	tail assembly protein	Q6JIM0	Burkholderia_virus	1.9e-81	96.1
WP_004526674.1\|1225675_1225960_+	DUF4035 domain-containing protein	Q6JIL9	Burkholderia_virus	6.8e-45	100.0
WP_009896523.1\|1225973_1230074_+\|tail	phage tail tape measure protein	Q6JIL8	Burkholderia_virus	0.0e+00	96.9
WP_009896524.1\|1230070_1230409_+\|tail	phage tail protein	Q8W6T5	Burkholderia_virus	2.3e-60	99.1
WP_009896526.1\|1230417_1231824_+\|tail	tail fiber domain-containing protein	Q6JIL6	Burkholderia_virus	1.3e-250	90.6
WP_009896528.1\|1231820_1232504_+\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	3.8e-134	99.6
WP_009896529.1\|1232553_1233306_+	C40 family peptidase	Q6JIL4	Burkholderia_virus	1.5e-139	93.2
WP_009896531.1\|1233302_1233887_+\|tail	tail assembly protein	Q8W6T1	Burkholderia_virus	2.5e-94	93.3
WP_011401124.1\|1233883_1237189_+\|tail	phage tail protein	A4JX16	Burkholderia_virus	0.0e+00	97.7
WP_080511277.1\|1237496_1238213_+	hypothetical protein	C7BGD6	Burkholderia_phage	3.2e-131	93.7
WP_009896536.1\|1238266_1238551_+\|holin	holin	C7BGD7	Burkholderia_phage	3.3e-39	95.7
WP_009896538.1\|1238553_1239003_+	hypothetical protein	C7BGD8	Burkholderia_phage	3.9e-71	92.6
WP_043288963.1\|1238999_1239482_+	DUF2514 family protein	C7BGD9	Burkholderia_phage	2.3e-53	72.5
WP_009896543.1\|1239620_1240409_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	1.5e-155	99.6
WP_011401129.1\|1240511_1241408_+	hypothetical protein	C7BGE2	Burkholderia_phage	2.3e-155	93.6
WP_009896547.1\|1241452_1241656_-	hypothetical protein	NA	NA	NA	NA
WP_009896550.1\|1241652_1242114_-	hypothetical protein	NA	NA	NA	NA
WP_009896554.1\|1242281_1242623_-	MFS transporter	NA	NA	NA	NA
WP_009896555.1\|1242856_1246234_-	hypothetical protein	NA	NA	NA	NA
WP_009896556.1\|1247284_1248982_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	6.5e-50	29.2
WP_009899904.1\|1249001_1250471_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_009896559.1\|1250517_1251105_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_009896560.1\|1252102_1253002_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_009896562.1\|1253281_1254559_+	glycosyltransferase	NA	NA	NA	NA
WP_009896564.1\|1254555_1256127_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_009896566.1\|1256259_1257225_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
1256698:1256718	attR	NA	NA	NA	NA
WP_025404178.1\|1257277_1258840_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_048901535.1\|1259034_1260303_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011401137.1\|1260519_1261788_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.8e-43	42.7

DBSCAN-SWA_3

1546856 : 1614906

Burkholderia_virus(60.0%)

portal,plate,head,terminase,holin,capsid,tail,protease,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009896945.1\|1546856_1548845_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.1e-104	42.9
WP_009896948.1\|1548951_1549557_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_009896949.1\|1549806_1550148_-	hypothetical protein	NA	NA	NA	NA
WP_167316229.1\|1550091_1550232_+	hypothetical protein	NA	NA	NA	NA
WP_009896951.1\|1550850_1551342_+	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	1.7e-14	42.1
WP_009896955.1\|1551338_1551794_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_009896957.1\|1551795_1552785_+	thymidylate synthase	NA	NA	NA	NA
WP_009896959.1\|1552800_1553541_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_009907667.1\|1553742_1554543_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_009896963.1\|1554620_1556051_+	thiamine pyridinylase	NA	NA	NA	NA
WP_009907668.1\|1556131_1556941_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009896969.1\|1557796_1558276_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_009896971.1\|1558334_1560848_+	cation-translocating P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	2.5e-58	29.4
WP_009896973.1\|1560899_1561523_+	hypothetical protein	NA	NA	NA	NA
WP_161654357.1\|1561678_1564117_-	HAD-IC family P-type ATPase	NA	NA	NA	NA
WP_009896976.1\|1564354_1565725_-	DUF3326 domain-containing protein	NA	NA	NA	NA
WP_009896978.1\|1565876_1566296_+	archease	NA	NA	NA	NA
WP_009896980.1\|1566309_1567743_+	RtcB family protein	A2RQD0	Archaeal_BJ1_virus	7.8e-105	45.0
WP_009896982.1\|1567800_1568061_+	hypothetical protein	NA	NA	NA	NA
WP_009896988.1\|1568191_1568896_+	hypothetical protein	NA	NA	NA	NA
WP_009896990.1\|1568892_1569327_+	GYD domain-containing protein	NA	NA	NA	NA
WP_009896992.1\|1569435_1570569_+	CapA family protein	S4VS02	Pandoravirus	4.2e-114	55.9
WP_009896994.1\|1570684_1573480_-	hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	5.0e-07	25.8
WP_009896996.1\|1573483_1575331_-	Hsp70 family protein	NA	NA	NA	NA
WP_009896998.1\|1575327_1575903_-	DUF2760 domain-containing protein	NA	NA	NA	NA
WP_009897000.1\|1576217_1576982_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_154660029.1\|1576971_1577364_-	hypothetical protein	NA	NA	NA	NA
WP_009897002.1\|1577568_1578084_+	ProQ/FinO family protein	NA	NA	NA	NA
WP_009897004.1\|1578097_1578427_+	H-NS histone family protein	NA	NA	NA	NA
WP_009897009.1\|1579399_1580500_-	phage late control D family protein	A4JWS1	Burkholderia_virus	4.0e-202	99.5
WP_009897011.1\|1580499_1580925_-\|tail	phage tail protein	A4JWS2	Burkholderia_virus	9.7e-72	99.3
WP_009897013.1\|1580942_1583903_-	hypothetical protein	A4JWS3	Burkholderia_virus	0.0e+00	95.8
WP_004552648.1\|1583905_1584019_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	5.4e-14	100.0
WP_004531064.1\|1584027_1584372_-\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	1.0e-55	100.0
WP_009897021.1\|1584429_1584939_-\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	1.5e-90	95.3
WP_009897023.1\|1584954_1586127_-\|tail	phage tail sheath protein	Q45YG5	Burkholderia_virus	2.0e-223	99.7
WP_004533037.1\|1586182_1586854_-\|tail	phage tail fiber assembly protein	A4JWS8	Burkholderia_virus	9.2e-117	99.6
WP_009897025.1\|1586870_1589234_-	hypothetical protein	Q45YG3	Burkholderia_virus	0.0e+00	99.2
WP_009897027.1\|1589244_1589799_-\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	3.8e-100	100.0
WP_004524450.1\|1589791_1590697_-\|plate	baseplate assembly protein	A4JWT1	Burkholderia_virus	3.6e-164	100.0
WP_004531058.1\|1590693_1591056_-\|plate	bacteriophage baseplate assembly protein W	K4PAX6	Burkholderia_phage	1.7e-61	100.0
WP_009897036.1\|1591052_1591733_-\|plate	phage baseplate assembly protein V	A4JWT3	Burkholderia_virus	1.8e-123	100.0
WP_011401235.1\|1591906_1592683_+	site-specific DNA-methyltransferase	A4JWT4	Burkholderia_virus	2.1e-149	100.0
WP_009897040.1\|1592848_1593379_-	hypothetical protein	K4NX96	Burkholderia_phage	3.0e-94	100.0
WP_004531055.1\|1593505_1593973_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	1.2e-78	100.0
WP_004531054.1\|1593969_1594386_-\|tail	phage tail protein	A4JWT7	Burkholderia_virus	3.3e-72	100.0
WP_009897046.1\|1594490_1594931_-\|lysis	LysB family phage lysis regulatory protein	A4JWT9	Burkholderia_virus	2.8e-66	96.4
WP_009897048.1\|1594927_1595740_-	DUF3380 domain-containing protein	A4JWU0	Burkholderia_virus	4.5e-150	99.6
WP_004524440.1\|1595736_1596009_-\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_004524439.1\|1596010_1596355_-	membrane protein	K4NZQ3	Burkholderia_phage	2.9e-50	100.0
WP_004524438.1\|1596369_1596576_-\|tail	tail protein	K4PAW7	Burkholderia_phage	2.4e-31	100.0
WP_004524437.1\|1596572_1596824_-	hypothetical protein	K4NXI9	Burkholderia_phage	7.6e-40	100.0
WP_009897054.1\|1596823_1597303_-\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	6.2e-75	92.5
WP_009897056.1\|1597402_1598092_-\|terminase	terminase endonuclease subunit	A4JWP8	Burkholderia_virus	5.6e-117	99.1
WP_009897058.1\|1598088_1599102_-\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	1.6e-189	99.7
WP_009897062.1\|1599135_1599945_-\|capsid	GPO family capsid scaffolding protein	A4JWU8	Burkholderia_virus	3.5e-147	99.3
WP_009897068.1\|1600088_1601858_+\|terminase	terminase ATPase subunit family protein	A4JWU9	Burkholderia_virus	0.0e+00	99.2
WP_009897070.1\|1601854_1602910_+\|portal	phage portal protein	A4JWV0	Burkholderia_virus	5.4e-204	98.9
WP_011401239.1\|1603016_1603289_+	BrnT family toxin	K4NX81	Burkholderia_phage	1.9e-44	97.8
WP_009897071.1\|1603248_1603521_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	4.5e-46	97.8
WP_043288998.1\|1604078_1605194_-	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	1.2e-214	98.1
WP_009897075.1\|1605208_1605946_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	3.8e-132	98.8
WP_009897076.1\|1605942_1606476_-	bacteriophage gp29 protein	A4JWV5	Burkholderia_virus	2.4e-96	99.4
WP_009897078.1\|1606578_1606701_-	CopG family transcriptional regulator	A4JWV6	Burkholderia_virus	5.9e-14	100.0
WP_009897080.1\|1606934_1607588_-	AAA family ATPase	A4JWV7	Burkholderia_virus	1.2e-113	99.5
WP_004532731.1\|1607688_1607895_-	ogr/Delta-like zinc finger family protein	A4JWV8	Burkholderia_virus	8.7e-34	100.0
WP_004532697.1\|1607891_1608158_-	ogr/Delta-like zinc finger family protein	A4JWV9	Burkholderia_virus	1.0e-42	97.6
WP_009897085.1\|1608173_1609967_-	replication endonuclease	A4JWW0	Burkholderia_virus	0.0e+00	99.3
WP_043288967.1\|1609966_1611394_-	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	7.1e-66	38.3
WP_011401243.1\|1611390_1612512_-	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	2.3e-144	77.0
WP_009897093.1\|1612867_1613089_-	hypothetical protein	A4JWW6	Burkholderia_virus	1.6e-38	100.0
WP_004532752.1\|1613404_1614187_-	hypothetical protein	A4JWW8	Burkholderia_virus	6.7e-143	100.0
WP_009897097.1\|1614567_1614906_+	helix-turn-helix domain-containing protein	A4JWW9	Burkholderia_virus	5.4e-57	100.0

DBSCAN-SWA_4

2237673 : 2304337

Aeromonas_phage(25.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009898022.1\|2237673_2238624_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009898024.1\|2238891_2239836_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009898026.1\|2240309_2242013_+	peptidase	NA	NA	NA	NA
WP_009898028.1\|2242131_2243358_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_009907969.1\|2243416_2244559_-	porin	NA	NA	NA	NA
WP_025404202.1\|2244786_2245824_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009898034.1\|2245820_2247374_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_009898036.1\|2247536_2248409_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009898038.1\|2248552_2249428_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_009898039.1\|2249514_2251170_-	APC family permease	NA	NA	NA	NA
WP_009898041.1\|2251349_2252213_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009898043.1\|2252322_2253462_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_009898044.1\|2253482_2254724_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_009898046.1\|2254775_2255561_-	drug:proton antiporter	NA	NA	NA	NA
WP_009898048.1\|2255557_2256739_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_009898050.1\|2256743_2258669_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_009898052.1\|2258671_2260735_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_009898053.1\|2260795_2261329_-	4-vinyl reductase	NA	NA	NA	NA
WP_009898055.1\|2261476_2262448_-	membrane dipeptidase	NA	NA	NA	NA
WP_009898057.1\|2262519_2263794_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.9e-105	53.4
WP_009898058.1\|2264202_2265228_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_009898059.1\|2265413_2266613_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.1e-11	26.8
WP_009900983.1\|2266958_2267975_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_025404203.1\|2268248_2269733_+	glycoside hydrolase 68 family protein	NA	NA	NA	NA
WP_011401416.1\|2269851_2271525_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	3.0e-55	31.0
WP_025404204.1\|2271976_2273245_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_025404178.1\|2273439_2275002_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_009896566.1\|2275054_2276020_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_009896564.1\|2276152_2277724_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_009896562.1\|2277720_2278998_-	glycosyltransferase	NA	NA	NA	NA
WP_009896560.1\|2279277_2280177_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_009907980.1\|2280749_2281025_-	hypothetical protein	NA	NA	NA	NA
WP_011401419.1\|2281341_2281767_-	hypothetical protein	NA	NA	NA	NA
WP_009893756.1\|2281789_2282149_-	hypothetical protein	NA	NA	NA	NA
WP_009893757.1\|2282207_2285702_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009893758.1\|2285698_2287426_-	OmpA family protein	NA	NA	NA	NA
WP_009893759.1\|2287508_2288870_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009893760.1\|2288866_2289460_-	hypothetical protein	NA	NA	NA	NA
WP_009893761.1\|2289465_2289855_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_009893763.1\|2289894_2290611_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_009893765.1\|2290613_2291684_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_009893766.1\|2291683_2293900_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_009893768.1\|2293903_2296192_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_011401423.1\|2296360_2298652_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_009893771.1\|2298642_2301486_-	type VI secretion system ATPase TssH	A0A2I7REQ1	Vibrio_phage	1.2e-61	27.0
WP_009893772.1\|2301488_2302478_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009901011.1\|2302474_2304337_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_5

2442482 : 2448548

Burkholderia_virus(28.57%)

integrase

attL 2437342:2437357|attR 2457703:2457718

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2437342:2437357	attL	NA	NA	NA	NA
WP_009893915.1\|2442482_2443055_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.7e-55	65.9
WP_011401460.1\|2443673_2444171_+	hypothetical protein	NA	NA	NA	NA
WP_011401461.1\|2444599_2445016_-	type II toxin-antitoxin system HicB family antitoxin	A0A0A8JBA5	Ralstonia_phage	1.2e-26	58.9
WP_009893919.1\|2445059_2445239_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.2e-18	74.6
WP_011401462.1\|2445518_2446046_+	hypothetical protein	A4JWV5	Burkholderia_virus	6.2e-60	66.1
WP_011401463.1\|2446042_2446777_+	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	3.0e-52	50.9
WP_009893924.1\|2446786_2447902_+	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	8.6e-176	80.4
WP_009893925.1\|2447972_2448548_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.3e-23	39.0
2457703:2457718	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_007651

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_007651_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007651_1

678645-678736

Orphan

Consensus_repeat	Method
TGTCGCTCGATGCGCTCGAGCGGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007651_1

>merge|NC_007651|1|678645-678736|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTCGTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGCTGTCGCTCGATGCGCTCGCGCGGCTC

>NC_007651|1|1|678645-678736|CRISPRCasFinder
TGTCGCTCGATGCGCTCGAGCGGCTC	GTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGC
TGTCGCTCGATGCGCTCGCGCGGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007651.1\|WP_009892883.1\|677268_678441_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_007651.1\|WP_009892881.1\|679642_680365_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|235119
NC_007651.1\|WP_009892876.1\|683988_685521_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NC_007651.1\|WP_009892878.1\|681550_682267_-\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NC_007651.1\|WP_009892896.1\|667101_668109_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NC_007651.1\|WP_009892889.1\|672160_672958_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NC_007651.1\|WP_009892892.1\|670161_671049_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|226910
NC_007651.1\|WP_009892898.1\|664985_667085_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_007651.1\|WP_009892877.1\|682380_683883_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NC_007651.1\|WP_009892864.1\|686643_687423_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_007651.1\|WP_009892890.1\|671489_672122_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NC_007651.1\|WP_009892880.1\|680435_681122_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319828
NC_007651.1\|WP_009892894.1\|668404_670120_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NC_007651.1\|WP_009892885.1\|676190_677123_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_007651.1\|WP_009892870.1\|685688_686060_+\|hypothetical-protein	unknown	unknown	unknown
NC_007651.1\|WP_025404068.1\|687661_689326_+\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482
NC_007651.1\|WP_004189182.1\|686126_686324_-\|phage-tail-assembly-chaperone	unknown	unknown	unknown
NC_007651.1\|WP_009892887.1\|673539_674616_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|376820
NC_007651.1\|WP_009892862.1\|689631_690465_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NC_007651.1\|WP_009892886.1\|674639_676013_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673

Protein	Function_ID	Function_description	E-value
NC_007651.1\|WP_009892883.1\|677268_678441_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.20259e-99
NC_007651.1\|WP_009892881.1\|679642_680365_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|235119	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional.	3.44814e-122
NC_007651.1\|WP_009892876.1\|683988_685521_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NC_007651.1\|WP_009892878.1\|681550_682267_-\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.57915e-71
NC_007651.1\|WP_009892896.1\|667101_668109_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NC_007651.1\|WP_009892889.1\|672160_672958_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	2.71354e-154
NC_007651.1\|WP_009892892.1\|670161_671049_-\|HlyC/CorC-family-transporter	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	9.20756e-141
NC_007651.1\|WP_009892898.1\|664985_667085_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_007651.1\|WP_009892877.1\|682380_683883_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NC_007651.1\|WP_009892864.1\|686643_687423_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.83635e-99
NC_007651.1\|WP_009892890.1\|671489_672122_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.09506e-57
NC_007651.1\|WP_009892880.1\|680435_681122_-\|HAD-family-hydrolase	gnl\|CDD\|319828	cd07526, HAD_BPGM_like, subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH. This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.5562e-48
NC_007651.1\|WP_009892894.1\|668404_670120_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NC_007651.1\|WP_009892885.1\|676190_677123_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.50493e-70
NC_007651.1\|WP_025404068.1\|687661_689326_+\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NC_007651.1\|WP_009892887.1\|673539_674616_-\|PhoH-family-protein	gnl\|CDD\|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	2.73217e-140
NC_007651.1\|WP_009892862.1\|689631_690465_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	1.52061e-10
NC_007651.1\|WP_009892886.1\|674639_676013_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0

>NC_007651.1|WP_009892883.1|677268_678441_+|MFS-transporter
MPLPLLALAISAFAIGTTEFVIMGLLPDVARDLAVTLPSAGLLVSGYALGVAAGAPLLAVLTSRMPRKAALQLLMAIFIAGNVLCALAQSYGMLMFARVVTSFAHGSFFGIGAVVAASLVSVDKRASAIALMFTGLTLANVLGVPFGTFVGQTLGWRATFWIVAALGVASLAGVAALVPKPRDAGRAALGRELRVLKEPQVWLALAMTVLGFGGVFVVFTYIAPILEDVTGFSPHAVSLVLVLFGVGLTIGNAIGGRLADRALMPSLLAILVALIAVMAVFAKTSHLPAAAAITVFVWGIAAFATVPPLQSRVVEKAAHAPNLASTLNIGAFNVGNAGGAWLGGVALSHGAPLDALPWVAAVVTLAALAVTVLAARLDTRVSPGAAAAAQ
>NC_007651.1|WP_009892885.1|676190_677123_-|LysR-family-transcriptional-regulator
MDRLGDIRLFVEAAELGSLSAAGRKLNLTPAAASARLAKLEAQVSTRLFERSTRRLRLTDEGRLYLNCCRQALQALDDADAMLQEGRNVVSGKVRLSSTADFGRNQLLDWLDEFNARYPDVTFSVTASDSSSNLWQDEIDLAIRFAAPPDGALIARPLAANRRVLCASPAFVDKYGTPKDPHDLARFPCNVITVASGPINVWRFTRGGDTQTYTVPLANAHETNDGGFTREWTIRGHGIALKSIWDVARDVRAGRLKVLLPEWRHQDAPLHAIHHSKRYMAPRVRVLLDFLVERFAQEEKALEDLLNACR
>NC_007651.1|WP_009892886.1|674639_676013_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTKKVYVKTFGCQMNEYDSDKMVDVLNAAEGLEKTDSPEDADIILFNTCSVREKAQEKVFSDLGRVRELKEAKPDLLIGVGGCVASQEGASIVARAPYVDLVFGPQTLHRLPQMIDARRESGRAQVDITFPEIEKFDHLPPARVEGPSAFVSIMEGCSKYCSYCVVPYTRGDEVSRPLDDVLTEIAGLADQGVREVTLLGQNVNAYRGALTAGAHEIADFATLIEYVADIPGIERIRYTTSHPKEFTQRLLDVYAKVPKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSLIRKLRAIRPNLSLSTDIIVGFPGETEADFDKTMALVHEMSYDTSFSFIYSPRPGTPAANLADDTPREVKLERLQHLQATIEENVARISQSMLGKVERILVEGPSRKDPNELAGRTENNRVVNFPAPLTAHARLIGQMIDVKINHAYPHSLRGELVLAHDDASAATH
>NC_007651.1|WP_009892887.1|673539_674616_-|PhoH-family-protein
MKTAQALEFTAPRDDNARLANLCGPLDENLRQIEQALDVTLSRRGHRIAIRGRGARIALAALEDFYNRARDPLSVDDIQLALVEARHPGNPRRNGNGNGDGSGQPEVDVRFRGDPDHPFDEPVVRIGDEPHADEAAPKLYTRRADLRGRTPAQREYLKQILSHDVTFGVGPAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRFTSADVVRHPLVARIVEAYDEFHAQHKDE
>NC_007651.1|WP_009892889.1|672160_672958_-|rRNA-maturation-RNase-YbeY
MKSSRSSKSARAEAAQPEFPRLSLFDAKGKVKTVEAQALRVDFADGRSLMFDLSGSSGDAAVAIVAQHTDPSLRATIALRPEHYDSVTVEAGADENPDFAHDATDDAGEDAPNREPELDLAVQYGDEIGDAQRRSLPKRKVIAEWLEPAIFSDAQFTVRFVGADEGRTLNHSYRHKDYATNVLTFAYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAHLLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR
>NC_007651.1|WP_009892890.1|671489_672122_-|gamma-glutamylcyclotransferase
MSRPAPARCPYPPSLGEARYLSDDELAASLDATLAGWDRTSDLWLFGYGSLIWNPGMPAVEALRGKVHGYHRGLYLWSRVNRGTPEQPGLVLALDRGGSCTGLAFRLAGGTAMPHLEALWRREMAMGSYRPAWLPCALAGGERVSALAFVMRRDVPTYTGKLTDDVVKAVFGCASGRYGTTLDYVSRTVAALRDSGMPDRALEALLARCR
>NC_007651.1|WP_009892892.1|670161_671049_-|HlyC/CorC-family-transporter
MNDSYPSRKSSDKPHEKRSLLERLTDFISPEPDSRAELLEILQDAHERNLIDADSLSMIEGVFQVSDLCARDIMVPRAQMDALNIADKPEDFIPFVLEKAHSRYPVYEDNRDNVIGVLLAKDLLRFYAEEEFDVRGMLRPAVFIPESKRLNVLLHDFRVNRNHLAIVVDEYGGVAGLITIEDVLEQIVGDIEDEYDFDEEAGNIIAAPDGRYRVRALTEIEQFNETFGTDFSDEEVDTIGGLITHHFGRVPHRGEKVRLGDLLFEIQRGDARQIHVLLVRRAPLAGRRSGSAGED
>NC_007651.1|WP_009892894.1|668404_670120_-|apolipoprotein-N-acyltransferase
MAEPISTRSQSSVSPTAAGRALPIWHYPSALLAGAANTLTFAPTPHGGWLQLAVFAWLFAQLTRTTSWKHAAATGGAFGFGNFISGIWWLYISMHVYGEMAAPLAGGALVLFCLYLSIYPAFSAGLWSFCAGHARNGKAADPRPFSPTWHGAFAFASAWAVGEWLRGTVLTGFPWLASGYAQVDGPLAGYASIVGVYGIGWVLALIAALGVQAIARAREGSNGLGGDRNNGGGNGRTDAPAGAVPLALRSPRVAAPALTAAALVALGPLLALVPWTVPANAPLTVRLLQGNVKQDIKFEEAGIQAAIAMYQKMITEKPADLVVTPETAIAVLIQELPEPFARAVRNFSDATDTAVLFGAVGGTVTNDGRIVDYTNSLYGVTPHSRDIYRYDKHHLVPFGEFIPWGFHWFVDLMKMPLGDFARGAPVQQPFIVRNQPVMADVCYEDIFGEEIAATIRDNPVSPGVLVNVTNLAWFGDTIALDQHLQIARMRSLETGRPMLRATNTGMTAAIDAHGRVIGRLKPFTIGSLDVRIEGTAGRTPYVTSGNATVLAMSLLLLAFGFAFGPRLRRRS
>NC_007651.1|WP_009892896.1|667101_668109_-|glycine--tRNA-ligase-subunit-alpha
MLTFQQIILTLQSYWDRQGCALLQPIDMEVGAGTSHVHTFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPENILDLYLGSLAALGFDLKQNDVRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGLERLAMYLQKVENVYDLIWTEWEEQGPNGPEIRRLTYGDVYHQNEVEQSTYNFEQANVELLFTFFNSYEAEAKRMIEAQLALPAYELVLKAGHTFNLLDARGAISVTERAAYIGRIRALSRLVAQAYYDSREKLGFPMIGNPVPGVPGLTTDAQEAAQPAWAPPLKAERKIDQD
>NC_007651.1|WP_009892898.1|664985_667085_-|glycine--tRNA-ligase-subunit-beta
MTQNHSASLLVELLTEELPPKALARLSDAFAEGIAQRLAARDLIEGELAFERYATPRRLAVVVQNVRAVAPERQVREKVLPVSVALDAQGKPTAPLAKKLAALGHPNLSIADLERAHDGKAEAFFVNYASPGATLAEGLQAALDETLAKLPIPKVMTYQRPDGTDVQFVRPVHRLSALHDDRIVPVCAFGIDAGDTTLGHRFLSDGLVAIQHANAYADTLRDKGRVLAHFAGRKEAIRAQLEANAGGDQVVMPEALLDEVTSLVEWPVVYPCRFEDEFLQVPQECLILTMQTNQKYFALTDAAGKLRSRFLIVSNIETKTPDEIVEGNERVVRPRLADAKFFFEQDKKKPLADRVPLLANVVYHNKLGSQLARIERLETLAGEIAPAIGADATVAIRAARLAKADLLTDMVGEFPELQGTMGTYYARHDGEAEDVAIACSEHYQPRFSGDALPTTPVSTAVALADKLETIVGIWGIGLAPTGEKDPFALRRHALGVLRLLLEKQLPLDLVWLLRTTYERFAAVPDVAESTDAIHAFFVERLRGLLRERGYTAGEVDAVLSLNPTRLDDIVARLDAVREFTRLAEAEALAAANKRISNILKKSESGANGAVQPALFVEAAEKALAEQLAEVTPRVQSQLEARAYTGALSALAALRAPVDAFFDGVMVNAEDPALRANRLALLSALHQQMNCVADISKLAA
>NC_007651.1|WP_009892881.1|679642_680365_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MSFPLPSKSAPADAFSDLPLLDVEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVAAERLTDETMALLIRECSGIVCLCLTDEKVRALALPPMAQLNESKNGTAFTVSIEARAGVTTGVSAADRVTTIRAAIADDAQPHDIVRPGHVFPLRAAPGGVLARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVEFRERLASLRERDACCEGVA
>NC_007651.1|WP_009892880.1|680435_681122_-|HAD-family-hydrolase
MLDHLICDCDGVLVDSEVIADRVLFDTLSAAFPAIDFTADAKAAFGQQTSRFLADLEARHGIAMPEDFLDTIEHNIETGLAQWLAPIAGVRDALTKIALPAAVVSNSRLARVRNSLKRAALTDVFGERVFSAEQVARPKPYPDVYLHAARTLGVEPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPGGYEDALRKMGIMRIMRSMDELPALVSAGMRGEFGDVQS
>NC_007651.1|WP_009892878.1|681550_682267_-|aquaporin-family-protein
MSPYIAEFIGTALLVLLGNGAVANVLLAKTKGKGADLIVIVMGWAMAVFVAVYVTASFSGAHLNPIVTISLALAGKFAWAKVGGYIAAQMLGGMAGALLVWLAYRQHFAKETDPDLKLAVFCTAPAIRSVTHNVLTEAICTFVLILGVLYLASPQVGLGALDALPVGLLVLGIGISLGGPTGYAMSPARDLSPRIMHALLPIPGKRDSDWRYAWVPVLGPLVGGVLAANLYLYLHTAH
>NC_007651.1|WP_009892877.1|682380_683883_-|glycerol-kinase-GlpK
MQDQYILALDQGTTSSRAMLFDRQGNIVSIAQKEFEQIYPRPGWVEHDPQEIWSTQAGVAAEAVTRVGLNGTSIAAIGITNQRETTIVWDRETGHPIYNAIVWQDRRTADFCDQLKAQGLSEKVRAKTGLPIDSYFSATKIRWILDNVEGAREKARQGKLAFGTVDSWLVWNFTKHELHVTDVTNASRTMLFNIHTLDWDDELLDALEIPRSMLPQVRASSEIYGPTKTTVFASKIPLAGIAGDQQAALFGQMCTSSGMVKNTYGTGCFLMMNTGETPIESQNNLVTTIAWQVDGKVNYALEGSIFIAGAVVQWLRDGLGIIKSASEIEALAAGVPHTDGVYLVPAFAGLGAPHWNARARGSLFGVTRGTTSAHLARAALDSIAYQSLDVLKAMEADSGIRIGELRVDGGASANNLLMQFQADLLGVDAVRPRVTETTALGAAYLAGLAIGYWKNVDELHSQWQLERRFAPSMQREQVSSCLCGWQRAVRAAKAWADDTQ
>NC_007651.1|WP_009892876.1|683988_685521_-|glycerol-3-phosphate-dehydrogenase
MTQQNRYDLLVVGGGINGAGIARDAAGRGLSVLLCEQDDLASHTSSSSTKLIHGGLRYLEYKEFGLVRKALQERETLLRAAPHIIWPLRFVMPHMPNLRPAWLIRIGLFLYDHLAKRELLPGSRGIDMRRHPAGAPLVDSIKRGFVYSDGWVDDARLVVLNALDAQERGARILTRTKLVSAERRDGQWHARLQRADGSTLDVCARAVANAAGPWVGDVLHGALGRGAQHSVRLVKGSHIVTRRLFDHDHAYIFQNPDKRIIFAIPYERDFTLIGTTDVEYRDDPSRVAIDRDETRYLCESINRYFKRKISPADVCWTYSGVRPLLEDENADNPSAVTRDYRLELDGGDGAPLLSVFGGKITTFRKLAEEATDMLGGALGASRGAWTAGVPLPGGDIADARFAPFAEAFAKRHPWLPAALARRYARAYGTRAERVIGGAKSLAELGAELAPGLYEAELRYLRDAEWASCADDVLWRRSKLGLHVAPGTLDAVTAALDAWFGAAREAASAAH
>NC_007651.1|WP_009892870.1|685688_686060_+|hypothetical-protein
MRTMIAAGALALLAGCAGGPAMFGGWGGPSFADLQRSCGDVRDYGEDAQAVYSAVFDAWVAKRHGKLTDARFCAFENELAQHRAALGTSTDPAERGRWVSYLNDARARALSWRAAVDPSLRGG
>NC_007651.1|WP_004189182.1|686126_686324_-|phage-tail-assembly-chaperone
MLSPHEFATLLLVKDAPDQADMDRDELDALLERQLVKLEALGSGRKYCVTEIGDAALRSIKLRYS
>NC_007651.1|WP_009892864.1|686643_687423_-|DeoR/GlpR-transcriptional-regulator
MTRDPRLTLNARQQELLEWVQRDGFVTVDDLAAHFNVTPQTIRRDVNWLADLNLLRRYHGGASLPTSSENVSYTARQRMFHDEKRRIAALAASHIPDQASLFINLGTTTEEVARALNRHRGLRVITNNLNVASMMSGYPECEVLITGGIVRPWDKGIVGELAIDFIRQFRVDYAIIGTSSIESDGTLRDFDTREVRVAEAIIQHARTVYLVTDHSKFGRPALVRQGHLNQIHALFTDKPLPDEMAETIAQAGTQVYVAD
>NC_007651.1|WP_025404068.1|687661_689326_+|gamma-glutamyltransferase-family-protein
MTLHSNISGVPFSWRNPYLTTRVPVFARNVVSTSHPLAAQAGLRMLWKGGNAVDAAIAAAAAITVVEPVSCGLGGDAFALVWDGAKLHGLNASGVAPAAWSVDYFRRRHGDAGNGLARQPTRGWDTVTVPGVIAGWEALHAKFGSLPFADLLEPAIELAERGHAVAAVVAHKWAAAVPELNGQPGFAETFMPRGRAPEVSELVRLPGHAKTLRTIAAEGARAFYEGSIAESIAGFFRDGGGALTADDLRAYRPEWVEPIGKDFRGYTVHEIPPNGQGIAALIALGIVERFGLDDLPLDSAEAQHVQIEAMKLAFADVYRYVADPRAMALTPAQMLDDAYLDARAKLIDVTRATHFSFGMPRAGGTIYLSAADERGMMVSFIQSNYMGFGSGLVVPGMGIALQNRGCGFSMDPTSPNVVEGGKRPFHTIIPAFVTQQAGGARHAVMSFGVMGGDMQPQGHLQTIVRMLGYGQQPQAACDAPRWKVSRSFTLDVEAALGASVVDALAARGHTIQAIDDPYMDFGSGQFIWRLDRDEPDRGYVAASDSRRDGLAAGF
>NC_007651.1|WP_009892862.1|689631_690465_+|ferritin-like-domain-containing-protein
MLADSDTTHEMPWRIEDIDLTRIDRQRAAANEDLLLLLCAASFIESGSDLYTSNLSQFFDDDPEVSAWLNTEWEHEELQHGRALKAYIAHVWPEFDWDLAFADFFDEYSKTCSLEAFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKEITDNIRTDEVRHYKHFFRYFKKYNKVEGNGRLAVLGALMRRVLEIRNEDSEIALRHVFAIRYPDRAGDSAYCRERTARVNALVRRNLSADMCVKMLLKPLDLPAKIQPGVHYPLTKLTQHVFFR

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Crispr_ID: NC_007651_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007651_2

2346754-2346853

Orphan

Consensus_repeat	Method
GCGAAGTGCGTGCGCGGCGGCGCGCATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007651_2

>merge|NC_007651|2|2346754-2346853|CRISPRCasFinder
GCGAAGTGCGTGCGCGGCGGCGCGCATGCGGCGGTCAATGCGGTGGCGAAGCGGGGGGGGCGATGCGGGGGAGCGAAGCGCGTGCGCGGCGGCGCGCATG

>NC_007651|2|2|2346754-2346853|CRISPRCasFinder
GCGAAGTGCGTGCGCGGCGGCGCGCATG	CGGCGGTCAATGCGGTGGCGAAGCGGGGGGGGCGATGCGGGGGA
GCGAAGCGCGTGCGCGGCGGCGCGCATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007651.1\|WP_127462262.1\|2349739_2350381_-\|hypothetical-protein	unknown	unknown	unknown
NC_007651.1\|WP_009890518.1\|2346166_2346520_-\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
NC_007651.1\|WP_009890512.1\|2344360_2344699_+\|hypothetical-protein	unknown	unknown	unknown
NC_007651.1\|WP_011400919.1\|2352673_2353894_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
NC_007651.1\|WP_009890520.1\|2347152_2348565_+\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NC_007651.1\|WP_011402254.1\|2351822_2352311_-\|hypothetical-protein	unknown	unknown	unknown
NC_007651.1\|WP_009890543.1\|2354564_2355770_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_007651.1\|WP_009890510.1\|2343461_2343974_+\|ureidoglycolate-lyase	unknown	unknown	gnl\|CDD\|179606
NC_007651.1\|WP_009890507.1\|2340737_2341691_+\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797
NC_007651.1\|WP_009890522.1\|2350435_2350645_-\|dodecin-domain-containing-protein	unknown	unknown	gnl\|CDD\|377810
NC_007651.1\|WP_038707963.1\|2341690_2342212_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|225736
NC_007651.1\|WP_038707961.1\|2350733_2351672_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NC_007651.1\|WP_009890509.1\|2342451_2343465_+\|allantoicase	unknown	unknown	gnl\|CDD\|237319
NC_007651.1\|WP_009890505.1\|2339728_2340592_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226611
NC_007651.1\|WP_004521233.1\|2355883_2356564_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NC_007651.1\|WP_004192898.1\|2353949_2354381_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569
NC_007651.1\|WP_009890516.1\|2344914_2346117_-\|membrane-protein	unknown	unknown	gnl\|CDD\|368779
NC_007651.1\|WP_009890502.1\|2337376_2338072_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_007651.1\|WP_011402249.1\|2338227_2339718_+\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271404
NC_007651.1\|WP_009890521.1\|2348754_2349684_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152

Protein	Function_ID	Function_description	E-value
NC_007651.1\|WP_009890518.1\|2346166_2346520_-\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	3.76465e-65
NC_007651.1\|WP_011400919.1\|2352673_2353894_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.7698e-91
NC_007651.1\|WP_009890520.1\|2347152_2348565_+\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NC_007651.1\|WP_009890543.1\|2354564_2355770_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.23436e-06
NC_007651.1\|WP_009890510.1\|2343461_2343974_+\|ureidoglycolate-lyase	gnl\|CDD\|179606	PRK03606, PRK03606, ureidoglycolate lyase.	4.0966e-102
NC_007651.1\|WP_009890507.1\|2340737_2341691_+\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0
NC_007651.1\|WP_009890522.1\|2350435_2350645_-\|dodecin-domain-containing-protein	gnl\|CDD\|377810	pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.	1.01699e-32
NC_007651.1\|WP_038707963.1\|2341690_2342212_+\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|225736	COG3195, COG3195, Uncharacterized protein conserved in bacteria [Function unknown].	3.08249e-76
NC_007651.1\|WP_038707961.1\|2350733_2351672_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.08475e-79
NC_007651.1\|WP_009890521.1\|2348754_2349684_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.40332e-127
NC_007651.1\|WP_009890505.1\|2339728_2340592_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	4.21918e-80
NC_007651.1\|WP_004521233.1\|2355883_2356564_-\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	5.00746e-22
NC_007651.1\|WP_004192898.1\|2353949_2354381_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	2.50619e-80
NC_007651.1\|WP_009890516.1\|2344914_2346117_-\|membrane-protein	gnl\|CDD\|368779	pfam06181, Urate_ox_N, Urate oxidase N-terminal. Cytochrome c urate oxidase (Uox) PuuD is involved in purine degradation. In contrast with soluble Uox it is a membrane protein with an 8-helix transmembrane N-terminal domain and a C-terminal cytochrome c.	0
NC_007651.1\|WP_009890502.1\|2337376_2338072_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.67953e-47
NC_007651.1\|WP_011402249.1\|2338227_2339718_+\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
NC_007651.1\|WP_009890509.1\|2342451_2343465_+\|allantoicase	gnl\|CDD\|237319	PRK13257, PRK13257, allantoicase; Provisional.	0

>NC_007651.1|WP_009890518.1|2346166_2346520_-|hydroxyisourate-hydrolase
MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGTYELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS
>NC_007651.1|WP_009890516.1|2344914_2346117_-|membrane-protein
MEGFIIDWLNLAIRWLHVVAAIAWIGESFYFVALDNSLKPPKDAQLKSRGVFGELWHVHGGGFYNMQKYLVAPPEMPEDLHWSKWPSYTTWMSGFGLFFVLYLLAPNTYLIDRNVLDMGPVVAVASALGFLLAGWIVYDCACRMLGGRDKLLGVFVGLYVIAAAYIACHVFSGRAAYLIVGAMLATIMTANVFFVIIPGQRKMVDKLLKGETPDPIYGKRGKQRSVHNTYFTLPVVFAMLSNHYAMTYTNQYNWIVLVVIMLAGALIRQFFVMRHRGQQLWYLPLGGVALMLLALVTTMPKPIAPEAQAANAPNVPKLAIKDVAPILQQRCVACHSAKPTLVGSAPAGVMFDTSDEIARNAPRIYQQAVQLKAMPIGNLTHMTDDERTKIAAWFESGATK
>NC_007651.1|WP_009890512.1|2344360_2344699_+|hypothetical-protein
MVIVGCIYLLVFAPLVYVLFLLHGMTIRLGGACLGIAAWVALSIAAIGIVRGWAWSRHWLIGGLIGLWIVSSNAGANGGDVAARGLDYICVALPLFTRRSTAFFRSRRDIEA
>NC_007651.1|WP_009890510.1|2343461_2343974_+|ureidoglycolate-lyase
MNTLAIEPLTRAAFAPFGDVIETAGAKQIPINLGTTVRFHDLARIDVADEGGRPLVNLFRGQPRTLPFEVTMLERHPLGSQAFIPLTDRPYIVVVAPAGVLDPPKIRAFVTSGWQGVNYAKGVWHHPLIALGGVSDFIVVDRGGGGGNLDEQDLAGSLWLTEDALLAVSA
>NC_007651.1|WP_009890509.1|2342451_2343465_+|allantoicase
MALPLSDPNAPEFTRRYVNLADPRLGAQALEASDDFFAPKERMLSPEPAVFIPGKYDDHGKWMDGWETRRKRTTGYDWCIVKLARPGVIKGFDIDTSHFTGNFPPAASIEAAHVPDGVPNEATKWVEVVPSTTLQGNSHHYVEARDANAYTHLRVNIYPDGGIARLRVYGQPQLDWAGASRSELFDLAAMDNGGYVVAVNNQHFGLASNMLLPGRGVNMGDGWETRRRREPGNDWAIVALAQPGVIRKIEVDTAHFKGNFPDRCSVQAAYVTGGTDSSLVTQAMFWPVLLGEQKLQMDKQHVFEAELAALGPVTHVRLNIIPDGGVSRLRVWGTLDK
>NC_007651.1|WP_038707963.1|2341690_2342212_+|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MKAMRYTLEQLNAMSTEAFVAALSGIFEHSPWVAEAAAAARPFSSIDALHRTMRDAVDAAGDARQLALINAHPELAGKAAVRGELTAESTREQSGAGLDRCTQEEFDKLQRLNRAYREKFGFPFILAVRGYDRHGIIENFEARIDHTQDEELRASLGQIYRIARFRLDDLIDA
>NC_007651.1|WP_009890507.1|2340737_2341691_+|allantoinase-PuuE
MAFDPNYPRDLVGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPASEQFLSEIVGAAAYPARHMSMESIYEYGSRAGVWRILREFDKRGLPLTVFGVGMAIERHPELARAFVEFGHEIACHGWRWIHYQDMTPEREAEHMKLGMEAIERVTGVRPLGWYTGRDSPNTHRLVAEYGGFLYDSDHYGDDLPFWMDVEVPGGARAPQLIVPYTLDANDMRFATPQGFNTADHFFHYLRDAFDVLYEEGDEAPKMMSIGMHCRLLGRPGRFRALQRFLDHIERHDRVWVARRVDIARHWREHHPYRPHARREGDA
>NC_007651.1|WP_009890505.1|2339728_2340592_+|aspartate/glutamate-racemase-family-protein
MKIKLINPNTTQRMTDAMGRCAREVAAAGTAIVAVSPAMGPPSIEGHYDEALATPGLLAEVAAGERDGFDGYVIACFGDPGLYAARELARGPVIGIAEAAMHAASVLAPGFSVVTTLARTCGMAWHLAERYGMKRFCRNVRATDVAVLDLDRPGSAARRVIVDECRRALDEDGTDAIVLGCAGMAEFAHEIEAAIGAPVVEGVTAAVKWAEALIALKLATAKRGDFARPLAKRYDGEFARFSPDGAFALGAEAAAGAAVGPDAAAPGAAIQDARSPDAFAQPHIHSV
>NC_007651.1|WP_011402249.1|2338227_2339718_+|NCS1-family-nucleobase:cation-symporter-1
MAQFSVAQQSASYRPNEGRPGDPDGGAAMPAGYSKRLYNEDLAPLANQNWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLAALIVGISIVNVLCNLIAKPSQQLGVPYPVACRATFGVLGANVPAVIRGLIAIAWYGIQTYLASSALVIVVLKFFPQWMPYADVHRYGFLGLSALGWAGFMLLWVLQAFVFWNGMETIKKFIDFAGPAVYVVMFVLAGYMVWRAGWRNIGLDLGGVKYHGAEVLPVMVTAISLVVSYFSGPMLNFGDFSRYCRSYGSVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGQLITDPVETVGRIDHPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPRLISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDVLGSFIGPLYGVLIVDFYLVKRGALRRDDLYTTSADGAYWYRDGVNRRAVAALLPAAAIAVACVMVPAPSGLANFSWFIGAALGGAFYRALAKA
>NC_007651.1|WP_009890502.1|2337376_2338072_+|GntR-family-transcriptional-regulator
MTKKDSALTGASPESIAERIRTAILEHRLAPGTKLTEAQLCEVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIVELAVMERLATGPGAKRLKGVAATIDKERHAFERRDFPAWIRLSGEFHTELAALTGNTVLRDCLGGLVARSTLMSALYESHGRSPCSFDDHAQILAALEAGDAKRAAQLMAHHLQHVELRMLDRPAQGAVDLREVFGHSG
>NC_007651.1|WP_009890520.1|2347152_2348565_+|8-oxoguanine-deaminase
MERYSSARAGAQSQSPNRPRTLVVKHADVLVTMDGARRELRDAGLYVEDNRIVAVGPSAELPAQADEVLDLRGHLVIPGLVNTHHHMYQSLTRAIPAAQNAELFGWLTNLYRIWAHLTPEMIEVSALTAMAELLLSGCTTSSDHLYIYPNGSRLDDSVAAAQRIGMRFHASRGSMSVGQRDGGLPPDSVVEREPDILRDTQRVIETYHDEGRYAMLRVVVAPCSPFSVSRGLMRDAAALAREHRVSLHTHLAENANDVAYSRETFGMTPAEYAEDLGWVGRDVWHAHCVQLDESGIALFARTGTGVAHCPCSNMRLASGIAPVARMRVAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTARDALEIATLGGARVLNRDDIGALAPGMAADFVAFDLRTPQFAGALHDPVAALVFCAPSQAAYSVVNGRVVVREGRLTAFEIEPLVERHNALAKALCEAAR
>NC_007651.1|WP_009890521.1|2348754_2349684_-|LysR-family-transcriptional-regulator
MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALRRLRDITGDPLLVRGKSGMVPTEYGLRLLEPVQNALREIERIKFQQHNFDPATSIRCYRIGCPDYLNVLFVPTVVERFRQAAPNATLEFHSLGPAFDYELALEDGKLDIVVGNWPEPPEQLHLSNLFVDEIVCLMSNAHPFAKRGGLTLDQYLNAPHLAPTPYSVGQRGAIDVHLARERLKRHVVVTLPYFNLAPYVLVKSDLIFTTTRLFADHYAKFLPLSVVPAPLDFPPMQYYQLWHERCHYSDEVRWLRGLVAEATRTLIDA
>NC_007651.1|WP_127462262.1|2349739_2350381_-|hypothetical-protein
MERSFAREATVAPRHTRNACRILPLPRCGIRRNRHASRRTSRVSGERSSCPHDDLRRTARRRSFTAFRTAGPLAEIDAESATPSRATHNDNIAPTRIDTRDAPVRRADVRGRRVTGLASFARRRIDLFSSLVSPSSLAIHFLPPFLPPLFRTPFRIPFCAPFRHPFRDPHRRAFARLHRKLVTRRPRRSPVANRPRRARRLECAALDAPLCPY
>NC_007651.1|WP_009890522.1|2350435_2350645_-|dodecin-domain-containing-protein
MNDHVYKLLELTGSSRQSSDDAIRNAISKAAKTMRNLHWFEVTDMRGHIEGDQVIHWQVTLKVGLRIED
>NC_007651.1|WP_038707961.1|2350733_2351672_+|NAD(P)-dependent-oxidoreductase
MMGGNFNRYSNERKGEDVDVGFCGPGLMGAPMIRHLLSAGHRVHVWNRTRAKADALAAHGAQVVDTPAELAARAQTVMLCVLDAQAVGDVVFGASGVLAGDAAARCVTRIVDHSSIPPAATRAYAARAAALGASWVDAPVSGGVPGAEAGTLAVMAGGAQADVDAVRGLIGAYASRVTHLGDAGAGQTAKLCNQAIVTASVTAIAEAVGLAQASGIDAARLAEALAGGWADSVLLQTFVPRMTSTGHPPIGALKTFQKDVDAIADAARDAGAVMPVAATVQQVLRLGAAMGLAQADFAAFIDIVRPQAKRGE
>NC_007651.1|WP_011402254.1|2351822_2352311_-|hypothetical-protein
MRMPHFLQLFLRRVFMSFPKKRRRAQPDGQESFLAVLRHAKPFAQLDTKIARARAQDEPVLYAHVLPGLDVLLCSVRGAQPPYPAIVELRKRCIESIANALEQPLDGLENGGYWYEANGFGFLVFASRARARILPEFGAGVKAGLRSGIGQPNAGDTTPRSL
>NC_007651.1|WP_011400919.1|2352673_2353894_+|ISL3-family-transposase
MLDRKALQALGCWTGYRLERVEWPQGDSRTLSLYLKPVSRIMYCEQCGARCQQIHETTVRRVRDLPLFEYRVVLHVPRRRVWCERCGAARLEKLDWLGRYQRVTERFAQACEKLLQAASVQAVAAFYDLGWHTVKSIDKMRLRARVAEPDWSTIRYLAMDEFALHKGHRYATVVVDPIGRQVLWVGPGRSRETARAFFEQLPEGVAERIEAVAIDMTTAYELEIKEQCPQAEIVFDLYHVVAKYGREVIDRVRVDQANQLRHDKPARKVLKSSRWLLLRNRHNLKPEQAVHLKELLAANQSLLCVYVLRDELKRLWFYRKPACAEKAWGQWFEQAQQSGIAALQKFAQRLQGYWHGIVARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEQYFFLKIRAAFPGIPR
>NC_007651.1|WP_004192898.1|2353949_2354381_-|large-conductance-mechanosensitive-channel-protein-MscL
MSIIKEFKEFAVKGNVMDLAIGVIIGGAFSKIVDSVVKDLIMPVIGVLTGGLDFSNKFVLLGQIPASFKGNPESFKDLQAAGVATFGYGSFITVLINFIILAFIIFLMVKFINKLRKPEEAAPAATPEDVLLLREIRDSLKQR
>NC_007651.1|WP_009890543.1|2354564_2355770_-|tetratricopeptide-repeat-protein
MKKLLAAVGLSLILVSAAANAAVPSLQQIQQSIAQGNWQRADAQLSQVIDAYPDNARARYLYGQVLDREGRPAEALAQIERAKSLDPQLRFTDPSRFAQTEARVRADARRATSAQSSRSATSGGMLVAPQTQGQAQSQFAAAPAAPAHRGPSAGMWIGFAVLIGAIVLVLRRTLRRARSADDQRAGDERRAQLKRATDVLNDVRPLKLDARLSTAPGAGALNGEIEALEAQARELVETLSNGQNPVPPYRLDELEKQFASLKARVEGRPDPGAASAAANAPGQTGSVFAQEADRLTGAQGQPPYSPYPPQPQQQPPVVIQQGGGFGGGMGGLLTGVLLGQAMSNGRDRVIEREVIVDDEARRRAGADPGIDFGQGDSWDSGGSDGGGIDLGSSGDDWSNNG
>NC_007651.1|WP_004521233.1|2355883_2356564_-|PspA/IM30-family-protein
MSLFDSISRTIKGLLNDAADSVQDPSRDARQIVRELDDSIGRAENSLIEIEAQVATQRSKRDTADERAKKYEDGAKRALQSGDEALAREALAAQANAEAERDALARELDTLEPSVDKLKGQIADMRARRNDLNARSNILQAKQEIAQAKDVAATALGGIGGKNLSEDFQKLEDKVALSNARSDARLNSADTNSGRALDDKLAALNKGPSVEDRLEALKKQLNTPAQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

868799 : 879681

Streptococcus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009892620.1\|868799_870914_-	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-56	26.8
WP_011401863.1\|871177_871693_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	1.5e-13	41.2
WP_080511442.1\|871888_872104_-	hypothetical protein	NA	NA	NA	NA
WP_009892615.1\|872364_872943_-	pseudouridine synthase	NA	NA	NA	NA
WP_009892614.1\|873207_874467_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.8e-12	63.0
WP_009892613.1\|874628_876224_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_004196460.1\|876335_876539_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_009892611.1\|877069_877384_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
WP_009892610.1\|877380_879681_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.1e-167	41.9

DBSCAN-SWA_2

1041049 : 1048830

uncultured_Caudovirales_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011400919.1\|1041049_1042270_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.0e-238	99.0
WP_009892406.1\|1042372_1042975_+	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	3.1e-47	50.0
WP_009892405.1\|1042978_1043545_+	hypothetical protein	A0A1B1IRK9	uncultured_Mediterranean_phage	3.8e-31	47.0
WP_009892404.1\|1043468_1044938_+	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	8.2e-126	46.7
WP_009892403.1\|1044969_1045608_+	hypothetical protein	NA	NA	NA	NA
WP_099005207.1\|1045620_1046378_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_009892400.1\|1046408_1046549_+	hypothetical protein	NA	NA	NA	NA
WP_009892399.1\|1046664_1046937_+	hypothetical protein	NA	NA	NA	NA
WP_009892398.1\|1046943_1047363_+	glycoside hydrolase family protein	A0A1Q1PW74	Pseudoalteromonas_phage	1.4e-22	45.5
WP_080511450.1\|1047359_1047605_+	hypothetical protein	Q6J1Q4	Burkholderia_virus	1.7e-07	57.7
WP_009891862.1\|1047570_1048830_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4

DBSCAN-SWA_3

1466645 : 1475876

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889255.1\|1466645_1468598_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.2e-148	49.5
WP_009889258.1\|1468861_1469992_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.8e-24	38.0
WP_009889260.1\|1470023_1472033_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	1.7e-52	35.2
WP_025369782.1\|1472208_1473024_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	4.4e-36	32.9
WP_009889263.1\|1473088_1473772_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	3.3e-05	26.0
WP_009889265.1\|1473768_1474296_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_009889266.1\|1474331_1475876_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	31.2

DBSCAN-SWA_4

1625455 : 1644853

Stx2-converting_phage(90.91%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889500.1\|1625455_1627027_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_009889515.1\|1627056_1627404_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009888727.1\|1627400_1627808_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_127446407.1\|1627857_1628289_-	hypothetical protein	NA	NA	NA	NA
WP_080511473.1\|1628759_1629701_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_009889504.1\|1629836_1630751_-	WYL domain-containing protein	NA	NA	NA	NA
WP_009889505.1\|1630802_1631429_+	hypothetical protein	NA	NA	NA	NA
WP_127446406.1\|1631425_1631902_+	hypothetical protein	NA	NA	NA	NA
WP_127446405.1\|1631945_1632374_+	hypothetical protein	NA	NA	NA	NA
WP_127446404.1\|1632364_1633696_+	hypothetical protein	NA	NA	NA	NA
WP_011402067.1\|1633822_1636585_+	ATP-dependent helicase	A0A068EQC7	Bacillus_phage	2.1e-34	22.4
WP_009889514.1\|1636609_1637209_+	HAD family hydrolase	NA	NA	NA	NA
WP_009888727.1\|1637391_1637799_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_011402068.1\|1637795_1638143_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.1e-40	71.0
WP_011402069.1\|1638172_1639744_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-148	53.2
WP_009889515.1\|1639847_1640195_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_011402070.1\|1640224_1641796_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-148	53.4
WP_080511475.1\|1642063_1642858_-	TniQ family protein	NA	NA	NA	NA
WP_009889500.1\|1642904_1644476_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_009889515.1\|1644505_1644853_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0

DBSCAN-SWA_5

1850937 : 1859654

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009889852.1\|1850937_1852338_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.1e-79	38.7
WP_080511617.1\|1852369_1853293_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.3e-15	27.9
WP_009889856.1\|1853350_1854343_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	9.1e-28	30.9
WP_009889858.1\|1854414_1854732_+	competence protein ComE	NA	NA	NA	NA
WP_009904404.1\|1855066_1855969_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	4.3e-53	39.9
WP_009889862.1\|1856063_1857305_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009889864.1\|1857483_1858407_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	3.2e-43	36.2
WP_009889867.1\|1858742_1859654_-	alpha/beta hydrolase	A7K906	Acanthocystis_turfacea_chlorella_virus	1.6e-10	25.7

DBSCAN-SWA_6

2159660 : 2175426

Burkholderia_virus(33.33%)

tail,integrase,transposase

attL 2152787:2152802|attR 2165334:2165349

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2152787:2152802	attL	NA	NA	NA	NA
WP_009890225.1\|2159660_2162342_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.2e-28	24.0
WP_011402202.1\|2162501_2163803_+\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	3.0e-148	58.9
WP_009890227.1\|2163753_2163996_-	AlpA family phage regulatory protein	C7BGF0	Burkholderia_phage	9.3e-19	59.2
WP_009890228.1\|2164004_2164478_-	hypothetical protein	B5TA88	Burkholderia_phage	3.0e-05	71.4
WP_004531944.1\|2164486_2164816_-	hypothetical protein	NA	NA	NA	NA
WP_080511629.1\|2165852_2165990_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	7.8e-07	56.8
2165334:2165349	attR	NA	NA	NA	NA
WP_009890233.1\|2165999_2167052_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	9.2e-79	44.8
WP_004533694.1\|2167127_2167322_+	hypothetical protein	NA	NA	NA	NA
WP_004539628.1\|2167314_2167812_+	lysozyme	A4JX20	Burkholderia_virus	2.2e-67	78.2
WP_004533951.1\|2167811_2168357_+	lysozyme	Q8W6S5	Burkholderia_virus	1.7e-81	94.5
WP_009890252.1\|2168499_2169288_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	1.0e-151	97.3
WP_009890254.1\|2169328_2170039_-	hypothetical protein	A4PE26	Ralstonia_virus	4.1e-38	41.5
WP_162486716.1\|2170050_2170719_-	hypothetical protein	NA	NA	NA	NA
WP_025404102.1\|2171003_2171507_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	3.0e-19	40.1
WP_009910666.1\|2171509_2171935_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	8.4e-15	47.0
WP_009890263.1\|2171996_2172278_-	hypothetical protein	NA	NA	NA	NA
WP_009890265.1\|2172277_2172742_-	hypothetical protein	C7BGE3	Burkholderia_phage	9.7e-49	60.4
WP_009890267.1\|2172822_2173392_+	DUF159 family protein	A4JX27	Burkholderia_virus	4.5e-88	81.8
WP_127446392.1\|2173689_2174160_+	hypothetical protein	NA	NA	NA	NA
WP_167316233.1\|2174227_2175426_-\|transposase	IS3-like element ISButh1 family transposase	A0A1B0Z042	Pseudomonas_phage	3.9e-102	65.2

DBSCAN-SWA_7

2999644 : 3072734

Stx2-converting_phage(23.08%)

coat,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009891643.1\|2999644_3002512_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	6.7e-148	39.3
WP_009891646.1\|3002598_3003483_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-69	48.3
WP_009891648.1\|3003559_3004165_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_009891650.1\|3004254_3006648_-	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_009891653.1\|3006658_3008023_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_004193573.1\|3008019_3008724_-	response regulator transcription factor	NA	NA	NA	NA
WP_009891660.1\|3009014_3009401_-	hypothetical protein	NA	NA	NA	NA
WP_004193727.1\|3009659_3009890_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_009891663.1\|3010049_3011087_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_009891664.1\|3011099_3012119_-	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_009891665.1\|3012111_3012993_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_009891666.1\|3013238_3014288_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009891668.1\|3014388_3015534_+	ABC transporter permease	NA	NA	NA	NA
WP_009891669.1\|3015546_3016347_+	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-14	29.4
WP_011402440.1\|3016360_3018361_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_011402441.1\|3018371_3020375_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
WP_009891675.1\|3020371_3021292_+	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_009891677.1\|3021291_3022095_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_009891678.1\|3022159_3022864_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-09	31.8
WP_009891679.1\|3022860_3025086_-	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A2R8FFL6	Cedratvirus	1.6e-08	27.9
WP_009891680.1\|3025078_3026014_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_009909721.1\|3026018_3026468_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_009891683.1\|3026691_3027840_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_009891685.1\|3028029_3028365_+	YbjQ family protein	NA	NA	NA	NA
WP_009891687.1\|3028457_3029012_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_011402443.1\|3029474_3030983_-	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-10	25.2
WP_025988538.1\|3031534_3033028_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_009891696.1\|3033172_3034138_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009891699.1\|3034576_3037201_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.1e-80	39.2
WP_009891700.1\|3037642_3038863_+	CoA transferase	NA	NA	NA	NA
WP_009909736.1\|3038952_3039759_+	hypothetical protein	NA	NA	NA	NA
WP_038709125.1\|3040289_3040499_-	ornithine acetyltransferase	NA	NA	NA	NA
WP_009891706.1\|3040779_3042489_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	2.8e-186	56.9
WP_009891707.1\|3042783_3043260_-	NUDIX hydrolase	A0A2I6PFL2	Proteus_phage	2.0e-20	41.3
WP_009891709.1\|3043278_3043665_-	hypothetical protein	NA	NA	NA	NA
WP_009891711.1\|3043951_3046051_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_009905872.1\|3045976_3046156_+	hypothetical protein	NA	NA	NA	NA
WP_009891712.1\|3046152_3047013_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_009891714.1\|3047058_3048450_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_009891716.1\|3048683_3050267_+	acid phosphatase	NA	NA	NA	NA
WP_009891718.1\|3050491_3051685_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_009891719.1\|3051702_3052545_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_154660009.1\|3052789_3053032_+	hypothetical protein	NA	NA	NA	NA
WP_009891722.1\|3053242_3053875_-	response regulator transcription factor	NA	NA	NA	NA
WP_025369426.1\|3053875_3055948_-	response regulator	A0A1V0SGR3	Hokovirus	5.0e-12	25.9
WP_009891727.1\|3056358_3057324_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891728.1\|3057339_3059751_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_009891730.1\|3059795_3060635_-	molecular chaperone	NA	NA	NA	NA
WP_009891731.1\|3060652_3061177_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891732.1\|3061259_3061820_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_025369429.1\|3061872_3062418_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_009891734.1\|3063220_3064114_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011402450.1\|3064529_3065819_+	MFS transporter	NA	NA	NA	NA
WP_009891736.1\|3065863_3066790_+	amidohydrolase family protein	NA	NA	NA	NA
WP_009891740.1\|3067275_3067557_+	H-NS histone family protein	NA	NA	NA	NA
WP_009891742.1\|3067756_3068020_-	hypothetical protein	NA	NA	NA	NA
WP_009891744.1\|3068769_3070083_-	divalent metal cation transporter	NA	NA	NA	NA
WP_009889500.1\|3070381_3071953_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_009889515.1\|3071982_3072330_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	72.0
WP_009888727.1\|3072326_3072734_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2

DBSCAN-SWA_8

3102517 : 3159966

Stx2-converting_phage(27.27%)

integrase,plate,transposase

attL 3103946:3103961|attR 3124687:3124702

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009891794.1\|3102517_3104368_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
3103946:3103961	attL	NA	NA	NA	NA
WP_009910381.1\|3105860_3106079_+	hypothetical protein	NA	NA	NA	NA
WP_009891798.1\|3106840_3108319_+	PHB depolymerase family esterase	NA	NA	NA	NA
WP_009891799.1\|3108622_3108958_-	H-NS histone family protein	NA	NA	NA	NA
WP_009891801.1\|3109274_3110561_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.3e-172	71.8
WP_011402462.1\|3110693_3111599_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.7e-129	75.1
WP_009891805.1\|3112642_3114082_+\|integrase	integrase family protein	NA	NA	NA	NA
WP_009891806.1\|3114356_3114827_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009891810.1\|3114997_3116917_-	ATP-dependent helicase	NA	NA	NA	NA
WP_009891812.1\|3116913_3119268_-	AAA family ATPase	NA	NA	NA	NA
WP_011402463.1\|3119692_3121429_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_165981570.1\|3121453_3121678_-	CDI system lipoprotein BcpO	NA	NA	NA	NA
WP_011402464.1\|3121705_3122518_-	contact-dependent inhibition immunity protein BcpI	NA	NA	NA	NA
WP_011402465.1\|3122514_3131958_-	contact-dependent inhibition toxin BcpA	A0A0R6PJK4	Moraxella_phage	9.9e-31	31.4
3124687:3124702	attR	NA	NA	NA	NA
WP_059844718.1\|3132885_3133113_+	hypothetical protein	NA	NA	NA	NA
WP_009891820.1\|3133216_3134185_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	3.1e-57	42.0
WP_009891822.1\|3134181_3134382_+	hypothetical protein	NA	NA	NA	NA
WP_011402467.1\|3134451_3135447_+	endonuclease	A6XMH8	Bacillus_virus	1.3e-55	39.5
WP_009891828.1\|3135458_3135674_+	hypothetical protein	NA	NA	NA	NA
WP_009891830.1\|3135742_3136657_+	hypothetical protein	NA	NA	NA	NA
WP_009891833.1\|3136653_3137739_+	hypothetical protein	NA	NA	NA	NA
WP_009891835.1\|3137794_3138604_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_009891839.1\|3138705_3139005_+	hypothetical protein	NA	NA	NA	NA
WP_009891843.1\|3139008_3139266_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009891847.1\|3139820_3140531_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011402469.1\|3140609_3140957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_009891850.1\|3141086_3141923_+	hypothetical protein	NA	NA	NA	NA
WP_009889500.1\|3141962_3143534_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
WP_011402470.1\|3143563_3143911_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.3e-41	72.9
WP_009888727.1\|3143907_3144315_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_011402471.1\|3144674_3145310_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_009891853.1\|3145442_3147425_-	DNA mismatch repair protein	NA	NA	NA	NA
WP_009891856.1\|3147580_3150736_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.1e-71	30.8
WP_011402472.1\|3150735_3151482_-	hypothetical protein	NA	NA	NA	NA
WP_025404080.1\|3151478_3152771_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_009891859.1\|3152760_3154317_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_085952878.1\|3155144_3156355_-\|transposase	IS3-like element ISButh2 family transposase	A0A1B0Z042	Pseudomonas_phage	7.0e-99	63.1
WP_102815742.1\|3156667_3158251_+	recombinase family protein	NA	NA	NA	NA
WP_009891862.1\|3158706_3159966_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4

DBSCAN-SWA_9

3367090 : 3418173

Pseudomonas_phage(33.33%)

plate,protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009888666.1\|3367090_3368389_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_009888664.1\|3368457_3369540_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	6.7e-08	46.6
WP_009888662.1\|3369565_3370423_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_009888661.1\|3370502_3370811_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_009888659.1\|3370824_3371421_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_009888656.1\|3371676_3372465_+	dioxygenase	NA	NA	NA	NA
WP_009888654.1\|3372621_3374223_-	APC family permease	NA	NA	NA	NA
WP_004196837.1\|3374657_3374861_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
WP_009888639.1\|3375038_3376301_-	Hsp70 family protein	NA	NA	NA	NA
WP_009888637.1\|3376517_3377123_-	nitroreductase family protein	NA	NA	NA	NA
WP_009888636.1\|3377434_3378718_-	MFS transporter	NA	NA	NA	NA
WP_009888634.1\|3378876_3379524_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_009888632.1\|3379844_3380450_+	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_009888631.1\|3380510_3381407_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009888630.1\|3381538_3382675_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_009888629.1\|3383364_3383871_-	hypothetical protein	NA	NA	NA	NA
WP_043288838.1\|3384473_3386624_+	peptidase M1	A0A0P0IY26	Acinetobacter_phage	1.3e-47	25.7
WP_154659998.1\|3387239_3387581_+	hypothetical protein	NA	NA	NA	NA
WP_009888623.1\|3387667_3387916_+	hypothetical protein	NA	NA	NA	NA
WP_009888621.1\|3388017_3388239_+	hypothetical protein	NA	NA	NA	NA
WP_009888619.1\|3388889_3390158_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_009888617.1\|3390172_3392428_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	5.8e-38	28.3
WP_009888616.1\|3392424_3393873_+	TolC family protein	NA	NA	NA	NA
WP_009910677.1\|3394069_3395035_-	hypothetical protein	NA	NA	NA	NA
WP_025369750.1\|3395160_3396012_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_011402549.1\|3396297_3400203_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_009888606.1\|3400199_3401189_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_009888604.1\|3401193_3402129_+	OmpA family protein	NA	NA	NA	NA
WP_009888602.1\|3402328_3403459_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_009910486.1\|3403544_3406208_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.8e-91	31.2
WP_009888601.1\|3406241_3407342_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009888599.1\|3407305_3409144_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009888597.1\|3409224_3409707_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_009906860.1\|3409764_3410268_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009888594.1\|3410340_3411831_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_009888592.1\|3411847_3412366_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_011402551.1\|3412402_3413092_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_025404121.1\|3413465_3414080_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_009888581.1\|3414188_3415535_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009888580.1\|3415531_3416317_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_158338514.1\|3416950_3417079_+\|transposase	transposase	NA	NA	NA	NA
WP_011402553.1\|3417660_3418173_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.1e-21	52.5

DBSCAN-SWA_10

3523543 : 3584979

Stx2-converting_phage(25.0%)

integrase,transposase

attL 3524244:3524303|attR 3583951:3584520

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009888727.1\|3523543_3523951_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	3.1e-14	38.2
WP_009892112.1\|3523947_3524274_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.5e-35	70.7
3524244:3524303	attL	NA	NA	NA	NA
WP_009888239.1\|3530735_3532022_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_009888238.1\|3532547_3533546_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_004553825.1\|3533599_3533884_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_009888236.1\|3533894_3534698_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_009888235.1\|3534729_3535350_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA
WP_009888234.1\|3535351_3536440_+	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_011402573.1\|3536561_3537392_+	DUF1835 domain-containing protein	NA	NA	NA	NA
WP_009888231.1\|3537420_3538020_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_009888228.1\|3538263_3538911_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009888227.1\|3539035_3539551_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_009888225.1\|3539702_3540800_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_011402574.1\|3540998_3541199_-	hypothetical protein	NA	NA	NA	NA
WP_009888221.1\|3541517_3545099_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA
WP_009906482.1\|3545623_3547894_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_009888218.1\|3548426_3549113_+	orotate phosphoribosyltransferase	S4VS55	Pandoravirus	7.2e-16	28.6
WP_009888213.1\|3549456_3550032_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_009888211.1\|3550241_3550817_+	flavodoxin family protein	NA	NA	NA	NA
WP_009888209.1\|3550968_3551913_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_009910051.1\|3552389_3553763_+	DUF2957 domain-containing protein	NA	NA	NA	NA
WP_009888204.1\|3553889_3555140_+	DUF2957 domain-containing protein	NA	NA	NA	NA
WP_009888202.1\|3555159_3555990_+	OmpW family protein	NA	NA	NA	NA
WP_025404127.1\|3556125_3557346_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	6.6e-238	98.8
WP_009910052.1\|3557488_3558427_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011402579.1\|3558521_3559790_+	MFS transporter	NA	NA	NA	NA
WP_009906493.1\|3559889_3560546_-	LysE family translocator	NA	NA	NA	NA
WP_011402580.1\|3560651_3561521_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_009906498.1\|3561647_3562403_+	Mut7-C ubiquitin/RNAse domain-containing protein	NA	NA	NA	NA
WP_009906499.1\|3562494_3562725_-	hypothetical protein	NA	NA	NA	NA
WP_009910060.1\|3563814_3564186_+	hypothetical protein	NA	NA	NA	NA
WP_127446413.1\|3564280_3564676_-	hypothetical protein	NA	NA	NA	NA
WP_011402584.1\|3565303_3565621_-	hypothetical protein	NA	NA	NA	NA
WP_009910062.1\|3566136_3567543_+	amino acid permease	NA	NA	NA	NA
WP_127446414.1\|3567788_3568148_-	hypothetical protein	NA	NA	NA	NA
WP_009891862.1\|3568216_3569476_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.5e-43	44.4
WP_158347310.1\|3569712_3570204_+\|integrase	tyrosine-type recombinase/integrase	A0A0A1I5U0	Burkholderia_phage	2.7e-25	39.7
WP_048901541.1\|3570278_3570578_-	hypothetical protein	NA	NA	NA	NA
WP_127446415.1\|3570861_3571593_-	hypothetical protein	NA	NA	NA	NA
WP_127446416.1\|3571804_3572290_-	hypothetical protein	NA	NA	NA	NA
WP_080511557.1\|3572401_3573211_-	DUF1311 domain-containing protein	A0A2I6UFG0	Klebsiella_phage	1.4e-05	44.3
WP_011402588.1\|3573270_3573513_+	helix-turn-helix transcriptional regulator	A0A1J0MCE6	Streptomyces_phage	9.9e-05	46.6
WP_025404133.1\|3573571_3574219_-	recombinase family protein	G8I4U3	Mycobacterium_phage	1.3e-19	36.1
WP_011402590.1\|3574613_3576560_+	ATP-binding protein	NA	NA	NA	NA
WP_127446417.1\|3576539_3576770_-	hypothetical protein	NA	NA	NA	NA
WP_045592532.1\|3577023_3579003_-	AAA family ATPase	A0A0F7L738	uncultured_marine_virus	2.0e-26	35.6
WP_102860126.1\|3579901_3581101_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.2e-43	42.7
WP_158347316.1\|3581601_3583380_-	hypothetical protein	NA	NA	NA	NA
WP_009889500.1\|3583407_3584979_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-150	53.8
3583951:3584520	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3727020 : 3733653

Ralstonia_phage(50.0%)

integrase,transposase

attL 3723223:3723273|attR 3733760:3733810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3723223:3723273	attL	NA	NA	NA	NA
WP_025404147.1\|3727020_3727929_+	hypothetical protein	E5F074	Ralstonia_phage	5.2e-30	36.6
WP_011402649.1\|3727925_3729308_+	hypothetical protein	NA	NA	NA	NA
WP_043300356.1\|3729384_3729966_+	hypothetical protein	A0A0K2QQ53	Ralstonia_phage	4.5e-11	58.0
WP_011402651.1\|3730424_3731204_+	hypothetical protein	A0A1W5LU59	Ralstonia_phage	2.4e-36	42.2
WP_099005207.1\|3731604_3732362_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_102860125.1\|3732411_3732954_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	1.9e-40	47.7
WP_009910242.1\|3732995_3733328_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	9.8e-19	51.9
WP_011402654.1\|3733335_3733653_+	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	8.2e-15	56.6
3733760:3733810	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_007651

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection