CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007492	Pseudomonas fluorescens Pf0-1, complete sequence	2 crisprs	csa3,DinG,cas3,DEDDh,WYL,PD-DExK	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007492_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007492_1

658180-658415

Orphan

Consensus_repeat	Method
CCACCTTCAGCCAGGGTTTGACCTTGTGGGGTTTTGTCATAACCATC	PILER-CR
TCTTGCACCAGACCTTTTTCTTCCAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_007492_1

>merge|NC_007492|1|658180-658415|PILER-CR,CRISPRCasFinder
CCACCTTCGGCCAGGGTTTGACCTTGTGGGGTTTTGTCGTAACCGTCAGCAGCGAGGGTCTGGCCTTGTGGGGTGCGGTCGCCACCGTCAGATGCCAGGGTTTGACCTTGTGGAGTGCGATCCGAACCGTCTTGCACCAGACCTTTTTCTTCCAGACGATCACGGCCGCCTTCAGCTACGGTTTGACCTTGTGGGGTTTTGTCATAGCCATCTTGAACCAGACCTTTTTCTTCCAG

>NC_007492|1|1|658180-658391|PILER-CR
CCACCTTCGGCCAGGGTTTGACCTTGTGGGGTTTTGTCGTAACCGTC	AGCAGCGAGGGTCTGGCCTTGTGGGGTGCGGTCGCCACCGTCAGAT
GCCAGGGTTTGACCTTGTGGAGTGCGATCCGAACCGTCTTGCACCAG	ACCTTTTTCTTCCAGACGATCACGGCCGCCTTCAGCTACGGTTTGACCTTGT
GGGGTTTTGTCATAGCCATC

>NC_007492|1|1|658309-658415|CRISPRCasFinder
TCTTGCACCAGACCTTTTTCTTCCAG	ACGATCACGGCCGCCTTCAGCTACGGTTTGACCTTGTGGGGTTTTGTCATAGCCA
TCTTGAACCAGACCTTTTTCTTCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007492.2\|WP_011332212.1\|654720_655293_-\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|368209
NC_007492.2\|WP_011332210.1\|652541_653447_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|226474
NC_007492.2\|WP_011332211.1\|653486_654620_-\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|225493
NC_007492.2\|WP_011332208.1\|650191_650908_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NC_007492.2\|WP_011332216.1\|658985_661061_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NC_007492.2\|WP_011332223.1\|665728_666523_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NC_007492.2\|WP_011332214.1\|656628_657129_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NC_007492.2\|WP_011332217.1\|661162_661693_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NC_007492.2\|WP_011332209.1\|651647_652412_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NC_007492.2\|WP_007950628.1\|657332_657965_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NC_007492.2\|WP_011332224.1\|666586_666892_+\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165
NC_007492.2\|WP_011332218.1\|661791_662694_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_007492.2\|WP_011332222.1\|664736_665630_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NC_007492.2\|WP_011332221.1\|663849_664740_+\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NC_007492.2\|WP_011332213.1\|655957_656632_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NC_007492.2\|WP_008001031.1\|655320_655935_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NC_007492.2\|WP_011332219.1\|662813_663452_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224103
NC_007492.2\|WP_011332225.1\|667240_668254_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_007492.2\|WP_007950657.1\|649322_650195_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|183080
NC_007492.2\|WP_011332220.1\|663452_663758_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987

Protein	Function_ID	Function_description	E-value
NC_007492.2\|WP_011332212.1\|654720_655293_-\|HupE/UreJ-family-protein	gnl\|CDD\|368209	pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.	9.58034e-45
NC_007492.2\|WP_011332210.1\|652541_653447_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|226474	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.14539e-80
NC_007492.2\|WP_011332211.1\|653486_654620_-\|AGE-family-epimerase/isomerase	gnl\|CDD\|225493	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism].	3.78622e-45
NC_007492.2\|WP_011332208.1\|650191_650908_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	6.31662e-133
NC_007492.2\|WP_011332216.1\|658985_661061_+\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	4.97769e-169
NC_007492.2\|WP_011332223.1\|665728_666523_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	6.72414e-31
NC_007492.2\|WP_011332214.1\|656628_657129_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.23264e-59
NC_007492.2\|WP_011332217.1\|661162_661693_-\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	6.07051e-40
NC_007492.2\|WP_011332209.1\|651647_652412_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.12715e-147
NC_007492.2\|WP_007950628.1\|657332_657965_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	7.51522e-42
NC_007492.2\|WP_011332224.1\|666586_666892_+\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	5.42786e-21
NC_007492.2\|WP_011332218.1\|661791_662694_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	9.71689e-70
NC_007492.2\|WP_011332222.1\|664736_665630_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.10417e-11
NC_007492.2\|WP_011332221.1\|663849_664740_+\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	4.02936e-38
NC_007492.2\|WP_011332213.1\|655957_656632_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	2.26908e-58
NC_007492.2\|WP_008001031.1\|655320_655935_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	9.46981e-128
NC_007492.2\|WP_011332219.1\|662813_663452_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	5.00883e-71
NC_007492.2\|WP_011332225.1\|667240_668254_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.33156e-11
NC_007492.2\|WP_007950657.1\|649322_650195_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	1.80207e-132
NC_007492.2\|WP_011332220.1\|663452_663758_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	8.83234e-28

>NC_007492.2|WP_007950628.1|657332_657965_-|TetR-family-transcriptional-regulator
MLPRAEQKQQTRNALMDAARHLMESGRGFGSLSLREVTKTAGIVPTGFYRHFADMDELGLVLVSEVGQTFRETIRLVRHNEFVMGGIIDASVRIFLDVVSANRSQFLFLAREQYGGSLPVRQAIGRLREDISSDLAADLALMPKLQHLNREGLSVMADLIVKSVFATLPDIIDPPAEALPEHLTPQAKITQQLRFIFIGLKHWQGLGSTE
>NC_007492.2|WP_011332214.1|656628_657129_-|urease-accessory-protein-UreE
MLVIHRRIDPQPVWAAELHLTFEARSKSRLRCFSAEGEDVGLFLERGQPPLYDGECLQAEDGRIVRVCARPEQLLHVTCANAFELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGAQVESIEAPFQPEHGAYGGGHHHSRHGDEDFNYAPKLHQFGVRL
>NC_007492.2|WP_011332213.1|655957_656632_-|urease-accessory-protein-UreF
MNPAWALLRLASPQLPIGGYSYSQGLEMAVDNGRVDSPDSARRWISDQLLLNLARFEAPLLLAHCQAAADEHWDELRKLCESHRASRETRELHLESRQMGYSLQQLLNGLPELDQPARDFLEHCAEPHLALCWALAARAWQISPQDALAAWLWSWLENQLAVLMKTLPLGQQAAQRLTSELLPLLQQAQQDATRINPEHLGSAAFGLSLACMAHERQYSRLFRS
>NC_007492.2|WP_008001031.1|655320_655935_-|urease-accessory-protein-UreG
MNTQPLRVGIGGPVGSGKTALTLALCLALRERYNLAVVTNDIYTREDADFLVRNEALAPERIIGVETGGCPHTAIREDASINLEAVDQLNRRFPGLDLILVESGGDNLSATFSPELSDLTIYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPLVGASLEMMNSDTQRMRNGKPFVFSNQKTGQGLEEIIAFIERQGLLTAA
>NC_007492.2|WP_011332212.1|654720_655293_-|HupE/UreJ-family-protein
MTLKRILGAVALLLTPALAFAHPGHGDSGLVAGISHPIGGLDHLLAMVAVGLWAAQQQGAARWALPCTFVGTMLIGGLLGFEGLELPALESGIAASVLALGLAVALAVRPPLVMAVAATALFALFHGVAHGLELPDMSSPWAYAAGFVVATAALHAAGYAVVRFLPQAAAPLVRLAGTASAVTGAWLLAG
>NC_007492.2|WP_011332211.1|653486_654620_-|AGE-family-epimerase/isomerase
MPHASRSTSLPELTALFGEVQQHFLDVIVPLWQGPGWNADMALPYEALDAAHQPLPPQRYRAMACARQLYLFSSLIGVVDNAEVRAAALFRSLQRHFHDAEHGGWFYSIDPQGKPLDKRKDLYTHAFILFACAHYWEKSREPLVESTLNAALEVIGRRFATGDGLYEACLDRDWITLETGPLQNPLMHLAEAFLATLAVREDAQVKQALSELCTAMHKRFVDPQAGVLMEKPLGAVDNWYEPGHQFEWYFLLESSPLLRGSKLHAALDRAFAFTEQYGVVQPSGAVRAMLDLNMGGRPKDSTQRIWAQAEYLRALTLRPDSEAAVLRQLQALQQRFLHAGGWHECRDEQGEVSRKDMPSTTPYHLATCYRGLADYLS
>NC_007492.2|WP_011332210.1|652541_653447_+|cation-diffusion-facilitator-family-transporter
MSNRGEQSLLKQSTILMFAVSIAGIATGFVSGSQSILFDGFFSLIATFIKVLMLITAKLIAKQSNQRFQFGFWHLEPMVLLIEGSFLLLIAIYAFLNGVFGIINGGREIELGLVIIYAAVFTVVEFAYFFYVRHRNRKFKSSLIQFDNISWLVDAMLSVGLLISFLAALLLKSQGYGEWAKFVDPLILIVLALTMLPPAFKILGPALRDVLGIAPDTLDDQVRQVMDAAKVEHGFDDYVSYVQKHGRARFIEIHVVLPANYRLQSVGQLDVLREEISAKLGKPDAARWLTISFTGDRKWIA
>NC_007492.2|WP_011332209.1|651647_652412_+|SDR-family-oxidoreductase
MSNTLFITGATSGFGEACARRFAEAGWKLVLTGRREERLNALCAELSKQTEVHGLVLDVRDRKAMEEAIANLPPSFAKLRGLINNAGLALGVDPAPKCDLDDWDTMVDTNVKGLMYSTRLLLPRLIAHGRGAGIINLGSIAGNYPYPGSHVYGATKAFVKQFSLNLRCDLQGTGVRVSNIEPGLCESEFSLVRFAGDQARYDATYAGAEPIQPQDIAETIFWVLNAPAHININSLELMPVSQTWAGFAIERNKA
>NC_007492.2|WP_011332208.1|650191_650908_+|ABC-transporter-ATP-binding-protein
MTQPILELKDLDVFYGPIQALKGVSLQINEGETVSLIGSNGAGKSTLLMSIFGQPRAAGGQILYQGVDITHKSSHYIASNGIAQSPEGRRVFPDMTVEENLLMGTIPIGDKYAKEDMQRMFELFPRLEERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFATLRELAKTGMTIFLVEQNANHALKLSDRAYVMVNGEIRLTGTGQELLVNEEVRNAYLGGH
>NC_007492.2|WP_007950657.1|649322_650195_+|ATP-binding-cassette-domain-containing-protein
MSEVVLSVEKLMMHFGGIKALSDVSLKVKRNSIFALIGPNGAGKTTVFNCLTGFYKASGGKIELNVRGQQTNVIQLLGESFKPTDFVSPKNFASRLYYKMFGGTHLVNRAGLARTFQNIRLFKEMSVLENLLVAQHMWVNRNMLAGILNTKGYRKAESDALDCAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMCTRPQIICLDEPAAGLNPQETEALSAMIRLLRDEHDLTVVLIEHDMGMVMSISDHIVVLDHGIVIAEGGPDAIRNDPKVIAAYLGADEEEVV
>NC_007492.2|WP_011332216.1|658985_661061_+|AsmA-family-protein
MTRTRKIFVWTFATLVLLLAVLVLIIVFFDWNRIKPPLNAKVSEELHRPFAINGNLSVVWRRELDEGGWRAWVPWPHVVAEDLTLGNPDWSKQPQMVTLKRVELRISPLALLAQRVAIPRIDLTEPNAQLQRLADGRANWTFKFDPKDPNAEPSNWVVDIGAIGFDKGHVTLDDQTLKTNLNLLIDPLGKPIPFSDIVGDKAAKTAQDKGGAPQDYAFGLKVTGQYHGQKLAGQGKIGGLLALQDASKPFPLQAQAKIGDTSVELAGTLTDPLNLGALDLRLKLAGASLGNLYPLTGVTLPDTPPYATDGHLIAKLHEPDGAQFRYEQFNGKIGSSDIHGDLAYVASQPRPKLSGALLSNQLLFADLAPLIGADSNAKQKARGGESKQPADKVLPVEEFKTERWRDMDADVEFTGKRIVHSEELPFTDLYTHLKLNDGELSLEPLRFGVAGGNLDAQIRLNGRTEPLEGRARLTARKFKLKQLFPTFEPMKTSFGELNGDADIAGRGNSVAKLLGGANGNLKMLINDGAISRELMELAGLNVGNYVVGKIFGDKEVKINCAAADFDIKTGLATTRLFVFDTENAIIYIDGTANMATEQLDLTVTPESKGWRLISLRSPLYVRGKFIKPDAGVKAVPLMLRGAGMVALGVIAAPAAGLLALVAPSGGEPNQCAPLLEQMKAGKAPATVKPTK
>NC_007492.2|WP_011332217.1|661162_661693_-|bacterioferritin
MSDLQLSDVQTLRERARQHVENGAVTESYSANREEVLRLLNESLATELVCVLRYKRHYFMANGLKANVAADEFLEHATQEAEHADRLAERIVQLGGEPEFNPDLLSKMSHAQYVAGNTLKEMVYEDLVAERIAIDSYREIIQYIGEKDPTTRRIFEDILAQEEEHADDMADILKDL
>NC_007492.2|WP_011332218.1|661791_662694_-|LysR-family-transcriptional-regulator
MFASLPLTALRAFESASRLLSFKAAAEELAVTPTAISHQIRSLEDWLGVALFERLPRQVRLTEGGERLFRSLHGAFLEVAQSVDTLRPQRSGSSLTLSTTAAFAALWLVPRLGRFYAKHPNINVRLDTHCEVIDLHQDASVDLVLRYSLDDYPNLYGLCLFDESFGVYGSPEQVALAARRTPALISVHWHNSKLYAHGWEAWCAQSGENWLNQHPAVREYDEEHYALQAAIAGQGLVLASNILVSQSVASGLLVPYKGEVQVDGAGYSALCVPGRERHPPVKAFFAWLREEAQLSGHVPR
>NC_007492.2|WP_011332219.1|662813_663452_+|NAD(P)H-dependent-oxidoreductase
MSKILAIHASPRGERSHSRRLAETFLSAWQVRHPQAQVTRREVGRALIPAVNEAFVAAAFYPEPEARPLTMQADLALSDQLVGELFDHDLLLISTPMYNFNVPSGLKAWVDQIVRLGLTFDHTLDNGIAQYTPLLHGKKALIVTSRGGFGFGPGGELEALNHADPWLRTALGFIGINDVTVVAAEGEESAERTFAVSVAEAEQRLLDLARAF
>NC_007492.2|WP_011332220.1|663452_663758_+|multidrug-efflux-SMR-transporter
MAWLFLLIAAGFEVTFAMGMKYAEGFTRLWPSLITVVAAVGGVYFLTLAMRELPVSIAYPIWTAIGSLGTVFLGFALLGESLTLVKLLSVGLIVAGVVGLK
>NC_007492.2|WP_011332221.1|663849_664740_+|triacylglycerol-lipase
MSQDSATRYPLVLVPGMLGFIRLVLYPYWYGIIKALRRGGATVIAVQVSPLNSTEVRGEQLLTRIDEILRETGAAKVNLFGHSQGSLTARYAAAKRPDLVASVTSVAGPNHGSELADYLAKYYPADSAKGRILEALLRSVGWLMALLETGYHGPKLPVDIHASHHSLTTEGVALFNQLYPQGLPQTWGGHGPEEVNGVRYYSWSGTLQPGKTDRGGNLFDGTNRSCRLFAKTFVREPGQCDGMVGRYSSHLGTVIGDDYPMDHFDIVNQSLGLVGKGADPVRLFVEHAARLKAAGV
>NC_007492.2|WP_011332222.1|664736_665630_-|DMT-family-transporter
MQYAFPLLAIFIWAGNTVINKLAVGAIFPAEIGFYRWLLAGLLFTPFMLKKVIAHWPQIRPNLGKIFILGVLGMAVYQSLAYFAATLTSATNMGIILSLMPLMSLAMAIISLGQQLTAGALVGAVLSFAGVLVVVSSGSLGALLQHGVNLGDAMMLIATLAYAIYSTLLKKWQLRLPPLVLLYLQVLVAVVVLFPLYAASPKTGLTLQNIPLVLYACLLASMLAPLAWMQAVQRLGPSRTTLFFNLLPLITALIAAVVLKEQLALYHLVGGLLTLGGVILSERWTTVLGRSRTPSAA
>NC_007492.2|WP_011332223.1|665728_666523_+|helix-turn-helix-transcriptional-regulator
MNSKHIDLLDFSELPSAVYFRYADFNAHEYAAPHRHPWGTLEYAAHGVLHMDVDGSRFMSPPQYAVWVPPQVEHSFYSHQPVNYRAVCLAPDVCSDLPAQACTLAISDILKAILKDFAARDVKIPAFEADQRLAQVLVDQLRQAPVHQCYLPYASSPGLLTILETLQAEPGNNEPLAHWAAQVHVSERTLARQFVRELGMSFGEWRQRLRYLVAIEALESSRSVQEIAFDLGYSSGSAFIAMFARQAGCTPEQYRRSHLEARKV
>NC_007492.2|WP_011332224.1|666586_666892_+|phosphate-starvation-inducible-protein-PsiF
MKMLRVPLLMIGLLLCSQGFAATAQQNKMTTCNADATAKSLKGDERKAFMSTCLKAAPAANDAKALTPQQQKMKTCNADAATKALTGDARKTFMSDCLKKK
>NC_007492.2|WP_011332225.1|667240_668254_+|AI-2E-family-transporter
MPTFSERHVVFWVSCIIIFGGLLLVLPLRLLPSLLAGLLVFELVNMLTPQLQRLIEGRRARWLAVALLGTLVVSVLTLIFAGAISFLLHEAENPGASLDKFMGVVDRARGQLPPFIDAYLPASAAEFRVAIGEWASKHLSELQLVGKDAAHMFVTLLIGMVLGAIIALQRVPDVTKRKPLAAALFDRLHLLVQAFRNIVFAQIKISLLNTFFTGIFLAVVLPLFGIKLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAIAALGYLIFIHKLEYFLNARIVGGQISAKSWELLLAMLVFEAAFGLPGVVAGPIYYAYLKSELKLGGMV

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Crispr_ID: NC_007492_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007492_2

2821146-2821246

Orphan

Consensus_repeat	Method
CCTTCAGTTACGCGCATGCCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_007492_2

>merge|NC_007492|2|2821146-2821246|CRISPRCasFinder
CCTTCAGTTACGCGCATGCCTGGCGTGCGGTCCGAACCATCAGCGGCAACGCGGAACCCTGGAGTGCGGTCACTGCCACCTTCAGTGACGCGCATGCCTGG

>NC_007492|2|2|2821146-2821246|CRISPRCasFinder
CCTTCAGTTACGCGCATGCCTGG	CGTGCGGTCCGAACCATCAGCGGCAACGCGGAACCCTGGAGTGCGGTCACTGCCA
CCTTCAGTGACGCGCATGCCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007492.2\|WP_041475246.1\|2818504_2818945_+\|hypothetical-protein	unknown	unknown	unknown
NC_007492.2\|WP_011333890.1\|2821522_2822287_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379263
NC_007492.2\|WP_041475248.1\|2822572_2823517_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_007492.2\|WP_011333884.1\|2815923_2818098_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
NC_007492.2\|WP_011333897.1\|2829815_2831024_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_007492.2\|WP_011333882.1\|2813676_2814651_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176153
NC_007492.2\|WP_011333881.1\|2812626_2813274_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NC_007492.2\|WP_011333896.1\|2828655_2829588_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NC_007492.2\|WP_011333892.1\|2823697_2824432_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NC_007492.2\|WP_011333895.1\|2828121_2828577_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_007492.2\|WP_011333893.1\|2824502_2825855_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|224921
NC_007492.2\|WP_011333899.1\|2832284_2833154_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_007492.2\|WP_111539345.1\|2810067_2810694_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|153231
NC_007492.2\|WP_011333888.1\|2820786_2821044_-\|Atu4866-domain-containing-protein	unknown	unknown	gnl\|CDD\|371572
NC_007492.2\|WP_011333898.1\|2831218_2832217_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
NC_007492.2\|WP_041475245.1\|2814759_2815737_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_007492.2\|WP_011333886.1\|2819066_2819486_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NC_007492.2\|WP_041475247.1\|2819787_2820705_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NC_007492.2\|WP_011333880.1\|2810825_2812280_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NC_007492.2\|WP_011333894.1\|2825872_2828122_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446

Protein	Function_ID	Function_description	E-value
NC_007492.2\|WP_011333890.1\|2821522_2822287_-\|SDR-family-oxidoreductase	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	5.21575e-72
NC_007492.2\|WP_011333886.1\|2819066_2819486_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.50279e-69
NC_007492.2\|WP_011333884.1\|2815923_2818098_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
NC_007492.2\|WP_011333897.1\|2829815_2831024_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.3665e-92
NC_007492.2\|WP_011333882.1\|2813676_2814651_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176153	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.74356e-57
NC_007492.2\|WP_011333881.1\|2812626_2813274_-\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	1.05796e-86
NC_007492.2\|WP_011333896.1\|2828655_2829588_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	7.54457e-59
NC_007492.2\|WP_011333892.1\|2823697_2824432_+\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	3.09572e-98
NC_007492.2\|WP_011333895.1\|2828121_2828577_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	6.6875e-66
NC_007492.2\|WP_011333893.1\|2824502_2825855_-\|cytochrome-c	gnl\|CDD\|224921	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion].	1.96939e-12
NC_007492.2\|WP_011333899.1\|2832284_2833154_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.20596e-31
NC_007492.2\|WP_111539345.1\|2810067_2810694_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|153231	cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	9.29597e-64
NC_007492.2\|WP_011333888.1\|2820786_2821044_-\|Atu4866-domain-containing-protein	gnl\|CDD\|371572	pfam11512, Atu4866, Agrobacterium tumefaciens protein Atu4866. Atu4866 is a protein with unknown function from Agrobacterium tumefaciens however the structure has been determined. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands. Atu4866 has a potential ligand-binding site where is has a stretch of conserved residues on the surface.	1.96e-36
NC_007492.2\|WP_011333898.1\|2831218_2832217_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	6.9019e-129
NC_007492.2\|WP_041475245.1\|2814759_2815737_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.37229e-46
NC_007492.2\|WP_041475248.1\|2822572_2823517_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.81905e-31
NC_007492.2\|WP_041475247.1\|2819787_2820705_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	7.34814e-59
NC_007492.2\|WP_011333880.1\|2810825_2812280_-\|PAS-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	5.5438e-44
NC_007492.2\|WP_011333894.1\|2825872_2828122_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	4.0187e-97

>NC_007492.2|WP_011333888.1|2820786_2821044_-|Atu4866-domain-containing-protein
MKDAKKTTQDHRYAGMWVTADGFIRHELLTTGRYDEARGKNKSAYQGRYELVGDYIQYWDDTGFTADGHFHDDVLYHAGMILHRQ
>NC_007492.2|WP_041475247.1|2819787_2820705_-|AraC-family-transcriptional-regulator
MEQSDAFILQNTAIYRDELVRLLTQRFTTPGIYETAIAPLHVIRFDAPSELIHTVHKPALCLIVQGQKEISLGDDHYLYDPLSYLVVSVTLPVAGRVLKASPEAPYLCIRFDFEATEIAQVIADAPPAGVPDEPELGLFLERVDVPLLETMLRLVRLLDTPKDIGMLAPLALRELYYRLLRGMHGRRLYELALGDSQTRRVTRAIDWLNNHYTQPLRIEELARVANLGNSTLHHRFKAVTAMSPLQYQKQLRLQEARRLLLGEGLDVASACYRAGYESPSQFSREYSRQFGCPPSKDASRTRRTG
>NC_007492.2|WP_011333886.1|2819066_2819486_-|organic-hydroperoxide-resistance-protein
MINQLDTVLYTGKTRTTGGRDGASRSSDGNLDIKLSPPGSNGSGTNPEQLLAAGWSACFIGAMGKAAAAQKIRLPADVAVETEIDLGKTGDAFFLQARLSVSLPGLEPSVAQALVDAAHQTCPYSKATRGNIDVTLRLI
>NC_007492.2|WP_041475246.1|2818504_2818945_+|hypothetical-protein
MAISRVTETTDKTALVKAEVYRWYNLFFPWSRGVASQSEDAIKPLYDALANDFRVVLTDGQIMDRENYWERLWGLHGKRAGSPESHIINLSITPLPGDFFLTVFDLVKNGITKKKVDSALMRLDPDSPSGISWIYVHESEHETSFA
>NC_007492.2|WP_011333884.1|2815923_2818098_-|TonB-dependent-siderophore-receptor
MSRPTSPHRFNPSRNLLSMAICMAVMTPALADETREVQDTAPPATLELGATAITSTQLGSTTEGSESYTTGTMATATKLPLTLRETPQAVTVITRQRMDDQAMTSINDVVNATPGLFLDYSNGPGRQAYKARGFNIDNLMYDGIPSGYDGVNVGSQPNLAMFDRVEVVRGATGLVTGAGNPSAAINLVRKRPLAEQRVTLTGAAGTWDNYRGELDASSPLNDSGTLRGRVVTSYHDANSFIDDVDEQHNLFYAVTEADLSDDTTLTLGFSHQKDRTNYFWGSSMIGLDGHHLDLPRSYNPGTSWEDKDQEINTVFAEIRQQLANDWKLQVNANYSEQNALFSGSYQSRWVNDTLARTVYQSKADENQAGLDAFFSGPFEAFGRSHELVVGASKRIYDLTTHNYSPYDTNWPINAGKPDFVHTNNTREVTTQDGVYLTTRLSLADPLKLILGGRLDWYDYDNRDGDGDYKVTRNVTRYAGLIYELDDHHSVYASYSDIFTPQSNKGTSGNPVKPIVGKNYEVGIKGEYLGGALNASLAVFRVDQENRAVQVFVPNCPQSSCYEASGEIRSQGIDFELQGALTDNWQIGGGYTYARTHTIKDEANPQNVNKQFDTDTPEHLFKLTTRYNFQGPLEKLRVGGNISWQSRMYNDIELLDGGNYRLKQGAYAVTDLMAGYRVNENLNLQLNANNIFDRKYYSTIANSVSYGGDSYGSPRNMMLTAKYTF
>NC_007492.2|WP_041475245.1|2814759_2815737_-|alpha/beta-hydrolase
MTDEKNGTTRRGLITTGAMAATLAVALPALATQQTPASASGGSKSAGKGSDSGMFTVKDGTQIFYKDWGHGQPIVFHHGWPLSSDDWDTQMLFFLNKGFRVIAHDRRGHGRSSQTAMGNAMDTYAADIAELMAHLNIRNAVHIGHSTGGGEVARYVARHGRGRVAKAVLIGAVAPIMLRTAKNPGGLPMEVFDGLRKALAQNRSQFYRDFPSGPFYGFNRPGAKVSEAIVENWWRQGMNGGIKAQYDCISAFSETDFTDDLKNIDVPTLVLHGEDDQIVPITNSAHLSIKLLKHGTLKTYPGQPHGMCTTNGDTINADLLAFINA
>NC_007492.2|WP_011333882.1|2813676_2814651_+|LysR-family-transcriptional-regulator
MNRNELRRVDINLLVVFETLMHERNVSRVGEKLFLGQPTISAALGRLRVLFDDPLFVRAGRVMEPTRRAEEIFANLTPALDGVVAALSRCQPFAPATSEVTFQVGLSDDVEYALLPRLLRQLRSEAPNIALVVLRVDQQQMSQRLFNGEISLGISPTLDLPANARRKSLRSIRPMLLRSDTRPGLLALDEFCERPHAIVSSMGKARDDTDHALDLLGRRRKVVLAVPQFSALPRLLAQSDMLVIVPDYVARAMASVNGIRAEPAPLLLPSRELSMVWRAAAHNDCAQRWLRSRCQAFLGTPIELQVVPKLRPALPVDQTLMMAR
>NC_007492.2|WP_011333881.1|2812626_2813274_-|response-regulator-transcription-factor
MNNNPISNNPSEPVVFIVDDDAALRESLGSLLRSIGLRVELFGSVAEFMTYQRPDTLSCLVLDVRLQGSSGLDFQNELATAGINVPIVFITGHGDIAMTVRAMKAGAVDFLTKPFREQDLIDAVCAAHSRDKQRRESGRHADELRARHGTLTPREQTVMALAASGLMNKQIAGEIGLSEITVKIHRGQAMRKMGARSFADLVRMAEVIAALPAHR
>NC_007492.2|WP_011333880.1|2810825_2812280_-|PAS-domain-containing-protein
MSIIKRRAQLLCSDAFAWLCAIAVGSMIYITNAYLDLDVAPTLFYITLVFMSANIFPVPVFLAVALGCLTLLTADFLVDEGYRDHRSIAGFVRCLIALTTISLLALRSKRATETLRRKEAFFLGAQKLTHTGSIGFIIDKKVSVSWSQESSRIFEYSPDVTPTLALVKSRTHPDDLPVIDQVLEQFARRQELVEVEHRLLMPDGRIKHVQMIASPLPRHRGRTQYAGALMDVTASKQSEEALFHSQATLAHVTRLTSMGELAASIAHEINQPLAAVITSGESCKRWINRPEPNLEEARRSLDRIIQNSVRVSDVIACIRALSRHSEVQRNVEVFDDIVSDSLTLMQHDISFHEVRPHARLGTHGARIKGDRVQLQQVIINLIINACQAMANVLDRARTLRITTSILHNEAVLEIADSGVGIAEDILPSLFDPFFTTKPTGLGMGLSICRSIIEFHGGRIWVNSTEGVGTQFVFAIPLAALEHDQ
>NC_007492.2|WP_111539345.1|2810067_2810694_-|AraC-family-transcriptional-regulator
MGLLDLTGAQTVFWAATCGLAQLGLPGYALHTASLQGGPVQTGEGLVVQTRRLDELGDEPINTLIVPGSAFISQALRDNAPLVDWLRVTSATANRTTSVCSGAFFLAQAGLLDGLRVATHWLMADMFERLFPRVELDREAIFVHQASVWTCAGVSAGIDLALALVEADHGRELAMQVARRMVVYYRRPDNQKQWSPLLQSQHSIAHER
>NC_007492.2|WP_011333890.1|2821522_2822287_-|SDR-family-oxidoreductase
MTDFKNSTPNEVAGKVALVTGAASGIGKAIALLLHARGAQVIAEDINPEVEALARPGLVPLVADITQDGAAERAVALAVEQFGRLDILVNNAGIIINKLVIDMTREDWERIQAVNATAAFLHSREAVKAMMPNKSGSIVNIASYASYFAFPTIAAYTASKGALAQLTRTLALEVIGHGIRVNAVGVGDVVTNILNNVVDDGPAFLAQHGEAAPIGRAAQPEEIAEVVAFIASDRASFMVGSVVMADGGMTVTAG
>NC_007492.2|WP_041475248.1|2822572_2823517_+|helix-turn-helix-transcriptional-regulator
MAHTGRTSQEPMSTSSRDLRITGESMGEFLPGEPQALPSRPEITDVVIQLFTHRSVTEPILVPAVVEPLLVLVLAGAATVEERALGGEWEAAQVSAGDFFLTSSDEPYEMRWQTHGGDTFEVMHLYLGLPLIEQASRELSGQHAGSVRLRDVSGARDERVAFVMEQLRTELLLERSPSALFARSLAQALAVHLVRSYLAESQPGRRVNALQAFKLRKVTDAMRAHLSAEFSLAKLASLAELSEYHFSRLFKRATGLSPSQYFIRLRMARARHLLLETRLGVIDIGLEVGYSSPSHFSQVFRREVGVTPSEFRGA
>NC_007492.2|WP_011333892.1|2823697_2824432_+|SDR-family-oxidoreductase
MSNIQNKVVLITGASSGIGEAAARLIAAKGAHVVLGARRTERLDKLVSEIQAEGGSASACALDVTDLQSMHAFVAFAKTQHGKVDVIINNAGVMPLSPLASLKVDEWNQMLDVNVRGVLHGIAAVLPDMQAQGFGQVINISSIGGLAVSPTAAVYCATKFAVRAISDGLRQETDKIRVTVVCPGVVESELADTISDEVAREEMKAFRRVALNADAIARALTYAIEQPDDVDVSEIVVRPTASPH
>NC_007492.2|WP_011333893.1|2824502_2825855_-|cytochrome-c
MNNSRFARTAGWLAVPCLVAAGLLAWYVTREPVSRLENHQIAVADIDPALVARGEYVARLSDCVACHSVPGGAPFAGGLEMATPLGSIHATNITPDTETGIGHYSLADFDRAVRHGVAPDSRRLYPAMPYPSYAKLSDDDVRALYAFFMKGVAPVKQANIPSAIPFPLNLRWPIALWNGLFVDAEPYVAKPSQDEQWNRGAYLVQGAGHCGSCHTPRSLAFNEKALDESGKPYLAGALLDGWYAPSLRDDHNTGLGRWSEQEIVQFLKTGRNQHAVVYGSMTEAFNNSTQFMSDDDLTAIAHYLKSLPGDRERDGAPWQYQAVSAAQRLESPGAQTYVTRCASCHGLDGKGQSQWMPPLAGATSALARESASAINITLNGSQRVVAAGVPDAYRMPAFREQLSDQQIAEVLTFMRSTWGNQGSAVDAQTVGKLREHTDPASSSPIILQMR
>NC_007492.2|WP_011333894.1|2825872_2828122_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MNVRIDPSQHASVLDLQEPINVSRRRFLTGTAVGALVLGFGLPLGATRVQAAAAATAERGTQVPAFLEIRPDNRVRLLCPFMEGGQGTFTAMAQIVGEELDADPATFLVEAAPPGEAYVVMENGLRITGGSMSVRMSYPVMRRLGALARAMLLQAGAQQLGVPVSELSTEPGKVVHAKSGRSLAYGELAERAMDLPVPDPASVKLRDPSQFRWIGKPVKRLDAYDKSTGKALYSIDLKVDDMLHAAVQHAPRLGMTVGNLRNEEQVKAMKGVHSVHRLPGAVAVVAERWWHAKRAVEAIQVDWQEPTADSKVRPMPADFSSDAWFKRLAEDKSPAKDDEHEGDVASILKETKTRIDATYHNQYLNHGQLEPPSALARFNPDGSLEVWLPNQAPDMFRADIAKRTGLDPSRITLHSPLLGGFFGRHFLYDSASPYPQAIALAKAVGRPVKLIWSREEEFLRDVLRPVAAVNFRAALDSDGWPLAIEAISATEGPTEALAGKQGEKLDPTALEGLSGKSYAIPNKRIAQIYVKGPAMLGYWRSVGNSLNDFFYESFLDELADKGGKDPFELRLHLLRDNKRLTTLLQAVGELSGGWKRGPFTAEDGSRRARGVAMASPFGTETAVIAEVSIENGQVKVHDIWQAIDPGSIVNPAIVEAQVNGAVALGLSQTLVEEAVWVDGKPRARNYDLYPILPPARMARVHVRVVESGEKMGGIGEPPLPAVAPAVANAVATLTGQRVRSLPLSRHTFT
>NC_007492.2|WP_011333895.1|2828121_2828577_-|(2Fe-2S)-binding-protein
MELRINQKTYQVDADADTPLLWVIRDDLGMTGTKYGCGLAQCGACSVLVDGNVVRSCVTPVAGVVGREVTTIEAIEADEVGKRVVSTWVDLQVAQCGYCQSGQVMAATALLKQNPKPSDAQIEAAMVNLCRCGTYNAIHAAVHELAGKGDA
>NC_007492.2|WP_011333896.1|2828655_2829588_-|AraC-family-transcriptional-regulator
MIPTPLPQESPLAVHIDPRVNAPGDFATSIPGLSLFRRDQPAPPVVCMIEPSLILVGRGEKRLWVGGEGYSYDPSRFLVTSLDLPANSEVMLASPEQPCVGLVLKLDVSMLAEVITKSGLPAKRQPSTGTGAAIGSLSSALEDALDRLLALLDEPEAIPVLAPLILREIHYRLLHTDQGPRLRQITAVDGQGYRIAKAIDWLKVNYTDALRIDDLAARVQMSAPTFHHHFRQLTGMSPLQYQKWLRLNEARRLMLVERLDVSRAAFAVGYESPSQFSREYGRLFGTAPSRDMALLRGQPFEAAALGTVAN
>NC_007492.2|WP_011333897.1|2829815_2831024_+|MFS-transporter
MTFPSTDPSKRTGGWSAVLAMSLAAFALVASEFMPVSLLTPIAADLHITEGQAGQGISVSGAFALITSLLIASVAARVERKKLLLCLTLLMIVSGTVVALAPGYPSFMFGRALIGIAIGGFWSLSAATAMRLVKPEQVSRALAIVNGGNALATVIAAPAGSFLGSLIGWRGAFFCVVPVAALAAVWLLISLPSFKAERQAGSGNVLRLMRQLPVALGMVAVSVFFMGQFMLFTYLRPFLEGVTGVSVSTLSLMLLGLGLAGFIGTFLIERFMGRGLYRTLTAIPLIMAVIALALVSFGKSPVLTAVLLGLWGLVATAAPVGWWTWLAQTLPDDAEAGGGLLVAIVQLAIAGGAIVGGLAFDLSGYKATFELSAAVLVAASVLAWLAGRNATEVHLVEPNATA
>NC_007492.2|WP_011333898.1|2831218_2832217_-|NADP-dependent-oxidoreductase
MKAFLIDGYGKNPGRIGEAPAPAVGAHDVLIEVHASSVNVLDSKISKGEFKLILPYAFPLILGNDLAGVVVEVGPQVTRFKPGDEVYARPPEARIGTFAQLIAVNENAVALKPANTDMAQAASLPLVALTAWQVLVETARLQKGQKVLIHAGSGGVGTVAIQLAKHLGAFVATTTSTANVEWVKALGADLVIDYTQQDFASVLHDYDVVLNSLGADVLEKSLKVLKPGGQLISISGPPTVQFAREHGLSWPLQQVMRLLSLGIRRKARKQDVSYAFVFMRANGAQLQHITALVEDGIIKPVVDRSFLFESTAEALKYVERGRAKGKVVVALK
>NC_007492.2|WP_011333899.1|2832284_2833154_-|alpha/beta-hydrolase
MSSMQTNSRSGSPTSFIDAANQSITVNGIPFAYRDTGPTTGVPLVLFNHWGAVLDNFDPAIIDGLAQTRRVITTDYRGIGNSGGTAPLTVGEMADDAIQLIRALGLKTVDVLGFSLGGFVAQDIALKAPDLVRRLILTGTGPAGGTGIDKVGRVSWPLILKGLLTLRDPKFYLFFTSSANGRRSASQYLRRLKARKNNRDKGPTPRAFLRQLKAITAWGRQPRQALGRLRTPTLVVNGDNDIMVPSVNSFELARLIPDAQLVIYEDAGHGGIFQHHADFVAKAQAFLDA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262320 : 1370140

109

Pseudomonas_phage(42.59%)

tail,plate,protease,tRNA,lysis

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039762445.1\|1262320_1263139_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	3.0e-08	33.9
WP_011332673.1\|1263163_1263568_-	SufE family protein	NA	NA	NA	NA
WP_041475152.1\|1263564_1264770_-	cysteine desulfurase	A0A2K9L2Y3	Tupanvirus	2.4e-59	31.7
WP_011332675.1\|1264895_1265930_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_003222107.1\|1265961_1266324_-	ArsC family reductase	NA	NA	NA	NA
WP_011332677.1\|1266505_1268137_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_011332678.1\|1268161_1268833_-	hypothetical protein	NA	NA	NA	NA
WP_011332679.1\|1269015_1269750_-	hypothetical protein	NA	NA	NA	NA
WP_011332680.1\|1269915_1271115_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_007954768.1\|1271158_1273861_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_011332681.1\|1273901_1274684_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_008052780.1\|1275058_1275796_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_011332682.1\|1275986_1276850_+	elongation factor Ts	NA	NA	NA	NA
WP_011332683.1\|1277061_1277805_+	UMP kinase	NA	NA	NA	NA
WP_011332684.1\|1277801_1278359_+	ribosome recycling factor	NA	NA	NA	NA
WP_011332685.1\|1278373_1279129_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.1e-17	38.1
WP_011332686.1\|1279128_1279935_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_011332687.1\|1279931_1281122_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_011332688.1\|1281175_1282528_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_011332689.1\|1282602_1284993_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_003222140.1\|1285038_1285542_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_011332690.1\|1285545_1286601_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_003222142.1\|1286707_1287148_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_007954792.1\|1287144_1287921_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_011332691.1\|1287923_1289054_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_041475153.1\|1289065_1289692_+	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	2.0e-28	40.5
WP_011332693.1\|1289768_1293290_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	7.1e-200	37.0
WP_011332694.1\|1293429_1294377_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_011332695.1\|1294523_1295852_+\|tRNA	tRNA lysidine(34) synthetase TilS	A7IXR9	Paramecium_bursaria_Chlorella_virus	2.2e-05	24.8
WP_011332696.1\|1296126_1297758_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.4e-158	53.5
WP_007954807.1\|1297763_1298609_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.1e-49	42.4
WP_011332697.1\|1298765_1300055_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	6.9e-137	59.2
WP_003222158.1\|1300226_1300505_+	cell division protein FtsB	NA	NA	NA	NA
WP_011332698.1\|1300501_1301209_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011332699.1\|1301205_1302102_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011332700.1\|1302218_1303331_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	4.7e-33	29.1
WP_011332701.1\|1303386_1304232_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_007954821.1\|1304275_1304749_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011332702.1\|1304745_1305804_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_011332703.1\|1305791_1306541_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.2e-68	53.0
WP_181457888.1\|1306582_1307218_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-41	49.8
WP_011332705.1\|1307430_1308312_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.6e-06	33.3
WP_007954831.1\|1308418_1309426_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_007908827.1\|1309915_1310239_-	ferredoxin family protein	NA	NA	NA	NA
WP_011332706.1\|1310402_1312985_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	6.2e-28	22.2
WP_041475154.1\|1313195_1313930_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.7e-132	95.5
WP_011332708.1\|1314457_1314898_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_011332709.1\|1315023_1315362_+	pyocin	B5TK61	Pseudomonas_phage	9.8e-51	87.5
WP_011332710.1\|1315432_1315954_+	hypothetical protein	NA	NA	NA	NA
WP_011332711.1\|1315957_1316566_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.9e-36	55.6
WP_007954853.1\|1316580_1316913_+	hypothetical protein	A0A2H4JI46	uncultured_Caudovirales_phage	5.5e-38	70.9
WP_011332712.1\|1316909_1317905_+\|plate	baseplate J/gp47 family protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.9e-110	62.9
WP_011332713.1\|1317901_1318537_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	5.2e-45	52.5
WP_011332714.1\|1318537_1320991_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	2.5e-87	37.9
WP_011332715.1\|1321000_1321531_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_039771239.1\|1321644_1321830_+	hypothetical protein	NA	NA	NA	NA
WP_011332716.1\|1321832_1322999_+\|tail	tail protein	B0ZSG8	Halomonas_phage	3.2e-125	57.0
WP_011332717.1\|1322998_1323505_+\|tail	phage major tail tube protein	Q6R4W3	Vibrio_virus	4.8e-25	36.9
WP_011332718.1\|1323585_1324167_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	3.2e-25	35.9
WP_011332719.1\|1324295_1326776_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_011332720.1\|1326772_1327156_+\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	2.8e-33	52.8
WP_011332721.1\|1327148_1327361_+\|tail	tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	2.8e-19	65.7
WP_011332722.1\|1327370_1328399_+	hypothetical protein	B0ZSH3	Halomonas_phage	5.2e-95	51.6
WP_011332723.1\|1328460_1329045_+	hypothetical protein	B5TK65	Pseudomonas_phage	9.3e-81	76.8
WP_007954893.1\|1329041_1329221_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	5.2e-19	80.0
WP_011332724.1\|1329220_1330717_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	9.8e-260	91.8
WP_007908779.1\|1330784_1331132_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	3.8e-58	93.9
WP_003222226.1\|1331128_1331425_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	2.8e-41	90.8
WP_011332725.1\|1331555_1333328_+	hypothetical protein	B5TK70	Pseudomonas_phage	1.0e-69	60.1
WP_011332726.1\|1333314_1334550_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	4.6e-170	71.8
WP_011332727.1\|1334553_1335597_+	hypothetical protein	B5TK72	Pseudomonas_phage	3.7e-157	79.4
WP_011332728.1\|1335624_1336134_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	6.4e-78	86.4
WP_007954906.1\|1336133_1336532_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	1.2e-68	94.7
WP_011332729.1\|1336521_1337565_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	2.7e-155	80.3
WP_011332730.1\|1337552_1338152_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.6e-104	90.5
WP_011332731.1\|1338163_1339315_+	hypothetical protein	B5TK77	Pseudomonas_phage	8.6e-163	73.0
WP_011332732.1\|1339311_1339827_+	hypothetical protein	B5TK78	Pseudomonas_phage	9.1e-48	62.4
WP_011332733.1\|1339954_1341049_+	hypothetical protein	B5TK79	Pseudomonas_phage	1.7e-160	75.3
WP_011332734.1\|1341056_1341623_+\|tail	tail fiber assembly protein	B5TK80	Pseudomonas_phage	3.4e-72	65.8
WP_011332735.1\|1341637_1342558_+	hypothetical protein	B5TK81	Pseudomonas_phage	2.1e-39	41.1
WP_011332736.1\|1342560_1343001_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	1.1e-20	50.0
WP_011332737.1\|1343030_1344233_+	carbohydrate binding domain-containing protein	B5TK77	Pseudomonas_phage	2.2e-20	69.6
WP_011332738.1\|1344244_1344487_+	hypothetical protein	NA	NA	NA	NA
WP_011332739.1\|1344543_1345107_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	2.7e-85	80.6
WP_041475155.1\|1345088_1345619_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	1.3e-57	72.9
WP_041475156.1\|1345687_1346188_+	CinA family protein	B5TK85	Pseudomonas_phage	2.5e-74	87.3
WP_003222269.1\|1346271_1347330_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.5e-110	58.9
WP_011332742.1\|1347338_1347809_+	recombination regulator RecX	NA	NA	NA	NA
WP_011332743.1\|1347875_1348994_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_011332745.1\|1349347_1349542_+	hypothetical protein	NA	NA	NA	NA
WP_011332746.1\|1349542_1349968_-	hypothetical protein	NA	NA	NA	NA
WP_011332747.1\|1350157_1350901_+	DTW domain-containing protein	NA	NA	NA	NA
WP_181457886.1\|1350959_1351133_-	hypothetical protein	NA	NA	NA	NA
WP_007954938.1\|1351125_1351776_+	response regulator transcription factor	NA	NA	NA	NA
WP_003222276.1\|1351851_1352214_+	diacylglycerol kinase	NA	NA	NA	NA
WP_011332748.1\|1352210_1353137_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003222277.1\|1353281_1354061_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_181457885.1\|1354130_1354829_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_011332750.1\|1354888_1355659_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_007954948.1\|1355786_1356254_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	7.7e-38	52.0
WP_011332751.1\|1356327_1357038_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_041475157.1\|1357121_1357595_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011332753.1\|1357706_1359044_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_011332754.1\|1359331_1361233_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	5.3e-77	34.1
WP_011332755.1\|1361491_1362787_-	virulence factor family protein	NA	NA	NA	NA
WP_011332756.1\|1362786_1365426_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_011332757.1\|1366343_1367405_+	DNA polymerase IV	NA	NA	NA	NA
WP_011332758.1\|1367453_1368407_-	hypothetical protein	NA	NA	NA	NA
WP_011332759.1\|1368424_1370140_-\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	6.9e-07	25.4

DBSCAN-SWA_2

4042885 : 4049074

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041475586.1\|4042885_4043278_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	7.9e-52	77.5
WP_011334936.1\|4043279_4043636_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.9e-37	65.8
WP_011334937.1\|4043635_4043929_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.4e-31	68.7
WP_011334938.1\|4043925_4044261_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.2e-45	82.0
WP_011334939.1\|4044257_4045259_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.6e-163	85.4
WP_011334940.1\|4045351_4046353_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_011334941.1\|4046398_4047793_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_011334942.1\|4047793_4049074_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	53.9

DBSCAN-SWA_3

4114877 : 4185655

Escherichia_phage(20.0%)

tRNA,coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011334984.1\|4114877_4116578_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	1.6e-205	62.7
WP_011334985.1\|4116828_4117335_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_011334986.1\|4117331_4118078_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_011334987.1\|4118300_4119830_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_011334988.1\|4119922_4121125_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011334989.1\|4121140_4122610_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_011334990.1\|4122599_4123082_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011334991.1\|4123329_4127004_-	translocation/assembly module TamB	NA	NA	NA	NA
WP_011334992.1\|4127000_4128728_-	outer membrane protein assembly factor	NA	NA	NA	NA
WP_011334993.1\|4128794_4129445_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011334994.1\|4129619_4130432_+	exodeoxyribonuclease III	A0A0N9QXX6	Chrysochromulina_ericina_virus	5.2e-13	25.5
WP_011334995.1\|4130547_4131882_+	phosphate ABC transporter substrate-binding/OmpA family protein	NA	NA	NA	NA
WP_011334996.1\|4132062_4133292_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_011334997.1\|4133481_4134426_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011334998.1\|4134481_4134883_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011334999.1\|4134937_4135837_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	1.5e-42	39.0
WP_011335000.1\|4136430_4138128_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.3e-29	29.1
WP_011335001.1\|4138329_4139493_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_011335002.1\|4139505_4141113_+	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	2.8e-18	55.4
WP_011335003.1\|4141126_4141942_+	gamma-carboxygeranoyl-CoA hydratase	NA	NA	NA	NA
WP_011335004.1\|4141941_4143891_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_041475588.1\|4143930_4144587_-	helix-turn-helix domain-containing protein	A0A286S2B2	Klebsiella_phage	2.3e-35	39.6
WP_011335006.1\|4144716_4145055_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_181457896.1\|4145263_4145437_-	hypothetical protein	NA	NA	NA	NA
WP_011335007.1\|4145534_4146686_+	carboxypeptidase family protein	NA	NA	NA	NA
WP_011335008.1\|4146833_4148042_+	MFS transporter	NA	NA	NA	NA
WP_011335009.1\|4148049_4148595_-	cytochrome b	NA	NA	NA	NA
WP_011335010.1\|4148591_4149686_-	catalase family peroxidase	NA	NA	NA	NA
WP_011335011.1\|4149843_4150350_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_011335012.1\|4150346_4151099_+	anti-sigma factor	NA	NA	NA	NA
WP_011335013.1\|4151104_4152076_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_041475352.1\|4152072_4154430_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_011335015.1\|4154511_4155294_-	molecular chaperone	NA	NA	NA	NA
WP_011335016.1\|4155318_4155819_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_007951533.1\|4155823_4156360_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011335017.1\|4156380_4156914_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011335018.1\|4157014_4157524_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_011335019.1\|4157810_4158944_+	cell division protein ZapE	NA	NA	NA	NA
WP_011335020.1\|4159006_4160320_+	protein kinase	NA	NA	NA	NA
WP_011335021.1\|4160359_4161064_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011335022.1\|4161284_4162691_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_181457898.1\|4162694_4164092_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011335024.1\|4164158_4165484_-	MFS transporter	NA	NA	NA	NA
WP_007951543.1\|4165773_4166673_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011335025.1\|4166642_4167503_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011335026.1\|4167616_4168726_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_011335027.1\|4168783_4169611_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_011335028.1\|4169807_4170362_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.6e-16	39.6
WP_041475353.1\|4170358_4171267_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_011335030.1\|4171308_4173348_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_011335031.1\|4173553_4174684_+	carbon-nitrogen hydrolase	NA	NA	NA	NA
WP_041475354.1\|4174687_4175728_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_146615297.1\|4175732_4175921_-	hypothetical protein	NA	NA	NA	NA
WP_011335033.1\|4176048_4176906_-	DUF2242 domain-containing protein	NA	NA	NA	NA
WP_011335034.1\|4176999_4177899_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041475355.1\|4178021_4179227_+	MFS transporter	NA	NA	NA	NA
WP_011335036.1\|4179287_4181159_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_002552737.1\|4181390_4181663_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.4e-18	58.4
WP_007951557.1\|4181811_4184208_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.0e-221	52.0
WP_007951558.1\|4184371_4185655_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-138	59.7

DBSCAN-SWA_4

5845891 : 5903670

Tupanvirus(16.67%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011336265.1\|5845891_5846395_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_041475446.1\|5846570_5847458_+	acyltransferase	NA	NA	NA	NA
WP_011336267.1\|5847459_5848017_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_181457853.1\|5848369_5848939_+	anti-sigma factor	NA	NA	NA	NA
WP_080511028.1\|5849064_5849376_+	hypothetical protein	NA	NA	NA	NA
WP_011336270.1\|5849476_5850676_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.5e-11	28.9
WP_007959808.1\|5850775_5851633_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_011336271.1\|5851646_5852279_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_011336272.1\|5852334_5855352_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_011336273.1\|5855348_5855678_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_003206307.1\|5855692_5856943_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_011336274.1\|5856963_5858217_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.7e-100	53.0
WP_011336275.1\|5858373_5859084_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_011336276.1\|5859211_5860252_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_011336277.1\|5860374_5861199_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_011336278.1\|5861289_5861775_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_011336279.1\|5861771_5863220_+	hypothetical protein	A0A2H4JEI9	uncultured_Caudovirales_phage	1.1e-82	48.9
WP_011336280.1\|5863216_5863603_+	hypothetical protein	NA	NA	NA	NA
WP_011336281.1\|5863670_5864771_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_011336282.1\|5865052_5866345_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_011336283.1\|5866395_5867640_-	metallophosphoesterase	NA	NA	NA	NA
WP_011336284.1\|5867665_5869534_-	hypothetical protein	NA	NA	NA	NA
WP_011336285.1\|5869682_5873135_-	GMC family oxidoreductase N-terminal domain-containing protein	NA	NA	NA	NA
WP_011336286.1\|5874129_5874900_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_011336287.1\|5874909_5876130_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_011336288.1\|5876129_5878079_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_011336289.1\|5878234_5880295_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_011336290.1\|5880310_5880841_-	hypothetical protein	NA	NA	NA	NA
WP_007959776.1\|5880917_5881895_-	dipeptidase	NA	NA	NA	NA
WP_011336291.1\|5882129_5882531_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_011336292.1\|5882578_5882995_+	DUF3010 family protein	NA	NA	NA	NA
WP_011336293.1\|5882995_5884168_-	hypothetical protein	NA	NA	NA	NA
WP_011336294.1\|5884236_5885181_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011336295.1\|5885373_5886318_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011336296.1\|5886393_5887281_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_011336297.1\|5887351_5888317_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_011336298.1\|5888372_5888849_+	thioesterase family protein	NA	NA	NA	NA
WP_011336299.1\|5888873_5890037_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_007959758.1\|5890438_5890699_+	hypothetical protein	NA	NA	NA	NA
WP_011336300.1\|5890774_5891878_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011336301.1\|5892323_5893700_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_011336302.1\|5894134_5895082_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_039767993.1\|5895149_5895995_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011336304.1\|5895991_5897170_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-25	37.1
WP_007959745.1\|5897260_5899258_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.1e-19	27.4
WP_011336305.1\|5899684_5900278_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_011336306.1\|5900386_5901859_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_011336307.1\|5901966_5903670_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.8e-50	29.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007492

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection