CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007514	Chlorobium chlorochromatii CaD3, complete genome	2 crisprs	PD-DExK,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,RT	0	11	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_007514_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007514_1

1339649-1343792

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	PILER-CR
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CRISPRCasFinder
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CRT

62 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_007514_1

>merge|NC_007514|1|1339649-1343792|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGACCCAAAATTCTTTAAATGTTCTTAAGGGTGATTCTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACATAACAACTAACAACAACAACGGAGGCGACAATGGAAAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACATGATCCAAAAGATACCAACTGCCCGCAATTGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCAAGGGTGCCGCCTACCACTACCCAAAAACGGAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTATTGTTAATAAAACACTCTGCCTTTAGTAACGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCTACGCTTAAAAGATAAATTAGTAGCAATACCCCTAAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCAAACGGAGAAAACAATGACTTACTTCACAGGCATTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACAAAGAGGTAGGCGCAAAATTCGCCTCAAAAAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTTCCATGCTTACCTTTATGTGTCTGTACCGATGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTAGTAGTATGCGTTATGCCTACGAGTTAGGGCTTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACAGCGCAAAAACTCCGCCTTTTTTACGTCGAACGAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGTGTTTCGTAATTATCAGCAACCATCTTATCCTGCCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTCATTGACATTGAAGAGGAGGGTAAACAATGAGAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTAAAGTTAAAGTAAAGCGTGAGATTGAAGGCATGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCTAAAGTCAACGATAGAAGAAACAAAAATACTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCAAGAAGCAATTGGTAAGTTATACGGCATTTACCGTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACATCGGCTAATGCTTTTTGCGTGCTACTCGCCCCGTTTCAATCCACGCGCCCGCGGGGGGCGCGACTCAGAAATACTAAGGAGAAACCATGAACTACAAAGTTTCAATCCACGCGCCCGCGGGGGGCGCGACGCAGTTCAAACACAACAAACAACAATAAACGGAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTGTTATCAGGTCGCTTTTTGAAAATGAGGCAGCAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTTGATGCAGTAGAATGGTTTGGCTTTTGGGTAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTCGTTAATCTGTTTAAGTTTTCGTTTTCGTAGCCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACACGGGCACACGGGCAAAGATGTTAAGCAAGATATGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTATGGGCAACAGTGAAGAGGACGACGACAAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTCGCCTTTTATCTCTATTCCGCTATCAGTAAAGCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGTGGCATAGAAGAGGAGTCCAGTAATGGAGGAATGTTTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCATCAATTCCCATCATCTTTGCGAGATTGTAGGCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTGTTGACGCTTATCCTGATTTTACAGAGCTGCCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACATAAGAATCAAGAGTGTGAGATTTCCGTTTATCAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCAATATGGCAAAAGTTAGGGCTTGGTTGTGATATGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCGCACATTCGCACCAATGTTTTTAGCAAGTAGCCCTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGCAGGTCTTTTAAAATAAGGGAACTTTCTTAACGTTTCAATCCACGCGCCCGCGAAGGGCGCGACACTGTTTGATAAAGTTTAGAACCTTATGTAAGGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTAGGGCTTACAAGTCCTTTACTGCTGATAAGGCTGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCTAGCACTATCAAATATACCACCTGCTCCTCCCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCATCACCGCTCCCGCCACCAAAGCCGCAAAGCAGTGGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTTGAGCCGATATGCCTTGCTCGCAAGCCGTTAAGCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTTAACCGGCAGCCATTGCGTTTTATCGGGAGATGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTGGCTTTTCCTTGCAGCATCAGTATTACCTGTAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGGAGCTGCTCGAAAAGGATTTGGAGCGCTTTGAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCCAATCGTTCCGCGACCTTTTCGCGGCTTTTCGCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCGGCTTGAAGGTTTATGACATGACGCTTGTAGGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGTGCTGTTAGGTAGGTGCGCCCATTCTCCTCAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGGCACACACGTCAGAAATTTACAAGGGGATTCTTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGTTCCATTACTGTTTATTAAGCGCATTCACCGCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCGTAAGCGCCCGCGACTTTGGTTACACTGTGCTTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCAACGTGGGAACCGCTTGCCGCAAGCACCGTAGCTAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTATAAGACGGGTGCTCTAACCAACTGAGCTAACGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCGCGGGTTATCGGATTGTGATGATAGTGCAATAGCTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCATTCTTCTCAATCTCGCGCTCACGCATTGTCTTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCGGAGTGTATCAAGCGTTAACCGATAAGCTCTTAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCAAATTCATTCTTGTGCAGCACGAAGCAACCTACAAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACAGCACCCCCACGTTTTTACGGCTTGCCACTAAGCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTGCGTACCTTGTTGCGTACCTTTTAAGGTTATAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACAGGTAAAGCAGATGAAGAGTTTGATGCAAAAATTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACACAGCGCCGATGATTGGCTTTGGCACCTTACGTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACGCGGCTTTTTCGTAATCGTCAACATCTTCGGGTGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTTGCTGAACGGGCTTTTTTTTTAAACCTTCAGCCGCCGTTTCAATCCACGCGCCCGCGAAGGGCGCGACCTCAAACACTTCAATCGCAGCGCGATCAGCATAACCGAGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTCCATTCCATCCGTAAAGAGGTTACCGATGCGGGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTCTGGCAGCACCATTGCACAAGCAGCTTTGTTATTGGTTTCAATCCACGCGCCCGCGAAGGGCGCGACTGACTATGAGGGGTAAATGCGGCTTTAGCATAGCGGTTTCAATCCACGCGCCCGCGAAGGGCGCGAC

>NC_007514|1|1|1339649-1343792|PILER-CR
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CCAAAATTCTTTAAATGTTCTTAAGGGTGATTCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATAACAACTAACAACAACAACGGAGGCGACAATGGAAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATGATCCAAAAGATACCAACTGCCCGCAATTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAGGGTGCCGCCTACCACTACCCAAAAACGGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTATTGTTAATAAAACACTCTGCCTTTAGTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTACGCTTAAAAGATAAATTAGTAGCAATACCCCTAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAACGGAGAAAACAATGACTTACTTCACAGGCATT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AAAGAGGTAGGCGCAAAATTCGCCTCAAAAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTCCATGCTTACCTTTATGTGTCTGTACCGAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTAGTAGTATGCGTTATGCCTACGAGTTAGGGCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGCGCAAAAACTCCGCCTTTTTTACGTCGAACGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGTTTCGTAATTATCAGCAACCATCTTATCCTGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCATTGACATTGAAGAGGAGGGTAAACAATGAGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TAAAGTTAAAGTAAAGCGTGAGATTGAAGGCAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTAAAGTCAACGATAGAAGAAACAAAAATACT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAGAAGCAATTGGTAAGTTATACGGCATTTACCGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATCGGCTAATGCTTTTTGCGTGCTACTCGCCCC
GTTTCAATCCACGCGCCCGCGGGGGGCGCGAC	TCAGAAATACTAAGGAGAAACCATGAACTACAAA
GTTTCAATCCACGCGCCCGCGGGGGGCGCGAC	GCAGTTCAAACACAACAAACAACAATAAACGGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGTTATCAGGTCGCTTTTTGAAAATGAGGCAGCA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTGATGCAGTAGAATGGTTTGGCTTTTGGGTA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCGTTAATCTGTTTAAGTTTTCGTTTTCGTAGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACGGGCACACGGGCAAAGATGTTAAGCAAGATAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTATGGGCAACAGTGAAGAGGACGACGACAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCGCCTTTTATCTCTATTCCGCTATCAGTAAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGGCATAGAAGAGGAGTCCAGTAATGGAGGAATGTTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATCAATTCCCATCATCTTTGCGAGATTGTAGGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGTTGACGCTTATCCTGATTTTACAGAGCTGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATAAGAATCAAGAGTGTGAGATTTCCGTTTATCA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAATATGGCAAAAGTTAGGGCTTGGTTGTGATAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGCACATTCGCACCAATGTTTTTAGCAAGTAGCCCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GCAGGTCTTTTAAAATAAGGGAACTTTCTTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACTGTTTGATAAAGTTTAGAACCTTATGTAAGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TAGGGCTTACAAGTCCTTTACTGCTGATAAGGCTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTAGCACTATCAAATATACCACCTGCTCCTCCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATCACCGCTCCCGCCACCAAAGCCGCAAAGCAGTGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTGAGCCGATATGCCTTGCTCGCAAGCCGTTAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTAACCGGCAGCCATTGCGTTTTATCGGGAGATG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTGGCTTTTCCTTGCAGCATCAGTATTACCTGTAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GGAGCTGCTCGAAAAGGATTTGGAGCGCTTTGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CCAATCGTTCCGCGACCTTTTCGCGGCTTTTCGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGGCTTGAAGGTTTATGACATGACGCTTGTAGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGCTGTTAGGTAGGTGCGCCCATTCTCCTCAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GGCACACACGTCAGAAATTTACAAGGGGATTCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTTCCATTACTGTTTATTAAGCGCATTCACCGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGTAAGCGCCCGCGACTTTGGTTACACTGTGCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAACGTGGGAACCGCTTGCCGCAAGCACCGTAGCTA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TATAAGACGGGTGCTCTAACCAACTGAGCTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGCGGGTTATCGGATTGTGATGATAGTGCAATAGCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATTCTTCTCAATCTCGCGCTCACGCATTGTCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGGAGTGTATCAAGCGTTAACCGATAAGCTCTTAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAATTCATTCTTGTGCAGCACGAAGCAACCTACAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGCACCCCCACGTTTTTACGGCTTGCCACTAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGCGTACCTTGTTGCGTACCTTTTAAGGTTATA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGGTAAAGCAGATGAAGAGTTTGATGCAAAAATT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACAGCGCCGATGATTGGCTTTGGCACCTTACGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GCGGCTTTTTCGTAATCGTCAACATCTTCGGGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTGCTGAACGGGCTTTTTTTTTAAACCTTCAGCCGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTCAAACACTTCAATCGCAGCGCGATCAGCATAACCGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCCATTCCATCCGTAAAGAGGTTACCGATGCGGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCTGGCAGCACCATTGCACAAGCAGCTTTGTTATTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGACTATGAGGGGTAAATGCGGCTTTAGCATAGCG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC

>NC_007514|1|1|1339649-1343792|CRISPRCasFinder
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CCAAAATTCTTTAAATGTTCTTAAGGGTGATTCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATAACAACTAACAACAACAACGGAGGCGACAATGGAAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATGATCCAAAAGATACCAACTGCCCGCAATTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAGGGTGCCGCCTACCACTACCCAAAAACGGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTATTGTTAATAAAACACTCTGCCTTTAGTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTACGCTTAAAAGATAAATTAGTAGCAATACCCCTAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAACGGAGAAAACAATGACTTACTTCACAGGCATT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AAAGAGGTAGGCGCAAAATTCGCCTCAAAAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTCCATGCTTACCTTTATGTGTCTGTACCGAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTAGTAGTATGCGTTATGCCTACGAGTTAGGGCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGCGCAAAAACTCCGCCTTTTTTACGTCGAACGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGTTTCGTAATTATCAGCAACCATCTTATCCTGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCATTGACATTGAAGAGGAGGGTAAACAATGAGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TAAAGTTAAAGTAAAGCGTGAGATTGAAGGCAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTAAAGTCAACGATAGAAGAAACAAAAATACT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAGAAGCAATTGGTAAGTTATACGGCATTTACCGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATCGGCTAATGCTTTTTGCGTGCTACTCGCCCC
GTTTCAATCCACGCGCCCGCGGGGGGCGCGAC	TCAGAAATACTAAGGAGAAACCATGAACTACAAA
GTTTCAATCCACGCGCCCGCGGGGGGCGCGAC	GCAGTTCAAACACAACAAACAACAATAAACGGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGTTATCAGGTCGCTTTTTGAAAATGAGGCAGCA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTGATGCAGTAGAATGGTTTGGCTTTTGGGTA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCGTTAATCTGTTTAAGTTTTCGTTTTCGTAGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACGGGCACACGGGCAAAGATGTTAAGCAAGATAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTATGGGCAACAGTGAAGAGGACGACGACAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCGCCTTTTATCTCTATTCCGCTATCAGTAAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGGCATAGAAGAGGAGTCCAGTAATGGAGGAATGTTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATCAATTCCCATCATCTTTGCGAGATTGTAGGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGTTGACGCTTATCCTGATTTTACAGAGCTGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATAAGAATCAAGAGTGTGAGATTTCCGTTTATCA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAATATGGCAAAAGTTAGGGCTTGGTTGTGATAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGCACATTCGCACCAATGTTTTTAGCAAGTAGCCCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GCAGGTCTTTTAAAATAAGGGAACTTTCTTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACTGTTTGATAAAGTTTAGAACCTTATGTAAGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TAGGGCTTACAAGTCCTTTACTGCTGATAAGGCTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTAGCACTATCAAATATACCACCTGCTCCTCCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATCACCGCTCCCGCCACCAAAGCCGCAAAGCAGTGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTGAGCCGATATGCCTTGCTCGCAAGCCGTTAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTAACCGGCAGCCATTGCGTTTTATCGGGAGATG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTGGCTTTTCCTTGCAGCATCAGTATTACCTGTAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GGAGCTGCTCGAAAAGGATTTGGAGCGCTTTGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CCAATCGTTCCGCGACCTTTTCGCGGCTTTTCGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGGCTTGAAGGTTTATGACATGACGCTTGTAGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGCTGTTAGGTAGGTGCGCCCATTCTCCTCAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GGCACACACGTCAGAAATTTACAAGGGGATTCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTTCCATTACTGTTTATTAAGCGCATTCACCGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGTAAGCGCCCGCGACTTTGGTTACACTGTGCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAACGTGGGAACCGCTTGCCGCAAGCACCGTAGCTA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TATAAGACGGGTGCTCTAACCAACTGAGCTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGCGGGTTATCGGATTGTGATGATAGTGCAATAGCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATTCTTCTCAATCTCGCGCTCACGCATTGTCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGGAGTGTATCAAGCGTTAACCGATAAGCTCTTAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAATTCATTCTTGTGCAGCACGAAGCAACCTACAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGCACCCCCACGTTTTTACGGCTTGCCACTAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGCGTACCTTGTTGCGTACCTTTTAAGGTTATA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGGTAAAGCAGATGAAGAGTTTGATGCAAAAATT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACAGCGCCGATGATTGGCTTTGGCACCTTACGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GCGGCTTTTTCGTAATCGTCAACATCTTCGGGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTGCTGAACGGGCTTTTTTTTTAAACCTTCAGCCGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTCAAACACTTCAATCGCAGCGCGATCAGCATAACCGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCCATTCCATCCGTAAAGAGGTTACCGATGCGGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCTGGCAGCACCATTGCACAAGCAGCTTTGTTATTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGACTATGAGGGGTAAATGCGGCTTTAGCATAGCG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC

>NC_007514|1|1|1339649-1343792|CRT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CCAAAATTCTTTAAATGTTCTTAAGGGTGATTCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATAACAACTAACAACAACAACGGAGGCGACAATGGAAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATGATCCAAAAGATACCAACTGCCCGCAATTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAGGGTGCCGCCTACCACTACCCAAAAACGGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTATTGTTAATAAAACACTCTGCCTTTAGTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTACGCTTAAAAGATAAATTAGTAGCAATACCCCTAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAACGGAGAAAACAATGACTTACTTCACAGGCATT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AAAGAGGTAGGCGCAAAATTCGCCTCAAAAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTCCATGCTTACCTTTATGTGTCTGTACCGAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTAGTAGTATGCGTTATGCCTACGAGTTAGGGCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGCGCAAAAACTCCGCCTTTTTTACGTCGAACGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGTTTCGTAATTATCAGCAACCATCTTATCCTGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCATTGACATTGAAGAGGAGGGTAAACAATGAGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TAAAGTTAAAGTAAAGCGTGAGATTGAAGGCAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTAAAGTCAACGATAGAAGAAACAAAAATACT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAGAAGCAATTGGTAAGTTATACGGCATTTACCGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATCGGCTAATGCTTTTTGCGTGCTACTCGCCCC
GTTTCAATCCACGCGCCCGCGGGGGGCGCGAC	TCAGAAATACTAAGGAGAAACCATGAACTACAAA
GTTTCAATCCACGCGCCCGCGGGGGGCGCGAC	GCAGTTCAAACACAACAAACAACAATAAACGGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGTTATCAGGTCGCTTTTTGAAAATGAGGCAGCA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTGATGCAGTAGAATGGTTTGGCTTTTGGGTA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCGTTAATCTGTTTAAGTTTTCGTTTTCGTAGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACGGGCACACGGGCAAAGATGTTAAGCAAGATAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTATGGGCAACAGTGAAGAGGACGACGACAAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCGCCTTTTATCTCTATTCCGCTATCAGTAAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGGCATAGAAGAGGAGTCCAGTAATGGAGGAATGTTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATCAATTCCCATCATCTTTGCGAGATTGTAGGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGTTGACGCTTATCCTGATTTTACAGAGCTGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ATAAGAATCAAGAGTGTGAGATTTCCGTTTATCA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAATATGGCAAAAGTTAGGGCTTGGTTGTGATAT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGCACATTCGCACCAATGTTTTTAGCAAGTAGCCCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GCAGGTCTTTTAAAATAAGGGAACTTTCTTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACTGTTTGATAAAGTTTAGAACCTTATGTAAGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TAGGGCTTACAAGTCCTTTACTGCTGATAAGGCTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTAGCACTATCAAATATACCACCTGCTCCTCCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATCACCGCTCCCGCCACCAAAGCCGCAAAGCAGTGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTGAGCCGATATGCCTTGCTCGCAAGCCGTTAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTTAACCGGCAGCCATTGCGTTTTATCGGGAGATG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTGGCTTTTCCTTGCAGCATCAGTATTACCTGTAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GGAGCTGCTCGAAAAGGATTTGGAGCGCTTTGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CCAATCGTTCCGCGACCTTTTCGCGGCTTTTCGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGGCTTGAAGGTTTATGACATGACGCTTGTAGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTGCTGTTAGGTAGGTGCGCCCATTCTCCTCAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GGCACACACGTCAGAAATTTACAAGGGGATTCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GTTCCATTACTGTTTATTAAGCGCATTCACCGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGTAAGCGCCCGCGACTTTGGTTACACTGTGCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAACGTGGGAACCGCTTGCCGCAAGCACCGTAGCTA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TATAAGACGGGTGCTCTAACCAACTGAGCTAAC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGCGGGTTATCGGATTGTGATGATAGTGCAATAGCT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CATTCTTCTCAATCTCGCGCTCACGCATTGTCTT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CGGAGTGTATCAAGCGTTAACCGATAAGCTCTTAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CAAATTCATTCTTGTGCAGCACGAAGCAACCTACAA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGCACCCCCACGTTTTTACGGCTTGCCACTAAGC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGCGTACCTTGTTGCGTACCTTTTAAGGTTATA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	AGGTAAAGCAGATGAAGAGTTTGATGCAAAAATT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	ACAGCGCCGATGATTGGCTTTGGCACCTTACGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	GCGGCTTTTTCGTAATCGTCAACATCTTCGGGT
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TTGCTGAACGGGCTTTTTTTTTAAACCTTCAGCCGCC
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	CTCAAACACTTCAATCGCAGCGCGATCAGCATAACCGA
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCCATTCCATCCGTAAAGAGGTTACCGATGCGGG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TCTGGCAGCACCATTGCACAAGCAGCTTTGTTATTG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC	TGACTATGAGGGGTAAATGCGGCTTTAGCATAGCG
GTTTCAATCCACGCGCCCGCGAAGGGCGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007514.1\|WP_011362024.1\|1338915_1339215_+\|hypothetical-protein	unknown	unknown	unknown
NC_007514.1\|WP_156772568.1\|1330701_1332054_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_007514.1\|WP_011362037.1\|1349523_1351998_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_007514.1\|WP_011362025.1\|1339236_1339419_+\|hypothetical-protein	unknown	unknown	unknown
NC_007514.1\|WP_011362036.1\|1348797_1349514_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_007514.1\|WP_011362039.1\|1353576_1355097_-\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NC_007514.1\|WP_011362032.1\|1344305_1345337_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_007514.1\|WP_156772622.1\|1333621_1334287_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NC_007514.1\|WP_011362021.1\|1335618_1336854_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NC_007514.1\|WP_156772569.1\|1351981_1352152_-\|hypothetical-protein	unknown	unknown	unknown
NC_007514.1\|WP_011362035.1\|1346872_1348801_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_007514.1\|WP_011362034.1\|1346001_1346844_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NC_007514.1\|WP_083754229.1\|1337041_1338007_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NC_007514.1\|WP_011362023.1\|1338726_1338909_+\|hypothetical-protein	unknown	unknown	unknown
NC_007514.1\|WP_011362033.1\|1345333_1345981_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_007514.1\|WP_011362018.1\|1332329_1333589_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_007514.1\|WP_011362020.1\|1334381_1335596_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NC_007514.1\|WP_011362038.1\|1352480_1353599_-\|threonine-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|273466
NC_007514.1\|WP_011362031.1\|1343969_1344260_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_007514.1\|WP_041466475.1\|1328821_1330030_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942

Protein	Function_ID	Function_description	E-value
NC_007514.1\|WP_156772568.1\|1330701_1332054_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.64087e-38
NC_007514.1\|WP_011362039.1\|1353576_1355097_-\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NC_007514.1\|WP_011362037.1\|1349523_1351998_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.09429e-49
NC_007514.1\|WP_011362032.1\|1344305_1345337_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_007514.1\|WP_156772622.1\|1333621_1334287_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	8.02712e-111
NC_007514.1\|WP_011362021.1\|1335618_1336854_+\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	1.34296e-47
NC_007514.1\|WP_011362035.1\|1346872_1348801_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_007514.1\|WP_011362034.1\|1346001_1346844_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.6118e-110
NC_007514.1\|WP_083754229.1\|1337041_1338007_-\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	1.38321e-05
NC_007514.1\|WP_011362036.1\|1348797_1349514_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.09193e-97
NC_007514.1\|WP_011362033.1\|1345333_1345981_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.12291e-50
NC_007514.1\|WP_011362018.1\|1332329_1333589_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.23742e-43
NC_007514.1\|WP_011362020.1\|1334381_1335596_+\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	1.22396e-37
NC_007514.1\|WP_011362038.1\|1352480_1353599_-\|threonine-phosphate-decarboxylase	gnl\|CDD\|273466	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see pfamAM:pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.36722e-126
NC_007514.1\|WP_011362031.1\|1343969_1344260_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.3514e-34
NC_007514.1\|WP_041466475.1\|1328821_1330030_-\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	3.03125e-07

>NC_007514.1|WP_011362025.1|1339236_1339419_+|hypothetical-protein
MDDLLIDLVINEHIAVFGVEPVFTGRSAFLSQEEIIANIDAAIRKGEPYVEDDVPDDVDI
>NC_007514.1|WP_011362024.1|1338915_1339215_+|hypothetical-protein
MGISSRDVSKLNKTIQHTYNGGSTMTREEIIKRLDEIFQQKDIRHGVEVRKLHVELFGVEPVFTGYYYECEKGALEWMIESMLDGKPFVEPELEDGEFT
>NC_007514.1|WP_011362023.1|1338726_1338909_+|hypothetical-protein
MEISLLQVVIDEHVAVFGVEPVFTGWSAFLSEDEIATNVCAAIDKGEPYVEEEVPDGVDI
>NC_007514.1|WP_083754229.1|1337041_1338007_-|hypothetical-protein
MTSDQLPTTQQPDDYDSPWKEAIEHYFPEFMAFYFPNAYTAIDWSTPYHFLDQELRTIVPQSAQGKRVVDKLVKVQLLDGKERWLYIHIEVQGRREVNFPKRVFICNYRIFDQYGVPVASFVILTDTDYNWRPTSYSYEFAGCKHTLEFPIVKLLDYEPRMEELLASDNAFGLITAAHLLTQKTSDNAFHRLDAKKQLILLLYEREWERDRVKELFRVLDWFLELPKELNQQLQTEIQQIEEGQKMKYISTFERYAMEEGIEKGKELGVLEGMERGKVEGKLEGLEEGLMKGRLEVAQRLVAGGMSKAEAASFAGVSVDLL
>NC_007514.1|WP_011362021.1|1335618_1336854_+|FtsX-like-permease-family-protein
MLFREIIQQALLSLSVNKLRSGLTIMGVAVGVFSIIAVMTALDAIDASIESGLSSLGASTFQMQKNPPTTLGRAHGRNLYANRRDISWQEAQRFKKEMEGKSKTVGLVIQSKAHQANYGNLSTNPDVSLVGGDEHFALANGYTIAEGRNVVESDIRSQRNVVVLGSEVAATLFPAGNSALQKKIRLNGEVLTVIGVFAKKGSAFGQSQDNMALLPITRYLSHINEKSSIAITVEATSQADYARTMDRAIGAMRLARGLTIQQSNDFEILSNESLLDSFRDIKQAVTTGAFLISMTALLTAGVGIMNIMLVSVTERTREIGIRKSVGAPRTSILRQFLLEALFLSLAGGAIGIVTGLGAGNLVALQFNLPPLFPWLWIMIALVVCSTVGIAFGIFPAWKAATLNPVDALRRR
>NC_007514.1|WP_011362020.1|1334381_1335596_+|FtsX-like-permease-family-protein
MALYQIKANKLRSFLTALGVIIGIVAISMMGTAINGIERGFDKSLAMLGYDVVYVQKVSWSGMGEWWRFRNRPDIKTDYASQINRIIAETPNSELLLAVPQRSTYQASATYRERTLEQVFALGSTSDYLATASGTLTAGRFFTASEAASGAMVCSVGNDIAESLFPNEPALGKTIKLKNRKFRIIGVFRKQGKFLGLFSFDNQVIMPLTAFERVYGKDQFTSIRIKIKSVEKLELAKEELLGIMRRLRHLPPNKEEDFSINEQQAFKSQLDPIKNGIALAGIFITGMSLFVGAIGIMNITFVSVKERTREIGLRKALGARRRTILLQFLIESVMICLAGGMSGLVVTLFITLVAGMVAPDVPLSFSPSLLMLSLALSVATGIISGIAPAITASRLEAADALRYE
>NC_007514.1|WP_156772622.1|1333621_1334287_+|ATP-binding-cassette-domain-containing-protein
MRELCKYYVMGDETVRALDGITLEFKHNDYAAIMGPSGSGKSTLMNILGCLDSPTSGTYELNGEQVADMDDDELARIRNRDIGFVFQTFNLLPRLNCLRNVELPLIYAGVPPEEREARAVAALQQVGLAERIRHKPSELSGGQIQRVAIARALVNKPAIILADEPTGNLDTATSHDIMRMFSKLSEEGNTIILITHEEDIARCTQRLIRLRDGKIESDVRG
>NC_007514.1|WP_011362018.1|1332329_1333589_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSKKKNSINRKTLWLLLAALVIGSGSLIFWLRSREKPIEITTEKAFEKEVVHLITATGTIQPELVVAMSPDVSGEIIELPIKDGEEVKQGALLFKIQPDIYVNQVQQSQAQLNAALSQSAEANARKLKAEDDFRKANLLYKEKLISQTDYLASKTNAEAATAAYKASLFAVDQQKSLLVQNRDRMNKTTVRAPINGTIIALNSKAGERVVGTGQFPGTEVLRLANLDSMQVEVEVNENDIVKVTQGNPVTITVDAFGDRKFSGVVREISNSAIAKAAGTQEEVTNFAVKIRILNHNRLLKPGMSATADIEAERISKALVVPIQSVTIRGASKPQHDEGEQKGVSVAPSGKASEGQQGVFVVSKNKAWFRPVTTGTTDNTHIIVTSGIRKGEEVVSGSYSAITNQLKNGSLIKRLTPETP
>NC_007514.1|WP_156772568.1|1330701_1332054_+|TolC-family-protein
MAVSLQVYAGENATPTRLTLEQCITIALERATPLKKADNNLTLQGTDVLQRYGSFLPRLTLSAGYTPVQQQKSYTTLSGTMPPTLLTTESDALSMQLTTSLNLFNGFGDMAALQAGLNRRDAARLSVARARETVVYDVTQAYYQALLDRELLLIARENLQASRDQLTLTERQYQAGLKSLIDREQQAAETADSQLRVMKAESRAEQSLLELLRRLQLDPLTSLELQTAADVVNGDAPYTLAADELIARAREQRNDLKSQQAQSKANRWQEREAAAQRYPSLDLNLTASTSATGDVEQRIAGIEKKYSYPPLSDQLGNATSYSVTLSMNWVLFDGFRSRYSLQSAHLNYLNQQLDVEDAKRNLAIDVRKAIAEYDAARQQISAARVSLQAASAAFNGIKRKYELGAATFVELSSARAALFNARSSLSQATYSLALQKNILDYVSGSTSFSK
>NC_007514.1|WP_041466475.1|1328821_1330030_-|CHAT-domain-containing-protein
MPTVLIVSASPLDQDRLRLNAEFRDIRHALQRSRNREDWVIESNEAVTVDDLRRALLDFRPTIVHFSGHGGGLDGLCFESTEGRTNSADAESLAKLFHHFKDDLKCVVLNACYSKVQGDVIRQEIDYVVGMSSAVEDKSAANFAVAFYDAVFAGTDFRTAFDLGCTALDLNNLPDADVPIFMTGSHLKPTDLHDSAYIAEIEKVLYSYINTPFSERWRYTTTGELLRAVMEKHYAGNMHRLVPKVSVISMKQIADEHWVVAVDVVSSLMYMRIKNRSVSVEWEASVGLWSVPVKTYLALGSREPLLARVNAELDTYYNFEFANEQHRFQSVSLCAVSGPMLHGYVERGSKVYEELIDILSDGNEHAITLEIEQATDHTDMPLIKRVLSRTWICSQPQDTKNA
>NC_007514.1|WP_011362031.1|1343969_1344260_-|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTESPDGKRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWTKLRAKLLREMDPNRDSLRFYFLGSNWQNHIEHEGAKEPRDLEGVLIL
>NC_007514.1|WP_011362032.1|1344305_1345337_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKFLNTLYVTSQGAYLSKEGECAVISIEKEVKTRIPLHMLDGIICFGAVTCSPFLLGHCAEQGVTVTFLTQYGKYLCQVQGATRGNILLRRAQYRIADNEAQSAALSRSFVIGKIGNARITLARTLRDHPDKVDALRLKQAQHHLAECIQHLQHETNQERIRGIEGEAAKAYFEVFNECITSPDSHFQFKGRSRRPPLDRVNCLLSFFYTLLTHDVRSALEACGLDPAAGFLHKDRPGRPSLALDMVEEFRSYIADRLTLTLINRGQIHANDFTVSETGAVLLKDDARKKLLTAWQERKQEVIEHPFVKEKMEVGLLWHMQAMLLARHIRGDLDVYPPFVWK
>NC_007514.1|WP_011362033.1|1345333_1345981_-|CRISPR-associated-protein-Cas4
MYPESDFIAISALQHFAFCPRQCALIHLEQIWSENMYTAEGRELHERVDEGKTSYKSGVRITRSEPLRNATLGIAGVADVIEWHKQPNGKELPFPVEYKRGKPKKHNADKIQLCAQALCLEEMLGIHIPSGALFYGETMHRLEVEFTPPLREQTRGAAEGIHELFERGLTPPPDYSAKCKQCSLLEVCQPNLLAQHNTARNYLASLVQTLSAEDA
>NC_007514.1|WP_011362034.1|1346001_1346844_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLNQKIDFAIIMRVTNANPNGDPLNGNRPRTDLDGHGEMTDVCLKRKIRNRIMELKDKEQKYQFDIFVQPDDSKRDSHTSLKARFESEIGKNVKDKDDAAKKACKKWFDVRAFGQLFAFDGEESSGLSIPVRGPVSIHSAFSVEPVNVSSIQITKSVSGNEGKNGKRSSDTMGMKHRVDYGIYVTYGSMNPQLAERTGFSDEDAKVIMEILPKLFENDASSARPDGSMEVVSVIWWKHGSKAGKHSSAKVHKSLHVNEDGTYRLDDLEGLTPECINGF
>NC_007514.1|WP_011362035.1|1346872_1348801_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWMQRLCETYDNAHNKVGDYNDDAILLPLYHTTMTCNIEVTLNENGEFVQAKPSEKKKIIIIPCTESSAGRSGDSPKAHPLSDKLQYIAGDFSHYGGEVTSGFKNDPEEPFRQLYQQLTEWSEASPDKYKLRAVKRYLEKKRLIEDLIEAGVLHLDEDRKLLKKWDSKGKKKTDKPPIFESITNVNDATVGWHVEKKGEPTEPLWKDKDIHKAWQAYYESRKINPKLCFISGRSDVAPAEQHPKKILQGASNAKLISSNDKKGFTFRGRFTTAEEACTISAVASQKMHNALSWLVERQGYNKGTLNIVAWAVSGGNIPDPMKETAPYDYDDLGDDYNAAQAFGLAFKKRIAGYRARISSTDSILVLAFDAATSGRASLTYYRELTGSDFLDRLERWYARHEWLYSKPEKKRGFFIQVRSPEQIAKDIYEHNKTEDKEKKTDDIIRSVVQRLLPCIIDGQKVPFDLVVAARNRASKPMSFKKYKEDWKNREDWENTLSTACALFRGYYYTNFQEEYSMSLDPNRTTRDYLYGRLLAVAESLEKSALGLADEGRSSTAERYMQQFAERPFNTWKTIELSLSPYIARLQSNAPGLKKFYTDKLDEIHCLFNPDDFENNEPLTGEFLLGYHCQRLKNYEGSSKKD
>NC_007514.1|WP_011362036.1|1348797_1349514_-|type-I-C-CRISPR-associated-protein-Cas5
MKNSIEFKVYGREAMFTDPVSRIGGEKCSYHIPTYEALKGIVKSIYWKPTIIWVVDKVRVMKPIRTKTKCLKPLKYHEKGNSLAIYNYLCDVEYQVLAHFEWNLHRPELAQDCINGKHYSVALRALDKGGRQDIFLGTRECQGYVEPCKFGEGKGEYDNISELAFGFTFHGFDYPDETGQKMFRSRFWNPKMVKGVIDFIRPEECLPEHCKPIHEMSMKPFGIDTNQRSVIKEEEVWQ
>NC_007514.1|WP_011362037.1|1349523_1351998_-|CRISPR-associated-helicase/endonuclease-Cas3
MDAFDNKLYAHTLEGVKNKSQWQTLREHALSTAHLASDYATSFGLAECGYWLGLIHDLGKSLPQFQQRLEDDRVKADHKHAGGLFLWDKLNNGTKPSHLAAQCLALCVISHHGGLVDCLNQLGEDNFINTIENKLYQANLKDSLENLQLDTELEDNIKKISGARSLVQDEIDFFFQNILQQAKKYWPTEDDKNKRKKLELFRIGLMTKMLFSCLIDADHTDTANFHDEERKNKNLPHLPKWDELRDMVERYLETLPQTSSVDIERKRISDKCIQASVCESGTYLLTVPTGGGKTLASMRFALHHAVNREPYIPFKRIIYVIPYTTIIEQNAQAIRKVFVSQLNEDVLNEMILESHSNVLPNEENRNNRVLAENWDAPIIFTTNVQFLEAFYGVGTRNARKLHNLANSIIIFDEAQTLPVRCLHLFCHAVNFLVEHCNCTAILCTATQPLLHEIPAEHGALWLSKNFQILPDKFRKDSADSLKRVTVIDECKPQGWRLEEVADKVSCIHKQGNSCIIILNTKADTRELYTILRKRHGEELTYHLSTAMCAAHRMDILSEVKTLLRNNQPVICVSTQLIEAGIDIDFDTGIRALAGIDSIAQAAGRINRNGKKPADSALYIQNISGENLKNLQDIAVAQVEAQKVLREFKENPNEFGNSLLSEAVMKRYFKFYIFNRKDEMTYKIKSDNLVNLLSSNVNAVGEYKRTHKNQPYPNILRQSFATAAREFKVINSDTQGIFVPYNDEARGLLNQLRNTKSSEFQRYLFRRLQRYTVNVYPYMLKKLTKIHALEPLCENSGILALYEIFYDSRFGVNINSTISPDMLIQ
>NC_007514.1|WP_156772569.1|1351981_1352152_-|hypothetical-protein
MEKVITQPPAAHLRLRDDGSYDVHELKDHLQGVARRAAQFAEELMVRKAMLYGCLR
>NC_007514.1|WP_011362038.1|1352480_1353599_-|threonine-phosphate-decarboxylase
MNNLFCHKHGGAPIKSNQPDFSVNISPIMPPIGSLSLSDFALHNYPSIDGSGIRDFYVARFGLDGDTVLPTNGAIEAIYLVPRALGVRRVLTLTPSFHDYERASLVAGATVSHLPLDAETGFALPSLEQFATALQEAEADALFVGNPNNPTGTAIEPEVIMALASRFPWMWFIVDEAFIQFTANFPHNSLMKQVSALRNIIVVHSLTKFYALPGLRLGAVVAHPDVINRLLDVKEPWTVNAIAEEVARRLLHCSDYDAEVRSIIAAERLRMSAQFARSGEIVLVGGAANFFLARWIGGCSLDVLFARLAERNLYVRDCRNFRGLEANYFRFAIRTPAENERLLEALLPAIRPTTATMRTTAYQRNFSRTPFC
>NC_007514.1|WP_011362039.1|1353576_1355097_-|cobyric-acid-synthase
MVTPTKTYRSLAILGTASDVGKSIVATALCRIFRNAGIDVAPYKAQNMSNNSGVTPDGLEIGRAQIAQAEAACVVPTADMNPVLLKPNTDIGAQVVLQGRVCSNESAQGYFRDTSRWAEAARESLLRLKQKHELLVIEGAGSCAEMNLYPRDFVNFRTAREADAAVILVADIDRGGVFAQVVGTLAVIPPEDRALVKGVIINRFRGDSELFREGITMLEEMSGVPVLGVIPYFRHFAIDAEDAVPLSAKVDPAQEPETGKVGVAAIYFPHISNFTDLSPLEHDPSVTLHYLHHPKPLSAYKVLILPGSKNVRGDYAWLQQMGWEKEIRAFREAGGLVIGICGGYQMLGCSIADPYGVEGESGTTQTLGLLETETLLEQEKYLANSEGVLVGTSIKAFGYEIHNGRTTVGANCHPLMNIVARNNHPESDVDGVVSADGRVIGTYFHGIFNEPAVKQWFLQQADSTYTLQPHERGRQESYELLADHFRQHLDVNKLFELIDYEQSLLP

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Crispr_ID: NC_007514_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007514_2

2511697-2513118

Orphan

I-A,II-B,III-A

Consensus_repeat	Method
ATTTCAATTCCATATTGGTGCAATTAGAAG	PILER-CR
ATTTCAATTCCATATTGGTGCAATTAGAAG	CRISPRCasFinder
ATTTCAATTCCATATTGGTGCAATTAGAAG	CRT

21 spacers

The CRISPR arrays of NC_007514_2

>merge|NC_007514|2|2511697-2513118|PILER-CR,CRISPRCasFinder,CRT
ATTTCAATTCCATATTGGTGCAATTAGAAGTAAAGATTGTGAGATTGAATGTGTATGCAGTGAATGATTTCAATTCCATATTGGTGCAATTAGAAGCCTTGCTGTAGGAAACATCGGGAATACCCTTCTTTATTTCAATTCCATATTGGTGCAATTAGAAGCAACAAAGGGTGTTGCTGCGTAGGTTGTTGGTGATATTTCAATTCCATATTGGTGCAATTAGAAGATAAAGACTAACTTCAGTAAGAGTAATCAGGTTTTAAATTTCAATTCCATATTGGTGCAATTAGAAGTTGGGCTTGGTGGTTCAACGTCGCCTCGCACACTTGATTTCAATTCCATATTGGTGCAATTAGAAGGTATCCGACAGGACAGATTTACAAAAGCACTGATAGATTTCAATTCCATATTGGTGCAATTAGAAGGTGTGGTTGCTTGCTTGTGCATAGCTAATAGGTGTGATTTCAATTCCATATTGGTGCAATTAGAAGGCTGACTGTGTACTGCACACGATTGCGGCGAAATAATTTCAATTCCATATTGGTGCAATTAGAAGAAATAATAAAGCTTCGTTGCCTTGAACGTATATCATATTTCAATTCCATATTGGTGCAATTAGAAGAAAGCGGGGTGTGCTGCCTTGACTGATCGGCGGGAATTTCAATTCCATATTGGTGCAATTAGAAGAGCCAGCTCTTGAATTGCAAATATTTTTGTTTCACTTAATTTCAATTCCATATTGGTGCAATTAGAAGCAGAACTAATTAAGCATCGTTGCCTTGAACGGCTATCTTTATTTCAATTCCATATTGGTGCAATTAGAAGTGCCTCGCTCGGTTTGTCGCGCCCTGCCTCCGCTATACATTTCAATTCCATATTGGTGCAATTAGAAGTCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGTATTTCAATTCCATATTGGTGCAATTAGAAGTTACGAACAGACACAACGCAAAACAAAGATGATATTGATTTCAATTCCATATTGGTGCAATTAGAAGTAAACCGTTTACGCTGTAAACAGCACAGCTTTTTCCATCATTTCAATTCCATATTGGTGCAATTAGAAGTCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGTATTTCAATTCCATATTGGTGCAATTAGAAGTTACGAACAGACACAACGCAAAACAAAGATGATATTGATTTCAATTCCATATTGGTGCAATTAGAAGTTCTCCCCAACAAGGTTAAAGAACGATATGCCTGTATTTCAATTCCATATTGGTGCAATTAGAAGTGGAAATCTCAACAAGAGCGTTATTGTATATCTTAATTTCAATTCCATATTGGTGCAATTAGAAGCATAGGAAAAACCGATTACGAAGTGCTTTGTGATTGATTTCAATTCCATATTGGTGCAATTAGAAG

>NC_007514|2|2|2511697-2513118|PILER-CR
ATTTCAATTCCATATTGGTGCAATTAGAAG	TAAAGATTGTGAGATTGAATGTGTATGCAGTGAATG
ATTTCAATTCCATATTGGTGCAATTAGAAG	CCTTGCTGTAGGAAACATCGGGAATACCCTTCTTT
ATTTCAATTCCATATTGGTGCAATTAGAAG	CAACAAAGGGTGTTGCTGCGTAGGTTGTTGGTGAT
ATTTCAATTCCATATTGGTGCAATTAGAAG	ATAAAGACTAACTTCAGTAAGAGTAATCAGGTTTTAA
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTGGGCTTGGTGGTTCAACGTCGCCTCGCACACTTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GTATCCGACAGGACAGATTTACAAAAGCACTGATAG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GTGTGGTTGCTTGCTTGTGCATAGCTAATAGGTGTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GCTGACTGTGTACTGCACACGATTGCGGCGAAATA
ATTTCAATTCCATATTGGTGCAATTAGAAG	AAATAATAAAGCTTCGTTGCCTTGAACGTATATCAT
ATTTCAATTCCATATTGGTGCAATTAGAAG	AAAGCGGGGTGTGCTGCCTTGACTGATCGGCGGGA
ATTTCAATTCCATATTGGTGCAATTAGAAG	AGCCAGCTCTTGAATTGCAAATATTTTTGTTTCACTTA
ATTTCAATTCCATATTGGTGCAATTAGAAG	CAGAACTAATTAAGCATCGTTGCCTTGAACGGCTATCTTT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TGCCTCGCTCGGTTTGTCGCGCCCTGCCTCCGCTATAC
ATTTCAATTCCATATTGGTGCAATTAGAAG	TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTACGAACAGACACAACGCAAAACAAAGATGATATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	TAAACCGTTTACGCTGTAAACAGCACAGCTTTTTCCATC
ATTTCAATTCCATATTGGTGCAATTAGAAG	TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTACGAACAGACACAACGCAAAACAAAGATGATATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTCTCCCCAACAAGGTTAAAGAACGATATGCCTGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TGGAAATCTCAACAAGAGCGTTATTGTATATCTTA
ATTTCAATTCCATATTGGTGCAATTAGAAG	CATAGGAAAAACCGATTACGAAGTGCTTTGTGATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG

>NC_007514|2|2|2511697-2513118|CRISPRCasFinder
ATTTCAATTCCATATTGGTGCAATTAGAAG	TAAAGATTGTGAGATTGAATGTGTATGCAGTGAATG
ATTTCAATTCCATATTGGTGCAATTAGAAG	CCTTGCTGTAGGAAACATCGGGAATACCCTTCTTT
ATTTCAATTCCATATTGGTGCAATTAGAAG	CAACAAAGGGTGTTGCTGCGTAGGTTGTTGGTGAT
ATTTCAATTCCATATTGGTGCAATTAGAAG	ATAAAGACTAACTTCAGTAAGAGTAATCAGGTTTTAA
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTGGGCTTGGTGGTTCAACGTCGCCTCGCACACTTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GTATCCGACAGGACAGATTTACAAAAGCACTGATAG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GTGTGGTTGCTTGCTTGTGCATAGCTAATAGGTGTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GCTGACTGTGTACTGCACACGATTGCGGCGAAATA
ATTTCAATTCCATATTGGTGCAATTAGAAG	AAATAATAAAGCTTCGTTGCCTTGAACGTATATCAT
ATTTCAATTCCATATTGGTGCAATTAGAAG	AAAGCGGGGTGTGCTGCCTTGACTGATCGGCGGGA
ATTTCAATTCCATATTGGTGCAATTAGAAG	AGCCAGCTCTTGAATTGCAAATATTTTTGTTTCACTTA
ATTTCAATTCCATATTGGTGCAATTAGAAG	CAGAACTAATTAAGCATCGTTGCCTTGAACGGCTATCTTT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TGCCTCGCTCGGTTTGTCGCGCCCTGCCTCCGCTATAC
ATTTCAATTCCATATTGGTGCAATTAGAAG	TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTACGAACAGACACAACGCAAAACAAAGATGATATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	TAAACCGTTTACGCTGTAAACAGCACAGCTTTTTCCATC
ATTTCAATTCCATATTGGTGCAATTAGAAG	TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTACGAACAGACACAACGCAAAACAAAGATGATATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTCTCCCCAACAAGGTTAAAGAACGATATGCCTGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TGGAAATCTCAACAAGAGCGTTATTGTATATCTTA
ATTTCAATTCCATATTGGTGCAATTAGAAG	CATAGGAAAAACCGATTACGAAGTGCTTTGTGATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG

>NC_007514|2|2|2511697-2513118|CRT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TAAAGATTGTGAGATTGAATGTGTATGCAGTGAATG
ATTTCAATTCCATATTGGTGCAATTAGAAG	CCTTGCTGTAGGAAACATCGGGAATACCCTTCTTT
ATTTCAATTCCATATTGGTGCAATTAGAAG	CAACAAAGGGTGTTGCTGCGTAGGTTGTTGGTGAT
ATTTCAATTCCATATTGGTGCAATTAGAAG	ATAAAGACTAACTTCAGTAAGAGTAATCAGGTTTTAA
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTGGGCTTGGTGGTTCAACGTCGCCTCGCACACTTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GTATCCGACAGGACAGATTTACAAAAGCACTGATAG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GTGTGGTTGCTTGCTTGTGCATAGCTAATAGGTGTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	GCTGACTGTGTACTGCACACGATTGCGGCGAAATA
ATTTCAATTCCATATTGGTGCAATTAGAAG	AAATAATAAAGCTTCGTTGCCTTGAACGTATATCAT
ATTTCAATTCCATATTGGTGCAATTAGAAG	AAAGCGGGGTGTGCTGCCTTGACTGATCGGCGGGA
ATTTCAATTCCATATTGGTGCAATTAGAAG	AGCCAGCTCTTGAATTGCAAATATTTTTGTTTCACTTA
ATTTCAATTCCATATTGGTGCAATTAGAAG	CAGAACTAATTAAGCATCGTTGCCTTGAACGGCTATCTTT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TGCCTCGCTCGGTTTGTCGCGCCCTGCCTCCGCTATAC
ATTTCAATTCCATATTGGTGCAATTAGAAG	TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTACGAACAGACACAACGCAAAACAAAGATGATATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	TAAACCGTTTACGCTGTAAACAGCACAGCTTTTTCCATC
ATTTCAATTCCATATTGGTGCAATTAGAAG	TCAAACCTCGCAAGGGTATTATCCGTAGTTGTCGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTACGAACAGACACAACGCAAAACAAAGATGATATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG	TTCTCCCCAACAAGGTTAAAGAACGATATGCCTGT
ATTTCAATTCCATATTGGTGCAATTAGAAG	TGGAAATCTCAACAAGAGCGTTATTGTATATCTTA
ATTTCAATTCCATATTGGTGCAATTAGAAG	CATAGGAAAAACCGATTACGAAGTGCTTTGTGATTG
ATTTCAATTCCATATTGGTGCAATTAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_007514.1\|WP_011362988.1\|2510127_2510622_-\|ferritin	unknown	unknown	gnl\|CDD\|153111
NC_007514.1\|WP_011362997.1\|2525144_2526851_+\|ribonuclease-E/G	unknown	unknown	gnl\|CDD\|273254
NC_007514.1\|WP_011362982.1\|2505099_2506419_-\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274529
NC_007514.1\|WP_011362981.1\|2503978_2505103_-\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NC_007514.1\|WP_011362995.1\|2522991_2523429_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NC_007514.1\|WP_011362980.1\|2502998_2503910_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372475
NC_007514.1\|WP_011362994.1\|2522308_2522992_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_007514.1\|WP_011361140.1\|2513292_2514528_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NC_007514.1\|WP_041466848.1\|2514741_2515215_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|133478
NC_007514.1\|WP_011362987.1\|2509541_2510042_-\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|224508
NC_007514.1\|WP_011362993.1\|2521258_2522191_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|376672
NC_007514.1\|WP_011362986.1\|2508624_2509428_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_007514.1\|WP_011362992.1\|2518999_2521015_-\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
NC_007514.1\|WP_011362985.1\|2508239_2508590_+\|hypothetical-protein	unknown	unknown	unknown
NC_007514.1\|WP_011362983.1\|2506773_2507607_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_007514.1\|WP_011362989.1\|2510733_2511399_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|237297
NC_007514.1\|WP_041466849.1\|2523441_2524725_-\|DUF1015-domain-containing-protein	unknown	unknown	gnl\|CDD\|377633
NC_007514.1\|WP_041466585.1\|2507621_2508212_+\|3-deoxy-D-manno-octulosonate-8-phosphate-phosphatase	unknown	unknown	gnl\|CDD\|319769
NC_007514.1\|WP_011362991.1\|2515295_2518592_-\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
NC_007514.1\|WP_156772598.1\|2524911_2525091_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_007514.1\|WP_011362988.1\|2510127_2510622_-\|ferritin	gnl\|CDD\|153111	cd01052, DPSL, DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of iron in the ferric form. Many of the conserved residues of a diiron center are present in this domain.	1.29463e-67
NC_007514.1\|WP_011362997.1\|2525144_2526851_+\|ribonuclease-E/G	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	1.18002e-179
NC_007514.1\|WP_011361140.1\|2513292_2514528_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.23932e-96
NC_007514.1\|WP_011362981.1\|2503978_2505103_-\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	8.64122e-79
NC_007514.1\|WP_011362995.1\|2522991_2523429_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	4.72357e-44
NC_007514.1\|WP_011362980.1\|2502998_2503910_-\|hypothetical-protein	gnl\|CDD\|372475	pfam13100, OstA_2, OstA-like protein. This is a family of OstA-like proteins that are related to pfam03968.	0.00111635
NC_007514.1\|WP_011362994.1\|2522308_2522992_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	1.29222e-45
NC_007514.1\|WP_011362982.1\|2505099_2506419_-\|AAA-domain-containing-protein	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_007514.1\|WP_041466848.1\|2514741_2515215_-\|transcriptional-repressor	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	1.8583e-31
NC_007514.1\|WP_011362987.1\|2509541_2510042_-\|rubrerythrin-family-protein	gnl\|CDD\|224508	COG1592, COG1592, Rubrerythrin [Energy production and conversion].	1.15746e-52
NC_007514.1\|WP_011362993.1\|2521258_2522191_-\|NYN-domain-containing-protein	gnl\|CDD\|376672	pfam01936, NYN, NYN domain. These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs.	7.13921e-15
NC_007514.1\|WP_011362986.1\|2508624_2509428_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.90284e-129
NC_007514.1\|WP_011362992.1\|2518999_2521015_-\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_007514.1\|WP_011362983.1\|2506773_2507607_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	1.64664e-162
NC_007514.1\|WP_011362989.1\|2510733_2511399_-\|peroxiredoxin	gnl\|CDD\|237297	PRK13189, PRK13189, peroxiredoxin; Provisional.	3.39291e-150
NC_007514.1\|WP_041466849.1\|2523441_2524725_-\|DUF1015-domain-containing-protein	gnl\|CDD\|377633	pfam06245, DUF1015, Protein of unknown function (DUF1015). Family of proteins with unknown function found in archaea and bacteria.	2.47493e-140
NC_007514.1\|WP_041466585.1\|2507621_2508212_+\|3-deoxy-D-manno-octulosonate-8-phosphate-phosphatase	gnl\|CDD\|319769	cd01630, HAD_KDO-like, haloacid dehalogenase-like (HAD) hydrolase, similar to Escherichia coli 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) phosphatase KdsC, and rainbow trout N-acylneuraminate cytidylyltransferase. KDO 8-P phosphatase catalyzes the hydrolysis of KDO 8-P to KDO (3-deoxy-D-manno-octulosonate) and inorganic phosphate and is the last enzyme in the KDO biosynthetic pathway. KDO is an 8-carbon sugar that links the lipid A and polysaccharide moieties of the lipopolysaccharide region in Gram-negative bacteria. An interruption in KDO biosynthesis leads to the accumulation of lipid A precursors and subsequent arrest in cell growth. The KDO biosynthesis pathway involves five sequential enzymatic reactions. This family also includes rainbow trout CMP-sialic acid synthetase which effectively converts both deaminoneuraminic acid (KDN, 2-keto-3-deoxy-D-glycero-D-galacto-nononic acid) and N-acetylneuraminic acid (Neu5Ac) to CMP-KDN and CMP-Neu5Ac, respectively. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.33904e-43
NC_007514.1\|WP_011362991.1\|2515295_2518592_-\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0

>NC_007514.1|WP_011362989.1|2510733_2511399_-|peroxiredoxin
MHDDELYYDISMPLLGDDFPEMEVQTTHGVMNIPGDLKGSWFVLFSHPADFTPVCTTEFVAFQERIAEFDKLGCKLIGMSVDQVFSHIKWIEWIKDTLNIEITFPIVAANDRIANKLGMLHPGKGSNTVRAVFVCDPNGKVRLVLYYPQEIGRNMAEILRAVTALQISDNNKVAIPADWPNNSLIKDEVIIPPAKDVAEAQKRKNMGGCYDWWFCHKPLDK
>NC_007514.1|WP_011362988.1|2510127_2510622_-|ferritin
MGTRGREIVGSHLERVLELLNKAFADEWLAYYQYWVGAKIVNGPMKDAVIAELLQHAADELRHADMLSTRIIQLGGKPLISPQDWFTWSNCGYDAPENPFVQRILEQNISGEQCAISTYSAIIEEIGLKDPITYNIAVQIMQDEVEHEEDLQSLFEDLSLFVKK
>NC_007514.1|WP_011362987.1|2509541_2510042_-|rubrerythrin-family-protein
MPTTHENLKNAFAGESQAFMKYTAFAKKAEKDGFANIAKLFRTTAEAEKIHAEGHLSADDAIQTTAANLETAIGGETYEHNEMYPPMYEQAVAEGHKAKRMFGFAVEAEQVHAALYRKALDAVQNGQDLSESNIWLCPVCGHIELGNPPANCPICNVKASVYVQVS
>NC_007514.1|WP_011362986.1|2508624_2509428_+|nucleoside-triphosphate-pyrophosphohydrolase
MPATIDELKAAILKEHERSVPEGFQRVLDLVRVLRQECPWDRKQTAESLAHLLLEESYELVHAIDQQETDELKKEIGDLFMHLCFQVQLADEQGHFSFNEVFDALCKKLIHRHPHVFGSTEATTEKEVLQNWEKLKLSEGRKSLLDGVPSAMSELLRAYRVQKKVAGVGFDWQSDEGVIDKIVEEIQELKQAATQNEREEEFGDLLFTLVNYSRFIGTNPEDALRKATNKFMQRFRTVELLVAESERPWQEFTPEELDTLWQQAKEK
>NC_007514.1|WP_011362985.1|2508239_2508590_+|hypothetical-protein
MKKWQQFLQDGSGVFSSTRLAFLLWVVGTLVVWIFGCIEVINAHATLDMAGKIKAIQFPVIPENVMLIIGALMTGKVWQSFSENSADKSTTSLTVQQTSSAQQGTSENVASETVAK
>NC_007514.1|WP_041466585.1|2507621_2508212_+|3-deoxy-D-manno-octulosonate-8-phosphate-phosphatase
MSGFQFFGNDPSQADPSSRIDQALKGIQALLFPVDGILNGSKITFDHSGNELCTISVRDAIAIKEAVKLGLRIGVLSSRNAEGYRPMLEALGVQDLYLNGEHVFYSYDAFRHRHSLSNEECAYIGDDIGDIDVLAKVGLPATSIDGADYLRNRVAYISGFEGGKGCIRELVEEILTRQGKWPYIERPDEEDETAEE
>NC_007514.1|WP_011362983.1|2506773_2507607_+|3-deoxy-8-phosphooctulonate-synthase
MQQKFSIGSITVPDCELPLLIAGPCVIESRAMAFEIADELQRISQAEGVRFIFKGSYRKANRTSAASFTGIGDEDALTILADIRQKYGMPVLTDVHESAEVALASRYVDVLQIPAFLCRQTELLVAAGESGLAVNIKKGQFMAPDDMRLAAAKVARTGNNRILLTERGSSFGYHNLVVDFRGIAKMAESGYPVLYDATHSLQLPGAGQGMSGGEREYMLPLARAAVATGVDGLFCEIHPNPEKALSDAATQIPLAEFGVIIHQLLHLYRCVQPLLSH
>NC_007514.1|WP_011362982.1|2505099_2506419_-|AAA-domain-containing-protein
MSTTDTRQRLEEIEKQLASLTEERNTIRARWESEKELLQLSRDLQSQIEQLRVQAEEFERQGDYGKVAEIRYGKIAQIERDLAENRKKIEEKKLGGNLIMKEEIDAEDIADIVSRWTGIPLSKMLQTERQKLLLIEDELHKRVIGQHEAVTAVSEAVKRSRAGMGDEKRPIGSFIFLGPTGVGKTELARTLADYLFDDEDAMIRIDMSEYMESHNVSRLVGAPPGYVGYEEGGQLTEAVRRKPFSVVLLDEIEKAHPDVFNILLQILDDGRLTDSKGRTVNFKNCIIIMTSNIGAQLIQSELEQLEGAKRDEVLAGLQEKLFQLLKQKVRPEFLNRIDEVILFTPLTRDDLQKIVLIQFEHIQEAALRQHITLTISDEAIVWLAKTGFDPAFGARPLKRVMQRKITNKLSELILSGAVQEGESVAVECVGDELVVRKNA
>NC_007514.1|WP_011362981.1|2503978_2505103_-|glycoside-hydrolase-family-3-protein
MRRRLRMVALVLLWLCMAAPLAMAAASPDSLSIKMGQMVMVGFRGTSLAESPQIVAAIQKRHIGGVVLFDYDVPFASPTRNITSPSQLARLTQELQEHSAIPLFIAIDQEGGKVNRLKASRGFPVTISAAKLGALNQPDSTRSAARQIAKTLRAMHVNMNFAPVADLNRNPNNPVIGKVERSFSADAARATTHIRLTADTYRAEGIIPTLKHFPGHGSSTTDTHLDFTDVSNSWSKEELEPYRSLIADGYEDAIMTAHVFNATLDPTYPATLSKPTLDGVLRQQLGFKGVIISDDMQMGAIAAHYGLESAIRLALNAGVDILLFGNNTAYDEAIAEKALAIIHALIERGEIQPSRIEESYRRIMALKQRYGVVR
>NC_007514.1|WP_011362980.1|2502998_2503910_-|hypothetical-protein
MNKKTWQGIFLLVLFVIAPNFLQNSIVRAEKKKIILKQAEIVEGGENAKGSFRRLSGSVELSDGSITLRCNRATEYEASRSIVLEGKVMIADQRAEVYADGGTYYPDKEIGDLNGKVRLRTLDGALVAIANTAHLNHAANQITLYGNVVAWHEAQQVSGNEMVITLRASSGKQEHQVEKVDIRGNAFLAAKDTLSKPIAVYNQFSARRMTMHFNEASLLQNALLQGQSESLWHLYSEENRPSAIHYSSGNTMQLAFREGALYTMKVSGHCEGKHYPASFWENKKINLPFFVWREKEYPFPKKK
>NC_007514.1|WP_011361140.1|2513292_2514528_-|ISL3-family-transposase
MKDTVLFQQALCLPMPWFVKSSAFDIEQKRLTIQLDFQKGSTFSCPTCGQHDLKAYDTAEKQWRHLNFFQHECYLTARVPRISCPTCGVKAITDLPWARRDSGFTLLFEAMIIALVPSMPCKTIANYVGEHDSRIWRIIHYYLDEALEQQDLSAVTKVGLDETASKRGHNYVTSFVDLESSKVLFVTEGKDATTVEKFHKHLLAHKGKAENIKEICCDMSPAFIKGVTTNFPETHITFDKFHIIQVLTKAVDEVRREEQKERPELAKSRYLWLKNQVHLNQSQQVKLEKLQLKKLNLKTARAYQVKLNFQEFFKQAPAYAQSFLNQWYYSASHSRLEPIKEAARTIKRHWYGILRWFTSNITNGKLEGLNSMIQAAKARARGYRTTNNLIAMIYFIGSKFEFTLPALTHSK
>NC_007514.1|WP_041466848.1|2514741_2515215_-|transcriptional-repressor
MQSTGANNNLEQAEKLFRQLMKEQGFRCTNERIAVLHELYNAESHLDADELYVLLKQKHVAISRATVYHTLHLLFKFRLISKIDLGHKHAHYEKAYGVTNHLHMVCSICGRVTEVDDNRIAPQLQEICRHNGLNLEHFSLQLVGTCIKHDSPIPTNN
>NC_007514.1|WP_011362991.1|2515295_2518592_-|maltose-alpha-D-glucosyltransferase
MYQPEPLWYKDAIIYEAHVKTFYDSDNDGIGDFQGLRQKLGYLQSLGITAIWLLPFYPSPLRDDGYDIADYMTVNPDYGTMDDFRAFLEEAHSLGLKVITELVVNHTSDQHAWFQRARHAPKDSPERNFYVWSDDPNKYSETRIIFQDFEASNWTYDSVAGQYYWHRFYHHQPDLNFENPAVHAALLHVLDFWLGMGVDGLRLDAVPYLYEEEGTNCENLPRTYQYLRDLRSYIDEKYPNRMLLAEANQWPEDSAAYLGNGDMCHMNFHFPLMPRMYMALATEDRFPILDILEQTPEIPESCQWASFLRNHDELTLEMVTDEERDYMRRVYANDPRARINLGIRRRLAPLMSNDRRKIELMNIMLLSLPGTPVLYYGDEIGMGDNFYLGDRDGVRTPMQWNADRNAGFSRANPQRLQLPVIIDPEYHYEAVNVEVQESNIHSLLWWMRQTISTAHRHKAFSRGTIEFLPVKNSKVLSFIRQYEDETMLCVINLSKNAQAVTVDLSRFNGYTPEEVFSLNRFPKIRSTPYMLALGAYGYFWLKLIKEEKEVDRHALLDGSVVSVNRWQSLFIGKNREKLETAVFSSYYMAARWFGGKARTIIRISITDTIPIANVANTKLLVTEVRYSSGENENYQLPVTFVPLANLQPSDEYFSKQVIARITVGDEEGYLCDATFTPAFLQELYSVATAKGSWQGKQGVVNGSSAPKLAAFLANVADAAPELMGAEQSNTSIRYADNLCLKLYRRIESGVSPEVEMCSALSERTSFTNLPTYLGTVNYSRSRSSRCSIGILQTYVPNQGDAWQLSLDQARRYFDAIHSALPNALAMPALPALSGNPAPLPELMQELIGGHYLGMIEKLAERTAEMHLALATLESDPAFAPEAFTSLYQRSIYQAMCEQVKRSVILIRELLPSLNGEQQTLATQFVQKQKQILQQFDPIRTEKIEALKIRIHGDYHLGQVLFTGKDFTIIDFEGEPARPLSERKIKRSVFRDVAGMLRSFDYAAFSALRQIAPTLRPDELPMLDAWAERWSFYVGQHFINRYFEATNGSSIVPVEAPQREHLLRGYLMNKAIYELNYELNNRPDWAAIPLRGILKLIEQ
>NC_007514.1|WP_011362992.1|2518999_2521015_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MTLHSTFEHTLPLFCQQAFDGRQRVIIENISPEIDGGSHPAKAVAGELVEVEADIFVDGADTISAMLCARPMGSSEWQQSAMQPLVNDRWQGAFRVGEAGVFEYTITAWVDHFQTWRKGFIKKVDAGQNVSLELQIGTIHLEKAALRATKSDAELLHVLVQRISTADDAEAIALITSDALAQVMERNPDTSLATTYQKVLRVTVEQTKAGCSAWYEFFPRSWSEIPGKHGTFNECLRLLPLIAGMGFDVIYLPPIHPIGYAKRKGRNNSLVALPDDPGSCWAIGNSDGGHKAVHPELGTLEDFTAFVQAAEAQGISVALDIAFQCSPDHPYVQEHPQWFTWRPDGTVQFAENPPKRYEDILPINFENDDWQNLWIELRSIFLFWVERGVKIFRVDNPHTKAFPFWEWAIRTIRAEHPDTVFLAEAFTRPKLMARLAKIGYSQSYSYFTWRNTKHELQEYVTELTSEPLKHVMRANFWPNTPDILHDEFHNGEREKFIIRLVLAATLSANYGMYGPAYELCEHVPIAHGKEEYLDSEKYEIKQWDMDRPGNIRAEITAINRIRKENPALQQTADISFLHIDASPGNEHNMLMAYVKRSENDANIILVVVNLDPITTQRGWLRFPLEQFGLTHLHRFHVEDLLSGQCHTWHGEWNYVELNPHVMPAHIFKISL
>NC_007514.1|WP_011362993.1|2521258_2522191_-|NYN-domain-containing-protein
MVNNRDLSLTRIGVFYDGNYFLHISNYYNYFHERKARISISGLHHFVRNYIAQQEGSDEQLCQIVDAHYFRGRLNAYEAAQEGNALFYDRLFDDILSSEGVTTHYLPVKTSQTGVRYEKGIDVWLALEAFEQAFYKRFDVLVLIASDGDYVPLIRKLNTLGTRVMVLSWDFEYTSDNGKQMTTRTSQDLLEEVTYPVAMHEIIDNRIKKNEPLINNLFVPPSKKRIFEKPLDREYDESEQQTGTILALKDGYGFIKFPPNNLFFHYSNLNGVDFNDLKVDDAVQFVIGKNDRGDEVAKDIVLVAEESAIS
>NC_007514.1|WP_011362994.1|2522308_2522992_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MSLLAIECTHEALSVALEHHGTIREVQSSEWKKAAESIVPLVQQVVAESDATFQALSAIVISAGPGSFTALRIGMAAAKGMAYALDIPLLPVPTLPAMAASLQASEDAVVAVIQARRGEYYYALYHATDVAANRWHNDVQRGSADVVVDAALMAARVGSVVVVGRKLLDLQQPLAEANIALLEADCFSARSLLAAAERQRTAKQMVPLEQIVPDYQQAFVPTMGKMG
>NC_007514.1|WP_011362995.1|2522991_2523429_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MREEFFSTSESETLLLAERFAAALPPRSVVALLGTLGAGKTLFMRGICRAFHCEAQLSSPTFSLMNIYEGELNGQAVSVHHFDLYRLESERELEAIGFDDYLTSADLSVVEWADLFPHYKGRYTATVLLEYAGERERRIIIERGN
>NC_007514.1|WP_041466849.1|2523441_2524725_-|DUF1015-domain-containing-protein
MPEIKPFSGVLYHPELLKQADKLICPPYDIISSAQQQSLYHRSPLNAIRLELPLEENPYGTAAARLTQWLQSGELQRDSEPAIYPYFQTFEDLEGKSHVRHGFFTAMRLHEFSENKVLRHEKTLSAPKADRLNLFRATRTNISPIYGLYADEHRTLDQLMVAYSETHEPLLDANVQGIRNRLWRITEPTLLEQFRQTLLNRQVYIADGHHRYDTGVTYRNERMAANPTHNGNEPYNFIFSCLTNIYDEGLIVFPLHRVLHSVADFNAERLKEQLAEFFTITDLNSQDELKAYLAASTSSFSYGVVTSGALYGMTLKGEAAPLLDAQCAHCPEAVAQLGVVVLHQVIFHKLLGISHEAMEAQRNLLYVTDVNEVFHAVACRTAQAGFVVKPTTVQQVLDVSESGEVMPQKSTFFYPKLMTGLLFNPLD
>NC_007514.1|WP_156772598.1|2524911_2525091_+|hypothetical-protein
MAPFLQLPLAIQPHAKAPKALRYKPHYPLFSEWRGIKAGKEVGEFNKNVTDAAHHFFFF
>NC_007514.1|WP_011362997.1|2525144_2526851_+|ribonuclease-E/G
MKKSSTKQLLMNKTGDEIQVALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVGTTNEDYRALIEDDDDDDAIIGDDIESDEATGQNDSEFDEASDGETTVSAPKTVARSNSKKPSSGEQSGEKPQTYTQMIAGKLKPNDSILVQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERSRLKKLVRSILPEGFGAIIRTVAEDQEEALLKQDLEKLLTKWKQIEEKLQDATPPQLIFKEDTIISSVLRDSLTSDVSEIVANSPAIYKETLNYIEWAAPEMVKNVALYQGKLPLFEGYAIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREVVRQLRLRDIGGIIVVDFIDMLDPKNAKKIYDAVKTELRNDRAKSNILPMSDFGLMQITRERIRPSLMQRMGDQCPACGGTGIVQARFTTINQIERWLRKYALQHPLRFQQLDLYVSPTVLEPLQNSDMKTEMKWFLQHMLFVTVKGDESLRSDDFRFYNRKNNKDITAEYGEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	HQ317387	Sulfitobacter phage phiCB2047-B genomic sequence	69888-69920	2	0.939
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MT774387	CrAssphage cr111_1, complete genome	89041-89073	3	0.909
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	7687-7719	4	0.879
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MH791414	UNVERIFIED: Aeromonas phage Aswh_1, complete genome	167443-167475	4	0.879
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MK770119	Pantoea phage vB_PagS_AAS21, complete genome	68935-68967	5	0.848
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	KR560069	Stenotrophomonas phage IME-SM1, complete genome	3167-3199	5	0.848
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MN098328	Stenotrophomonas phage Mendera, complete genome	81929-81961	5	0.848
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MN095772	Stenotrophomonas phage Moby, complete genome	81649-81681	5	0.848
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MK580972	Stenotrophomonas phage YB07, complete genome	91499-91531	5	0.848
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	NZ_CP040853	Lactobacillus murinus strain V10 plasmid unnamed, complete sequence	18681-18713	5	0.848
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MK433266	Streptomyces phage Shawty, complete genome	39930-39962	6	0.818
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MN908685	Microbacterium phage PauloDiaboli, complete genome	88937-88969	6	0.818
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	NC_021529	Vibrio phage nt-1, complete genome	101418-101450	6	0.818
NC_007514_1	1.15\|1340611\|32\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340611-1340642	32	MH617201	Microviridae sp. isolate ctca97, complete genome	1839-1870	7	0.781
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MK557849	Caudovirales GX15bay, complete genome	5765-5797	7	0.788
NC_007514_1	1.48\|1342792\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342792-1342824	33	MK450426	Streptomyces phage Euratis, complete genome	40773-40805	7	0.788
NC_007514_1	1.1\|1339681\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1339681-1339714	34	MH616746	Microviridae sp. isolate ctbc737, complete genome	498-531	8	0.765
NC_007514_1	1.14\|1340546\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340546-1340578	33	MF417959	Uncultured Caudovirales phage clone 2F_5, partial genome	9753-9785	8	0.758
NC_007514_1	1.14\|1340546\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340546-1340578	33	KJ608189	UNVERIFIED: Leuconostoc phage LLC-1, partial genome	25227-25259	8	0.758
NC_007514_1	1.29\|1341533\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1341533-1341566	34	NZ_KT307967	Yersinia pseudotuberculosis strain IP2666 plasmid pYV2666, complete sequence	33427-33460	8	0.765
NC_007514_1	1.29\|1341533\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1341533-1341566	34	NZ_CP032567	Yersinia pseudotuberculosis strain IP2666pIB1 plasmid pIB1, complete sequence	33427-33460	8	0.765
NC_007514_1	1.29\|1341533\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1341533-1341566	34	NZ_CP033716	Yersinia pseudotuberculosis strain FDAARGOS_579 plasmid unnamed, complete sequence	3244-3277	8	0.765
NC_007514_1	1.55\|1343257\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1343257-1343290	34	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	212039-212072	8	0.765
NC_007514_1	1.1\|1339681\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1339681-1339714	34	NZ_CP046031	Staphylococcus chromogenes strain 1401 plasmid unnamed3, complete sequence	886-919	9	0.735
NC_007514_1	1.21\|1341005\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1341005-1341037	33	NZ_CP009620	Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence	119237-119269	9	0.727
NC_007514_1	1.55\|1343257\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1343257-1343290	34	KX011028	Staphylococcus phage pSco-10, complete genome	88520-88553	9	0.735
NC_007514_1	1.13\|1340480\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340480-1340513	34	NC_031070	Bacillus phage Nemo, complete genome	122669-122702	10	0.706
NC_007514_1	1.13\|1340480\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340480-1340513	34	MT584805	Bacillus phage Tomato, complete genome	124695-124728	10	0.706
NC_007514_1	1.13\|1340480\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340480-1340513	34	KX156152	Bacillus phage Smudge, complete genome	121744-121777	10	0.706
NC_007514_1	1.13\|1340480\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340480-1340513	34	MH638311	Bacillus phage OmnioDeoPrimus, complete genome	121585-121618	10	0.706
NC_007514_1	1.13\|1340480\|34\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340480-1340513	34	MF288918	Bacillus phage Bubs, complete genome	122707-122740	10	0.706
NC_007514_1	1.15\|1340611\|32\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1340611-1340642	32	MW147367	Synechococcus phage S-H9-2, complete genome	23861-23892	10	0.688
NC_007514_1	1.35\|1341930\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1341930-1341962	33	MN693483	Marine virus AFVG_25M516, complete genome	8113-8145	10	0.697
NC_007514_1	1.40\|1342266\|33\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	1342266-1342298	33	NZ_CP030365	Salinibacter ruber strain M1 plasmid pSR116, complete sequence	26222-26254	10	0.697
NC_007514_2	2.8\|2512188\|35\|NC_007514\|PILER-CR,CRISPRCasFinder,CRT	2512188-2512222	35	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	174210-174244	10	0.714

1. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to HQ317387 (Sulfitobacter phage phiCB2047-B genomic sequence) position: , mismatch: 2, identity: 0.939

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taaaagtcgggtgctctaaccaactgagctaac	Protospacer
** *** **************************

2. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MT774387 (CrAssphage cr111_1, complete genome) position: , mismatch: 3, identity: 0.909

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
tataagccgagtgctctaaccaactgagctaag	Protospacer
****** **.**********************

3. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 4, identity: 0.879

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
tatcagacgggtactctaaccaactgagctata	Protospacer
*** ********.******************

4. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MH791414 (UNVERIFIED: Aeromonas phage Aswh_1, complete genome) position: , mismatch: 4, identity: 0.879

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taacaggcgggcgctctaaccaactgagctaac	Protospacer
**  **.****.*********************

5. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MK770119 (Pantoea phage vB_PagS_AAS21, complete genome) position: , mismatch: 5, identity: 0.848

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
tttcagacccgtgctctaaccaactgagctacc	Protospacer
* * ****  ********************* *

6. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to KR560069 (Stenotrophomonas phage IME-SM1, complete genome) position: , mismatch: 5, identity: 0.848

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taacaggcgcgtgctctaaccaactgagctaat	Protospacer
**  **.** **********************.

7. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MN098328 (Stenotrophomonas phage Mendera, complete genome) position: , mismatch: 5, identity: 0.848

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taacaggcgcgtgctctaaccaactgagctaat	Protospacer
**  **.** **********************.

8. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MN095772 (Stenotrophomonas phage Moby, complete genome) position: , mismatch: 5, identity: 0.848

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taacaggcgcgtgctctaaccaactgagctaat	Protospacer
**  **.** **********************.

9. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MK580972 (Stenotrophomonas phage YB07, complete genome) position: , mismatch: 5, identity: 0.848

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taacaggcgcgtgctctaaccaactgagctaat	Protospacer
**  **.** **********************.

10. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040853 (Lactobacillus murinus strain V10 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.848

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taacagtcaggtgctctaaccaactgagctaat	Protospacer
**  ** *.***********************.

11. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MK433266 (Streptomyces phage Shawty, complete genome) position: , mismatch: 6, identity: 0.818

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
tacgaaacggatgctctaaccaactgagctagg	Protospacer
**..*.****.********************.

12. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MN908685 (Microbacterium phage PauloDiaboli, complete genome) position: , mismatch: 6, identity: 0.818

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
taagaggcggttgctctaaccaactgagctata	Protospacer
** .**.*** ********************

13. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NC_021529 (Vibrio phage nt-1, complete genome) position: , mismatch: 6, identity: 0.818

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
ttttgggccggcgctctaaccaactgagctaac	Protospacer
* * .*.* **.*********************

14. spacer 1.15|1340611|32|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MH617201 (Microviridae sp. isolate ctca97, complete genome) position: , mismatch: 7, identity: 0.781

----ctaaagtcaacgatagaagaaacaaaaatact	CRISPR spacer
actgccaa----aacaaaagaagaaacaaaaatact	Protospacer
    *.**    ***.* ******************

15. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MK557849 (Caudovirales GX15bay, complete genome) position: , mismatch: 7, identity: 0.788

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
cgacagtccggtgctctaaccaactgagctacc	Protospacer
..  ** * ********************** *

16. spacer 1.48|1342792|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MK450426 (Streptomyces phage Euratis, complete genome) position: , mismatch: 7, identity: 0.788

tataagacgggtgctctaaccaactgagctaac	CRISPR spacer
tacgaaacaggcgctctaaccaactgagctagg	Protospacer
**..*.**.**.*******************.

17. spacer 1.1|1339681|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MH616746 (Microviridae sp. isolate ctbc737, complete genome) position: , mismatch: 8, identity: 0.765

ccaaaattctttaaatgttcttaagggtgattct	CRISPR spacer
gcagaattctttgaatgttcttaagacggatggt	Protospacer
 **.********.************.  ***  *

18. spacer 1.14|1340546|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MF417959 (Uncultured Caudovirales phage clone 2F_5, partial genome) position: , mismatch: 8, identity: 0.758

taaagttaaagtaaagcgtgagattgaaggcat	CRISPR spacer
taaagttaaaataaagtgtgagatgtgagaaag	Protospacer
**********.*****.*******  .**. *

19. spacer 1.14|1340546|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to KJ608189 (UNVERIFIED: Leuconostoc phage LLC-1, partial genome) position: , mismatch: 8, identity: 0.758

taaagttaaagtaaagcgtgagattgaaggcat	CRISPR spacer
cgaactactagtaaagcgtgagatagaacgcat	Protospacer
..** *   *************** *** ****

20. spacer 1.29|1341533|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT307967 (Yersinia pseudotuberculosis strain IP2666 plasmid pYV2666, complete sequence) position: , mismatch: 8, identity: 0.765

ataagaatcaagagtgtgagatttccgtttatca	CRISPR spacer
atatgctgtcagagcgtgggatttccgtttatca	Protospacer
*** *   . ****.***.***************

21. spacer 1.29|1341533|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032567 (Yersinia pseudotuberculosis strain IP2666pIB1 plasmid pIB1, complete sequence) position: , mismatch: 8, identity: 0.765

ataagaatcaagagtgtgagatttccgtttatca	CRISPR spacer
atatgctgtcagagcgtgggatttccgtttatca	Protospacer
*** *   . ****.***.***************

22. spacer 1.29|1341533|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033716 (Yersinia pseudotuberculosis strain FDAARGOS_579 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ataagaatcaagagtgtgagatttccgtttatca	CRISPR spacer
atatgctgtcagagcgtgggatttccgtttatca	Protospacer
*** *   . ****.***.***************

23. spacer 1.55|1343257|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 8, identity: 0.765

aggtaaa---gcagatgaagagtttgatgcaaaaatt	CRISPR spacer
---tgaatctacagatgaagagtttgataaaaaaact	Protospacer
   *.**   .*****************. *****.*

24. spacer 1.1|1339681|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046031 (Staphylococcus chromogenes strain 1401 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

ccaaaattctttaaatgttcttaagggtgattct	CRISPR spacer
ccaaaatgctttaaatgttcttaaaaccccttta	Protospacer
******* ****************.. .  **.

25. spacer 1.21|1341005|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009620 (Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence) position: , mismatch: 9, identity: 0.727

tttgatgcagtagaatggtttggcttttgggta	CRISPR spacer
tgttttgcagtcgaacggtttggcttttgacgt	Protospacer
* *  ****** ***.*************.

26. spacer 1.55|1343257|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to KX011028 (Staphylococcus phage pSco-10, complete genome) position: , mismatch: 9, identity: 0.735

aggtaaagcagatgaagagtttgatgcaaaaatt	CRISPR spacer
aggtaaagaagatgaagaggttgagaaatcagct	Protospacer
******** ********** **** . *  *..*

27. spacer 1.13|1340480|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NC_031070 (Bacillus phage Nemo, complete genome) position: , mismatch: 10, identity: 0.706

tcattgacattgaagaggagggtaaacaatgaga	CRISPR spacer
ggattgacattgaggaggaaggtaaatgacacca	Protospacer
  ***********.*****.******..*..  *

28. spacer 1.13|1340480|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MT584805 (Bacillus phage Tomato, complete genome) position: , mismatch: 10, identity: 0.706

tcattgacattgaagaggagggtaaacaatgaga	CRISPR spacer
ggattgacattgaggaggaaggtaaatgacacca	Protospacer
  ***********.*****.******..*..  *

29. spacer 1.13|1340480|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to KX156152 (Bacillus phage Smudge, complete genome) position: , mismatch: 10, identity: 0.706

tcattgacattgaagaggagggtaaacaatgaga	CRISPR spacer
ggattgacattgaggaggaaggtaaatgacacca	Protospacer
  ***********.*****.******..*..  *

30. spacer 1.13|1340480|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MH638311 (Bacillus phage OmnioDeoPrimus, complete genome) position: , mismatch: 10, identity: 0.706

tcattgacattgaagaggagggtaaacaatgaga	CRISPR spacer
ggattgacattgaggaggaaggtaaatgacacca	Protospacer
  ***********.*****.******..*..  *

31. spacer 1.13|1340480|34|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MF288918 (Bacillus phage Bubs, complete genome) position: , mismatch: 10, identity: 0.706

tcattgacattgaagaggagggtaaacaatgaga	CRISPR spacer
ggattgacattgaggaggaaggtaaatgacacca	Protospacer
  ***********.*****.******..*..  *

32. spacer 1.15|1340611|32|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MW147367 (Synechococcus phage S-H9-2, complete genome) position: , mismatch: 10, identity: 0.688

ctaaagtcaacgatagaagaaacaaaaatact	CRISPR spacer
ttaaaggcaacaatagaagaaacagtcagtgg	Protospacer
.***** ****.************.  *

33. spacer 1.35|1341930|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to MN693483 (Marine virus AFVG_25M516, complete genome) position: , mismatch: 10, identity: 0.697

ctagcactatcaaatataccacctgctcctccc	CRISPR spacer
ttagcaatatcaaatgtaccacctgatataatt	Protospacer
.***** ********.********* * .  ..

34. spacer 1.40|1342266|33|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030365 (Salinibacter ruber strain M1 plasmid pSR116, complete sequence) position: , mismatch: 10, identity: 0.697

ggagctgctcgaaaaggatttggagcgctttga	CRISPR spacer
ggagctgctcgaaaaggaatttgaagaggcgaa	Protospacer
****************** ** **. .  . .*

35. spacer 2.8|2512188|35|NC_007514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

gctgactgtgtactgcacacgattgcggcgaaata	CRISPR spacer
cttgggaatgtactgcacgcgattgaggcgaaagg	Protospacer
 .**.  .**********.****** ******* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

595912 : 605678

Enterobacteria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011361556.1\|595912_596824_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	8.4e-20	29.7
WP_011361557.1\|596823_598278_-	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	1.3e-19	27.3
WP_011361558.1\|598396_599284_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.9e-104	63.2
WP_041466424.1\|599338_600208_+	DNA-binding protein	Q9JMN3	Wolbachia_phage	1.0e-19	39.3
WP_011361560.1\|600246_600840_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-45	50.3
WP_011361561.1\|600847_601723_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.0e-38	39.0
WP_011361562.1\|601735_602785_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.2e-88	49.8
WP_011361563.1\|602923_603901_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	6.4e-42	34.1
WP_011361564.1\|604265_605678_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.2e-60	32.1

DBSCAN-SWA_2

1005153 : 1103481

Bacillus_phage(30.0%)

protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041466454.1\|1005153_1007253_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	4.5e-69	29.2
WP_011361773.1\|1007314_1008700_-	argininosuccinate lyase	NA	NA	NA	NA
WP_011361774.1\|1008961_1009555_-	adenylyl-sulfate kinase	A0A2K9L0F0	Tupanvirus	3.1e-23	36.5
WP_011361775.1\|1009650_1011771_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011361776.1\|1012048_1013539_+	TIGR03032 family protein	NA	NA	NA	NA
WP_011361777.1\|1013557_1014037_+	hypothetical protein	NA	NA	NA	NA
WP_011361778.1\|1014163_1014706_+	hypothetical protein	NA	NA	NA	NA
WP_011361779.1\|1014904_1015303_+	hypothetical protein	NA	NA	NA	NA
WP_011361780.1\|1015694_1016018_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_011361781.1\|1017684_1044300_+	DUF4347 domain-containing protein	NA	NA	NA	NA
WP_011361782.1\|1044583_1045291_+	hypothetical protein	NA	NA	NA	NA
WP_011361783.1\|1045451_1047215_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	3.7e-24	29.3
WP_011361784.1\|1049136_1050306_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011361785.1\|1050356_1051706_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_011361786.1\|1051934_1052669_+	glycosyltransferase family 25 protein	NA	NA	NA	NA
WP_011361787.1\|1052781_1053540_+	hypothetical protein	NA	NA	NA	NA
WP_011361788.1\|1053573_1054266_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011361703.1\|1054527_1055763_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_156772617.1\|1055940_1056450_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_156772561.1\|1056794_1057235_+	hypothetical protein	NA	NA	NA	NA
WP_011361791.1\|1057310_1058417_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_011361792.1\|1058683_1061068_+	ribonuclease R	Q0GXV6	Lactococcus_phage	5.0e-64	33.8
WP_011361793.1\|1061267_1061795_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_011361794.1\|1061794_1062832_+	iron ABC transporter permease	NA	NA	NA	NA
WP_011361795.1\|1062946_1064464_+	ATP-binding protein	NA	NA	NA	NA
WP_011361796.1\|1064573_1065755_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_041466682.1\|1065797_1066745_+	cobalamin biosynthesis protein	NA	NA	NA	NA
WP_011361798.1\|1067116_1069855_+	class I SAM-dependent DNA methyltransferase	Q6NE04	Leptospira_phage	9.5e-160	37.2
WP_011361799.1\|1069857_1071798_+	ATP-dependent helicase	NA	NA	NA	NA
WP_011361800.1\|1071784_1072981_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_011361801.1\|1073860_1074814_+	hypothetical protein	NA	NA	NA	NA
WP_041466455.1\|1075081_1078375_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_011361140.1\|1079122_1080358_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_011361804.1\|1080774_1082478_+	AIPR family protein	E5G6M2	Salmonella_phage	3.3e-38	31.2
WP_041466457.1\|1082953_1083406_+\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_011361805.1\|1083473_1087097_+	exodeoxyribonuclease V subunit beta	A0A068EQC7	Bacillus_phage	1.5e-11	23.4
WP_156772562.1\|1087342_1089085_+	exodeoxyribonuclease V subunit alpha	A0A218KCE8	Bacillus_phage	1.6e-11	25.1
WP_011361807.1\|1089176_1089668_+	hypothetical protein	NA	NA	NA	NA
WP_011361808.1\|1089944_1090952_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_011361809.1\|1091079_1092369_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_011361810.1\|1092603_1093464_+	acetylglutamate kinase	NA	NA	NA	NA
WP_011361811.1\|1093593_1094598_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_011361812.1\|1094628_1095075_+	arginine repressor	NA	NA	NA	NA
WP_011361813.1\|1095094_1096294_+	argininosuccinate synthase	NA	NA	NA	NA
WP_011361814.1\|1096583_1097948_-	DNA repair protein RadA	NA	NA	NA	NA
WP_011361815.1\|1097967_1098855_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.4e-35	41.1
WP_011361816.1\|1099152_1099734_+	DUF3109 family protein	NA	NA	NA	NA
WP_011361817.1\|1099726_1101163_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_011361818.1\|1101166_1101715_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_011361819.1\|1101993_1103481_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	2.4e-40	27.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_007514

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection