CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007520	Hydrogenovibrio crunogenus XCL-2, complete sequence	0 crisprs	DEDDh,cas3,DinG,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

726406 : 804595

Vibrio_phage(20.0%)

tRNA,capsid,protease,terminase,integrase,plate,portal,tail,head

attL 730398:730413|attR 761503:761518

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048810762.1\|726406_727123_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_011370071.1\|727223_727571_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_011370072.1\|727673_728567_+	site-specific tyrosine recombinase XerD	A0A2H4PCY2	Mycobacterium_phage	3.8e-17	33.2
WP_011370073.1\|728658_729387_+	DsbC family protein	NA	NA	NA	NA
WP_011370074.1\|729456_730677_-	hypothetical protein	NA	NA	NA	NA
730398:730413	attL	NA	NA	NA	NA
WP_011370075.1\|730689_731700_-	hypothetical protein	NA	NA	NA	NA
WP_048810763.1\|731803_732472_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.9e-06	24.6
WP_011370077.1\|732692_733811_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JIT5	Pseudomonas_phage	9.8e-55	34.5
WP_048810615.1\|733780_734017_-	hypothetical protein	NA	NA	NA	NA
WP_048810616.1\|734013_734235_-	hypothetical protein	NA	NA	NA	NA
WP_048810617.1\|734231_734501_-	hypothetical protein	NA	NA	NA	NA
WP_011370078.1\|734502_735036_-	hypothetical protein	A0A2I7RS75	Vibrio_phage	1.1e-19	37.1
WP_011370079.1\|735045_736992_-	DNA methyltransferase	A0A2D1GMT9	Marinobacter_phage	5.0e-147	60.6
WP_048810618.1\|736984_737422_-	hypothetical protein	NA	NA	NA	NA
WP_011370080.1\|737414_738092_-	hypothetical protein	NA	NA	NA	NA
WP_048810619.1\|738156_738378_-	hypothetical protein	NA	NA	NA	NA
WP_011370081.1\|738547_738883_-	hypothetical protein	NA	NA	NA	NA
WP_011370082.1\|738899_739259_-	hypothetical protein	NA	NA	NA	NA
WP_011370083.1\|739283_739550_-	hypothetical protein	NA	NA	NA	NA
WP_048810620.1\|739546_739744_-	hypothetical protein	NA	NA	NA	NA
WP_157858769.1\|739890_740817_+	NAD-dependent DNA ligase	NA	NA	NA	NA
WP_011370085.1\|740813_741689_-	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_011370086.1\|741688_742564_-	hypothetical protein	NA	NA	NA	NA
WP_011370087.1\|742567_743011_-	hypothetical protein	NA	NA	NA	NA
WP_048810622.1\|743125_743362_+	hypothetical protein	NA	NA	NA	NA
WP_011370088.1\|743393_743822_+	bacteriophage protein (Gp55-like)	NA	NA	NA	NA
WP_011370089.1\|744043_746545_+	toprim domain-containing protein	B7SYD0	Stenotrophomonas_phage	1.1e-146	39.5
WP_011370090.1\|746822_747389_+	3'-5' exoribonuclease	A0A2I7QJN5	Vibrio_phage	1.5e-11	31.8
WP_011370091.1\|747401_747938_+	hypothetical protein	NA	NA	NA	NA
WP_011370092.1\|747948_748479_+	DUF669 domain-containing protein	A0A088FAP5	Vibrio_phage	2.0e-18	42.5
WP_011370093.1\|748483_750661_+\|terminase	Phage terminase GpA	Q9JMM7	Wolbachia_phage	9.1e-89	35.0
WP_011370094.1\|750670_751105_+	hypothetical protein	NA	NA	NA	NA
WP_157858770.1\|751104_751269_+	hypothetical protein	A0A088C4Q7	Shewanella_sp._phage	2.7e-06	50.9
WP_048810624.1\|751265_751475_+	hypothetical protein	NA	NA	NA	NA
WP_011370095.1\|751674_752217_+	hypothetical protein	A0A0E3JI96	Rhodoferax_phage	1.3e-36	46.1
WP_011370096.1\|752213_752483_+	hypothetical protein	NA	NA	NA	NA
WP_011370097.1\|752479_753052_+	hypothetical protein	NA	NA	NA	NA
WP_011370098.1\|753057_753444_+	hypothetical protein	NA	NA	NA	NA
WP_011370099.1\|753448_753694_+	hypothetical protein	NA	NA	NA	NA
WP_011370100.1\|753702_755151_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	3.1e-85	39.4
WP_011370101.1\|755161_756553_+	S49 family peptidase	Q9JMP1	Wolbachia_phage	1.1e-50	45.4
WP_011370102.1\|756556_756901_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	6.8e-15	44.1
WP_011370103.1\|756949_757948_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.1e-80	46.5
WP_011370104.1\|758022_758355_+	hypothetical protein	NA	NA	NA	NA
WP_157858771.1\|758408_758921_+	hypothetical protein	D4HTU8	Vibrio_phage	8.6e-14	36.0
WP_157858772.1\|758940_759243_-	hypothetical protein	NA	NA	NA	NA
WP_011370107.1\|759317_759812_+	hypothetical protein	NA	NA	NA	NA
WP_011370108.1\|759820_760486_+\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	6.7e-11	44.4
WP_157858773.1\|760491_760830_+	hypothetical protein	A0A193GYY8	Enterobacter_phage	2.1e-08	37.5
WP_011370110.1\|760826_761723_+\|plate	baseplate J-like protein	D5LGZ3	Escherichia_phage	4.0e-51	43.2
761503:761518	attR	NA	NA	NA	NA
WP_011370111.1\|761715_762279_+\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	2.9e-15	40.2
WP_011370112.1\|762292_763315_+	hypothetical protein	A0A222YWB9	Escherichia_phage	6.5e-13	38.9
WP_011370113.1\|763324_763909_+	hypothetical protein	NA	NA	NA	NA
WP_011370114.1\|763931_764270_+	DUF1353 domain-containing protein	A0A0A8J9K3	Ralstonia_phage	9.3e-09	39.5
WP_011370115.1\|764232_764487_-	hypothetical protein	NA	NA	NA	NA
WP_011370116.1\|764603_765779_+\|tail	tail protein	D4HTW1	Vibrio_phage	5.8e-106	51.2
WP_011370117.1\|765804_766308_+	hypothetical protein	A0A193GYM4	Enterobacter_phage	2.5e-10	29.6
WP_157858774.1\|766316_766475_+	hypothetical protein	NA	NA	NA	NA
WP_048810625.1\|766471_766711_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_157858845.1\|766734_766827_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_162010946.1\|767199_769167_+\|tail	phage tail tape measure protein	H7BVM4	unidentified_phage	2.7e-55	36.9
WP_011370121.1\|769156_769585_+\|tail	phage tail protein	D4HTW5	Vibrio_phage	3.3e-11	30.7
WP_011370122.1\|769581_769794_+\|tail	Phage tail protein X	NA	NA	NA	NA
WP_011370123.1\|769795_770782_+	Phage protein D-like protein	R9TNM7	Vibrio_phage	4.1e-20	28.1
WP_011370124.1\|770778_771123_-	hypothetical protein	NA	NA	NA	NA
WP_011370125.1\|771305_771794_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_011370126.1\|771891_774150_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_048810626.1\|774784_775756_+	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_048810627.1\|775748_776441_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_011370129.1\|776466_777069_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_011370130.1\|777160_777703_+	hypothetical protein	NA	NA	NA	NA
WP_011370131.1\|777720_777894_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_011370132.1\|777986_779000_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_157858846.1\|779087_780053_+	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_011370134.1\|780139_781063_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_011370135.1\|781072_781813_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_011370136.1\|781984_782221_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	7.2e-08	44.4
WP_011370137.1\|782440_783679_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_011370138.1\|783732_785094_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_011370139.1\|785086_785974_+	aminodeoxychorismate lyase	NA	NA	NA	NA
WP_011370140.1\|785970_786978_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_011370141.1\|787005_787665_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.4e-37	43.1
WP_011370142.1\|787750_788728_+	DNA-directed DNA polymerase	A0A1U9WR94	Streptococcus_virus	3.2e-09	39.0
WP_011370143.1\|788757_789531_+	TatD family hydrolase	NA	NA	NA	NA
WP_011370144.1\|789527_791393_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-36	26.9
WP_011370145.1\|791524_793804_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.5e-73	30.8
WP_048810628.1\|794395_795250_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.9e-34	38.4
WP_157858847.1\|795370_795907_-	DUF5610 domain-containg protein	NA	NA	NA	NA
WP_157858848.1\|796365_797460_+	peptide chain release factor 2	NA	NA	NA	NA
WP_011370149.1\|797525_799040_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.7e-86	37.8
WP_048810768.1\|799163_800231_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_011370151.1\|800397_800955_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_157858849.1\|800994_802602_-	L-aspartate oxidase	NA	NA	NA	NA
WP_011370153.1\|802677_803181_+	SoxR reducing system RseC family protein	NA	NA	NA	NA
WP_011370154.1\|803191_804595_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	3.0e-24	30.1

DBSCAN-SWA_2

995747 : 1007528

Acanthamoeba_polyphaga_mimivirus(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011370343.1\|995747_996254_-	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.3e-10	31.9
WP_011370344.1\|996334_996910_-	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.1e-12	34.8
WP_011370345.1\|997208_998888_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	2.7e-226	68.7
WP_011370346.1\|998887_1000258_+\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	1.7e-45	34.5
WP_011370347.1\|1000464_1002456_-	transglycosylase SLT domain-containing protein	A0A0S2SXL7	Bacillus_phage	8.8e-14	39.2
WP_011370348.1\|1002460_1004101_-	LysM peptidoglycan-binding domain-containing protein	A0A0A7NU10	Lactobacillus_phage	4.9e-10	29.1
WP_011370349.1\|1004093_1004900_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_011370350.1\|1004957_1005743_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011370351.1\|1005747_1006185_+	ribonuclease HI	M4QS60	Ostreococcus_lucimarinus_virus	1.7e-31	49.3
WP_162010947.1\|1006189_1006771_-	hypothetical protein	A0A2L2DM59	Acanthamoeba_polyphaga_mimivirus	8.2e-05	30.7
WP_011370353.1\|1006832_1007528_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.2e-39	38.8

DBSCAN-SWA_3

1510362 : 1517536

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011370820.1\|1510362_1510824_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.3e-34	49.0
WP_011370821.1\|1510882_1512001_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.0e-64	38.1
WP_011370822.1\|1512019_1512685_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	5.5e-21	32.9
WP_011370823.1\|1512684_1513860_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.3e-49	37.2
WP_011370824.1\|1513859_1514324_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_011370825.1\|1514343_1515615_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.5e-96	51.4
WP_011370826.1\|1515865_1517536_+	energy-dependent translational throttle protein EttA	A0A1B0RXA0	Streptococcus_phage	6.0e-40	29.4

DBSCAN-SWA_4

1838377 : 1848018

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011371105.1\|1838377_1839235_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.3e-06	31.5
WP_011371106.1\|1839218_1840526_-	hypothetical protein	NA	NA	NA	NA
WP_011371107.1\|1840544_1841072_-	dTDP-4-dehydrorhamnose 3,5-epimerase	H9NC63	Sphingomonas_phage	1.2e-15	37.0
WP_011371108.1\|1841068_1841998_-	NAD(P)-dependent oxidoreductase	M4QPK0	Synechococcus_phage	1.3e-15	26.1
WP_011371109.1\|1841997_1843314_-	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	1.5e-62	34.1
WP_011371110.1\|1843300_1844374_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.2e-14	24.2
WP_011371111.1\|1844377_1845151_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011371112.1\|1845179_1846163_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_011371113.1\|1846164_1848018_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	6.3e-131	43.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage