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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_007633 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome 7 crisprs NA 4 2 1 0

Results visualization

1. NC_007633
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007633_1 212371-212560 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007633_2 212947-213061 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007633_3 213172-213584 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007633_4 239894-240002 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007633_5 339324-339586 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007633_6 529913-530017 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_007633_7 738367-738479 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_007633_2 2.1|212986|36|NC_007633|CRISPRCasFinder 212986-213021 36 NC_007633.1 214779-214814 1 0.972
NC_007633_3 3.2|213286|36|NC_007633|CRISPRCasFinder 213286-213321 36 NC_007633.1 373317-373352 1 0.972
NC_007633_3 3.2|213286|36|NC_007633|CRISPRCasFinder 213286-213321 36 NC_007633.1 373656-373691 1 0.972
NC_007633_3 3.2|213286|36|NC_007633|CRISPRCasFinder 213286-213321 36 NC_007633.1 375422-375457 1 0.972
NC_007633_3 3.2|213286|36|NC_007633|CRISPRCasFinder 213286-213321 36 NC_007633.1 375647-375682 1 0.972
NC_007633_1 1.2|212485|36|NC_007633|CRISPRCasFinder 212485-212520 36 NC_007633.1 376336-376371 2 0.944
NC_007633_3 3.2|213286|36|NC_007633|CRISPRCasFinder 213286-213321 36 NC_007633.1 365055-365090 2 0.944
NC_007633_3 3.5|213510|36|NC_007633|CRISPRCasFinder 213510-213545 36 NC_007633.1 376336-376371 2 0.944

1. spacer 2.1|212986|36|NC_007633|CRISPRCasFinder matches to position: 214779-214814, mismatch: 1, identity: 0.972

aaaggtgcaacttcatttaaccaacccattggtaac	CRISPR spacer
aaaggtgcaacttcatttgaccaacccattggtaac	Protospacer
******************.*****************

2. spacer 3.2|213286|36|NC_007633|CRISPRCasFinder matches to position: 373317-373352, mismatch: 1, identity: 0.972

tgctttgctgaatcatttaaccaacccattggtaac	CRISPR spacer
tgctttgctgaatcattcaaccaacccattggtaac	Protospacer
*****************.******************

3. spacer 3.2|213286|36|NC_007633|CRISPRCasFinder matches to position: 373656-373691, mismatch: 1, identity: 0.972

tgctttgctgaatcatttaaccaacccattggtaac	CRISPR spacer
tgctttgctgaatcattcaaccaacccattggtaac	Protospacer
*****************.******************

4. spacer 3.2|213286|36|NC_007633|CRISPRCasFinder matches to position: 375422-375457, mismatch: 1, identity: 0.972

tgctttgctgaatcatttaaccaacccattggtaac	CRISPR spacer
tgctttgctgaatcattcaaccaacccattggtaac	Protospacer
*****************.******************

5. spacer 3.2|213286|36|NC_007633|CRISPRCasFinder matches to position: 375647-375682, mismatch: 1, identity: 0.972

tgctttgctgaatcatttaaccaacccattggtaac	CRISPR spacer
tgctttgctgaatcattcaaccaacccattggtaac	Protospacer
*****************.******************

6. spacer 1.2|212485|36|NC_007633|CRISPRCasFinder matches to position: 376336-376371, mismatch: 2, identity: 0.944

tatggagcaaaaaacttcaaccaacccattggtaac	CRISPR spacer
tatgaagcaaaaagcttcaaccaacccattggtaac	Protospacer
****.********.**********************

7. spacer 3.2|213286|36|NC_007633|CRISPRCasFinder matches to position: 365055-365090, mismatch: 2, identity: 0.944

tgctttgctgaatcatttaaccaacccattggtaac	CRISPR spacer
tgctttgctgaatcatttaaccaacccatcgataac	Protospacer
*****************************.*.****

8. spacer 3.5|213510|36|NC_007633|CRISPRCasFinder matches to position: 376336-376371, mismatch: 2, identity: 0.944

tatggagcaaaaaacttcaaccaacccattggtaac	CRISPR spacer
tatgaagcaaaaagcttcaaccaacccattggtaac	Protospacer
****.********.**********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_007633_7 7.2|738432|25|NC_007633|CRISPRCasFinder 738432-738456 25 NC_011314 Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence 27056-27080 4 0.84
NC_007633_7 7.2|738432|25|NC_007633|CRISPRCasFinder 738432-738456 25 NZ_CP034239 Aliivibrio salmonicida strain VS224 plasmid pVS320-224, complete sequence 19599-19623 4 0.84
NC_007633_7 7.2|738432|25|NC_007633|CRISPRCasFinder 738432-738456 25 MK250029 Prevotella phage Lak-C1, complete genome 255739-255763 4 0.84
NC_007633_7 7.2|738432|25|NC_007633|CRISPRCasFinder 738432-738456 25 MK250016 Prevotella phage Lak-A1, complete genome 291816-291840 4 0.84
NC_007633_7 7.2|738432|25|NC_007633|CRISPRCasFinder 738432-738456 25 MK250019 Prevotella phage Lak-A2, complete genome 212950-212974 4 0.84
NC_007633_7 7.2|738432|25|NC_007633|CRISPRCasFinder 738432-738456 25 NZ_CP032091 Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence 395205-395229 4 0.84
NC_007633_2 2.1|212986|36|NC_007633|CRISPRCasFinder 212986-213021 36 MT811961 Vibrio phage vB_pir03, complete genome 178951-178986 9 0.75

1. spacer 7.2|738432|25|NC_007633|CRISPRCasFinder matches to NC_011314 (Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence) position: , mismatch: 4, identity: 0.84

attatcgtctttatattcaatatcg	CRISPR spacer
attatcgtctttatgttcaataggc	Protospacer
**************.*******   

2. spacer 7.2|738432|25|NC_007633|CRISPRCasFinder matches to NZ_CP034239 (Aliivibrio salmonicida strain VS224 plasmid pVS320-224, complete sequence) position: , mismatch: 4, identity: 0.84

attatcgtctttatattcaatatcg	CRISPR spacer
attatcgtctttatgttcaataggc	Protospacer
**************.*******   

3. spacer 7.2|738432|25|NC_007633|CRISPRCasFinder matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 4, identity: 0.84

attatcgtctttatattcaatatcg	CRISPR spacer
attatcggctttatattcaataggt	Protospacer
******* **************   

4. spacer 7.2|738432|25|NC_007633|CRISPRCasFinder matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 4, identity: 0.84

attatcgtctttatattcaatatcg	CRISPR spacer
attatcggctttatattcaataggt	Protospacer
******* **************   

5. spacer 7.2|738432|25|NC_007633|CRISPRCasFinder matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 4, identity: 0.84

attatcgtctttatattcaatatcg	CRISPR spacer
attatcggctttatattcaataggt	Protospacer
******* **************   

6. spacer 7.2|738432|25|NC_007633|CRISPRCasFinder matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

attatcgtctttatattcaatatcg	CRISPR spacer
aatatcgtctttatcttcaatatga	Protospacer
* ************ ******** .

7. spacer 2.1|212986|36|NC_007633|CRISPRCasFinder matches to MT811961 (Vibrio phage vB_pir03, complete genome) position: , mismatch: 9, identity: 0.75

aaaggtgcaacttcatttaaccaacccattggtaac	CRISPR spacer
agagacgcaacttcatttaaccaaccagttggctca	Protospacer
*.**..******************** .****.   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 112507 : 126512 13 Lactococcus_phage(25.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage